RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NLRP12 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078817

Ensembl transcript IDs: ENSMUST00000108653.4

Found 300 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGGAGGCACTCCAGGTCCAGGGGTGGTGAGTCTAAGCCTCAGGTCTaGGTAAAGAAAGGCCTACTTTTAAATCTCACGTGGCCGCCATAT +
Preference number: 1 (lower is better)
Translates to: RRHSRSRGGESKPQV*VKKGLLLNLTWPPY
Trigger: ATATGGCGGCCACGTGAGATTTAAAAGTAGGCCTTTCTTTACTCAGACCTGAGGCTTAGACTCACCACCCCTGGACCTGGAGTGCCTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR GCA 90 bp AGTGTCGATCAAAGTGGAGGCCCTCTCCGCGGCTTGGCGGGAAAGTaGATCCATTTTGTTTGTCTCTGTGTGTACATGGCGTCTGAAAAG +
Preference number: 1 (lower is better)
Translates to: SVDQSGGPLRGLAGK*IHFVCLCVYMASEK
Trigger: CTTTTCAGACGCCATGTACACACAGAGACAAACAAAATGGATGCACTTTCCCGCCAAGCCGCGGAGAGGGCCTCCACTTTGATCGACACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR TCA 90 bp TGTGGGGCACACTTCTGGACTGTACATAGAAAGTGCTACTACTTTTaGGTCTCTCCTGTGGGCACCATTCACAGGTCGGCTGCTTTCATG +
Preference number: 1 (lower is better)
Translates to: CGAHFWTVHRKCYYF*VSPVGTIHRSAAFM
Trigger: CATGAAAGCAGCCGACCTGTGAATGGTGCCCACAGGAGAGACTCAAAAGTAGTAGCACTTTCTATGTACAGTCCAGAAGTGTGCCCCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR TCA 90 bp CACCATTCACAGGTCGGCTGCTTTCATGCATGTGTAGTGTGTATCTaGATCCAGATGAAGGTTTCCTGGAACTGGGACATGTGGGTGCTA +
Preference number: 1 (lower is better)
Translates to: HHSQVGCFHACVVCI*IQMKVSWNWDMWVL
Trigger: TAGCACCCACATGTCCCAGTTCCAGGAAACCTTCATCTGGATTCAGATACACACTACACATGCATGAAAGCAGCCGACCTGTGAATGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR GCA 90 bp GTTTCCTGGAACTGGGACATGTGGGTGCTATTGAATGAACCAAGGTaGTATGGGAGCAACCAGTGCCCTCAGCCTCCAAACATGAATAAT +
Preference number: 1 (lower is better)
Translates to: VSWNWDMWVLLNEPR*YGSNQCPQPPNMNN
Trigger: ATTATTCATGTTTGGAGGCTGAGGGCACTGGTTGCTCCCATAGCACCTTGGTTCATTCAATAGCACCCACATGTCCCAGTTCCAGGAAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CCA 90 bp AGCCTGGGGTACTTACTTGCCTTCAACCTGCCTGGCTGGCTGGTCTaGCTAAGAACTGACTATAAAGTTTCAGGTTTATTACCACAGCAG +
Preference number: 1 (lower is better)
Translates to: SLGYLLAFNLPGWLV*LRTDYKVSGLLPQQ
Trigger: CTGCTGTGGTAATAAACCTGAAACTTTATAGTCAGTTCTTAGCCAGACCAGCCAGCCAGGCAGGTTGAAGGCAAGTAAGTACCCCAGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR GCA 90 bp TTTGAGTCTCTCCTGTGGGCACCATTCACAGGTCGGCTGCTTTCATaGATGTGTAGTGTGTATCTGAATCCAGATGAAGGTTTCCTGGAA +
Preference number: 1 (lower is better)
Translates to: FESLLWAPFTGRLLS*MCSVYLNPDEGFLE
Trigger: TTCCAGGAAACCTTCATCTGGATTCAGATACACACTACACATGCATGAAAGCAGCCGACCTGTGAATGGTGCCCACAGGAGAGACTCAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CCA 90 bp TCTGGACTGTACATAGAAAGTGCTACTACTTTTGAGTCTCTCCTGTaGGCACCATTCACAGGTCGGCTGCTTTCATGCATGTGTAGTGTG +
Preference number: 1 (lower is better)
Translates to: SGLYIESATTFESLL*APFTGRLLSCMCSV
Trigger: CACACTACACATGCATGAAAGCAGCCGACCTGTGAATGGTGCCCACAGGAGAGACTCAAAAGTAGTAGCACTTTCTATGTACAGTCCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR GCA 90 bp GCCCTATCTAAGCTTTTAAGTGGAAAGTGCTTCCCTTTTGTGTGTTaGCATGTGGAGAAAGCATCGGAACTTCAATCAACCAGAGACTCC +
