RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NLRP4A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040601

Ensembl transcript IDs: ENSMUST00000068767.10, ENSMUST00000119386.8, ENSMUST00000146907.3

Found 254 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CATCTTTCAGCTCATAATAGTCTAAAGCTCCAACTCCAAGGGATCTaGCATCCTCTTATGGCCTTTGCAGGTACCTGTGCTCATGTGTTC +
Preference number: 1 (lower is better)
Translates to: HLSAHNSLKLQLQGI*HPLMAFAGTCAHVF
Trigger: GAACACATGAGCACAGGTACCTGCAAAGGCCATAAGAGGATGTCAGATCCCTTGGAGTTGGAGCTTTAGACTATTATGAGCTGAAAGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068767.10
3UTR-3UTR CCA 90 bp ATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGATTTTTCGTTCTGCAGGAATTGTaGTTCCTACACTTGTATGTC +
Preference number: 2 (lower is better)
Translates to: IYLSNTEVIIANPMPGFFVLQEL*FLHLYV
Trigger: GACATACAAGTGTAGGAACCACAATTCCTGCAGAAC...GAAAAATCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
3UTR-3UTR CCA 90 bp TACTCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCATGTCAAGCCCTCTATaGACTGAACTCATATTTCTA +
Preference number: 2 (lower is better)
Translates to: YSCIYLSNTEVIIANPMPMSSPL*TELIFL
Trigger: TAGAAATATGAGTTCAGTCCATAGAGGGCTTGACAT...GGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGAGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
3UTR-3UTR GCA 90 bp ACAAAGAATCAAGTCAGATCAGTCTTTTTCAGAATCTCAGTTTGGCCATCATCTAAGCCACATCTATCTTaGAAGACACATCTAAATGTG +
Preference number: 2 (lower is better)
Translates to: TKNQVRSVFFRISVWPSSKPHLS*KTHLNV
Trigger: CACATTTAGATGTGTCTTGCAAGATAGATGTGGCTT...AGATGATGGCCAAACTGAGATTCTGAAAAAGACTGATCTGACTTGATTCTTTGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068767.10
3UTR GCA 72 bp CCAACTCCAAGGGATCTGACATCCTCTTATGGCCTTTaGAGGTACCTGTGCTCATGTGTTCACACACACACA +
Preference number: 3 (lower is better)
Translates to: PTPRDLTSSYGL*RYLCSCVHTHT
Trigger: TGTGTGTGTGTGAACACATGAGCACAGGTACCTGCAAAGGCCATAAGAGGATGTCAGATCCCTTGGAGTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068767.10
3UTR TCA 72 bp GCTCATAATAGTCTAAAGCTCCAACTCCAAGGGATCTaGCATCCTCTTATGGCCTTTGCAGGTACCTGTGCT +
Preference number: 3 (lower is better)
Translates to: AHNSLKLQLQGI*HPLMAFAGTCA
Trigger: AGCACAGGTACCTGCAAAGGCCATAAGAGGATGTCAGATCCCTTGGAGTTGGAGCTTTAGACTATTATGAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068767.10
3UTR-3UTR CAA 90 bp ATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGATTTTTCTTGTGGTTCCTACACTaGTATGTCAAGCCCTCTATG +
Preference number: 3 (lower is better)
Translates to: IYLSNTEVIIANPMPGFFLWFLH*YVKPSM
Trigger: CATAGAGGGCTTGACATACAAGTGTAGGAACCACAA...GAAAAATCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
3UTR TCA 72 bp GGGTCTCTAACCAATTTGAGTAGATTGGCTTCCCAGTaGACATTAAGGATACTCCTGTATTTACCTTTCCAA +
Preference number: 3 (lower is better)
Translates to: GSLTNLSRLASQ*TLRILLYLPFQ
Trigger: TTGGAAAGGTAAATACAGGAGTATCCTTAATGTTCACTGGGAAGCCAATCTACTCAAATTGGTTAGAGACCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
3UTR TCA 72 bp ACATTAAGGATACTCCTGTATTTACCTTTCCAATACTaGGGTTATAATTGCAAACCCCATGCCCGGATTTTT +
Preference number: 3 (lower is better)
Translates to: TLRILLYLPFQY*GYNCKPHARIF
Trigger: AAAAATCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGAGTATCCTTAATGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR TCA 90 bp TCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCTCTCCTCTATGGGAGCTaGGGGGCCAGGCCATTCTCT +
Preference number: 4 (lower is better)
Translates to: SNTPMVLAPEFPSLFSASLLYGS*GARPFS
Trigger: AGAGAATGGCCTGGCCCCTCAGCTCCCATAGAGGAG...AGAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp GAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCGGCCAGGCCATTCTCTaGAGATCAATTCAGCCAGGC +
Preference number: 4 (lower is better)
Translates to: EVQYTHGSCTRISILVLCGQAIL*RSIQPG
Trigger: GCCTGGCTGAATTGATCTCCAGAGAATGGCCTGGCC...GCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp GTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCGGCCAGGCCATTCTCTaGAGATCAATTCAGCCAGGC +
Preference number: 4 (lower is better)
Translates to: VQYTHGSCTRISILVLCFGQAIL*RSIQPG
Trigger: GCCTGGCTGAATTGATCTCCAGAGAATGGCCTGGCC...GAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp TCCAAGGGATCTGACATCCTCTTATGGCCTTTGCAGGTACCTGTGCTCATGTGTACTTCAGCCAGGTCCTaGCAACCACTAATGGTGATG +
Preference number: 4 (lower is better)
Translates to: SKGSDILLWPLQVPVLMCTSARS*QPLMVM
Trigger: CATCACCATTAGTGGTTGCCAGGACCTGGCTGAAGT...ACACATGAGCACAGGTACCTGCAAAGGCCATAAGAGGATGTCAGATCCCTTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068767.10
CDS-3UTR TCA 90 bp TACTCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCCTCCTCTATGGGAGCTaGGGGGCCAGGCCATTCTCT +
Preference number: 4 (lower is better)
Translates to: YSCIYLSNTEVIIANPMPLLYGS*GARPFS
Trigger: AGAGAATGGCCTGGCCCCTCAGCTCCCATAGAGGAG...GGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGAGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR TCA 90 bp GAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCCCCAGCATTTCTCATTaGGGGAGCAGTTGGCCAAAA +
Preference number: 4 (lower is better)
Translates to: EVQYTHGSCTRISILVLCPSISH*GSSWPK
Trigger: TTTTGGCCAACTGCTCCCTCAATGAGAAATGCTGGG...GCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp TTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTATAGTATCTCCTCTATaGGAGCTGAGGGGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: LRSNTPMVLAPEFPSLFSIVSPL*ELRGQA
Trigger: GGCCTGGCCCCTCAGCTCCCATAGAGGAGATACTAT...AGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp GGAGGTTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCGAGCTGATGTCTAGGTaGCTCAAGGTTTTGTTCCGC +
Preference number: 4 (lower is better)
Translates to: GGCLRSNTPMVLAPEFPSELMSR*LKVLFR
Trigger: GCGGAACAAAACCTTGAGCCACCTAGACATCAGCTC...GGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAACCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp GGAGGTTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCACTTCAGCCAGGTCCTaGCAACCACTAATGGTGATG +
Preference number: 4 (lower is better)
Translates to: GGCLRSNTPMVLAPEFPSTSARS*QPLMVM
Trigger: CATCACCATTAGTGGTTGCCAGGACCTGGCTGAAGT...GGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAACCTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR GCA 90 bp GGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTTCAACATCAGTGTCTTaGCAACTCCAGCACCACCAC +
Preference number: 4 (lower is better)
Translates to: GPIHPWFLHQNFHPCSLLSTSVS*QLQHHH
Trigger: GTGGTGGTGCTGGAGTTGGCAAGACACTGATGTTGA...AAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR GCA 90 bp GTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCTCAACATCAGTGTCTTaGCAACTCCAGCACCACCAC +
Preference number: 4 (lower is better)
Translates to: VQYTHGSCTRISILVLCFSTSVS*QLQHHH
Trigger: GTGGTGGTGCTGGAGTTGGCAAGACACTGATGTTGA...GAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR GCA 90 bp AAAAACGGCAACAGTTTCCATGATCTGAGTGTCCAGTCTAGGGCCTCTGCTAAACTAAGTGCTCGAGAATaGAGTCTGGGTGGCACAAAG +
Preference number: 4 (lower is better)
Translates to: KNGNSFHDLSVQSRASAKLSARE*SLGGTK
Trigger: CTTTGTGCCACCCAGACTGCATTCTCGAGCACTTAG...TTTAGCAGAGGCCCTAGACTGGACACTCAGATCATGGAAACTGTTGCCGTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068767.10
CDS-3UTR CCA 90 bp TTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTATAGTATCTCCTCTATaGGAGCTGAGGGGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: LFEVQYTHGSCTRISILVIVSPL*ELRGQA
Trigger: GGCCTGGCCCCTCAGCTCCCATAGAGGAGATACTAT...AACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp GGAGGTTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCAGACTGAAGGCTTCATaGGCTCTGTTCCTATCTTGG +
Preference number: 4 (lower is better)
Translates to: GGCLRSNTPMVLAPEFPSRLKAS*ALFLSW
Trigger: CCAAGATAGGAACAGAGCCCATGAAGCCTTCAGTCT...GGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAACCTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp CAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCTGCGAGCTGATGTCTAGGTaGCTCAAGGTTTTGTTCCGC +
Preference number: 4 (lower is better)
Translates to: QYTHGSCTRISILVLCFCELMSR*LKVLFR
Trigger: GCGGAACAAAACCTTGAGCCACCTAGACATCAGCTC...GCAGAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp GAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCAGGCTGACCAGGTTCTaGTTGTTCCTCAAGACTTCA +
Preference number: 4 (lower is better)
Translates to: EVQYTHGSCTRISILVLCRLTRF*LFLKTS
Trigger: TGAAGTCTTGAGGAACAACCAGAACCTGGTCAGCCT...GCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR TCA 90 bp TCCAAGGGATCTGACATCCTCTTATGGCCTTTGCAGGTACCTGTGCTCATGTGTGCTCTGATTCCCATTTaGACAAATCACATTCCATCC +
Preference number: 4 (lower is better)
Translates to: SKGSDILLWPLQVPVLMCALIPI*TNHIPS
Trigger: GGATGGAATGTGATTTGTTCAAATGGGAATCAGAGC...ACACATGAGCACAGGTACCTGCAAAGGCCATAAGAGGATGTCAGATCCCTTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068767.10
CDS-3UTR TCA 90 bp TGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCGCTGCACAGACCTCCTaGACAGATGGATGGAGAAAT +
Preference number: 4 (lower is better)
Translates to: CLRSNTPMVLAPEFPSLFAAQTS*TDGWRN
Trigger: ATTTCTCCATCCATCTGTTCAGGAGGTCTGTGCAGC...GAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR TCA 90 bp GAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCCCGCCTAAGAACTTCTaGAAGGTAATCCCAGCATTT +
Preference number: 4 (lower is better)
Translates to: EVQYTHGSCTRISILVLCPPKNF*KVIPAF
Trigger: AAATGCTGGGATTACCTTTCAGAAGTTCTTAGGCGG...GCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR GCA 90 bp CCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCTGTGTTTCAGGCCCAACTaGAAAACCTCCTGTTTGAGG +
Preference number: 4 (lower is better)
Translates to: PIHPWFLHQNFHPCSLLLCFRPN*KTSCLR
Trigger: CCTCAAACAGGAGGTTTTGCAGTTGGGCCTGAAACA...CAGAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR GCA 90 bp GTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCTGTTTCAGGCCCAACTaGAAAACCTCCTGTTTGAGG +
Preference number: 4 (lower is better)
Translates to: VQYTHGSCTRISILVLCFCFRPN*KTSCLR
Trigger: CCTCAAACAGGAGGTTTTGCAGTTGGGCCTGAAACA...GAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR GCA 90 bp GGTTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGGGTGGCACAAAGACTTaGACAGTGAGGCTATTCCTT +
Preference number: 4 (lower is better)
Translates to: GCLRSNTPMVLAPEFPSLGGTKT*TVRLFL
