RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NLRP14 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000016626

Ensembl transcript IDs: ENSMUST00000084763.5, ENSMUST00000142623.3

Found 139 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCAACAAACATTTTACAGAGACGTGAGCAACCTACCCCTACTGAGTaGAGTTCAGTGCTTCTGGACATAAACAGTATTTCTTACAAGTTA +
Preference number: 1 (lower is better)
Translates to: PTNILQRREQPTPTE*SSVLLDINSISYKL
Trigger: TAACTTGTAAGAAATACTGTTTATGTCCAGAAGCACTGAACTGCACTCAGTAGGGGTAGGTTGCTCACGTCTCTGTAAAATGTTTGTTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
3UTR GCA 72 bp ATTTTACAGAGACGTGAGCAACCTACCCCTACTGAGTaGAGTTCAGTGCTTCTGGACATAAACAGTATTTCT +
Preference number: 3 (lower is better)
Translates to: ILQRREQPTPTE*SSVLLDINSIS
Trigger: AGAAATACTGTTTATGTCCAGAAGCACTGAACTGCACTCAGTAGGGGTAGGTTGCTCACGTCTCTGTAAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
3UTR TCA 72 bp TTTTATGTGCTTTGCTTTACTTTCTCAACCTCCACGTaGAACCCAACAAACATTTTACAGAGACGTGAGCAA +
Preference number: 3 (lower is better)
Translates to: FYVLCFTFSTST*NPTNILQRREQ
Trigger: TTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGGTTGAGAAAGTAAAGCAAAGCACATAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142623.3
CDS-3UTR GCA 90 bp CCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACCTACCCCTAGAGCCGTGCTGGTTTTaGAGGTCTCTTCAACACGGC +
Preference number: 4 (lower is better)
Translates to: PPRETQQTFYRDVSNLPLEPCWF*RSLQHG
Trigger: GCCGTGTTGAAGAGACCTGCAAAACCAGCACGGCTC...TAGGGGTAGGTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR GCA 90 bp CAACCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACCTACCCACCAAGCTCCTGTTGTaGAGGAGAGCGGTGGAGAGA +
Preference number: 4 (lower is better)
Translates to: QPPRETQQTFYRDVSNLPTKLLL*RRAVER
Trigger: TCTCTCCACCGCTCTCCTGCACAACAGGAGCTTGGT...GGGTAGGTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR TCA 90 bp CAACCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACCTACCCATTCCAGCAGCTCCTTaGAGGACTACCGTTTGTGGA +
Preference number: 4 (lower is better)
Translates to: QPPRETQQTFYRDVSNLPIPAAP*RTTVCG
Trigger: TCCACAAACGGTAGTCCTTCAAGGAGCTGCTGGAAT...GGGTAGGTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR GCA 90 bp CTTTCTCAACCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACCTTCAACAGCAGCCTTaGACAGGCTCCTCAACAGGG +
Preference number: 4 (lower is better)
Translates to: LSQPPRETQQTFYRDVSNLQQQP*TGSSTG
Trigger: CCCTGTTGAGGAGCCTGTGCAAGGCTGCTGTTGAAG...GTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGGTTGAGAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR GCA 90 bp CAACCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACCTACCCCTAAGCACAAGGCTCTaGAGAGTACACTGTGGATGC +
Preference number: 4 (lower is better)
Translates to: QPPRETQQTFYRDVSNLPLSTRL*RVHCGC
Trigger: GCATCCACAGTGTACTCTGCAGAGCCTTGTGCTTAG...GGGTAGGTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR GCA 90 bp CTTTCTCAACCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACACCAAGCTCCTGTTGTaGAGGAGAGCGGTGGAGAGA +
Preference number: 4 (lower is better)
Translates to: LSQPPRETQQTFYRDVSNTKLLL*RRAVER
Trigger: TCTCTCCACCGCTCTCCTGCACAACAGGAGCTTGGT...GTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGGTTGAGAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR CCA 90 bp CTTTCTCAACCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACACAGCACAGATCATCTaGCACATGTGGCACACGTGG +
Preference number: 4 (lower is better)
Translates to: LSQPPRETQQTFYRDVSNTAQII*HMWHTW
Trigger: CCACGTGTGCCACATGTGCCAGATGATCTGTGCTGT...GTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGGTTGAGAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR CCA 90 bp CCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACCTACCCCTAGGATGCTTCAAGGTATaGCTGAGCAGCTTTATCCCT +
Preference number: 4 (lower is better)
Translates to: PPRETQQTFYRDVSNLPLGCFKV*LSSFIP
Trigger: AGGGATAAAGCTGCTCAGCCATACCTTGAAGCATCC...TAGGGGTAGGTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR CCA 90 bp CCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACCTACCCCTACTGCAGAGTACACTGTaGATGCTTCAAGGTATGGCT +
Preference number: 4 (lower is better)
Translates to: PPRETQQTFYRDVSNLPLLQSTL*MLQGMA
Trigger: AGCCATACCTTGAAGCATCCACAGTGTACTCTGCAG...TAGGGGTAGGTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR TCA 90 bp CCTACCCCTACTGAGTGCAGTTCAGTGCTTCTGGACATAAACAGTATTTCTTACGCCTCTTGCTTTTGGTaGGAGCCGAGGAAAGAACTT +
Preference number: 4 (lower is better)
Translates to: PTPTECSSVLLDINSISYASCFW*EPRKEL
Trigger: AAGTTCTTTCCTCGGCTCTCACCAAAAGCAAGAGGC...GTAAGAAATACTGTTTATGTCCAGAAGCACTGAACTGCACTCAGTAGGGGTAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR GCA 90 bp CTTTCTCAACCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACCTAAGCACAAGGCTCTaGAGAGTACACTGTGGATGC +
Preference number: 4 (lower is better)
Translates to: LSQPPRETQQTFYRDVSNLSTRL*RVHCGC
Trigger: GCATCCACAGTGTACTCTGCAGAGCCTTGTGCTTAG...GTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGGTTGAGAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR CCA 90 bp CAACCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACCTACCCGTCGCTTCCAAGCTGTaGATCTTGTCGCTACTAATA +
Preference number: 4 (lower is better)
Translates to: QPPRETQQTFYRDVSNLPVASKL*ILSLLI
Trigger: TATTAGTAGCGACAAGATCCACAGCTTGGAAGCGAC...GGGTAGGTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR TCA 90 bp CCTACCCCTACTGAGTGCAGTTCAGTGCTTCTGGACATAAACAGTATTTCTTACTCTCCACTTGTCCCTTaGGAACAGCACAGATCATCT +
Preference number: 4 (lower is better)
Translates to: PTPTECSSVLLDINSISYSPLVP*EQHRSS
Trigger: AGATGATCTGTGCTGTTCTCAAGGGACAAGTGGAGA...GTAAGAAATACTGTTTATGTCCAGAAGCACTGAACTGCACTCAGTAGGGGTAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR TCA 90 bp CCTACCCCTACTGAGTGCAGTTCAGTGCTTCTGGACATAAACAGTATTTCTTACTACTCAGTGTCTTGCTaGAGAACCTTTGCATCCAGG +
Preference number: 4 (lower is better)
Translates to: PTPTECSSVLLDINSISYYSVSC*RTFASR