Preference number: 1 (lower is better)
Translates to: ALSKLLSGKCFPFVC*HVEKASELQSTRDS
Trigger: GGAGTCTCTGGTTGATTGAAGTTCCGATGCTTTCTCCACATGGCAACACACAAAAGGGAAGCACTTTCCACTTAAAAGCTTAGATAGGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR TCA 90 bp ATCTGCGTGGAATCTACATCAAACCCAGTGAGCTCCATCAAAGGTTaGGTGTTTAGGTCTCAAGCAGAACAATTTTGTCAACCTGCACTT +
Preference number: 1 (lower is better)
Translates to: ICVESTSNPVSSIKG*VFRSQAEQFCQPAL
Trigger: AAGTGCAGGTTGACAAAATTGTTCTGCTTGAGACCTAAACACTCAACCTTTGATGGAGCTCACTGGGTTTGATGTAGATTCCACGCAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR TCA 90 bp AATCCCCGTCCTAAATTATCTGCGTGGAATCTACATCAAACCCAGTaGGCTCCATCAAAGGTTGAGTGTTTAGGTCTCAAGCAGAACAAT +
Preference number: 1 (lower is better)
Translates to: NPRPKLSAWNLHQTQ*APSKVECLGLKQNN
Trigger: ATTGTTCTGCTTGAGACCTAAACACTCAACCTTTGATGGAGCTCACTGGGTTTGATGTAGATTCCACGCAGATAATTTAGGACGGGGATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR TCA 90 bp AACCAAGGTGCTATGGGAGCAACCAGTGCCCTCAGCCTCCAAACATaGATAATAAAGTCTTGTTCTCTTGATTTTGCTGCTTTCTCAGTT +
Preference number: 1 (lower is better)
Translates to: NQGAMGATSALSLQT*IIKSCSLDFAAFSV
Trigger: AACTGAGAAAGCAGCAAAATCAAGAGAACAAGACTTTATTATTCATGTTTGGAGGCTGAGGGCACTGGTTGCTCCCATAGCACCTTGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR TCA 90 bp GCAGGTCCCTGTGGAAATGCTTCAATCTGTGGTACTCAAACTGTGTaGCATTTTGTTCTTTGTAAGAAGTGCCGCAGAGTTTGTAGTGTT +
Preference number: 1 (lower is better)
Translates to: AGPCGNASICGTQTV*HFVLCKKCRRVCSV
Trigger: AACACTACAAACTCTGCGGCACTTCTTACAAAGAACAAAATGTCACACAGTTTGAGTACCACAGATTGAAGCATTTCCACAGGGACCTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR GCA 90 bp CAGCCCTTGAGTACAATTTTTGAAAAATTACCTTGTGGGTCTTTATaGTGTGACTTGGCCAGTAGATGGCAGTCTTGGTCCATGGAAATG +
Preference number: 1 (lower is better)
Translates to: QPLSTIFEKLPCGSL*CDLASRWQSWSMEM
Trigger: CATTTCCATGGACCAAGACTGCCATCTACTGGCCAAGTCACAGCATAAAGACCCACAAGGTAATTTTTCAAAAATTGTACTCAAGGGCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CCA 90 bp GTACAATTTTTGAAAAATTACCTTGTGGGTCTTTATGCTGTGACTTaGCCAGTAGATGGCAGTCTTGGTCCATGGAAATGTCTAGGACTC +
Preference number: 1 (lower is better)
Translates to: VQFLKNYLVGLYAVT*PVDGSLGPWKCLGL
Trigger: GAGTCCTAGACATTTCCATGGACCAAGACTGCCATCTACTGGCCAAGTCACAGCATAAAGACCCACAAGGTAATTTTTCAAAAATTGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR GCA 90 bp ACTATAAAGTTTCAGGTTTATTACCACAGCAGGTCCCTGTGGAAATaGTTCAATCTGTGGTACTCAAACTGTGTGACATTTTGTTCTTTG +
Preference number: 1 (lower is better)
Translates to: TIKFQVYYHSRSLWK*FNLWYSNCVTFCSL
Trigger: CAAAGAACAAAATGTCACACAGTTTGAGTACCACAGATTGAAGCATTTCCACAGGGACCTGCTGTGGTAATAAACCTGAAACTTTATAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR TCA 90 bp CCTTTAAGCATAGCCACATTTAAGCCCACATTTGTTTATATACTGTaGGTCTTTTCCATTTCTATACATCATGGCCAGTTCCTTTTAGTG +
Preference number: 1 (lower is better)
Translates to: PLSIATFKPTFVYIL*VFSISIHHGQFLLV