Trigger: AAGGAATAGCCTCACTGTGCAAGTCTTTGTGCCACC...CAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR GCA 90 bp CCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCTGGGTGGCACAAAGACTTaGACAGTGAGGCTATTCCTT +
Preference number: 4 (lower is better)
Translates to: PIHPWFLHQNFHPCSLLLGGTKT*TVRLFL
Trigger: AAGGAATAGCCTCACTGTGCAAGTCTTTGTGCCACC...CAGAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR GCA 90 bp TGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCCTAAGTGCTCGAGAATaGAGTCTGGGTGGCACAAAG +
Preference number: 4 (lower is better)
Translates to: CLRSNTPMVLAPEFPSLFLSARE*SLGGTK
Trigger: CTTTGTGCCACCCAGACTGCATTCTCGAGCACTTAG...GAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp TACTCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGCCAGGCCATTCTCTaGAGATCAATTCAGCCAGGC +
Preference number: 4 (lower is better)
Translates to: YSCIYLSNTEVIIANPMPGQAIL*RSIQPG
Trigger: GCCTGGCTGAATTGATCTCCAGAGAATGGCCTGGCC...GGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CCA 90 bp TACTCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCATAGTATCTCCTCTATaGGAGCTGAGGGGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: YSCIYLSNTEVIIANPMPIVSPL*ELRGQA
Trigger: GGCCTGGCCCCTCAGCTCCCATAGAGGAGATACTAT...GGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CCA 90 bp CAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCTGCACGGCAAATGGAGACTaGGTCTCTTCCCTTCTCTAT +
Preference number: 4 (lower is better)
Translates to: QYTHGSCTRISILVLCFCTANGD*VSSLLY
Trigger: ATAGAGAAGGGAAGAGACCCAGTCTCCATTTGCCGT...GCAGAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR TCA 90 bp AGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCTTCTGGAAAAATCTaGAGGTCATATCCCAGGCTG +
Preference number: 4 (lower is better)
Translates to: RSNTPMVLAPEFPSLFSASSGKI*RSYPRL
Trigger: CAGCCTGGGATATGACCTTCAGATTTTTCCAGAAGA...AGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR TCA 90 bp GAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCGCTCTGATTCCCATTTaGACAAATCACATTCCATCC +
Preference number: 4 (lower is better)
Translates to: EVQYTHGSCTRISILVLCALIPI*TNHIPS
Trigger: GGATGGAATGTGATTTGTTCAAATGGGAATCAGAGC...GCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR TCA 90 bp TTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGGACCTGACATACAGTaGACAGCTGCTCATTTTCTC +
Preference number: 4 (lower is better)
Translates to: LRSNTPMVLAPEFPSLFSGPDIQ*TAAHFL
Trigger: GAGAAAATGAGCAGCTGTTCACTGTATGTCAGGTCC...AGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR TCA 90 bp CCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCTGAACACAGAGCAAATATaGTTCCAAGCAGTGAGCAGC +
Preference number: 4 (lower is better)
Translates to: PIHPWFLHQNFHPCSLLLNTEQI*FQAVSS
Trigger: GCTGCTCACTGCTTGGAATCATATTTGCTCTGTGTT...CAGAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR TCA 90 bp GGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTAACACAGAGCAAATATaGTTCCAAGCAGTGAGCAGC +
Preference number: 4 (lower is better)
Translates to: GPIHPWFLHQNFHPCSLLNTEQI*FQAVSS
Trigger: GCTGCTCACTGCTTGGAATCATATTTGCTCTGTGTT...AAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR TCA 90 bp AGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTCCGCCTAAGAACTTCTaGAAGGTAATCCCAGCATTT +
Preference number: 4 (lower is better)
Translates to: RSNTPMVLAPEFPSLFSAPPKNF*KVIPAF
Trigger: AAATGCTGGGATTACCTTTCAGAAGTTCTTAGGCGG...AGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR GCA 90 bp GAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCGTGGCTTTGATTCAGTaGCCTTTGATTGGAAAAGGT +
Preference number: 4 (lower is better)
Translates to: EVQYTHGSCTRISILVLCVALIQ*PLIGKG
Trigger: ACCTTTTCCAATCAAAGGGCACTGAATCAAAGCCAC...GCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR GCA 90 bp TCCAAGGGATCTGACATCCTCTTATGGCCTTTGCAGGTACCTGTGCTCATGTGTAGTACATTCACTGGCTaGTTCTCTGTACAGTTATCA +
Preference number: 4 (lower is better)
Translates to: SKGSDILLWPLQVPVLMCSTFTG*FSVQLS
Trigger: TGATAACTGTACAGAGAAGCAGCCAGTGAATGTACT...ACACATGAGCACAGGTACCTGCAAAGGCCATAAGAGGATGTCAGATCCCTTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068767.10
CDS-3UTR CCA 90 bp GTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCGCTCTGGAACTGTCATaGGTCATCTTGGTCTTCATA +
Preference number: 4 (lower is better)
Translates to: VQYTHGSCTRISILVLCFALELS*VILVFI
Trigger: TATGAAGACCAAGATGACCCATGACAGTTCCAGAGC...GAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp GGTTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGGCTCTGGAACTGTCATaGGTCATCTTGGTCTTCATA +
Preference number: 4 (lower is better)
Translates to: GCLRSNTPMVLAPEFPSLALELS*VILVFI
Trigger: TATGAAGACCAAGATGACCCATGACAGTTCCAGAGC...CAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp GTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCCAGCAGTACATTCACTaGCTGCTTCTCTGTACAGTT +
Preference number: 4 (lower is better)
Translates to: VQYTHGSCTRISILVLCFQQYIH*LLLCTV
Trigger: AACTGTACAGAGAAGCAGCCAGTGAATGTACTGCTG...GAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp TGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCAGACTGAAGGCTTCATaGGCTCTGTTCCTATCTTGG +
Preference number: 4 (lower is better)
Translates to: CLRSNTPMVLAPEFPSLFRLKAS*ALFLSW
Trigger: CCAAGATAGGAACAGAGCCCATGAAGCCTTCAGTCT...GAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp TTTGGAGGTTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCACCCTGCAGCTGGTCTTaGCTTTTCTTACTTGGAGAA +
Preference number: 4 (lower is better)
Translates to: FGGCLRSNTPMVLAPEFPPCSWS*LFLLGE
Trigger: TTCTCCAAGTAAGAAAAGCCAAGACCAGCTGCAGGG...TGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAACCTCCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068767.10
CDS-3UTR CCA 90 bp AGGTTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTAGGCTGACCAGGTTCTaGTTGTTCCTCAAGACTTCA +
Preference number: 4 (lower is better)
Translates to: RLFEVQYTHGSCTRISILRLTRF*LFLKTS
Trigger: TGAAGTCTTGAGGAACAACCAGAACCTGGTCAGCCT...AAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAACCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR TCA 90 bp TCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCTTCTTCTGGAAAAATCTaGAGGTCATATCCCAGGCTG +
Preference number: 4 (lower is better)
Translates to: SNTPMVLAPEFPSLFSASSSGKI*RSYPRL
Trigger: CAGCCTGGGATATGACCTTCAGATTTTTCCAGAAGA...AGAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR TCA 90 bp TTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTGGACCTGACATACAGTaGACAGCTGCTCATTTTCTC +
Preference number: 4 (lower is better)
Translates to: LFEVQYTHGSCTRISILVGPDIQ*TAAHFL
Trigger: GAGAAAATGAGCAGCTGTTCACTGTATGTCAGGTCC...AACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR TCA 90 bp TTACCTGCACATTTAAGATCTCAGTTTATCCCTATCAAGAAGATCAGAGGCCAGGCTGCACAGACCTCCTaGACAGATGGATGGAGAAAT +
Preference number: 4 (lower is better)
Translates to: LPAHLRSQFIPIKKIRGQAAQTS*TDGWRN
Trigger: ATTTCTCCATCCATCTGTTCAGGAGGTCTGTGCAGC...CTGGCCTCTGATCTTCTTGATAGGGATAAACTGAGATCTTAAATGTGCAGGTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR TCA 90 bp TTACCTGCACATTTAAGATCTCAGTTTATCCCTATCAAGAAGATCAGAGGCCAGCCCAGCATTTCTCATTaGGGGAGCAGTTGGCCAAAA +
Preference number: 4 (lower is better)
Translates to: LPAHLRSQFIPIKKIRGQPSISH*GSSWPK
Trigger: TTTTGGCCAACTGCTCCCTCAATGAGAAATGCTGGG...CTGGCCTCTGATCTTCTTGATAGGGATAAACTGAGATCTTAAATGTGCAGGTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR TCA 90 bp AAAAACGGCAACAGTTTCCATGATCTGAGTGTCCAGTCTAGGGCCTCTGCTAAACACAGAGTCTTACACTaGGTAAATGTAGATGCAAGG +
Preference number: 4 (lower is better)
Translates to: KNGNSFHDLSVQSRASAKHRVLH*VNVDAR
Trigger: CCTTGCATCTACATTTACTCAGTGTAAGACTCTGTG...TTTAGCAGAGGCCCTAGACTGGACACTCAGATCATGGAAACTGTTGCCGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068767.10
CDS-3UTR GCA 90 bp GGTTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGGTGGCTTTGATTCAGTaGCCTTTGATTGGAAAAGGT +
Preference number: 4 (lower is better)
Translates to: GCLRSNTPMVLAPEFPSLVALIQ*PLIGKG
Trigger: ACCTTTTCCAATCAAAGGGCACTGAATCAAAGCCAC...CAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR GCA 90 bp TGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTTCTATGTTGCACTCTaGCTGGCTCAAGACATCACA +
Preference number: 4 (lower is better)
Translates to: CLRSNTPMVLAPEFPSLFFYVAL*LAQDIT
Trigger: TGTGATGTCTTGAGCCAGGCAGAGTGCAACATAGAA...GAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR GCA 90 bp TCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCTTTCTATGTTGCACTCTaGCTGGCTCAAGACATCACA +
Preference number: 4 (lower is better)
Translates to: SNTPMVLAPEFPSLFSASFYVAL*LAQDIT
Trigger: TGTGATGTCTTGAGCCAGGCAGAGTGCAACATAGAA...AGAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR GCA 90 bp TCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGAGGTGGCACAAAGACTTaGACAGTGAGGCTATTCCTT +
Preference number: 4 (lower is better)
Translates to: SCIYLSNTEVIIANPMPGGGTKT*TVRLFL
Trigger: AAGGAATAGCCTCACTGTGCAAGTCTTTGTGCCACC...TCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR GCA 90 bp GGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTACAGACTGCTTAGGATaGGCAAGCATGGATTTTTCT +
Preference number: 4 (lower is better)
Translates to: GPIHPWFLHQNFHPCSLLTDCLG*ASMDFS
Trigger: AGAAAAATCCATGCTTGCGCATCCTAAGCAGTCTGT...AAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp AGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTGTCATGGGTCATCTTaGTCTTCATATGAGCTCGAT +
Preference number: 4 (lower is better)
Translates to: RSNTPMVLAPEFPSLFSACHGSS*SSYELD
Trigger: ATCGAGCTCATATGAAGACCAAGATGACCCATGACA...AGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp TTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTTTTGTGCAGAAACACTaGGCTTTCTATCCAGGCCAG +
Preference number: 4 (lower is better)
Translates to: LFEVQYTHGSCTRISILVFVQKH*AFYPGQ
Trigger: CTGGCCTGGATAGAAAGCCCAGTGTTTCTGCACAAA...AACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp TCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGATTTGTGCAGAAACACTaGGCTTTCTATCCAGGCCAG +
Preference number: 4 (lower is better)
Translates to: SCIYLSNTEVIIANPMPGFVQKH*AFYPGQ
Trigger: CTGGCCTGGATAGAAAGCCCAGTGTTTCTGCACAAA...TCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CCA 90 bp GGAGGTTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCGCTCTGTTCCTATCTTaGAATAATCTGTGGAAACTC +
Preference number: 4 (lower is better)
Translates to: GGCLRSNTPMVLAPEFPSALFLS*NNLWKL