Trigger: CCTGGATGCAAAGGTTCTTCAGCAAGACACTGAGTA...GTAAGAAATACTGTTTATGTCCAGAAGCACTGAACTGCACTCAGTAGGGGTAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR GCA 90 bp CAACCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACCTACCCACTGCTGATAGAGATTaGCATCTGCCCATTCTAAGA +
Preference number: 4 (lower is better)
Translates to: QPPRETQQTFYRDVSNLPTADRD*HLPILR
Trigger: TCTTAGAATGGGCAGATGGCAATCTCTATCAGCAGT...GGGTAGGTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR GCA 90 bp CAACCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACCTACCCCCAGTCTTTACACAGTaGAAACTGTGGCTCTTCAAA +
Preference number: 4 (lower is better)
Translates to: QPPRETQQTFYRDVSNLPPVFTQ*KLWLFK
Trigger: TTTGAAGAGCCACAGTTTGCACTGTGTAAAGACTGG...GGGTAGGTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGGTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR GCA 90 bp GTGCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTTGGACCAGCTCCTGAAGATTaGAGTGTGGCTGCTGGAGGG +
Preference number: 4 (lower is better)
Translates to: VLLDINSISYKLKTLPLGPAPED*SVAAGG
Trigger: CCCTCCAGCAGCCACACTGCAATCTTCAGGAGCTGG...TCCAAGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR GCA 90 bp AGTGCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTTGGCCAGCTCCTGAAGATTaGAGTGTGGCTGCTGGAGGG +
Preference number: 4 (lower is better)
Translates to: SASGHKQYFLQVKDFATWPAPED*SVAAGG
Trigger: CCCTCCAGCAGCCACACTGCAATCTTCAGGAGCTGG...CCAAGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGCACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR CCA 90 bp CCTACCCCTACTGAGTGCAGTTCAGTGCTTCTGGACATAAACAGTATTTCTTACAATGAGAAAAGACACTaGGGAGATCTGGGTCCAGTC +
Preference number: 4 (lower is better)
Translates to: PTPTECSSVLLDINSISYNEKRH*GDLGPV
Trigger: GACTGGACCCAGATCTCCCCAGTGTCTTTTCTCATT...GTAAGAAATACTGTTTATGTCCAGAAGCACTGAACTGCACTCAGTAGGGGTAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR CCA 90 bp CCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACCTACCCCTAATACCAGGCTCCTATTaGTTTGGAGAGCATTGGATA +
Preference number: 4 (lower is better)
Translates to: PPRETQQTFYRDVSNLPLIPGSY*FGEHWI
Trigger: TATCCAATGCTCTCCAAACCAATAGGAGCCTGGTAT...TAGGGGTAGGTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR CCA 90 bp CCTACCCCTACTGAGTGCAGTTCAGTGCTTCTGGACATAAACAGTATTTCTTACCTGCAGAGTACACTGTaGATGCTTCAAGGTATGGCT +
Preference number: 4 (lower is better)
Translates to: PTPTECSSVLLDINSISYLQSTL*MLQGMA
Trigger: AGCCATACCTTGAAGCATCCACAGTGTACTCTGCAG...GTAAGAAATACTGTTTATGTCCAGAAGCACTGAACTGCACTCAGTAGGGGTAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR TCA 90 bp CCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACCTACCCCTAAAGAAAGTAAAATCCTaGCAGCCATTCAGGAAATCG +
Preference number: 4 (lower is better)
Translates to: PPRETQQTFYRDVSNLPLKKVKS*QPFRKS
Trigger: CGATTTCCTGAATGGCTGTCAGGATTTTACTTTCTT...TAGGGGTAGGTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR TCA 90 bp TTCAGTGCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTGGCTGCTGGAGGGAGTaGCACAGAAGCTTCACTCCA +
Preference number: 4 (lower is better)
Translates to: FSASGHKQYFLQVKDFATGCWRE*HRSFTP
Trigger: TGGAGTGAAGCTTCTGTGTCACTCCCTCCAGCAGCC...AGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGCACTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR GCA 90 bp CCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACCTACCCCTACATATTTTTCAAGTCTaGCCTTGCTGTCAGTCTCAT +
Preference number: 4 (lower is better)
Translates to: PPRETQQTFYRDVSNLPLHIFQV*PCCQSH
Trigger: ATGAGACTGACAGCAAGGGCAGACTTGAAAAATATG...TAGGGGTAGGTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR CCA 90 bp CTTTCTCAACCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACCACACGTGGCACATGTaGAAAAGCCTCCAATTCATT +
Preference number: 4 (lower is better)
Translates to: LSQPPRETQQTFYRDVSNHTWHM*KSLQFI
Trigger: AATGAATTGGAGGCTTTTCCACATGTGCCACGTGTG...GTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGGTTGAGAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR CCA 90 bp CAACCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACCTACCCGCAAAATGTCCTCTCTaGTTAATTCATGCTTTCGGA +
Preference number: 4 (lower is better)
Translates to: QPPRETQQTFYRDVSNLPAKCPL*LIHAFG
Trigger: TCCGAAAGCATGAATTAACCAGAGAGGACATTTTGC...GGGTAGGTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGGTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR TCA 90 bp GTGCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTTGGAATCAACTCCAGCTCCTaGAGATTGCAGTGTGGCTGC +
Preference number: 4 (lower is better)
Translates to: VLLDINSISYKLKTLPLGINSSS*RLQCGC
Trigger: GCAGCCACACTGCAATCTTCAGGAGCTGGAGTTGAT...TCCAAGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR TCA 90 bp GCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTTGGAAGATCAACTCCAGCTCCTaGAGATTGCAGTGTGGCTGC +
Preference number: 4 (lower is better)
Translates to: ASGHKQYFLQVKDFATWKINSSS*RLQCGC
Trigger: GCAGCCACACTGCAATCTTCAGGAGCTGGAGTTGAT...CTTCCAAGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR GCA 90 bp CCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACCTACCCCTATCCTCATCAAATATATaGTGCAGCAGATTTTGGTCT +
Preference number: 4 (lower is better)
Translates to: PPRETQQTFYRDVSNLPLSSSNI*CSRFWS
Trigger: AGACCAAAATCTGCTGCAGCATATATTTGATGAGGA...TAGGGGTAGGTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR CCA 90 bp CAACCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACCTACCCCTTTTCTCCTTTACTTaGCTAATCTCTTTCCCATTG +
Preference number: 4 (lower is better)
Translates to: QPPRETQQTFYRDVSNLPLFSFT*LISFPL
Trigger: CAATGGGAAAGAGATTAGCCAAGTAAAGGAGAAAAG...GGGTAGGTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR CCA 90 bp GCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTTGGAAGCTGAAGATTGCAGTGTaGCTGCTGGAGGGAGTGACA +
Preference number: 4 (lower is better)
Translates to: ASGHKQYFLQVKDFATWKLKIAV*LLEGVT
Trigger: TGTCACTCCCTCCAGCAGCCACACTGCAATCTTCAG...CTTCCAAGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR CCA 90 bp TTTATGTGCTTTGCTTTACTTTCTCAACCTCCACGTGAAACCCAACAAACATTTCTGAAGATTGCAGTGTaGCTGCTGGAGGGAGTGACA +