Trigger: GAGTTTCCACAGATTATTCCAAGATAGGAACAGAGC...GGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAACCTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp GGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTTTGGCTTTTCTTACTTaGAGAATGGGCATTTTGGGG +
Preference number: 4 (lower is better)
Translates to: GPIHPWFLHQNFHPCSLLLAFLT*RMGILG
Trigger: CCCCAAAATGCCCATTCTCCAAGTAAGAAAAGCCAA...AAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp TTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCCCTGCAGCTGGTCTTaGCTTTTCTTACTTGGAGAA +
Preference number: 4 (lower is better)
Translates to: LFEVQYTHGSCTRISILVPCSWS*LFLLGE
Trigger: TTCTCCAAGTAAGAAAAGCCAAGACCAGCTGCAGGG...AACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp AAAAACGGCAACAGTTTCCATGATCTGAGTGTCCAGTCTAGGGCCTCTGCTAAACCACTCAGGACATTCTaGGTTGAAAAGGATAGTTTC +
Preference number: 4 (lower is better)
Translates to: KNGNSFHDLSVQSRASAKPLRTF*VEKDSF
Trigger: GAAACTATCCTTTTCAACCCAGAATGTCCTGAGTGG...TTTAGCAGAGGCCCTAGACTGGACACTCAGATCATGGAAACTGTTGCCGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068767.10
CDS-3UTR CCA 90 bp GGTTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGCCACTCAGGACATTCTaGGTTGAAAAGGATAGTTTC +
Preference number: 4 (lower is better)
Translates to: GCLRSNTPMVLAPEFPSLPLRTF*VEKDSF
Trigger: GAAACTATCCTTTTCAACCCAGAATGTCCTGAGTGG...CAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp TACTCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGAGCTGATGTCTAGGTaGCTCAAGGTTTTGTTCCGC +
Preference number: 4 (lower is better)
Translates to: YSCIYLSNTEVIIANPMPELMSR*LKVLFR
Trigger: GCGGAACAAAACCTTGAGCCACCTAGACATCAGCTC...GGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CCA 90 bp TACTCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCACTTCAGCCAGGTCCTaGCAACCACTAATGGTGATG +
Preference number: 4 (lower is better)
Translates to: YSCIYLSNTEVIIANPMPTSARS*QPLMVM
Trigger: CATCACCATTAGTGGTTGCCAGGACCTGGCTGAAGT...GGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR TCA 90 bp TCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGATCTTCTGGAAAAATCTaGAGGTCATATCCCAGGCTG +
Preference number: 4 (lower is better)
Translates to: SCIYLSNTEVIIANPMPGSSGKI*RSYPRL
Trigger: CAGCCTGGGATATGACCTTCAGATTTTTCCAGAAGA...TCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR TCA 90 bp GGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTATCTTGGTCTTCATATaGGCTCGATATAACTTTGGG +
Preference number: 4 (lower is better)
Translates to: GPIHPWFLHQNFHPCSLLILVFI*ARYNFG
Trigger: CCCAAAGTTATATCGAGCTCATATGAAGACCAAGAT...AAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR TCA 90 bp GGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTGTTATCACACAGCTCTaGTTCCCATTTGAACAAATC +
Preference number: 4 (lower is better)
Translates to: GPIHPWFLHQNFHPCSLLVITQL*FPFEQI
Trigger: GATTTGTTCAAATGGGAATCAGAGCTGTGTGATAAC...AAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR TCA 90 bp CAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCTGCAACAAATTGAAGATGTaGGTGGTATACAGGGAGGTA +
Preference number: 4 (lower is better)
Translates to: QYTHGSCTRISILVLCFCNKLKM*VVYREV
Trigger: TACCTCCCTGTATACCACTCACATCTTCAATTTGTT...GCAGAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR TCA 90 bp GTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCGTAAAAGGCCAAAGATaGAAGAGCCAAAGAAAATCC +
Preference number: 4 (lower is better)
Translates to: VQYTHGSCTRISILVLCFVKGQR*KSQRKS
Trigger: GGATTTTCTTTGGCTCTTTCATCTTTGGCCTTTTAC...GAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR TCA 90 bp TGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCCACAGAGTCTTACACTaGGTAAATGTAGATGCAAGG +
Preference number: 4 (lower is better)
Translates to: CLRSNTPMVLAPEFPSLFHRVLH*VNVDAR
Trigger: CCTTGCATCTACATTTACTCAGTGTAAGACTCTGTG...GAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR GCA 90 bp TACTCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCTGTTTCAGGCCCAACTaGAAAACCTCCTGTTTGAGG +
Preference number: 4 (lower is better)
Translates to: YSCIYLSNTEVIIANPMPCFRPN*KTSCLR
Trigger: CCTCAAACAGGAGGTTTTGCAGTTGGGCCTGAAACA...GGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGAGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR GCA 90 bp ATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGATTTTTCTCAACATCAGTGTCTTaGCAACTCCAGCACCACCAC +
Preference number: 4 (lower is better)
Translates to: IYLSNTEVIIANPMPGFFSTSVS*QLQHHH
Trigger: GTGGTGGTGCTGGAGTTGGCAAGACACTGATGTTGA...GAAAAATCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR GCA 90 bp TTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCCATACAGTGAACAGCTaGTCATTTTCTCTCACCAGA +
Preference number: 4 (lower is better)
Translates to: FEVQYTHGSCTRISILVLHTVNS*SFSLTR
Trigger: TCTGGTGAGAGAAAATGAGCAGCTGTTCACTGTATG...GAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR GCA 90 bp TGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCCAGATAAAAGATAGCTaGACAGACCTCCTGAACAGA +
Preference number: 4 (lower is better)
Translates to: CLRSNTPMVLAPEFPSLFQIKDS*TDLLNR
Trigger: TCTGTTCAGGAGGTCTGTGCAGCTATCTTTTATCTG...GAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR GCA 90 bp TTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTCAGATAAAAGATAGCTaGACAGACCTCCTGAACAGA +
Preference number: 4 (lower is better)
Translates to: LRSNTPMVLAPEFPSLFSQIKDS*TDLLNR
Trigger: TCTGTTCAGGAGGTCTGTGCAGCTATCTTTTATCTG...AGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR GCA 90 bp GGAGGTTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCGAAGAACACATTATTTaGCACAAGAACGTTAAGGGT +
Preference number: 4 (lower is better)
Translates to: GGCLRSNTPMVLAPEFPSEEHII*HKNVKG
Trigger: ACCCTTAACGTTCTTGTGGCAAATAATGTGTTCTTC...GGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAACCTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR GCA 90 bp GTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCGATGCCAAATTAAGATaGTTCAAGGTCTTGTTGCTG +
Preference number: 4 (lower is better)
Translates to: VQYTHGSCTRISILVLCFDAKLR*FKVLLL
Trigger: CAGCAACAAGACCTTGAAGCATCTTAATTTGGCATC...GAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR GCA 90 bp AGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTGATGCCAAATTAAGATaGTTCAAGGTCTTGTTGCTG +
Preference number: 4 (lower is better)
Translates to: RSNTPMVLAPEFPSLFSADAKLR*FKVLLL
Trigger: CAGCAACAAGACCTTGAAGCATCTTAATTTGGCATC...AGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR GCA 90 bp ATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGATTTTTCCTAAGTGCTCGAGAATaGAGTCTGGGTGGCACAAAG +
Preference number: 4 (lower is better)
Translates to: IYLSNTEVIIANPMPGFFLSARE*SLGGTK
Trigger: CTTTGTGCCACCCAGACTGCATTCTCGAGCACTTAG...GAAAAATCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR GCA 90 bp TTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCACAGACTGCTTAGGATaGGCAAGCATGGATTTTTCT +
Preference number: 4 (lower is better)
Translates to: FEVQYTHGSCTRISILVLTDCLG*ASMDFS
Trigger: AGAAAAATCCATGCTTGCGCATCCTAAGCAGTCTGT...GAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp GGAGGTTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTCAGTGCCCTTTGATTaGAAAAGGTTCTCAAAACAA +
Preference number: 4 (lower is better)
Translates to: GGCLRSNTPMVLAPEFPSSVPFD*KRFSKQ
Trigger: TTGTTTTGAGAACCTTTTCCAATCAAAGGGCACTGA...GGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAACCTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp TCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGACAGCAGTACATTCACTaGCTGCTTCTCTGTACAGTT +
Preference number: 4 (lower is better)
Translates to: SCIYLSNTEVIIANPMPGQQYIH*LLLCTV
Trigger: AACTGTACAGAGAAGCAGCCAGTGAATGTACTGCTG...TCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CCA 90 bp TACTCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCACGGCAAATGGAGACTaGGTCTCTTCCCTTCTCTAT +
Preference number: 4 (lower is better)
Translates to: YSCIYLSNTEVIIANPMPTANGD*VSSLLY
Trigger: ATAGAGAAGGGAAGAGACCCAGTCTCCATTTGCCGT...GGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGAGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CCA 90 bp CCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCTGGGAGAATGGGCATTTTaGGGAATGAACAAATTGAAG +
Preference number: 4 (lower is better)
Translates to: PIHPWFLHQNFHPCSLLLGEWAF*GMNKLK
Trigger: CTTCAATTTGTTCATTCCCCAAAATGCCCATTCTCC...CAGAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp GGTTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTTACTTGGAGAATaGGCATTTTGGGGAATGAAC +
Preference number: 4 (lower is better)
Translates to: GCLRSNTPMVLAPEFPSLFLLGE*AFWGMN
Trigger: GTTCATTCCCCAAAATGCCCATTCTCCAAGTAAGAA...CAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp AGGTTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTTTGGCTTTTCTTACTTaGAGAATGGGCATTTTGGGG +
Preference number: 4 (lower is better)
Translates to: RLFEVQYTHGSCTRISILLAFLT*RMGILG
Trigger: CCCCAAAATGCCCATTCTCCAAGTAAGAAAAGCCAA...AAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAACCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp TACTCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCCCCTGCAGCTGGTCTTaGCTTTTCTTACTTGGAGAA +
Preference number: 4 (lower is better)
Translates to: YSCIYLSNTEVIIANPMPPCSWS*LFLLGE
Trigger: TTCTCCAAGTAAGAAAAGCCAAGACCAGCTGCAGGG...GGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGAGTA
43% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CCA 90 bp GGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCAGTGTTTTAAGCAGTaGGCAGCAACAATAACATCA +
Preference number: 4 (lower is better)
Translates to: GPIHPWFLHQNFHPCSLLQCFKQ*AATITS
Trigger: TGATGTTATTGTTGCTGCCCACTGCTTAAAACACTG...AAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp CCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCTGCAGTGTTTTAAGCAGTaGGCAGCAACAATAACATCA +
Preference number: 4 (lower is better)
Translates to: PIHPWFLHQNFHPCSLLLQCFKQ*AATITS
Trigger: TGATGTTATTGTTGCTGCCCACTGCTTAAAACACTG...CAGAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp TACTCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCAGGCTGACCAGGTTCTaGTTGTTCCTCAAGACTTCA +
Preference number: 4 (lower is better)
Translates to: YSCIYLSNTEVIIANPMPRLTRF*LFLKTS
Trigger: TGAAGTCTTGAGGAACAACCAGAACCTGGTCAGCCT...GGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGAGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR TCA 90 bp TCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGAGCTCTGATTCCCATTTaGACAAATCACATTCCATCC +
Preference number: 4 (lower is better)
Translates to: SCIYLSNTEVIIANPMPGALIPI*TNHIPS
Trigger: GGATGGAATGTGATTTGTTCAAATGGGAATCAGAGC...TCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR TCA 90 bp ATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGATTTTTCGGACCTGACATACAGTaGACAGCTGCTCATTTTCTC +
Preference number: 4 (lower is better)
Translates to: IYLSNTEVIIANPMPGFFGPDIQ*TAAHFL
Trigger: GAGAAAATGAGCAGCTGTTCACTGTATGTCAGGTCC...GAAAAATCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR TCA 90 bp ACAAAGAATCAAGTCAGATCAGTCTTTTTCAGAATCTCAGTTTGGCCATCATCTGCTGCACAGACCTCCTaGACAGATGGATGGAGAAAT +
Preference number: 4 (lower is better)
Translates to: TKNQVRSVFFRISVWPSSAAQTS*TDGWRN
Trigger: ATTTCTCCATCCATCTGTTCAGGAGGTCTGTGCAGC...AGATGATGGCCAAACTGAGATTCTGAAAAAGACTGATCTGACTTGATTCTTTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068767.10
CDS-3UTR TCA 90 bp TTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGTAAAAGGCCAAAGATaGAAGAGCCAAAGAAAATCC +
Preference number: 4 (lower is better)
Translates to: LRSNTPMVLAPEFPSLFSVKGQR*KSQRKS
Trigger: GGATTTTCTTTGGCTCTTTCATCTTTGGCCTTTTAC...AGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR TCA 90 bp TACTCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCAACACAGAGCAAATATaGTTCCAAGCAGTGAGCAGC +
Preference number: 4 (lower is better)
Translates to: YSCIYLSNTEVIIANPMPNTEQI*FQAVSS
Trigger: GCTGCTCACTGCTTGGAATCATATTTGCTCTGTGTT...GGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGAGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR TCA 90 bp GTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCTGTAAATTGCAGTTCTaGATCAACTCAAAGAACAGG +
Preference number: 4 (lower is better)
Translates to: VQYTHGSCTRISILVLCFCKLQF*INSKNR
Trigger: CCTGTTCTTTGAGTTGATTCAGAACTGCAATTTACA...GAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR GCA 90 bp TGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCAGTACATTCACTGGCTaGTTCTCTGTACAGTTATCA +
Preference number: 4 (lower is better)
Translates to: CLRSNTPMVLAPEFPSLFSTFTG*FSVQLS
Trigger: TGATAACTGTACAGAGAAGCAGCCAGTGAATGTACT...GAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR GCA 90 bp TCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGACAGATAAAAGATAGCTaGACAGACCTCCTGAACAGA +
Preference number: 4 (lower is better)
Translates to: SCIYLSNTEVIIANPMPGQIKDS*TDLLNR
Trigger: TCTGTTCAGGAGGTCTGTGCAGCTATCTTTTATCTG...TCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR GCA 90 bp CAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCTGCGAAGAACACATTATTTaGCACAAGAACGTTAAGGGT +
Preference number: 4 (lower is better)
Translates to: QYTHGSCTRISILVLCFCEEHII*HKNVKG
Trigger: ACCCTTAACGTTCTTGTGGCAAATAATGTGTTCTTC...GCAGAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR GCA 90 bp TACTCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCTTCTATGTTGCACTCTaGCTGGCTCAAGACATCACA +
Preference number: 4 (lower is better)
Translates to: YSCIYLSNTEVIIANPMPFYVAL*LAQDIT
Trigger: TGTGATGTCTTGAGCCAGGCAGAGTGCAACATAGAA...GGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGAGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CCA 90 bp TCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGATGTCATGGGTCATCTTaGTCTTCATATGAGCTCGAT +
Preference number: 4 (lower is better)
Translates to: SCIYLSNTEVIIANPMPGCHGSS*SSYELD
Trigger: ATCGAGCTCATATGAAGACCAAGATGACCCATGACA...TCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CCA 90 bp TTACCTGCACATTTAAGATCTCAGTTTATCCCTATCAAGAAGATCAGAGGCCAGGCTCTGGAACTGTCATaGGTCATCTTGGTCTTCATA +
Preference number: 4 (lower is better)
Translates to: LPAHLRSQFIPIKKIRGQALELS*VILVFI
Trigger: TATGAAGACCAAGATGACCCATGACAGTTCCAGAGC...CTGGCCTCTGATCTTCTTGATAGGGATAAACTGAGATCTTAAATGTGCAGGTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CCA 90 bp TTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCGCTCTGTTCCTATCTTaGAATAATCTGTGGAAACTC +
Preference number: 4 (lower is better)
Translates to: FEVQYTHGSCTRISILVLALFLS*NNLWKL
Trigger: GAGTTTCCACAGATTATTCCAAGATAGGAACAGAGC...GAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp ATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGATTTTTCAGACTGAAGGCTTCATaGGCTCTGTTCCTATCTTGG +
Preference number: 4 (lower is better)
Translates to: IYLSNTEVIIANPMPGFFRLKAS*ALFLSW
Trigger: CCAAGATAGGAACAGAGCCCATGAAGCCTTCAGTCT...GAAAAATCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CCA 90 bp TCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCTGGAGAATGGGCATTTTaGGGAATGAACAAATTGAAG +
Preference number: 4 (lower is better)
Translates to: SNTPMVLAPEFPSLFSASGEWAF*GMNKLK
Trigger: CTTCAATTTGTTCATTCCCCAAAATGCCCATTCTCC...AGAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp AAAAACGGCAACAGTTTCCATGATCTGAGTGTCCAGTCTAGGGCCTCTGCTAAAGACCTCCTGAACAGATaGATGGAGAAATATATAAGA +
Preference number: 4 (lower is better)
Translates to: KNGNSFHDLSVQSRASAKDLLNR*MEKYIR
Trigger: TCTTATATATTTCTCCATCCATCTGTTCAGGAGGTC...TTTAGCAGAGGCCCTAGACTGGACACTCAGATCATGGAAACTGTTGCCGTTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068767.10
CDS-3UTR CCA 90 bp GGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTGACCTCCTGAACAGATaGATGGAGAAATATATAAGA +
Preference number: 4 (lower is better)
Translates to: GPIHPWFLHQNFHPCSLLDLLNR*MEKYIR
Trigger: TCTTATATATTTCTCCATCCATCTGTTCAGGAGGTC...AAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp TCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGACCACTCAGGACATTCTaGGTTGAAAAGGATAGTTTC +
Preference number: 4 (lower is better)
Translates to: SCIYLSNTEVIIANPMPGPLRTF*VEKDSF
Trigger: GAAACTATCCTTTTCAACCCAGAATGTCCTGAGTGG...TCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
3UTR CAA 72 bp AACTTCCCCAACAATCTTTTAGGGTACCACTACTGCTaGGACCTACTCTATGGCTCCAGTAATCTACTAAAA +
Preference number: 4 (lower is better)
Translates to: NFPNNLLGYHYC*DLLYGSSNLLK
Trigger: TTTTAGTAGATTACTGGAGCCATAGAGTAGGTCCAAGCAGTAGTGGTACCCTAAAAGATTGTTGGGGAAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068767.10
CDS-3UTR TCA 90 bp TTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTATCTTGGTCTTCATATaGGCTCGATATAACTTTGGG +
Preference number: 4 (lower is better)
Translates to: LFEVQYTHGSCTRISILVILVFI*ARYNFG
Trigger: CCCAAAGTTATATCGAGCTCATATGAAGACCAAGAT...AACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR TCA 90 bp TTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTGTTATCACACAGCTCTaGTTCCCATTTGAACAAATC +
Preference number: 4 (lower is better)
Translates to: LFEVQYTHGSCTRISILVVITQL*FPFEQI
Trigger: GATTTGTTCAAATGGGAATCAGAGCTGTGTGATAAC...AACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR TCA 90 bp TTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTAACAAATTGAAGATGTaGGTGGTATACAGGGAGGTA +
Preference number: 4 (lower is better)
Translates to: LFEVQYTHGSCTRISILVNKLKM*VVYREV
Trigger: TACCTCCCTGTATACCACTCACATCTTCAATTTGTT...AACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR TCA 90 bp TGCTTGGACCTACTCTATGGCTCCAGTAATCTACTAAAAGGTAAATTTCATTTTCCCAGCATTTCTCATTaGGGGAGCAGTTGGCCAAAA +
Preference number: 4 (lower is better)
Translates to: CLDLLYGSSNLLKGKFHFPSISH*GSSWPK
Trigger: TTTTGGCCAACTGCTCCCTCAATGAGAAATGCTGGG...AAAATGAAATTTACCTTTTAGTAGATTACTGGAGCCATAGAGTAGGTCCAAGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000068767.10
CDS-3UTR TCA 90 bp ATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGATTTTTCCCGCCTAAGAACTTCTaGAAGGTAATCCCAGCATTT +
Preference number: 4 (lower is better)
Translates to: IYLSNTEVIIANPMPGFFPPKNF*KVIPAF
Trigger: AAATGCTGGGATTACCTTTCAGAAGTTCTTAGGCGG...GAAAAATCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR GCA 90 bp GGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTATCAATCTCTCTTTTTaGTCTCTCTATGAGATCCTT +
Preference number: 4 (lower is better)
Translates to: GPIHPWFLHQNFHPCSLLINLSF*SLYEIL
Trigger: AAGGATCTCATAGAGAGAGCAAAAAGAGAGATTGAT...AAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR GCA 90 bp TTACCTGCACATTTAAGATCTCAGTTTATCCCTATCAAGAAGATCAGAGGCCAGGTGGCTTTGATTCAGTaGCCTTTGATTGGAAAAGGT +
Preference number: 4 (lower is better)
Translates to: LPAHLRSQFIPIKKIRGQVALIQ*PLIGKG
Trigger: ACCTTTTCCAATCAAAGGGCACTGAATCAAAGCCAC...CTGGCCTCTGATCTTCTTGATAGGGATAAACTGAGATCTTAAATGTGCAGGTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR GCA 90 bp TTACCTGCACATTTAAGATCTCAGTTTATCCCTATCAAGAAGATCAGAGGCCAGCATACAGTGAACAGCTaGTCATTTTCTCTCACCAGA +
Preference number: 4 (lower is better)
Translates to: LPAHLRSQFIPIKKIRGQHTVNS*SFSLTR
Trigger: TCTGGTGAGAGAAAATGAGCAGCTGTTCACTGTATG...CTGGCCTCTGATCTTCTTGATAGGGATAAACTGAGATCTTAAATGTGCAGGTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR GCA 90 bp AAAAACGGCAACAGTTTCCATGATCTGAGTGTCCAGTCTAGGGCCTCTGCTAAATCAAGTGCTGTAAATTaGAGTTCTGAATCAACTCAA +
Preference number: 4 (lower is better)
Translates to: KNGNSFHDLSVQSRASAKSSAVN*SSESTQ
Trigger: TTGAGTTGATTCAGAACTGCAATTTACAGCACTTGA...TTTAGCAGAGGCCCTAGACTGGACACTCAGATCATGGAAACTGTTGCCGTTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068767.10
CDS-3UTR GCA 90 bp GGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTTCAAGTGCTGTAAATTaGAGTTCTGAATCAACTCAA +
Preference number: 4 (lower is better)
Translates to: GPIHPWFLHQNFHPCSLLSSAVN*SSESTQ
Trigger: TTGAGTTGATTCAGAACTGCAATTTACAGCACTTGA...AAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp AGGTTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTTCAGTGCCCTTTGATTaGAAAAGGTTCTCAAAACAA +
Preference number: 4 (lower is better)
Translates to: RLFEVQYTHGSCTRISILSVPFD*KRFSKQ
Trigger: TTGTTTTGAGAACCTTTTCCAATCAAAGGGCACTGA...AAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAACCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp ACAAAGAATCAAGTCAGATCAGTCTTTTTCAGAATCTCAGTTTGGCCATCATCTACGGCAAATGGAGACTaGGTCTCTTCCCTTCTCTAT +
Preference number: 4 (lower is better)
Translates to: TKNQVRSVFFRISVWPSSTANGD*VSSLLY
Trigger: ATAGAGAAGGGAAGAGACCCAGTCTCCATTTGCCGT...AGATGATGGCCAAACTGAGATTCTGAAAAAGACTGATCTGACTTGATTCTTTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068767.10
CDS-3UTR CCA 90 bp TCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGAGGAGAATGGGCATTTTaGGGAATGAACAAATTGAAG +
Preference number: 4 (lower is better)
Translates to: SCIYLSNTEVIIANPMPGGEWAF*GMNKLK