Preference number: 4 (lower is better)
Translates to: FMCFALLSQPPRETQQTFLKIAV*LLEGVT
Trigger: TGTCACTCCCTCCAGCAGCCACACTGCAATCTTCAG...AAATGTTTGTTGGGTTTCACGTGGAGGTTGAGAAAGTAAAGCAAAGCACATAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142623.3
CDS-3UTR CCA 90 bp CCTACCCCTACTGAGTGCAGTTCAGTGCTTCTGGACATAAACAGTATTTCTTACTCTGAACGTGGCAGTTaGGATTTCTTAAAGCATCAC +
Preference number: 4 (lower is better)
Translates to: PTPTECSSVLLDINSISYSERGS*DFLKHH
Trigger: GTGATGCTTTAAGAAATCCCAACTGCCACGTTCAGA...GTAAGAAATACTGTTTATGTCCAGAAGCACTGAACTGCACTCAGTAGGGGTAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR CCA 90 bp CTTTCTCAACCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACTCTGAACGTGGCAGTTaGGATTTCTTAAAGCATCAC +
Preference number: 4 (lower is better)
Translates to: LSQPPRETQQTFYRDVSNSERGS*DFLKHH
Trigger: GTGATGCTTTAAGAAATCCCAACTGCCACGTTCAGA...GTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGGTTGAGAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR TCA 90 bp AGTGCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTTGGGCCTCTTGCTTTTGGTaGGAGCCGAGGAAAGAACTT +
Preference number: 4 (lower is better)
Translates to: SASGHKQYFLQVKDFATWASCFW*EPRKEL
Trigger: AAGTTCTTTCCTCGGCTCTCACCAAAAGCAAGAGGC...CCAAGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGCACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR GCA 90 bp CCTACCCCTACTGAGTGCAGTTCAGTGCTTCTGGACATAAACAGTATTTCTTACGTTGCAAATTCTCCATaGAAAGAGGTCTTATACCAC +
Preference number: 4 (lower is better)
Translates to: PTPTECSSVLLDINSISYVANSP*KEVLYH
Trigger: GTGGTATAAGACCTCTTTGCATGGAGAATTTGCAAC...GTAAGAAATACTGTTTATGTCCAGAAGCACTGAACTGCACTCAGTAGGGGTAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR GCA 90 bp GTGCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTTGGAGCTTCATTGTCCAGATaGCTTCAACAGCAGCCTTGC +
Preference number: 4 (lower is better)
Translates to: VLLDINSISYKLKTLPLGASLSR*LQQQPC
Trigger: GCAAGGCTGCTGTTGAAGGCATCTGGACAATGAAGC...TCCAAGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR GCA 90 bp CAACCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACCTACCCCTAGAAATTCCATTTTaGATGTTGGAGATCTCAAGA +
Preference number: 4 (lower is better)
Translates to: QPPRETQQTFYRDVSNLPLEIPF*MLEISR
Trigger: TCTTGAGATCTCCAACATGCAAAATGGAATTTCTAG...GGGTAGGTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR TCA 90 bp CCTACCCCTACTGAGTGCAGTTCAGTGCTTCTGGACATAAACAGTATTTCTTACAGGTCTTTAGTCCATTaGCTCCTAAATCAGTTTCTT +
Preference number: 4 (lower is better)
Translates to: PTPTECSSVLLDINSISYRSLVH*LLNQFL
Trigger: AAGAAACTGATTTAGGAGTCAATGGACTAAAGACCT...GTAAGAAATACTGTTTATGTCCAGAAGCACTGAACTGCACTCAGTAGGGGTAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR TCA 90 bp GTGCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTTGGAATACCTAAGAGATCCTaGCAGCAACCAGGGGTCAAA +
Preference number: 4 (lower is better)
Translates to: VLLDINSISYKLKTLPLGIPKRS*QQPGVK
Trigger: TTTGACCCCTGGTTGCTGTCAGGATCTCTTAGGTAT...TCCAAGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR GCA 90 bp TTCAGTGCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTCACAGCCCACAGGTATaGGTGGAAATAAGCTGCAGA +
Preference number: 4 (lower is better)
Translates to: FSASGHKQYFLQVKDFATHSPQV*VEISCR
Trigger: TCTGCAGCTTATTTCCACGCATACCTGTGGGCTGTG...AGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGCACTGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR CCA 90 bp GTGCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTTGGAGGATGCTTCAAGGTATaGCTGAGCAGCTTTATCCCT +
Preference number: 4 (lower is better)
Translates to: VLLDINSISYKLKTLPLGGCFKV*LSSFIP
Trigger: AGGGATAAAGCTGCTCAGCCATACCTTGAAGCATCC...TCCAAGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGCAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR TCA 90 bp GTGCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTTGGACAGTGGAGCAAGTCTTaGAATCTCAGCTGTGATAGA +
Preference number: 4 (lower is better)
Translates to: VLLDINSISYKLKTLPLGQWSKS*NLSCDR
Trigger: TCTATCACAGCTGAGATTTCAAGACTTGCTCCACTG...TCCAAGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGCAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR TCA 90 bp TTCAGTGCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTATACCTAAGAGATCCTaGCAGCAACCAGGGGTCAAA +
Preference number: 4 (lower is better)
Translates to: FSASGHKQYFLQVKDFATIPKRS*QQPGVK
Trigger: TTTGACCCCTGGTTGCTGTCAGGATCTCTTAGGTAT...AGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGCACTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR CCA 90 bp CTTTCTCAACCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACTTCCATTTTGCATGTTaGAGATCTCAAGACTTTACA +
Preference number: 4 (lower is better)
Translates to: LSQPPRETQQTFYRDVSNFHFAC*RSQDFT
Trigger: TGTAAAGTCTTGAGATCTCCAACATGCAAAATGGAA...GTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGGTTGAGAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR CCA 90 bp CCTACCCCTACTGAGTGCAGTTCAGTGCTTCTGGACATAAACAGTATTTCTTACTTCCATTTTGCATGTTaGAGATCTCAAGACTTTACA +
Preference number: 4 (lower is better)
Translates to: PTPTECSSVLLDINSISYFHFAC*RSQDFT
Trigger: TGTAAAGTCTTGAGATCTCCAACATGCAAAATGGAA...GTAAGAAATACTGTTTATGTCCAGAAGCACTGAACTGCACTCAGTAGGGGTAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR CCA 90 bp GTGCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTTGGATGTATTAGGACACTCTaGCCCAATGACCAAATGTGG +
Preference number: 4 (lower is better)
Translates to: VLLDINSISYKLKTLPLGCIRTL*PNDQMW
Trigger: CCACATTTGGTCATTGGGCCAGAGTGTCCTAATACA...TCCAAGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGCAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR TCA 90 bp GCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTTGGAAGGAACATGGAGGTGAGTaGACATGTAGCAGTTTTCAT +
Preference number: 4 (lower is better)
Translates to: ASGHKQYFLQVKDFATWKEHGGE*TCSSFH