Trigger: CTTCAATTTGTTCATTCCCCAAAATGCCCATTCTCC...TCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CCA 90 bp TCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGACAGTGTTTTAAGCAGTaGGCAGCAACAATAACATCA +
Preference number: 4 (lower is better)
Translates to: SCIYLSNTEVIIANPMPGQCFKQ*AATITS
Trigger: TGATGTTATTGTTGCTGCCCACTGCTTAAAACACTG...TCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR TCA 90 bp TTACCTGCACATTTAAGATCTCAGTTTATCCCTATCAAGAAGATCAGAGGCCAGGTTATCACACAGCTCTaGTTCCCATTTGAACAAATC +
Preference number: 4 (lower is better)
Translates to: LPAHLRSQFIPIKKIRGQVITQL*FPFEQI
Trigger: GATTTGTTCAAATGGGAATCAGAGCTGTGTGATAAC...CTGGCCTCTGATCTTCTTGATAGGGATAAACTGAGATCTTAAATGTGCAGGTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR TCA 90 bp TACTCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGTAAAAGGCCAAAGATaGAAGAGCCAAAGAAAATCC +
Preference number: 4 (lower is better)
Translates to: YSCIYLSNTEVIIANPMPVKGQR*KSQRKS
Trigger: GGATTTTCTTTGGCTCTTTCATCTTTGGCCTTTTAC...GGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGAGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR TCA 90 bp TTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTTGTAAATTGCAGTTCTaGATCAACTCAAAGAACAGG +
Preference number: 4 (lower is better)
Translates to: LFEVQYTHGSCTRISILVCKLQF*INSKNR
Trigger: CCTGTTCTTTGAGTTGATTCAGAACTGCAATTTACA...AACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR TCA 90 bp TCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGATGTAAATTGCAGTTCTaGATCAACTCAAAGAACAGG +
Preference number: 4 (lower is better)
Translates to: SCIYLSNTEVIIANPMPGCKLQF*INSKNR
Trigger: CCTGTTCTTTGAGTTGATTCAGAACTGCAATTTACA...TCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR TCA 90 bp ATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGATTTTTCCACAGAGTCTTACACTaGGTAAATGTAGATGCAAGG +
Preference number: 4 (lower is better)
Translates to: IYLSNTEVIIANPMPGFFHRVLH*VNVDAR
Trigger: CCTTGCATCTACATTTACTCAGTGTAAGACTCTGTG...GAAAAATCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR GCA 90 bp TTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCATCAATCTCTCTTTTTaGTCTCTCTATGAGATCCTT +
Preference number: 4 (lower is better)
Translates to: FEVQYTHGSCTRISILVLINLSF*SLYEIL
Trigger: AAGGATCTCATAGAGAGAGCAAAAAGAGAGATTGAT...GAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR GCA 90 bp TTACCTGCACATTTAAGATCTCAGTTTATCCCTATCAAGAAGATCAGAGGCCAGAGTACATTCACTGGCTaGTTCTCTGTACAGTTATCA +
Preference number: 4 (lower is better)
Translates to: LPAHLRSQFIPIKKIRGQSTFTG*FSVQLS
Trigger: TGATAACTGTACAGAGAAGCAGCCAGTGAATGTACT...CTGGCCTCTGATCTTCTTGATAGGGATAAACTGAGATCTTAAATGTGCAGGTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR GCA 90 bp TCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGAGAAGAACACATTATTTaGCACAAGAACGTTAAGGGT +
Preference number: 4 (lower is better)
Translates to: SCIYLSNTEVIIANPMPGEEHII*HKNVKG
Trigger: ACCCTTAACGTTCTTGTGGCAAATAATGTGTTCTTC...TCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CCA 90 bp TTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTTCCTGTTGATCTTCTaGAAAAATCTGAAGGTCATA +
Preference number: 4 (lower is better)
Translates to: FEVQYTHGSCTRISILVLFLLIF*KNLKVI
Trigger: TATGACCTTCAGATTTTTCCAGAAGATCAACAGGAA...GAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp TCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCTTTCCTGTTGATCTTCTaGAAAAATCTGAAGGTCATA +
Preference number: 4 (lower is better)
Translates to: SNTPMVLAPEFPSLFSASFLLIF*KNLKVI
Trigger: TATGACCTTCAGATTTTTCCAGAAGATCAACAGGAA...AGAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CCA 90 bp TGCTTGGACCTACTCTATGGCTCCAGTAATCTACTAAAAGGTAAATTTCATTTTTTTGTGCAGAAACACTaGGCTTTCTATCCAGGCCAG +
Preference number: 4 (lower is better)
Translates to: CLDLLYGSSNLLKGKFHFFVQKH*AFYPGQ
Trigger: CTGGCCTGGATAGAAAGCCCAGTGTTTCTGCACAAA...AAAATGAAATTTACCTTTTAGTAGATTACTGGAGCCATAGAGTAGGTCCAAGCA
40% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000068767.10
CDS-3UTR CCA 90 bp TTACCTGCACATTTAAGATCTCAGTTTATCCCTATCAAGAAGATCAGAGGCCAGGCTCTGTTCCTATCTTaGAATAATCTGTGGAAACTC +
Preference number: 4 (lower is better)
Translates to: LPAHLRSQFIPIKKIRGQALFLS*NNLWKL
Trigger: GAGTTTCCACAGATTATTCCAAGATAGGAACAGAGC...CTGGCCTCTGATCTTCTTGATAGGGATAAACTGAGATCTTAAATGTGCAGGTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CCA 90 bp TTACCTGCACATTTAAGATCTCAGTTTATCCCTATCAAGAAGATCAGAGGCCAGTTCTTACTTGGAGAATaGGCATTTTGGGGAATGAAC +
Preference number: 4 (lower is better)
Translates to: LPAHLRSQFIPIKKIRGQFLLGE*AFWGMN
Trigger: GTTCATTCCCCAAAATGCCCATTCTCCAAGTAAGAA...CTGGCCTCTGATCTTCTTGATAGGGATAAACTGAGATCTTAAATGTGCAGGTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CCA 90 bp ATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGATTTTTCTTGGCTTTTCTTACTTaGAGAATGGGCATTTTGGGG +
Preference number: 4 (lower is better)
Translates to: IYLSNTEVIIANPMPGFFLAFLT*RMGILG
Trigger: CCCCAAAATGCCCATTCTCCAAGTAAGAAAAGCCAA...GAAAAATCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
3UTR CAA 72 bp CATGCAGCGGTCAGAGGTCAACATCAGGTATTATACTaGATTTTTGAGAAAGGGTCTCTAACCAATTTGAGT +
Preference number: 4 (lower is better)
Translates to: HAAVRGQHQVLY*IFEKGSLTNLS
Trigger: ACTCAAATTGGTTAGAGACCCTTTCTCAAAAATCAAGTATAATACCTGATGTTGACCTCTGACCGCTGCATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR TCA 90 bp ATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGATTTTTCAACAAATTGAAGATGTaGGTGGTATACAGGGAGGTA +
Preference number: 4 (lower is better)
Translates to: IYLSNTEVIIANPMPGFFNKLKM*VVYREV
Trigger: TACCTCCCTGTATACCACTCACATCTTCAATTTGTT...GAAAAATCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR GCA 90 bp ACAAAGAATCAAGTCAGATCAGTCTTTTTCAGAATCTCAGTTTGGCCATCATCTCATACAGTGAACAGCTaGTCATTTTCTCTCACCAGA +
Preference number: 4 (lower is better)
Translates to: TKNQVRSVFFRISVWPSSHTVNS*SFSLTR
Trigger: TCTGGTGAGAGAAAATGAGCAGCTGTTCACTGTATG...AGATGATGGCCAAACTGAGATTCTGAAAAAGACTGATCTGACTTGATTCTTTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068767.10
CDS-3UTR GCA 90 bp ATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGATTTTTCGATGCCAAATTAAGATaGTTCAAGGTCTTGTTGCTG +
Preference number: 4 (lower is better)
Translates to: IYLSNTEVIIANPMPGFFDAKLR*FKVLLL
Trigger: CAGCAACAAGACCTTGAAGCATCTTAATTTGGCATC...GAAAAATCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CCA 90 bp TGCTTGGACCTACTCTATGGCTCCAGTAATCTACTAAAAGGTAAATTTCATTTTCAGCAGTACATTCACTaGCTGCTTCTCTGTACAGTT +
Preference number: 4 (lower is better)
Translates to: CLDLLYGSSNLLKGKFHFQQYIH*LLLCTV
Trigger: AACTGTACAGAGAAGCAGCCAGTGAATGTACTGCTG...AAAATGAAATTTACCTTTTAGTAGATTACTGGAGCCATAGAGTAGGTCCAAGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068767.10
CDS-3UTR GCA 90 bp TACTCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCTCAAGTGCTGTAAATTaGAGTTCTGAATCAACTCAA +
Preference number: 4 (lower is better)
Translates to: YSCIYLSNTEVIIANPMPSSAVN*SSESTQ
Trigger: TTGAGTTGATTCAGAACTGCAATTTACAGCACTTGA...GGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGAGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CCA 90 bp TACTCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCTTCCTGTTGATCTTCTaGAAAAATCTGAAGGTCATA +
Preference number: 4 (lower is better)
Translates to: YSCIYLSNTEVIIANPMPFLLIF*KNLKVI
Trigger: TATGACCTTCAGATTTTTCCAGAAGATCAACAGGAA...GGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGAGTA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CCA 90 bp ATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGATTTTTCTCAGTGCCCTTTGATTaGAAAAGGTTCTCAAAACAA +
Preference number: 4 (lower is better)
Translates to: IYLSNTEVIIANPMPGFFSVPFD*KRFSKQ
Trigger: TTGTTTTGAGAACCTTTTCCAATCAAAGGGCACTGA...GAAAAATCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CCA 90 bp ACAAAGAATCAAGTCAGATCAGTCTTTTTCAGAATCTCAGTTTGGCCATCATCTTTCTTACTTGGAGAATaGGCATTTTGGGGAATGAAC +
Preference number: 4 (lower is better)
Translates to: TKNQVRSVFFRISVWPSSFLLGE*AFWGMN
Trigger: GTTCATTCCCCAAAATGCCCATTCTCCAAGTAAGAA...AGATGATGGCCAAACTGAGATTCTGAAAAAGACTGATCTGACTTGATTCTTTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000068767.10
CDS-3UTR CCA 90 bp ATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGATTTTTCGACCTCCTGAACAGATaGATGGAGAAATATATAAGA +
Preference number: 4 (lower is better)
Translates to: IYLSNTEVIIANPMPGFFDLLNR*MEKYIR
Trigger: TCTTATATATTTCTCCATCCATCTGTTCAGGAGGTC...GAAAAATCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS GCA 90 bp GGCTTTCTATCCAGGCCAGCATTAACCTCTTCAACATCAGTGTCTTaGCAACTCCAGCACCACCACTCAGGAACACCACCTGTGGCTTTG +
Preference number: 5 (lower is better)
Translates to: GFLSRPALTSSTSVS*QLQHHHSGTPPVAL
Trigger: CAAAGCCACAGGTGGTGTTCCTGAGTGGTGGTGCTGGAGTTGGCAAGACACTGATGTTGAAGAGGTTAATGCTGGCCTGGATAGAAAGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS CCA 90 bp CAGGCACCAGTTAGCTCACAGGCTTCCAACCCAAGATCCTCTAAGTaGCAGTTGGGATGTTTTATAGCATCACACAGCAGCTTCACACCA +
Preference number: 5 (lower is better)
Translates to: QAPVSSQASNPRSSK*QLGCFIASHSSFTP
Trigger: TGGTGTGAAGCTGCTGTGTGATGCTATAAAACATCCCAACTGCCACTTAGAGGATCTTGGGTTGGAAGCCTGTGAGCTAACTGGTGCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS-3UTR CAA 90 bp GAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCCTGACCAGGTTCTGGTaGTTCCTCAAGACTTCAGCC +
Preference number: 5 (lower is better)
Translates to: EVQYTHGSCTRISILVLCLTRFW*FLKTSA
Trigger: GGCTGAAGTCTTGAGGAACAACCAGAACCTGGTCAG...GCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS TCA 90 bp GCTTCACACCAGTGTCTTCTAGTTTATTGTTCGAAACTTGTAGGCTaGCCAGGTTCTGGTTGTTCCTCAAGACTTCAGCCAGGTCCTGGC +
Preference number: 5 (lower is better)
Translates to: ASHQCLLVYCSKLVG*PGSGCSSRLQPGPG
Trigger: GCCAGGACCTGGCTGAAGTCTTGAGGAACAACCAGAACCTGGTCAGCCTACAAGTTTCGAACAATAAACTAGAAGACACTGGTGTGAAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS CCA 90 bp AGGCTGACCAGGTTCTGGTTGTTCCTCAAGACTTCAGCCAGGTCCTaGCAACCACTAATGGTGATGAGACAATGTCTCAAACTTAGTGAC +
Preference number: 5 (lower is better)
Translates to: RLTRFWLFLKTSARS*QPLMVMRQCLKLSD
Trigger: GTCACTAAGTTTGAGACATTGTCTCATCACCATTAGTGGTTGCCAGGACCTGGCTGAAGTCTTGAGGAACAACCAGAACCTGGTCAGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS-3UTR CAA 90 bp GAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTCCCAGCATTTCTCATaGAGGGAGCAGTTGGCCAAA +
Preference number: 5 (lower is better)
Translates to: EVQYTHGSCTRISILVLCSQHFS*REQLAK
Trigger: TTTGGCCAACTGCTCCCTCAATGAGAAATGCTGGGA...GCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS CCA 90 bp CACTCTGCCTGGCTCAAGACATCACACAACAGTTTCACATCACTGTaGGAGAGAATTGTGAGGCTGAGGTTCAAGTGCTGTAAATTGCAG +
Preference number: 5 (lower is better)
Translates to: HSAWLKTSHNSFTSL*ERIVRLRFKCCKLQ
Trigger: CTGCAATTTACAGCACTTGAACCTCAGCCTCACAATTCTCTCCCACAGTGATGTGAAACTGTTGTGTGATGTCTTGAGCCAGGCAGAGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS-3UTR CAA 90 bp TTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCGCCCTGCAGCTGGTCTaGGCTTTTCTTACTTGGAGA +
Preference number: 5 (lower is better)
Translates to: FEVQYTHGSCTRISILVLALQLV*AFLTWR
Trigger: TCTCCAAGTAAGAAAAGCCAAGACCAGCTGCAGGGC...GAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CAA 90 bp AAAAACGGCAACAGTTTCCATGATCTGAGTGTCCAGTCTAGGGCCTCTGCTAAATGCTTCAAGGTCTTGTaGCTGATCAGGACAGAGGCA +
Preference number: 5 (lower is better)
Translates to: KNGNSFHDLSVQSRASAKCFKVL*LIRTEA
Trigger: TGCCTCTGTCCTGATCAGCAACAAGACCTTGAAGCA...TTTAGCAGAGGCCCTAGACTGGACACTCAGATCATGGAAACTGTTGCCGTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068767.10
CDS-3UTR CAA 90 bp TTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCCTGACCAGGTTCTGGTaGTTCCTCAAGACTTCAGCC +
Preference number: 5 (lower is better)
Translates to: FEVQYTHGSCTRISILVLLTRFW*FLKTSA
Trigger: GGCTGAAGTCTTGAGGAACAACCAGAACCTGGTCAG...GAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS TCA 90 bp TCCAAGGCATTCTTCAGTAGGTTCATTGCCCACAGAGTCTTACACTaGGTAAATGTAGATGCAAGGTCCTCACAACAGGCACCAGTTAGC +
Preference number: 5 (lower is better)
Translates to: SKAFFSRFIAHRVLH*VNVDARSSQQAPVS
Trigger: GCTAACTGGTGCCTGTTGTGAGGACCTTGCATCTACATTTACTCAGTGTAAGACTCTGTGGGCAATGAACCTACTGAAGAATGCCTTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS GCA 90 bp CTCCAGCACCACCACTCAGGAACACCACCTGTGGCTTTGATTCAGTaGCCTTTGATTGGAAAAGGTTCTCAAAACAATCATAGTCATCCT +
Preference number: 5 (lower is better)
Translates to: LQHHHSGTPPVALIQ*PLIGKGSQNNHSHP
Trigger: AGGATGACTATGATTGTTTTGAGAACCTTTTCCAATCAAAGGGCACTGAATCAAAGCCACAGGTGGTGTTCCTGAGTGGTGGTGCTGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS-3UTR CAA 90 bp GTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCACACCACCTGTGGCTTaGATTCAGTGCCCTTTGATT +
Preference number: 5 (lower is better)
Translates to: VQYTHGSCTRISILVLCFTPPVA*IQCPLI
Trigger: AATCAAAGGGCACTGAATCAAAGCCACAGGTGGTGT...GAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CAA 90 bp TTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTGCCCTGCAGCTGGTCTaGGCTTTTCTTACTTGGAGA +
Preference number: 5 (lower is better)
Translates to: LFEVQYTHGSCTRISILVALQLV*AFLTWR
Trigger: TCTCCAAGTAAGAAAAGCCAAGACCAGCTGCAGGGC...AACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CAA 90 bp TCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGAGCCCTGCAGCTGGTCTaGGCTTTTCTTACTTGGAGA +
Preference number: 5 (lower is better)
Translates to: SCIYLSNTEVIIANPMPGALQLV*AFLTWR
Trigger: TCTCCAAGTAAGAAAAGCCAAGACCAGCTGCAGGGC...TCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CAA 90 bp AGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTACAAGTTCTTCTATGTaGCACTCTGCCTGGCTCAAG +
Preference number: 5 (lower is better)
Translates to: RSNTPMVLAPEFPSLFSATSSSM*HSAWLK
Trigger: CTTGAGCCAGGCAGAGTGCAACATAGAAGAACTTGT...AGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CAA 90 bp TGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTGCTTCAAGGTCTTGTaGCTGATCAGGACAGAGGCA +
Preference number: 5 (lower is better)
Translates to: CLRSNTPMVLAPEFPSLFCFKVL*LIRTEA
Trigger: TGCCTCTGTCCTGATCAGCAACAAGACCTTGAAGCA...GAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CAA 90 bp TTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTGGGTGGCACAAAGACTaGCACAGTGAGGCTATTCCT +
Preference number: 5 (lower is better)
Translates to: LFEVQYTHGSCTRISILVGWHKD*HSEAIP
Trigger: AGGAATAGCCTCACTGTGCAAGTCTTTGTGCCACCC...AACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CAA 90 bp TCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGAGGGTGGCACAAAGACTaGCACAGTGAGGCTATTCCT +
Preference number: 5 (lower is better)
Translates to: SCIYLSNTEVIIANPMPGGWHKD*HSEAIP
Trigger: AGGAATAGCCTCACTGTGCAAGTCTTTGTGCCACCC...TCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS CCA 90 bp ATACTACAAGCTGCTACCACAAGTTCTTCTATGTTGCACTCTGCCTaGCTCAAGACATCACACAACAGTTTCACATCACTGTGGGAGAGA +
Preference number: 5 (lower is better)
Translates to: ILQAATTSSSMLHSA*LKTSHNSFTSLWER
Trigger: TCTCTCCCACAGTGATGTGAAACTGTTGTGTGATGTCTTGAGCCAGGCAGAGTGCAACATAGAAGAACTTGTGGTAGCAGCTTGTAGTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS-3UTR CAA 90 bp TCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCTACACCACCTGTGGCTTaGATTCAGTGCCCTTTGATT +
Preference number: 5 (lower is better)
Translates to: SNTPMVLAPEFPSLFSASTPPVA*IQCPLI
Trigger: AATCAAAGGGCACTGAATCAAAGCCACAGGTGGTGT...AGAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CAA 90 bp AAAAACGGCAACAGTTTCCATGATCTGAGTGTCCAGTCTAGGGCCTCTGCTAAACTGACGTTTTATTTCTaGGGACAACTGGTGGCCAAA +
Preference number: 5 (lower is better)
Translates to: KNGNSFHDLSVQSRASAKLTFYF*GQLVAK
Trigger: TTTGGCCACCAGTTGTCCCAAGAAATAAAACGTCAG...TTTAGCAGAGGCCCTAGACTGGACACTCAGATCATGGAAACTGTTGCCGTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068767.10
CDS-3UTR CAA 90 bp GGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCTGACGTTTTATTTCTaGGGACAACTGGTGGCCAAA +
Preference number: 5 (lower is better)
Translates to: GPIHPWFLHQNFHPCSLLLTFYF*GQLVAK
Trigger: TTTGGCCACCAGTTGTCCCAAGAAATAAAACGTCAG...AAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CAA 90 bp TGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCACAAGTTCTTCTATGTaGCACTCTGCCTGGCTCAAG +
Preference number: 5 (lower is better)
Translates to: CLRSNTPMVLAPEFPSLFTSSSM*HSAWLK
Trigger: CTTGAGCCAGGCAGAGTGCAACATAGAAGAACTTGT...GAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CAA 90 bp GGTTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGCCTTTGTCCAAGGTGTaGGATGCCAAATTAAGATGC +
Preference number: 5 (lower is better)
Translates to: GCLRSNTPMVLAPEFPSLPLSKV*DAKLRC
Trigger: GCATCTTAATTTGGCATCCAACACCTTGGACAAAGG...CAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CAA 90 bp CAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCTGCTCTTCAGTAGGTTCATaGCCCACAGAGTCTTACACT +
Preference number: 5 (lower is better)
Translates to: QYTHGSCTRISILVLCFCSSVGS*PTESYT
Trigger: AGTGTAAGACTCTGTGGGCAATGAACCTACTGAAGA...GCAGAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CAA 90 bp CCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCTGTCTTCAGTAGGTTCATaGCCCACAGAGTCTTACACT +
Preference number: 5 (lower is better)
Translates to: PIHPWFLHQNFHPCSLLLSSVGS*PTESYT
Trigger: AGTGTAAGACTCTGTGGGCAATGAACCTACTGAAGA...CAGAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS GCA 90 bp GATGCCTTCTTCACTTCTGTCCAAGAAACCTGTTTCAGGCCCAACTaGAAAACCTCCTGTTTGAGGAACTCCTTAAACTTTACGAATTCC +
Preference number: 5 (lower is better)
Translates to: DAFFTSVQETCFRPN*KTSCLRNSLNFTNS
Trigger: GGAATTCGTAAAGTTTAAGGAGTTCCTCAAACAGGAGGTTTTGCAGTTGGGCCTGAAACAGGTTTCTTGGACAGAAGTGAAGAAGGCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS-3UTR CAA 90 bp GAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCAAGAGTTTCTCAGGTTaGGATAGTATCTCCTCTATG +
Preference number: 5 (lower is better)
Translates to: EVQYTHGSCTRISILVLCKSFSG*DSISSM
Trigger: CATAGAGGAGATACTATCCAAACCTGAGAAACTCTT...GCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CAA 90 bp GGAGGTTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCAAGAGTTTCTCAGGTTaGGATAGTATCTCCTCTATG +
Preference number: 5 (lower is better)
Translates to: GGCLRSNTPMVLAPEFPSKSFSG*DSISSM
Trigger: CATAGAGGAGATACTATCCAAACCTGAGAAACTCTT...GGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAACCTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CAA 90 bp TTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTGCCATCTATCTGTTCTaGAAGCTCTTCGTTGCCACT +
Preference number: 5 (lower is better)
Translates to: LFEVQYTHGSCTRISILVAIYLF*KLFVAT
Trigger: AGTGGCAACGAAGAGCTTCAAGAACAGATAGATGGC...AACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CAA 90 bp TCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGAACAAGTTCTTCTATGTaGCACTCTGCCTGGCTCAAG +
Preference number: 5 (lower is better)
Translates to: SCIYLSNTEVIIANPMPGTSSSM*HSAWLK
Trigger: CTTGAGCCAGGCAGAGTGCAACATAGAAGAACTTGT...TCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CAA 90 bp GGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTACAGAGGCAAACACCTaGCAGTCATCAGATGAAATA +
Preference number: 5 (lower is better)
Translates to: GPIHPWFLHQNFHPCSLLTEANT*QSSDEI
Trigger: TATTTCATCTGATGACTGCAAGGTGTTTGCCTCTGT...AAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CAA 90 bp TTACCTGCACATTTAAGATCTCAGTTTATCCCTATCAAGAAGATCAGAGGCCAGTGCTTCAAGGTCTTGTaGCTGATCAGGACAGAGGCA +
Preference number: 5 (lower is better)
Translates to: LPAHLRSQFIPIKKIRGQCFKVL*LIRTEA
Trigger: TGCCTCTGTCCTGATCAGCAACAAGACCTTGAAGCA...CTGGCCTCTGATCTTCTTGATAGGGATAAACTGAGATCTTAAATGTGCAGGTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CAA 90 bp TGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCCCTTTGTCCAAGGTGTaGGATGCCAAATTAAGATGC +
Preference number: 5 (lower is better)
Translates to: CLRSNTPMVLAPEFPSLFPLSKV*DAKLRC
Trigger: GCATCTTAATTTGGCATCCAACACCTTGGACAAAGG...GAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CAA 90 bp TACTCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCTCCCAGCATTTCTCATaGAGGGAGCAGTTGGCCAAA +
Preference number: 5 (lower is better)
Translates to: YSCIYLSNTEVIIANPMPSQHFS*REQLAK
Trigger: TTTGGCCAACTGCTCCCTCAATGAGAAATGCTGGGA...GGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CAA 90 bp ATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGATTTTTCCTGACCAGGTTCTGGTaGTTCCTCAAGACTTCAGCC +
Preference number: 5 (lower is better)
Translates to: IYLSNTEVIIANPMPGFFLTRFW*FLKTSA
Trigger: GGCTGAAGTCTTGAGGAACAACCAGAACCTGGTCAG...GAAAAATCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CAA 90 bp CCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCTGGCATGGATTTTTCTCTaGTTCAGCAACCAGAAATGC +
Preference number: 5 (lower is better)
Translates to: PIHPWFLHQNFHPCSLLLAWIFL*FSNQKC