Trigger: ATGAAAACTGCTACATGTTCACTCACCTCCATGTTC...CTTCCAAGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR CCA 90 bp GTGCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTTGGAACACAGTGCAAACTGTaGCTCTTCAAAGGAGAAATC +
Preference number: 4 (lower is better)
Translates to: VLLDINSISYKLKTLPLGTQCKL*LFKGEI
Trigger: GATTTCTCCTTTGAAGAGCCACAGTTTGCACTGTGT...TCCAAGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGCAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR CCA 90 bp TTTATGTGCTTTGCTTTACTTTCTCAACCTCCACGTGAAACCCAACAAACATTTTGGTTTGGAGAGCATTaGATAACTTTTGACAACGGG +
Preference number: 4 (lower is better)
Translates to: FMCFALLSQPPRETQQTFWFGEH*ITFDNG
Trigger: CCCGTTGTCAAAAGTTATCCAATGCTCTCCAAACCA...AAATGTTTGTTGGGTTTCACGTGGAGGTTGAGAAAGTAAAGCAAAGCACATAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142623.3
CDS-3UTR CCA 90 bp TTCAGTGCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTTGTATTAGGACACTCTaGCCCAATGACCAAATGTGG +
Preference number: 4 (lower is better)
Translates to: FSASGHKQYFLQVKDFATCIRTL*PNDQMW
Trigger: CCACATTTGGTCATTGGGCCAGAGTGTCCTAATACA...AGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGCACTGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR GCA 90 bp GCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTTGGAAGGGTCATGAATGTGGTTaGTTTCAAGCAACAGATACA +
Preference number: 4 (lower is better)
Translates to: ASGHKQYFLQVKDFATWKGHECG*FQATDT
Trigger: TGTATCTGTTGCTTGAAAGCAACCACATTCATGACC...CTTCCAAGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR CCA 90 bp TTCAGTGCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTTGGTTTGGAGAGCATTaGATAACTTTTGACAACGGG +
Preference number: 4 (lower is better)
Translates to: FSASGHKQYFLQVKDFATWFGEH*ITFDNG
Trigger: CCCGTTGTCAAAAGTTATCCAATGCTCTCCAAACCA...AGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGCACTGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR CCA 90 bp TTCAGTGCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTATACCAGGCTCCTATTaGTTTGGAGAGCATTGGATA +
Preference number: 4 (lower is better)
Translates to: FSASGHKQYFLQVKDFATIPGSY*FGEHWI
Trigger: TATCCAATGCTCTCCAAACCAATAGGAGCCTGGTAT...AGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGCACTGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR TCA 90 bp TTCAGTGCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTAGGGACTCATTTGTATaGAGCACAGAAAACAGATCT +
Preference number: 4 (lower is better)
Translates to: FSASGHKQYFLQVKDFATRDSFV*STENRS
Trigger: AGATCTGTTTTCTGTGCTTCATACAAATGAGTCCCT...AGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGCACTGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR CCA 90 bp GCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTTGGAAGTGCTGCAGCAGATTTTaGTCTTTAGGTGTAATTACA +
Preference number: 4 (lower is better)
Translates to: ASGHKQYFLQVKDFATWKCCSRF*SLGVIT
Trigger: TGTAATTACACCTAAAGACCAAAATCTGCTGCAGCA...CTTCCAAGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR GCA 90 bp AGTGCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTTGGTTTAGAGTGTGGCAGTaGTTAAGACAGAATGAATAT +
Preference number: 4 (lower is better)
Translates to: SASGHKQYFLQVKDFATWFRVWQ*LRQNEY
Trigger: ATATTCATTCTGTCTTAAGCACTGCCACACTCTAAA...CCAAGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGCACT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR GCA 90 bp AGTGCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTTGGCTAGAAATTCCATTTTaGATGTTGGAGATCTCAAGA +
Preference number: 4 (lower is better)
Translates to: SASGHKQYFLQVKDFATWLEIPF*MLEISR
Trigger: TCTTGAGATCTCCAACATGCAAAATGGAATTTCTAG...CCAAGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGCACT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS GCA 90 bp GCCAGCTTGTTTTGTCCCAGGTCCAGATGTACCAAGCTCCTGTTGTaGAGGAGAGCGGTGGAGAGATGCTCACTGCCAATCGGAGTGAAA +
Preference number: 5 (lower is better)
Translates to: ASLFCPRSRCTKLLL*RRAVERCSLPIGVK
Trigger: TTTCACTCCGATTGGCAGTGAGCATCTCTCCACCGCTCTCCTGCACAACAGGAGCTTGGTACATCTGGACCTGGGACAAAACAAGCTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS GCA 90 bp TCCAGATGTACCAAGCTCCTGTTGTGCAGGAGAGCGGTGGAGAGATaGTCACTGCCAATCGGAGTGAAACTGCAAGACCTAAGCACAAGG +
Preference number: 5 (lower is better)
Translates to: SRCTKLLLCRRAVER*SLPIGVKLQDLSTR
Trigger: CCTTGTGCTTAGGTCTTGCAGTTTCACTCCGATTGGCAGTGAGCATCTCTCCACCGCTCTCCTGCACAACAGGAGCTTGGTACATCTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS CCA 90 bp CGTGAGAACACAGCTCATCAACTCCAGCTCCTGAAGATTGCAGTGTaGCTGCTGGAGGGAGTGACACAGAAGCTTCACTCCATTATCCGC +
Preference number: 5 (lower is better)
Translates to: RENTAHQLQLLKIAV*LLEGVTQKLHSIIR
Trigger: GCGGATAATGGAGTGAAGCTTCTGTGTCACTCCCTCCAGCAGCCACACTGCAATCTTCAGGAGCTGGAGTTGATGAGCTGTGTTCTCACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS GCA 90 bp TCACTGCCAATCGGAGTGAAACTGCAAGACCTAAGCACAAGGCTCTaGAGAGTACACTGTGGATGCTTCAAGGTATGGCTGAGCAGCTTT +
Preference number: 5 (lower is better)
Translates to: SLPIGVKLQDLSTRL*RVHCGCFKVWLSSF
Trigger: AAAGCTGCTCAGCCATACCTTGAAGCATCCACAGTGTACTCTGCAGAGCCTTGTGCTTAGGTCTTGCAGTTTCACTCCGATTGGCAGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR CAA 90 bp CTTTCTCAACCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACCCTTCAACAGCAGCCTaGCACAGGCTCCTCAACAGG +
Preference number: 5 (lower is better)
Translates to: LSQPPRETQQTFYRDVSNPSTAA*HRLLNR
Trigger: CCTGTTGAGGAGCCTGTGCAAGGCTGCTGTTGAAGG...GTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGGTTGAGAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS TCA 90 bp GCACAAGGCTCTGCAGAGTACACTGTGGATGCTTCAAGGTATGGCTaGGCAGCTTTATCCCTTCATCTTCTAAGACGTTGTCTGACAAGC +
Preference number: 5 (lower is better)
Translates to: AQGSAEYTVDASRYG*AALSLHLLRRCLTS
Trigger: GCTTGTCAGACAACGTCTTAGAAGATGAAGGGATAAAGCTGCTCAGCCATACCTTGAAGCATCCACAGTGTACTCTGCAGAGCCTTGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS TCA 90 bp AGTTGTTCACAAGAACAGAAGCCAGATCCCCACAAGCCTTACTCGTaGGAACACAGCTCATCAACTCCAGCTCCTGAAGATTGCAGTGTG +