Trigger: GCATTTCTGGTTGCTGAACAAGAGAAAAATCCATGC...CAGAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CAA 90 bp GGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTGCATGGATTTTTCTCTaGTTCAGCAACCAGAAATGC +
Preference number: 5 (lower is better)
Translates to: GPIHPWFLHQNFHPCSLLAWIFL*FSNQKC
Trigger: GCATTTCTGGTTGCTGAACAAGAGAAAAATCCATGC...AAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS CCA 90 bp ACAGTGAACAGCTGCTCATTTTCTCTCACCAGACTGAAGGCTTCATaGGCTCTGTTCCTATCTTGGAATAATCTGTGGAAACTCATCTTA +
Preference number: 5 (lower is better)
Translates to: TVNSCSFSLTRLKAS*ALFLSWNNLWKLIL
Trigger: TAAGATGAGTTTCCACAGATTATTCCAAGATAGGAACAGAGCCCATGAAGCCTTCAGTCTGGTGAGAGAAAATGAGCAGCTGTTCACTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS-3UTR CAA 90 bp AAAAACGGCAACAGTTTCCATGATCTGAGTGTCCAGTCTAGGGCCTCTGCTAAAATGAGATCCTTCCTGTaGATCTTCTGGAAAAATCTG +
Preference number: 5 (lower is better)
Translates to: KNGNSFHDLSVQSRASAKMRSFL*IFWKNL
Trigger: CAGATTTTTCCAGAAGATCAACAGGAAGGATCTCAT...TTTAGCAGAGGCCCTAGACTGGACACTCAGATCATGGAAACTGTTGCCGTTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000068767.10
CDS-3UTR CAA 90 bp AGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTATGAGATCCTTCCTGTaGATCTTCTGGAAAAATCTG +
Preference number: 5 (lower is better)
Translates to: RSNTPMVLAPEFPSLFSAMRSFL*IFWKNL
Trigger: CAGATTTTTCCAGAAGATCAACAGGAAGGATCTCAT...AGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CAA 90 bp GTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCTGGAGAATGGGCATTTaGGGGAATGAACAAATTGAA +
Preference number: 5 (lower is better)
Translates to: VQYTHGSCTRISILVLCFWRMGI*GNEQIE
Trigger: TTCAATTTGTTCATTCCCCAAAATGCCCATTCTCCA...GAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CAA 90 bp GGTTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTCAGGACATTCTGGGTaGAAAAGGATAGTTTCTTCA +
Preference number: 5 (lower is better)
Translates to: GCLRSNTPMVLAPEFPSLSGHSG*KRIVSS
Trigger: TGAAGAAACTATCCTTTTCAACCCAGAATGTCCTGA...CAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CAA 90 bp AGGTTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTACAGAGGCAAACACCTaGCAGTCATCAGATGAAATA +
Preference number: 5 (lower is better)
Translates to: RLFEVQYTHGSCTRISILTEANT*QSSDEI
Trigger: TATTTCATCTGATGACTGCAAGGTGTTTGCCTCTGT...AAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAACCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CAA 90 bp ACAAAGAATCAAGTCAGATCAGTCTTTTTCAGAATCTCAGTTTGGCCATCATCTGGGTGGCACAAAGACTaGCACAGTGAGGCTATTCCT +
Preference number: 5 (lower is better)
Translates to: TKNQVRSVFFRISVWPSSGWHKD*HSEAIP
Trigger: AGGAATAGCCTCACTGTGCAAGTCTTTGTGCCACCC...AGATGATGGCCAAACTGAGATTCTGAAAAAGACTGATCTGACTTGATTCTTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068767.10
CDS-3UTR CAA 90 bp GGTTGTTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTTACGAATTCCTTCTaGTTTAGCTCTTCCAAGTAC +
Preference number: 5 (lower is better)
Translates to: GCLRSNTPMVLAPEFPSLFTNSF*FSSSKY
Trigger: GTACTTGGAAGAGCTAAACAAGAAGGAATTCGTAAA...CAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAACAACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CAA 90 bp ATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGATTTTTCACACCACCTGTGGCTTaGATTCAGTGCCCTTTGATT +
Preference number: 5 (lower is better)
Translates to: IYLSNTEVIIANPMPGFFTPPVA*IQCPLI
Trigger: AATCAAAGGGCACTGAATCAAAGCCACAGGTGGTGT...GAAAAATCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CAA 90 bp TTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTTGGAGAATGGGCATTTaGGGGAATGAACAAATTGAA +
Preference number: 5 (lower is better)
Translates to: LRSNTPMVLAPEFPSLFSWRMGI*GNEQIE
Trigger: TTCAATTTGTTCATTCCCCAAAATGCCCATTCTCCA...AGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CAA 90 bp TTACCTGCACATTTAAGATCTCAGTTTATCCCTATCAAGAAGATCAGAGGCCAGCTGACGTTTTATTTCTaGGGACAACTGGTGGCCAAA +
Preference number: 5 (lower is better)
Translates to: LPAHLRSQFIPIKKIRGQLTFYF*GQLVAK
Trigger: TTTGGCCACCAGTTGTCCCAAGAAATAAAACGTCAG...CTGGCCTCTGATCTTCTTGATAGGGATAAACTGAGATCTTAAATGTGCAGGTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CAA 90 bp ATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGATTTTTCGCCATCTATCTGTTCTaGAAGCTCTTCGTTGCCACT +
Preference number: 5 (lower is better)
Translates to: IYLSNTEVIIANPMPGFFAIYLF*KLFVAT
Trigger: AGTGGCAACGAAGAGCTTCAAGAACAGATAGATGGC...GAAAAATCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CAA 90 bp TTTGAGGTCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTCAGGACATTCTGGGTaGAAAAGGATAGTTTCTTCA +
Preference number: 5 (lower is better)
Translates to: FEVQYTHGSCTRISILVLSGHSG*KRIVSS
Trigger: TGAAGAAACTATCCTTTTCAACCCAGAATGTCCTGA...GAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGACCTCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CAA 90 bp TACTCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCCCTTTGTCCAAGGTGTaGGATGCCAAATTAAGATGC +
Preference number: 5 (lower is better)
Translates to: YSCIYLSNTEVIIANPMPPLSKV*DAKLRC
Trigger: GCATCTTAATTTGGCATCCAACACCTTGGACAAAGG...GGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGAGTA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CAA 90 bp TTACCTGCACATTTAAGATCTCAGTTTATCCCTATCAAGAAGATCAGAGGCCAGTCTTCAGTAGGTTCATaGCCCACAGAGTCTTACACT +
Preference number: 5 (lower is better)
Translates to: LPAHLRSQFIPIKKIRGQSSVGS*PTESYT
Trigger: AGTGTAAGACTCTGTGGGCAATGAACCTACTGAAGA...CTGGCCTCTGATCTTCTTGATAGGGATAAACTGAGATCTTAAATGTGCAGGTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CAA 90 bp TCCAATACACCCATGGTTCTTGCACCAGAATTTCCATCCTTGTTCTCTGCTTCTTTTACGAATTCCTTCTaGTTTAGCTCTTCCAAGTAC +
Preference number: 5 (lower is better)
Translates to: SNTPMVLAPEFPSLFSASFTNSF*FSSSKY
Trigger: GTACTTGGAAGAGCTAAACAAGAAGGAATTCGTAAA...AGAAGCAGAGAACAAGGATGGAAATTCTGGTGCAAGAACCATGGGTGTATTGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS-3UTR CAA 90 bp TTACCTGCACATTTAAGATCTCAGTTTATCCCTATCAAGAAGATCAGAGGCCAGACAGAGGCAAACACCTaGCAGTCATCAGATGAAATA +
Preference number: 5 (lower is better)
Translates to: LPAHLRSQFIPIKKIRGQTEANT*QSSDEI
Trigger: TATTTCATCTGATGACTGCAAGGTGTTTGCCTCTGT...CTGGCCTCTGATCTTCTTGATAGGGATAAACTGAGATCTTAAATGTGCAGGTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CAA 90 bp TACTCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCAAGAGTTTCTCAGGTTaGGATAGTATCTCCTCTATG +
Preference number: 5 (lower is better)
Translates to: YSCIYLSNTEVIIANPMPKSFSG*DSISSM
Trigger: CATAGAGGAGATACTATCCAAACCTGAGAAACTCTT...GGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGAGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CAA 90 bp TTACCTGCACATTTAAGATCTCAGTTTATCCCTATCAAGAAGATCAGAGGCCAGTGGAGAATGGGCATTTaGGGGAATGAACAAATTGAA +
Preference number: 5 (lower is better)
Translates to: LPAHLRSQFIPIKKIRGQWRMGI*GNEQIE
Trigger: TTCAATTTGTTCATTCCCCAAAATGCCCATTCTCCA...CTGGCCTCTGATCTTCTTGATAGGGATAAACTGAGATCTTAAATGTGCAGGTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CAA 90 bp TACTCCTGTATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCTTTACGAATTCCTTCTaGTTTAGCTCTTCCAAGTAC +
Preference number: 5 (lower is better)
Translates to: YSCIYLSNTEVIIANPMPFTNSF*FSSSKY
Trigger: GTACTTGGAAGAGCTAAACAAGAAGGAATTCGTAAA...GGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAATACAGGAGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS-3UTR CAA 90 bp ATTTACCTTTCCAATACTGAGGTTATAATTGCAAACCCCATGCCCGGATTTTTCTCAGGACATTCTGGGTaGAAAAGGATAGTTTCTTCA +
Preference number: 5 (lower is better)
Translates to: IYLSNTEVIIANPMPGFFSGHSG*KRIVSS
Trigger: TGAAGAAACTATCCTTTTCAACCCAGAATGTCCTGA...GAAAAATCCGGGCATGGGGTTTGCAATTATAACCTCAGTATTGGAAAGGTAAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000146907.3
CDS GCA 72 bp GTCCACATGCCCTCAGCGGCCAGAGAACATAAGCCCTaGAGCTGGTCTTGGCTTTTCTTACTTGGAGAATGG +
Preference number: 6 (lower is better)
Translates to: VHMPSAAREHKP*SWSWLFLLGEW
Trigger: CCATTCTCCAAGTAAGAAAAGCCAAGACCAGCTGCAGGGCTTATGTTCTCTGGCCGCTGAGGGCATGTGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS GCA 72 bp AGTGCTCGAGAATGCAGTCTGGGTGGCACAAAGACTTaGACAGTGAGGCTATTCCTTTGTCCAAGGTGTTGG +
Preference number: 6 (lower is better)
Translates to: SARECSLGGTKT*TVRLFLCPRCW
Trigger: CCAACACCTTGGACAAAGGAATAGCCTCACTGTGCAAGTCTTTGTGCCACCCAGACTGCATTCTCGAGCACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS CCA 72 bp ATGCCCTCAGCGGCCAGAGAACATAAGCCCTGCAGCTaGTCTTGGCTTTTCTTACTTGGAGAATGGGCATTT +
Preference number: 6 (lower is better)
Translates to: MPSAAREHKPCS*SWLFLLGEWAF
Trigger: AAATGCCCATTCTCCAAGTAAGAAAAGCCAAGACCAGCTGCAGGGCTTATGTTCTCTGGCCGCTGAGGGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS TCA 72 bp GAGAATGCAGTCTGGGTGGCACAAAGACTTGCACAGTaGGGCTATTCCTTTGTCCAAGGTGTTGGATGCCAA +
Preference number: 6 (lower is better)
Translates to: ENAVWVAQRLAQ*GYSFVQGVGCQ
Trigger: TTGGCATCCAACACCTTGGACAAAGGAATAGCCTCACTGTGCAAGTCTTTGTGCCACCCAGACTGCATTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS CAA 72 bp CTCCAGCACCACCACTCAGGAACACCACCTGTGGCTTaGATTCAGTGCCCTTTGATTGGAAAAGGTTCTCAA +
Preference number: 6 (lower is better)
Translates to: LQHHHSGTPPVA*IQCPLIGKGSQ
Trigger: TTGAGAACCTTTTCCAATCAAAGGGCACTGAATCAAAGCCACAGGTGGTGTTCCTGAGTGGTGGTGCTGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS CAA 72 bp AAGTGCTCGAGAATGCAGTCTGGGTGGCACAAAGACTaGCACAGTGAGGCTATTCCTTTGTCCAAGGTGTTG +
Preference number: 6 (lower is better)
Translates to: KCSRMQSGWHKD*HSEAIPLSKVL
Trigger: CAACACCTTGGACAAAGGAATAGCCTCACTGTGCAAGTCTTTGTGCCACCCAGACTGCATTCTCGAGCACTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS CAA 90 bp GCCAAAACTAAGTGCTCGAGAATGCAGTCTGGGTGGCACAAAGACTaGCACAGTGAGGCTATTCCTTTGTCCAAGGTGTTGGATGCCAAA +
Preference number: 6 (lower is better)
Translates to: AKTKCSRMQSGWHKD*HSEAIPLSKVLDAK
Trigger: TTTGGCATCCAACACCTTGGACAAAGGAATAGCCTCACTGTGCAAGTCTTTGTGCCACCCAGACTGCATTCTCGAGCACTTAGTTTTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS GCA 72 bp CTCCTGAGCAAACTGCTCAGCAGTACATTCACTGGCTaGTTCTCTGTACAGTTATCACACAGCTCTGATTCC +
Preference number: 6 (lower is better)
Translates to: LLSKLLSSTFTG*FSVQLSHSSDS
Trigger: GGAATCAGAGCTGTGTGATAACTGTACAGAGAAGCAGCCAGTGAATGTACTGCTGAGCAGTTTGCTCAGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS CCA 72 bp ATAAGAGTTTCTCAGGTTTGGATAGTATCTCCTCTATaGGAGCTGAGGGGCCAGGCCATTCTCTGGAGATCA +
Preference number: 6 (lower is better)
Translates to: IRVSQVWIVSPL*ELRGQAILWRS
Trigger: TGATCTCCAGAGAATGGCCTGGCCCCTCAGCTCCCATAGAGGAGATACTATCCAAACCTGAGAAACTCTTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS CCA 72 bp GTTAGCTCACAGGCTTCCAACCCAAGATCCTCTAAGTaGCAGTTGGGATGTTTTATAGCATCACACAGCAGC +
Preference number: 6 (lower is better)
Translates to: VSSQASNPRSSK*QLGCFIASHSS
Trigger: GCTGCTGTGTGATGCTATAAAACATCCCAACTGCCACTTAGAGGATCTTGGGTTGGAAGCCTGTGAGCTAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS CAA 90 bp TCTTGCCAACTCCAGCACCACCACTCAGGAACACCACCTGTGGCTTaGATTCAGTGCCCTTTGATTGGAAAAGGTTCTCAAAACAATCAT +
Preference number: 6 (lower is better)
Translates to: SCQLQHHHSGTPPVA*IQCPLIGKGSQNNH
Trigger: ATGATTGTTTTGAGAACCTTTTCCAATCAAAGGGCACTGAATCAAAGCCACAGGTGGTGTTCCTGAGTGGTGGTGCTGGAGTTGGCAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS CCA 72 bp TGGCTCAAGACATCACACAACAGTTTCACATCACTGTaGGAGAGAATTGTGAGGCTGAGGTTCAAGTGCTGT +
Preference number: 6 (lower is better)
Translates to: WLKTSHNSFTSL*ERIVRLRFKCC
Trigger: ACAGCACTTGAACCTCAGCCTCACAATTCTCTCCCACAGTGATGTGAAACTGTTGTGTGATGTCTTGAGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS CCA 72 bp GCTGCTACCACAAGTTCTTCTATGTTGCACTCTGCCTaGCTCAAGACATCACACAACAGTTTCACATCACTG +
Preference number: 6 (lower is better)
Translates to: AATTSSSMLHSA*LKTSHNSFTSL
Trigger: CAGTGATGTGAAACTGTTGTGTGATGTCTTGAGCCAGGCAGAGTGCAACATAGAAGAACTTGTGGTAGCAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS CCA 72 bp AGGTTCTGGTTGTTCCTCAAGACTTCAGCCAGGTCCTaGCAACCACTAATGGTGATGAGACAATGTCTCAAA +
Preference number: 6 (lower is better)
Translates to: RFWLFLKTSARS*QPLMVMRQCLK
Trigger: TTTGAGACATTGTCTCATCACCATTAGTGGTTGCCAGGACCTGGCTGAAGTCTTGAGGAACAACCAGAACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS CAA 72 bp GGGTGGCACAAAGACTTGCACAGTGAGGCTATTCCTTaGTCCAAGGTGTTGGATGCCAAATTAAGATGCTTC +
Preference number: 6 (lower is better)
Translates to: GWHKDLHSEAIP*SKVLDAKLRCF
Trigger: GAAGCATCTTAATTTGGCATCCAACACCTTGGACAAAGGAATAGCCTCACTGTGCAAGTCTTTGTGCCACCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS GCA 72 bp ACAAGCTGCTACCACAAGTTCTTCTATGTTGCACTCTaGCTGGCTCAAGACATCACACAACAGTTTCACATC +
Preference number: 6 (lower is better)
Translates to: TSCYHKFFYVAL*LAQDITQQFHI
Trigger: GATGTGAAACTGTTGTGTGATGTCTTGAGCCAGGCAGAGTGCAACATAGAAGAACTTGTGGTAGCAGCTTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS CAA 72 bp TCACACAGCAGCTTCACACCAGTGTCTTCTAGTTTATaGTTCGAAACTTGTAGGCTGACCAGGTTCTGGTTG +
Preference number: 6 (lower is better)
Translates to: SHSSFTPVSSSL*FETCRLTRFWL
Trigger: CAACCAGAACCTGGTCAGCCTACAAGTTTCGAACAATAAACTAGAAGACACTGGTGTGAAGCTGCTGTGTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS TCA 72 bp TTCTTCAGTAGGTTCATTGCCCACAGAGTCTTACACTaGGTAAATGTAGATGCAAGGTCCTCACAACAGGCA +
Preference number: 6 (lower is better)
Translates to: FFSRFIAHRVLH*VNVDARSSQQA
Trigger: TGCCTGTTGTGAGGACCTTGCATCTACATTTACTCAGTGTAAGACTCTGTGGGCAATGAACCTACTGAAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS GCA 72 bp CACCACTCAGGAACACCACCTGTGGCTTTGATTCAGTaGCCTTTGATTGGAAAAGGTTCTCAAAACAATCAT +
Preference number: 6 (lower is better)
Translates to: HHSGTPPVALIQ*PLIGKGSQNNH
Trigger: ATGATTGTTTTGAGAACCTTTTCCAATCAAAGGGCACTGAATCAAAGCCACAGGTGGTGTTCCTGAGTGGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS GCA 72 bp CATCGTCCATCTCAAACAGACAGTAAAACAGCTTCATaGCATCTATCTGTTCTTGAAGCTCTTCGTTGCCAC +
Preference number: 6 (lower is better)
Translates to: HRPSQTDSKTAS*HLSVLEALRCH
Trigger: GTGGCAACGAAGAGCTTCAAGAACAGATAGATGGCATGAAGCTGTTTTACTGTCTGTTTGAGATGGACGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS GCA 72 bp ATTCCTTTGTCCAAGGTGTTGGATGCCAAATTAAGATaGTTCAAGGTCTTGTTGCTGATCAGGACAGAGGCA +
Preference number: 6 (lower is better)
Translates to: IPLSKVLDAKLR*FKVLLLIRTEA
Trigger: TGCCTCTGTCCTGATCAGCAACAAGACCTTGAAGCATCTTAATTTGGCATCCAACACCTTGGACAAAGGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS CCA 72 bp AGCTGCTCATTTTCTCTCACCAGACTGAAGGCTTCATaGGCTCTGTTCCTATCTTGGAATAATCTGTGGAAA +
Preference number: 6 (lower is better)
Translates to: SCSFSLTRLKAS*ALFLSWNNLWK
Trigger: TTTCCACAGATTATTCCAAGATAGGAACAGAGCCCATGAAGCCTTCAGTCTGGTGAGAGAAAATGAGCAGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS CAA 72 bp TCTAAGCTGTCGATGATAAATAAGAGTTTCTCAGGTTaGGATAGTATCTCCTCTATGGGAGCTGAGGGGCCA +
Preference number: 6 (lower is better)
Translates to: SKLSMINKSFSG*DSISSMGAEGP
Trigger: TGGCCCCTCAGCTCCCATAGAGGAGATACTATCCAAACCTGAGAAACTCTTATTTATCATCGACAGCTTAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS CAA 72 bp GAAATACTACAAGCTGCTACCACAAGTTCTTCTATGTaGCACTCTGCCTGGCTCAAGACATCACACAACAGT +
Preference number: 6 (lower is better)
Translates to: EILQAATTSSSM*HSAWLKTSHNS
Trigger: ACTGTTGTGTGATGTCTTGAGCCAGGCAGAGTGCAACATAGAAGAACTTGTGGTAGCAGCTTGTAGTATTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS CAA 72 bp GACTTGCACAGTGAGGCTATTCCTTTGTCCAAGGTGTaGGATGCCAAATTAAGATGCTTCAAGGTCTTGTTG +
Preference number: 6 (lower is better)
Translates to: DLHSEAIPLSKV*DAKLRCFKVLL
Trigger: CAACAAGACCTTGAAGCATCTTAATTTGGCATCCAACACCTTGGACAAAGGAATAGCCTCACTGTGCAAGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS CAA 90 bp CATCCATCAATCTCTCTTTTTGCTCTCTCTATGAGATCCTTCCTGTaGATCTTCTGGAAAAATCTGAAGGTCATATCCCAGGCTGGCTTC +
Preference number: 6 (lower is better)
Translates to: HPSISLFALSMRSFL*IFWKNLKVISQAGF
Trigger: GAAGCCAGCCTGGGATATGACCTTCAGATTTTTCCAGAAGATCAACAGGAAGGATCTCATAGAGAGAGCAAAAAGAGAGATTGATGGATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS CAA 90 bp TTTATAGCATCACACAGCAGCTTCACACCAGTGTCTTCTAGTTTATaGTTCGAAACTTGTAGGCTGACCAGGTTCTGGTTGTTCCTCAAG +
Preference number: 6 (lower is better)
Translates to: FIASHSSFTPVSSSL*FETCRLTRFWLFLK
Trigger: CTTGAGGAACAACCAGAACCTGGTCAGCCTACAAGTTTCGAACAATAAACTAGAAGACACTGGTGTGAAGCTGCTGTGTGATGCTATAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS TCA 72 bp GAATGGGCATTTTGGGGAATGAACAAATTGAAGATGTaGGTGGTATACAGGGAGGTAGTACAACGGCAAATG +
Preference number: 6 (lower is better)
Translates to: EWAFWGMNKLKM*VVYREVVQRQM
Trigger: CATTTGCCGTTGTACTACCTCCCTGTATACCACTCACATCTTCAATTTGTTCATTCCCCAAAATGCCCATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS CAA 72 bp CAGACAGTAAAACAGCTTCATGCCATCTATCTGTTCTaGAAGCTCTTCGTTGCCACTTATAGTTTCCAGGCA +
Preference number: 6 (lower is better)
Translates to: QTVKQLHAIYLF*KLFVATYSFQA
Trigger: TGCCTGGAAACTATAAGTGGCAACGAAGAGCTTCAAGAACAGATAGATGGCATGAAGCTGTTTTACTGTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS CAA 90 bp TCTGTCCAAGAAACCTGTTTCAGGCCCAACTGCAAAACCTCCTGTTaGAGGAACTCCTTAAACTTTACGAATTCCTTCTTGTTTAGCTCT +
Preference number: 6 (lower is better)
Translates to: SVQETCFRPNCKTSC*RNSLNFTNSFLFSS
Trigger: AGAGCTAAACAAGAAGGAATTCGTAAAGTTTAAGGAGTTCCTCAAACAGGAGGTTTTGCAGTTGGGCCTGAAACAGGTTTCTTGGACAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS TCA 72 bp TCTCTGTACAGTTATCACACAGCTCTGATTCCCATTTaGACAAATCACATTCCATCCCTTCTAAGCTGTCGA +
Preference number: 6 (lower is better)
Translates to: SLYSYHTALIPI*TNHIPSLLSCR
Trigger: TCGACAGCTTAGAAGGGATGGAATGTGATTTGTTCAAATGGGAATCAGAGCTGTGTGATAACTGTACAGAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS TCA 72 bp GTGAGGCTGAGGTTCAAGTGCTGTAAATTGCAGTTCTaGATCAACTCAAAGAACAGGTACTTTTCACATACG +
Preference number: 6 (lower is better)
Translates to: VRLRFKCCKLQF*INSKNRYFSHT
Trigger: CGTATGTGAAAAGTACCTGTTCTTTGAGTTGATTCAGAACTGCAATTTACAGCACTTGAACCTCAGCCTCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS CAA 72 bp TCAGGAACACCACCTGTGGCTTTGATTCAGTGCCCTTaGATTGGAAAAGGTTCTCAAAACAATCATAGTCAT +
Preference number: 6 (lower is better)
Translates to: SGTPPVALIQCP*IGKGSQNNHSH
Trigger: ATGACTATGATTGTTTTGAGAACCTTTTCCAATCAAAGGGCACTGAATCAAAGCCACAGGTGGTGTTCCTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS CAA 72 bp TTCTCTGTACAGTTATCACACAGCTCTGATTCCCATTaGAACAAATCACATTCCATCCCTTCTAAGCTGTCG +
Preference number: 6 (lower is better)
Translates to: FSVQLSHSSDSH*NKSHSIPSKLS
Trigger: CGACAGCTTAGAAGGGATGGAATGTGATTTGTTCAAATGGGAATCAGAGCTGTGTGATAACTGTACAGAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS CAA 72 bp CAGAAATGCCTGGGTTTCAGTATCAAAGTCAGTAATTaGCAATCCAAGTACGTATGTGGCACATGTTTGCTG +
Preference number: 6 (lower is better)
Translates to: QKCLGFSIKVSN*QSKYVCGTCLL
Trigger: CAGCAAACATGTGCCACATACGTACTTGGATTGCAAATTACTGACTTTGATACTGAAACCCAGGCATTTCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS CAA 90 bp ACTGGCTGCTTCTCTGTACAGTTATCACACAGCTCTGATTCCCATTaGAACAAATCACATTCCATCCCTTCTAAGCTGTCGATGATAAAT +
Preference number: 6 (lower is better)
Translates to: TGCFSVQLSHSSDSH*NKSHSIPSKLSMIN
Trigger: ATTTATCATCGACAGCTTAGAAGGGATGGAATGTGATTTGTTCAAATGGGAATCAGAGCTGTGTGATAACTGTACAGAGAAGCAGCCAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS CAA 90 bp CATCTCAAACAGACAGTAAAACAGCTTCATGCCATCTATCTGTTCTaGAAGCTCTTCGTTGCCACTTATAGTTTCCAGGCACTGATACAA +
Preference number: 6 (lower is better)
Translates to: HLKQTVKQLHAIYLF*KLFVATYSFQALIQ
Trigger: TTGTATCAGTGCCTGGAAACTATAAGTGGCAACGAAGAGCTTCAAGAACAGATAGATGGCATGAAGCTGTTTTACTGTCTGTTTGAGATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS CAA 90 bp TTCAGCAACCAGAAATGCCTGGGTTTCAGTATCAAAGTCAGTAATTaGCAATCCAAGTACGTATGTGGCACATGTTTGCTGTTTCAAAGC +
Preference number: 6 (lower is better)
Translates to: FSNQKCLGFSIKVSN*QSKYVCGTCLLFQS
Trigger: GCTTTGAAACAGCAAACATGTGCCACATACGTACTTGGATTGCAAATTACTGACTTTGATACTGAAACCCAGGCATTTCTGGTTGCTGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
CDS CAA 72 bp ATCTCTCTTTTTGCTCTCTCTATGAGATCCTTCCTGTaGATCTTCTGGAAAAATCTGAAGGTCATATCCCAG +
Preference number: 6 (lower is better)
Translates to: ISLFALSMRSFL*IFWKNLKVISQ
Trigger: CTGGGATATGACCTTCAGATTTTTCCAGAAGATCAACAGGAAGGATCTCATAGAGAGAGCAAAAAGAGAGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS GCA 72 bp GAACAGGTACTTTTCACATACGAAGAACACATTATTTaGCACAAGAACGTTAAGGGTGTAGTTGTGGTACTT +
Preference number: 6 (lower is better)
Translates to: EQVLFTYEEHII*HKNVKGVVVVL
Trigger: AAGTACCACAACTACACCCTTAACGTTCTTGTGGCAAATAATGTGTTCTTCGTATGTGAAAAGTACCTGTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8
ENSMUST00000146907.3
CDS GCA 72 bp CAAGCATGGATTTTTCTCTTGTTCAGCAACCAGAAATaGCTGGGTTTCAGTATCAAAGTCAGTAATTTGCAA +
Preference number: 6 (lower is better)
Translates to: QAWIFLLFSNQK*LGFSIKVSNLQ
Trigger: TTGCAAATTACTGACTTTGATACTGAAACCCAGGCATTTCTGGTTGCTGAACAAGAGAAAAATCCATGCTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068767.10
ENSMUST00000119386.8