Preference number: 5 (lower is better)
Translates to: SCSQEQKPDPHKPYS*EHSSSTPAPEDCSV
Trigger: CACACTGCAATCTTCAGGAGCTGGAGTTGATGAGCTGTGTTCTCACGAGTAAGGCTTGTGGGGATCTGGCTTCTGTTCTTGTGAACAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS TCA 90 bp TGTTCAATGGGGCCCTCGCTGCTAGGCCAGTGCTTTGATATTAACTaGGCAAAGCTTTTCTCCTTTACTTGGCTAATCTCTTTCCCATTG +
Preference number: 5 (lower is better)
Translates to: CSMGPSLLGQCFDIN*AKLFSFTWLISFPL
Trigger: CAATGGGAAAGAGATTAGCCAAGTAAAGGAGAAAAGCTTTGCTCAGTTAATATCAAAGCACTGGCCTAGCAGCGAGGGCCCCATTGAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS CCA 90 bp ACTTTCCTCAGCAAACTACTAATGAGAAAAGACACTGGGGAGATCTaGGTCCAGTCTTTACACAGTGCAAACTGTGGCTCTTCAAAGGAG +
Preference number: 5 (lower is better)
Translates to: TFLSKLLMRKDTGEI*VQSLHSANCGSSKE
Trigger: CTCCTTTGAAGAGCCACAGTTTGCACTGTGTAAAGACTGGACCCAGATCTCCCCAGTGTCTTTTCTCATTAGTAGTTTGCTGAGGAAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR CAA 90 bp CCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACCTACCCCTATTCATACTCAGTGTCTaGCTGAAGAACCTTTGCATC +
Preference number: 5 (lower is better)
Translates to: PPRETQQTFYRDVSNLPLFILSV*LKNLCI
Trigger: GATGCAAAGGTTCTTCAGCAAGACACTGAGTATGAA...TAGGGGTAGGTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS TCA 90 bp ACTCATTTGTATGAAGCACAGAAAACAGATCTTGCCAGTAGTGAATaGCTTGAACAGCAGCACCCTCAAGGCACATTTCAGCTGTGTCCA +
Preference number: 5 (lower is better)
Translates to: THLYEAQKTDLASSE*LEQQHPQGTFQLCP
Trigger: TGGACACAGCTGAAATGTGCCTTGAGGGTGCTGCTGTTCAAGTCATTCACTACTGGCAAGATCTGTTTTCTGTGCTTCATACAAATGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR CAA 90 bp CCTACCCCTACTGAGTGCAGTTCAGTGCTTCTGGACATAAACAGTATTTCTTACAATACCAGGCTCCTATaGGTTTGGAGAGCATTGGAT +
Preference number: 5 (lower is better)
Translates to: PTPTECSSVLLDINSISYNTRLL*VWRALD
Trigger: ATCCAATGCTCTCCAAACCAATAGGAGCCTGGTATT...GTAAGAAATACTGTTTATGTCCAGAAGCACTGAACTGCACTCAGTAGGGGTAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR CAA 90 bp CTTTCTCAACCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACAATACCAGGCTCCTATaGGTTTGGAGAGCATTGGAT +
Preference number: 5 (lower is better)
Translates to: LSQPPRETQQTFYRDVSNNTRLL*VWRALD
Trigger: ATCCAATGCTCTCCAAACCAATAGGAGCCTGGTATT...GTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGGTTGAGAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR CAA 90 bp CCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACCTACCCCTACCATCATTTGATAGATaGTTGAGGGACAGATTCAGA +
Preference number: 5 (lower is better)
Translates to: PPRETQQTFYRDVSNLPLPSFDR*LRDRFR
Trigger: TCTGAATCTGTCCCTCAACAATCTATCAAATGATGG...TAGGGGTAGGTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS CCA 90 bp AGACACTGGGGAGATCTGGGTCCAGTCTTTACACAGTGCAAACTGTaGCTCTTCAAAGGAGAAATCCAGTTCATCAAAACTATCGATTAT +
Preference number: 5 (lower is better)
Translates to: RHWGDLGPVFTQCKL*LFKGEIQFIKTIDY
Trigger: ATAATCGATAGTTTTGATGAACTGGATTTCTCCTTTGAAGAGCCACAGTTTGCACTGTGTAAAGACTGGACCCAGATCTCCCCAGTGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR CAA 90 bp CAACCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACCTACCCTGTGTCACCTTCTTATaGGAAGCCAAGAAAGTAAAA +
Preference number: 5 (lower is better)
Translates to: QPPRETQQTFYRDVSNLPCVTFL*EAKKVK
Trigger: TTTTACTTTCTTGGCTTCCAATAAGAAGGTGACACA...GGGTAGGTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS GCA 90 bp AAAGCATCACACAGAATATTCAGACCAGCATCATCCAAGATATTGTaGCCAAGGTCTAGGCTCCACAAGTTTGAGTTGTTCACAAGAACA +
Preference number: 5 (lower is better)
Translates to: KASHRIFRPASSKIL*PRSRLHKFELFTRT
Trigger: TGTTCTTGTGAACAACTCAAACTTGTGGAGCCTAGACCTTGGGCACAATATCTTGGATGATGCTGGTCTGAATATTCTGTGTGATGCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS CCA 90 bp TTTTTCAAGTCTGCCCTTGCTGTCAGTCTCATAGTCTTTAGAGTGTaGCAGTGCTTAAGACAGAATGAATATATACGCAACTGGGGTTCT +
Preference number: 5 (lower is better)
Translates to: FFKSALAVSLIVFRV*QCLRQNEYIRNWGS
Trigger: AGAACCCCAGTTGCGTATATATTCATTCTGTCTTAAGCACTGCCACACTCTAAAGACTATGAGACTGACAGCAAGGGCAGACTTGAAAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR CAA 90 bp AGTGCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTTGGAATTCCAGCAGCTCCTaGAAGGACTACCGTTTGTGG +
Preference number: 5 (lower is better)
Translates to: SASGHKQYFLQVKDFATWNSSSS*KDYRLW
Trigger: CCACAAACGGTAGTCCTTCAAGGAGCTGCTGGAATT...CCAAGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGCACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR CAA 90 bp CTTTCTCAACCTCCACGTGAAACCCAACAAACATTTTACAGAGACGTGAGCAACGCTTTTCTCCTTTACTaGGCTAATCTCTTTCCCATT +
Preference number: 5 (lower is better)
Translates to: LSQPPRETQQTFYRDVSNAFLLY*ANLFPI
Trigger: AATGGGAAAGAGATTAGCCAAGTAAAGGAGAAAAGC...GTTGCTCACGTCTCTGTAAAATGTTTGTTGGGTTTCACGTGGAGGTTGAGAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR CAA 90 bp CCTACCCCTACTGAGTGCAGTTCAGTGCTTCTGGACATAAACAGTATTTCTTACGCTAGAAATTCCATTTaGCATGTTGGAGATCTCAAG +
Preference number: 5 (lower is better)
Translates to: PTPTECSSVLLDINSISYARNSI*HVGDLK
Trigger: CTTGAGATCTCCAACATGCAAAATGGAATTTCTAGC...GTAAGAAATACTGTTTATGTCCAGAAGCACTGAACTGCACTCAGTAGGGGTAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS GCA 90 bp GGGTTCTTCGTCAACCCTCACGATAATCTTTTGGAAATACATCAGTaGCTGAGTGATGAATTCTTGATCTTGAGTCTCATATATACAGTG +
Preference number: 5 (lower is better)
Translates to: GFFVNPHDNLLEIHQ*LSDEFLILSLIYTV
Trigger: CACTGTATATATGAGACTCAAGATCAAGAATTCATCACTCAGGCACTGATGTATTTCCAAAAGATTATCGTGAGGGTTGACGAAGAACCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR CAA 90 bp TTCAGTGCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTTTCTCCACTTGTCCCTaGAGAACAGCACAGATCATC +
Preference number: 5 (lower is better)
Translates to: FSASGHKQYFLQVKDFATFSTCP*RTAQII
Trigger: GATGATCTGTGCTGTTCTCAAGGGACAAGTGGAGAA...AGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGCACTGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR CAA 90 bp TTCAGTGCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTAAAGCACATGCTTCATaGTCCAGATGCCTTCAACAG +
Preference number: 5 (lower is better)
Translates to: FSASGHKQYFLQVKDFATKAHAS*SRCLQQ
Trigger: CTGTTGAAGGCATCTGGACAATGAAGCATGTGCTTT...AGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGCACTGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR CAA 90 bp GTGCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTTGGAATGCTTTCGGAGATTTaGCTGGTAAAGCACATGCTT +
Preference number: 5 (lower is better)
Translates to: VLLDINSISYKLKTLPLGMLSEI*LVKHML
Trigger: AAGCATGTGCTTTACCAGCAAAATCTCCGAAAGCAT...TCCAAGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGCAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR CAA 90 bp GCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTTGGAAGCTTGCTGAAGAACCTTaGCATCCAGGAAAAGCAAAA +
Preference number: 5 (lower is better)
Translates to: ASGHKQYFLQVKDFATWKLAEEP*HPGKAK
Trigger: TTTTGCTTTTCCTGGATGCAAAGGTTCTTCAGCAAG...CTTCCAAGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR CAA 90 bp GCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTTGGAAGCACAGAAAACAGATCTaGCCAGTAGTGAATGACTTG +
Preference number: 5 (lower is better)
Translates to: ASGHKQYFLQVKDFATWKHRKQI*PVVNDL
Trigger: CAAGTCATTCACTACTGGCAAGATCTGTTTTCTGTG...CTTCCAAGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS TCA 90 bp TCAAGATGTGTCACCTTCTTATTGGAAGCCAAGAAAGTAAAATCCTaGCAGCCATTCAGGAAATCGACAGCTCTGAATATTAGTTTTTGT +
Preference number: 5 (lower is better)
Translates to: SRCVTFLLEAKKVKS*QPFRKSTALNISFC
Trigger: ACAAAAACTAATATTCAGAGCTGTCGATTTCCTGAATGGCTGTCAGGATTTTACTTTCTTGGCTTCCAATAAGAAGGTGACACATCTTGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR CAA 90 bp TTCAGTGCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTCCTTTTTCAACAATGTaGTCTTCCCAATTCCAGCAG +
Preference number: 5 (lower is better)
Translates to: FSASGHKQYFLQVKDFATPFSTM*SSQFQQ
Trigger: CTGCTGGAATTGGGAAGACAACATTGTTGAAAAAGG...AGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGCACTGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR CAA 90 bp TTCAGTGCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTCCTCACGATAATCTTTaGGAAATACATCAGTGCCTG +
Preference number: 5 (lower is better)
Translates to: FSASGHKQYFLQVKDFATPHDNL*EIHQCL
Trigger: CAGGCACTGATGTATTTCCAAAAGATTATCGTGAGG...AGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGCACTGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR CAA 90 bp GTGCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTTGGAGCTAGAAATTCCATTTaGCATGTTGGAGATCTCAAG +
Preference number: 5 (lower is better)
Translates to: VLLDINSISYKLKTLPLGARNSI*HVGDLK
Trigger: CTTGAGATCTCCAACATGCAAAATGGAATTTCTAGC...TCCAAGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGCAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS-3UTR CAA 90 bp AGTGCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTTGGAAGGTCTTTAGTCCATaGACTCCTAAATCAGTTTCT +
Preference number: 5 (lower is better)
Translates to: SASGHKQYFLQVKDFATWKVFSP*TPKSVS
Trigger: AGAAACTGATTTAGGAGTCAATGGACTAAAGACCTT...CCAAGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGCACT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS-3UTR CAA 90 bp AGTGCTTCTGGACATAAACAGTATTTCTTACAAGTTAAAGACTTTGCCACTTGGATTCCATTTTGCATGTaGGAGATCTCAAGACTTTAC +
Preference number: 5 (lower is better)
Translates to: SASGHKQYFLQVKDFATWIPFCM*EISRLY
Trigger: GTAAAGTCTTGAGATCTCCAACATGCAAAATGGAAT...CCAAGTGGCAAAGTCTTTAACTTGTAAGAAATACTGTTTATGTCCAGAAGCACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS CAA 90 bp TCCGCCAGCTTGTTTTGTCCCAGGTCCAGATGTACCAAGCTCCTGTaGTGCAGGAGAGCGGTGGAGAGATGCTCACTGCCAATCGGAGTG +
Preference number: 6 (lower is better)
Translates to: SASLFCPRSRCTKLL*CRRAVERCSLPIGV
Trigger: CACTCCGATTGGCAGTGAGCATCTCTCCACCGCTCTCCTGCACAACAGGAGCTTGGTACATCTGGACCTGGGACAAAACAAGCTGGCGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS CAA 72 bp ACAGCAGCCTTGCACAGGCTCCTCAACAGGGTTTCATaGGGCAGAGTAACACAGCCCACAGGTATGCGTGGA +
Preference number: 6 (lower is better)
Translates to: TAALHRLLNRVS*GRVTQPTGMRG
Trigger: TCCACGCATACCTGTGGGCTGTGTTACTCTGCCCAATGAAACCCTGTTGAGGAGCCTGTGCAAGGCTGCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS GCA 72 bp TTTTGTCCCAGGTCCAGATGTACCAAGCTCCTGTTGTaGAGGAGAGCGGTGGAGAGATGCTCACTGCCAATC +
Preference number: 6 (lower is better)
Translates to: FCPRSRCTKLLL*RRAVERCSLPI
Trigger: GATTGGCAGTGAGCATCTCTCCACCGCTCTCCTGCACAACAGGAGCTTGGTACATCTGGACCTGGGACAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS CCA 72 bp ACAGCTCATCAACTCCAGCTCCTGAAGATTGCAGTGTaGCTGCTGGAGGGAGTGACACAGAAGCTTCACTCC +
Preference number: 6 (lower is better)
Translates to: TAHQLQLLKIAV*LLEGVTQKLHS
Trigger: GGAGTGAAGCTTCTGTGTCACTCCCTCCAGCAGCCACACTGCAATCTTCAGGAGCTGGAGTTGATGAGCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS CAA 90 bp GTTTTGCAGGTCTCTTCAACACGGCCACCTTTCTCCACTTGTCCCTaGAGAACAGCACAGATCATCTGGCACATGTGGCACACGTGGCAC +
Preference number: 6 (lower is better)
Translates to: VLQVSSTRPPFSTCP*RTAQIIWHMWHTWH
Trigger: GTGCCACGTGTGCCACATGTGCCAGATGATCTGTGCTGTTCTCAAGGGACAAGTGGAGAAAGGTGGCCGTGTTGAAGAGACCTGCAAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS GCA 72 bp CATGCTTCATTGTCCAGATGCCTTCAACAGCAGCCTTaGACAGGCTCCTCAACAGGGTTTCATTGGGCAGAG +
Preference number: 6 (lower is better)
Translates to: HASLSRCLQQQP*TGSSTGFHWAE
Trigger: CTCTGCCCAATGAAACCCTGTTGAGGAGCCTGTGCAAGGCTGCTGTTGAAGGCATCTGGACAATGAAGCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS CAA 72 bp GTCTCTTCAACACGGCCACCTTTCTCCACTTGTCCCTaGAGAACAGCACAGATCATCTGGCACATGTGGCAC +
Preference number: 6 (lower is better)
Translates to: VSSTRPPFSTCP*RTAQIIWHMWH
Trigger: GTGCCACATGTGCCAGATGATCTGTGCTGTTCTCAAGGGACAAGTGGAGAAAGGTGGCCGTGTTGAAGAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS CAA 90 bp ATGCCTTCAACAGCAGCCTTGCACAGGCTCCTCAACAGGGTTTCATaGGGCAGAGTAACACAGCCCACAGGTATGCGTGGAAATAAGCTG +
Preference number: 6 (lower is better)
Translates to: MPSTAALHRLLNRVS*GRVTQPTGMRGNKL
Trigger: CAGCTTATTTCCACGCATACCTGTGGGCTGTGTTACTCTGCCCAATGAAACCCTGTTGAGGAGCCTGTGCAAGGCTGCTGTTGAAGGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS CCA 72 bp TGTCCCTTGAGAACAGCACAGATCATCTGGCACATGTaGCACACGTGGCACATGTGGAAAAGCCTCCAATTC +
Preference number: 6 (lower is better)
Translates to: CPLRTAQIIWHM*HTWHMWKSLQF
Trigger: GAATTGGAGGCTTTTCCACATGTGCCACGTGTGCCACATGTGCCAGATGATCTGTGCTGTTCTCAAGGGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS GCA 72 bp GACCTAAGCACAAGGCTCTGCAGAGTACACTGTGGATaGTTCAAGGTATGGCTGAGCAGCTTTATCCCTTCA +
Preference number: 6 (lower is better)
Translates to: DLSTRLCRVHCG*FKVWLSSFIPS
Trigger: TGAAGGGATAAAGCTGCTCAGCCATACCTTGAAGCATCCACAGTGTACTCTGCAGAGCCTTGTGCTTAGGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS GCA 72 bp ATCGGAGTGAAACTGCAAGACCTAAGCACAAGGCTCTaGAGAGTACACTGTGGATGCTTCAAGGTATGGCTG +
Preference number: 6 (lower is better)
Translates to: IGVKLQDLSTRL*RVHCGCFKVWL
Trigger: CAGCCATACCTTGAAGCATCCACAGTGTACTCTGCAGAGCCTTGTGCTTAGGTCTTGCAGTTTCACTCCGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS CAA 72 bp GCTTTCGGAGATTTTGCTGGTAAAGCACATGCTTCATaGTCCAGATGCCTTCAACAGCAGCCTTGCACAGGC +
Preference number: 6 (lower is better)
Translates to: AFGDFAGKAHAS*SRCLQQQPCTG
Trigger: GCCTGTGCAAGGCTGCTGTTGAAGGCATCTGGACAATGAAGCATGTGCTTTACCAGCAAAATCTCCGAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS CAA 72 bp ACACAGAAGCTTCACTCCATTATCCGCCAGCTTGTTTaGTCCCAGGTCCAGATGTACCAAGCTCCTGTTGTG +
Preference number: 6 (lower is better)
Translates to: TQKLHSIIRQLV*SQVQMYQAPVV
Trigger: CACAACAGGAGCTTGGTACATCTGGACCTGGGACAAAACAAGCTGGCGGATAATGGAGTGAAGCTTCTGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS TCA 72 bp CCAGGGGTCAAACCACAGTTTTCCAATCCTAGCCTCTaGACGTGGCAGTTGGGATTTCTTAAAGCATCACAC +
Preference number: 6 (lower is better)
Translates to: PGVKPQFSNPSL*TWQLGFLKASH
Trigger: GTGTGATGCTTTAAGAAATCCCAACTGCCACGTTCAGAGGCTAGGATTGGAAAACTGTGGTTTGACCCCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS GCA 72 bp AGACACTGGGGAGATCTGGGTCCAGTCTTTACACAGTaGAAACTGTGGCTCTTCAAAGGAGAAATCCAGTTC +
Preference number: 6 (lower is better)
Translates to: RHWGDLGPVFTQ*KLWLFKGEIQF
Trigger: GAACTGGATTTCTCCTTTGAAGAGCCACAGTTTGCACTGTGTAAAGACTGGACCCAGATCTCCCCAGTGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS CAA 72 bp CTTCCCAATTCCAGCAGCTCCTTGAAGGACTACCGTTaGTGGAGCCTCGGAAGTTTGGATATCCTCATCAAA +
Preference number: 6 (lower is better)
Translates to: LPNSSSSLKDYR*WSLGSLDILIK
Trigger: TTTGATGAGGATATCCAAACTTCCGAGGCTCCACAAACGGTAGTCCTTCAAGGAGCTGCTGGAATTGGGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS CAA 72 bp ATATTGTGCCCAAGGTCTAGGCTCCACAAGTTTGAGTaGTTCACAAGAACAGAAGCCAGATCCCCACAAGCC +
Preference number: 6 (lower is better)
Translates to: ILCPRSRLHKFE*FTRTEARSPQA
Trigger: GGCTTGTGGGGATCTGGCTTCTGTTCTTGTGAACAACTCAAACTTGTGGAGCCTAGACCTTGGGCACAATAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS CAA 72 bp CCAAGATATTGTGCCCAAGGTCTAGGCTCCACAAGTTaGAGTTGTTCACAAGAACAGAAGCCAGATCCCCAC +
Preference number: 6 (lower is better)
Translates to: PRYCAQGLGSTS*SCSQEQKPDPH
Trigger: GTGGGGATCTGGCTTCTGTTCTTGTGAACAACTCAAACTTGTGGAGCCTAGACCTTGGGCACAATATCTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS CAA 90 bp TCATCCAAGATATTGTGCCCAAGGTCTAGGCTCCACAAGTTTGAGTaGTTCACAAGAACAGAAGCCAGATCCCCACAAGCCTTACTCGTG +
Preference number: 6 (lower is better)
Translates to: SSKILCPRSRLHKFE*FTRTEARSPQALLV
Trigger: CACGAGTAAGGCTTGTGGGGATCTGGCTTCTGTTCTTGTGAACAACTCAAACTTGTGGAGCCTAGACCTTGGGCACAATATCTTGGATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS CAA 90 bp CAGCATCATCCAAGATATTGTGCCCAAGGTCTAGGCTCCACAAGTTaGAGTTGTTCACAAGAACAGAAGCCAGATCCCCACAAGCCTTAC +
Preference number: 6 (lower is better)
Translates to: QHHPRYCAQGLGSTS*SCSQEQKPDPHKPY
Trigger: GTAAGGCTTGTGGGGATCTGGCTTCTGTTCTTGTGAACAACTCAAACTTGTGGAGCCTAGACCTTGGGCACAATATCTTGGATGATGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS TCA 72 bp GGGCCCTCGCTGCTAGGCCAGTGCTTTGATATTAACTaGGCAAAGCTTTTCTCCTTTACTTGGCTAATCTCT +
Preference number: 6 (lower is better)
Translates to: GPSLLGQCFDIN*AKLFSFTWLIS
Trigger: AGAGATTAGCCAAGTAAAGGAGAAAAGCTTTGCTCAGTTAATATCAAAGCACTGGCCTAGCAGCGAGGGCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS CCA 72 bp CCCAATTCCAGCAGCTCCTTGAAGGACTACCGTTTGTaGAGCCTCGGAAGTTTGGATATCCTCATCAAATAT +
Preference number: 6 (lower is better)
Translates to: PNSSSSLKDYRL*SLGSLDILIKY
Trigger: ATATTTGATGAGGATATCCAAACTTCCGAGGCTCCACAAACGGTAGTCCTTCAAGGAGCTGCTGGAATTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS CAA 90 bp TTAATTCATGCTTTCGGAGATTTTGCTGGTAAAGCACATGCTTCATaGTCCAGATGCCTTCAACAGCAGCCTTGCACAGGCTCCTCAACA +
Preference number: 6 (lower is better)
Translates to: LIHAFGDFAGKAHAS*SRCLQQQPCTGSST
Trigger: TGTTGAGGAGCCTGTGCAAGGCTGCTGTTGAAGGCATCTGGACAATGAAGCATGTGCTTTACCAGCAAAATCTCCGAAAGCATGAATTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS TCA 72 bp CAGGTATGCGTGGAAATAAGCTGCAGATATAGTATGTaGACAGAGCCGTGCTGGTTTTGCAGGTCTCTTCAA +
Preference number: 6 (lower is better)
Translates to: QVCVEISCRYSM*TEPCWFCRSLQ
Trigger: TTGAAGAGACCTGCAAAACCAGCACGGCTCTGTTCACATACTATATCTGCAGCTTATTTCCACGCATACCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS TCA 72 bp TCTGCAGAGTACACTGTGGATGCTTCAAGGTATGGCTaGGCAGCTTTATCCCTTCATCTTCTAAGACGTTGT +
Preference number: 6 (lower is better)
Translates to: SAEYTVDASRYG*AALSLHLLRRC
Trigger: ACAACGTCTTAGAAGATGAAGGGATAAAGCTGCTCAGCCATACCTTGAAGCATCCACAGTGTACTCTGCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS CCA 72 bp TCAGAAATACCAGGCTCCTATTGGTTTGGAGAGCATTaGATAACTTTTGACAACGGGCTACATTCAGGTCGC +
Preference number: 6 (lower is better)
Translates to: SEIPGSYWFGEH*ITFDNGLHSGR
Trigger: GCGACCTGAATGTAGCCCGTTGTCAAAAGTTATCCAATGCTCTCCAAACCAATAGGAGCCTGGTATTTCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS CAA 90 bp GAGGTTTTTGCAATAAAGGCACTAGTCGCTTCCAAGCTGTGGATCTaGTCGCTACTAATAAGTAGGACTCAGGAAGCATCACTTTCCTCA +
Preference number: 6 (lower is better)
Translates to: EVFAIKALVASKLWI*SLLISRTQEASLSS
Trigger: TGAGGAAAGTGATGCTTCCTGAGTCCTACTTATTAGTAGCGACAAGATCCACAGCTTGGAAGCGACTAGTGCCTTTATTGCAAAAACCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS CAA 90 bp TCTAAGACGTTGTCTGACAAGCATAAATGTGTCAGCCTCTTGCTTTaGGTGAGAGCCGAGGAAAGAACTTTACAACCAGCTTTTGTGAGG +
Preference number: 6 (lower is better)
Translates to: SKTLSDKHKCVSLLL*VRAEERTLQPAFVR
Trigger: CCTCACAAAAGCTGGTTGTAAAGTTCTTTCCTCGGCTCTCACCAAAAGCAAGAGGCTGACACATTTATGCTTGTCAGACAACGTCTTAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS TCA 72 bp TATGAAGCACAGAAAACAGATCTTGCCAGTAGTGAATaGCTTGAACAGCAGCACCCTCAAGGCACATTTCAG +
Preference number: 6 (lower is better)
Translates to: YEAQKTDLASSE*LEQQHPQGTFQ
Trigger: CTGAAATGTGCCTTGAGGGTGCTGCTGTTCAAGTCATTCACTACTGGCAAGATCTGTTTTCTGTGCTTCATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS GCA 72 bp CACAGAATATTCAGACCAGCATCATCCAAGATATTGTaGCCAAGGTCTAGGCTCCACAAGTTTGAGTTGTTC +
Preference number: 6 (lower is better)
Translates to: HRIFRPASSKIL*PRSRLHKFELF
Trigger: GAACAACTCAAACTTGTGGAGCCTAGACCTTGGGCACAATATCTTGGATGATGCTGGTCTGAATATTCTGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS CCA 72 bp GGAGATCTGGGTCCAGTCTTTACACAGTGCAAACTGTaGCTCTTCAAAGGAGAAATCCAGTTCATCAAAACT +
Preference number: 6 (lower is better)
Translates to: GDLGPVFTQCKL*LFKGEIQFIKT
Trigger: AGTTTTGATGAACTGGATTTCTCCTTTGAAGAGCCACAGTTTGCACTGTGTAAAGACTGGACCCAGATCTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS CCA 72 bp CACTTTCCTCAGCAAACTACTAATGAGAAAAGACACTaGGGAGATCTGGGTCCAGTCTTTACACAGTGCAAA +
Preference number: 6 (lower is better)
Translates to: HFPQQTTNEKRH*GDLGPVFTQCK
Trigger: TTTGCACTGTGTAAAGACTGGACCCAGATCTCCCCAGTGTCTTTTCTCATTAGTAGTTTGCTGAGGAAAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS CAA 72 bp TTGTCTGACAAGCATAAATGTGTCAGCCTCTTGCTTTaGGTGAGAGCCGAGGAAAGAACTTTACAACCAGCT +
Preference number: 6 (lower is better)
Translates to: LSDKHKCVSLLL*VRAEERTLQPA
Trigger: AGCTGGTTGTAAAGTTCTTTCCTCGGCTCTCACCAAAAGCAAGAGGCTGACACATTTATGCTTGTCAGACAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS CCA 72 bp TCTGCCCTTGCTGTCAGTCTCATAGTCTTTAGAGTGTaGCAGTGCTTAAGACAGAATGAATATATACGCAAC +
Preference number: 6 (lower is better)
Translates to: SALAVSLIVFRV*QCLRQNEYIRN
Trigger: GTTGCGTATATATTCATTCTGTCTTAAGCACTGCCACACTCTAAAGACTATGAGACTGACAGCAAGGGCAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS CAA 72 bp AAGACGTTGTCTGACAAGCATAAATGTGTCAGCCTCTaGCTTTTGGTGAGAGCCGAGGAAAGAACTTTACAA +
Preference number: 6 (lower is better)
Translates to: KTLSDKHKCVSL*LLVRAEERTLQ
Trigger: TTGTAAAGTTCTTTCCTCGGCTCTCACCAAAAGCAAGAGGCTGACACATTTATGCTTGTCAGACAACGTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS CAA 90 bp TCATCTTCTAAGACGTTGTCTGACAAGCATAAATGTGTCAGCCTCTaGCTTTTGGTGAGAGCCGAGGAAAGAACTTTACAACCAGCTTTT +
Preference number: 6 (lower is better)
Translates to: SSSKTLSDKHKCVSL*LLVRAEERTLQPAF
Trigger: AAAAGCTGGTTGTAAAGTTCTTTCCTCGGCTCTCACCAAAAGCAAGAGGCTGACACATTTATGCTTGTCAGACAACGTCTTAGAAGATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS CAA 90 bp CTTAAAGCATCACACAGAATATTCAGACCAGCATCATCCAAGATATaGTGCCCAAGGTCTAGGCTCCACAAGTTTGAGTTGTTCACAAGA +
Preference number: 6 (lower is better)
Translates to: LKASHRIFRPASSKI*CPRSRLHKFELFTR
Trigger: TCTTGTGAACAACTCAAACTTGTGGAGCCTAGACCTTGGGCACAATATCTTGGATGATGCTGGTCTGAATATTCTGTGTGATGCTTTAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS TCA 72 bp GTCACCTTCTTATTGGAAGCCAAGAAAGTAAAATCCTaGCAGCCATTCAGGAAATCGACAGCTCTGAATATT +
Preference number: 6 (lower is better)
Translates to: VTFLLEAKKVKS*QPFRKSTALNI
Trigger: AATATTCAGAGCTGTCGATTTCCTGAATGGCTGTCAGGATTTTACTTTCTTGGCTTCCAATAAGAAGGTGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS TCA 72 bp TGCATTTCAAGGCTTCACATAAGGTCTTTAGTCCATTaGCTCCTAAATCAGTTTCTTTCAGGTCAAGATGTG +
Preference number: 6 (lower is better)
Translates to: CISRLHIRSLVH*LLNQFLSGQDV
Trigger: CACATCTTGACCTGAAAGAAACTGATTTAGGAGTCAATGGACTAAAGACCTTATGTGAAGCCTTGAAATGCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS CAA 72 bp AGTAACTCTTCTCTTACCTCCATGGATATTGTAAGGTaGAAAGTTTCCTCCAGTTGTCGTACTCTGTCTTTA +
Preference number: 6 (lower is better)
Translates to: SNSSLTSMDIVR*KVSSSCRTLSL
Trigger: TAAAGACAGAGTACGACAACTGGAGGAAACTTTCAACCTTACAATATCCATGGAGGTAAGAGAAGAGTTACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS CAA 72 bp CTTTTGGAAATACATCAGTGCCTGAGTGATGAATTCTaGATCTTGAGTCTCATATATACAGTGGAGCAAGTC +
Preference number: 6 (lower is better)
Translates to: LLEIHQCLSDEF*ILSLIYTVEQV
Trigger: GACTTGCTCCACTGTATATATGAGACTCAAGATCAAGAATTCATCACTCAGGCACTGATGTATTTCCAAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS CAA 72 bp TGCTTTCATACAGATCCATTTCTATCAGGGACTCATTaGTATGAAGCACAGAAAACAGATCTTGCCAGTAGT +
Preference number: 6 (lower is better)
Translates to: CFHTDPFLSGTH*YEAQKTDLASS
Trigger: ACTACTGGCAAGATCTGTTTTCTGTGCTTCATACAAATGAGTCCCTGATAGAAATGGATCTGTATGAAAGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS CCA 72 bp TTCTGTATTAGGACACTCTGGCCCAATGACCAAATGTaGATTATTAATTCTTACATCGACCAGAAACTTCTT +
Preference number: 6 (lower is better)
Translates to: FCIRTLWPNDQM*IINSYIDQKLL
Trigger: AAGAAGTTTCTGGTCGATGTAAGAATTAATAATCCACATTTGGTCATTGGGCCAGAGTGTCCTAATACAGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000084763.5
ENSMUST00000142623.3
CDS CAA 72 bp TTGCATTTCAAGGCTTCACATAAGGTCTTTAGTCCATaGACTCCTAAATCAGTTTCTTTCAGGTCAAGATGT +
Preference number: 6 (lower is better)
Translates to: LHFKASHKVFSP*TPKSVSFRSRC
Trigger: ACATCTTGACCTGAAAGAAACTGATTTAGGAGTCAATGGACTAAAGACCTTATGTGAAGCCTTGAAATGCAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5
CDS CAA 90 bp CACGATAATCTTTTGGAAATACATCAGTGCCTGAGTGATGAATTCTaGATCTTGAGTCTCATATATACAGTGGAGCAAGTCTTGAAATCT +
Preference number: 6 (lower is better)
Translates to: HDNLLEIHQCLSDEF*ILSLIYTVEQVLKS
Trigger: AGATTTCAAGACTTGCTCCACTGTATATATGAGACTCAAGATCAAGAATTCATCACTCAGGCACTGATGTATTTCCAAAAGATTATCGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084763.5