Trigger: CACTAAAAGGAACTGGCCATGATGTATAGAAATGGAAAAGACTCACAGTATATAAACAAATGTGGGCTTAAATGTGGCTATGCTTAAAGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR TCA 90 bp TACCTGGGGGCTCCATGTGCGTCCTGTCGCTGCTTGGAGCTGTTACACCTATGTACTTACTGGGCCTCCTaGCCTAAGACGGTCCCATGT +
Preference number: 2 (lower is better)
Translates to: YLGAPCASCRCLELLHLCTYWAS*PKTVPC
Trigger: ACATGGGACCGTCTTAGGTCAGGAGGCCCAGTAAGT...ACATAGGTGTAACAGCTCCAAGCAGCGACAGGACGCACATGGAGCCCCCAGGTA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CCA 90 bp CATAAAGGAGCCGGGATCCCACATGGGCCTCGCTCGGAGGAGCTGAGCCTCAGGATAGGATGGGAGCATTaGCTGTCAACTATACCAGGT +
Preference number: 2 (lower is better)
Translates to: HKGAGIPHGPRSEELSLRIGWEH*LSTIPG
Trigger: ACCTGGTATAGTTGACAGCCAATGCTCCCATCCTAT...CCTGAGGCTCAGCTCCTCCGAGCGAGGCCCATGTGGGATCCCGGCTCCTTTATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR TCA 90 bp TTTACAGGAGCGGACAACCTGTGTGGGGGTTTAGGCTTGGAGTTTAATGGGTCCCTCGCTCGGAGGAGCTaGGCCTCAGGTCTTGGAAGT +
Preference number: 2 (lower is better)
Translates to: FTGADNLCGGLGLEFNGSLARRS*ASGLGS
Trigger: ACTTCCAAGACCTGAGGCTCAGCTCCTCCGAGCGAG...GGACCCATTAAACTCCAAGCCTAAACCCCCACACAGGTTGTCCGCTCCTGTAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR GCA 90 bp CATAAAGGAGCCGGGATCCCACATGGGCCTCGCTCGGAGGAGCTGAGCCTCAGGCAACTATACCAGGTGTaGAAATCTTGGGTTTTGAGG +
Preference number: 2 (lower is better)
Translates to: HKGAGIPHGPRSEELSLRQLYQV*KSWVLR
Trigger: CCTCAAAACCCAAGATTTGCACACCTGGTATAGTTG...CCTGAGGCTCAGCTCCTCCGAGCGAGGCCCATGTGGGATCCCGGCTCCTTTATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR TCA 90 bp TACCTGGGGGCTCCATGTGCGTCCTGTCGCTGCTTGGAGCTGTTACACCTATGTAGTCATGCACAGCCATaGTTTCTGCATCCTTGGCCA +
Preference number: 2 (lower is better)
Translates to: YLGAPCASCRCLELLHLCSHAQP*FLHPWP
Trigger: TGGCCAAGGATGCAGAAATCATGGCTGTGCATGACT...ACATAGGTGTAACAGCTCCAAGCAGCGACAGGACGCACATGGAGCCCCCAGGTA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR TCA 90 bp CGCGGCTTGGCGGGAAAGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGAATAGCCCAGGCTCATaGGGGCTGGGATTACAGGTG +
Preference number: 2 (lower is better)
Translates to: RGLAGKCIHFVCLCVYMANSPGS*GLGLQV
Trigger: CACCTGTAATCCCAGCCCTCATGAGCCTGGGCTATT...CGCCATGTACACACAGAGACAAACAAAATGGATGCACTTTCCCGCCAAGCCGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CCA 90 bp CATAAAGGAGCCGGGATCCCACATGGGCCTCGCTCGGAGGAGCTGAGCCTCAGGTTGAGAAACTGCAGTTaGCCTAAGTGTTGCATCATT +
Preference number: 2 (lower is better)
Translates to: HKGAGIPHGPRSEELSLRLRNCS*PKCCII
Trigger: AATGATGCAACACTTAGGCCAACTGCAGTTTCTCAA...CCTGAGGCTCAGCTCCTCCGAGCGAGGCCCATGTGGGATCCCGGCTCCTTTATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR TCA 90 bp CGCGGCTTGGCGGGAAAGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGGAACCTCACGGGAAGTaGCCCAGATTTGACAGGTAC +
Preference number: 2 (lower is better)
Translates to: RGLAGKCIHFVCLCVYMAEPHGK*PRFDRY
Trigger: GTACCTGTCAAATCTGGGTCACTTCCCGTGAGGTTC...CGCCATGTACACACAGAGACAAACAAAATGGATGCACTTTCCCGCCAAGCCGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR TCA 90 bp GCTAACTCACTTGTAGACCAGCCTGGCCTCAGCTCCATCCACCTGGGATTAAAAGCTTGCTCATCTTGGTaGGACTCAAATGTGGGGCAC +
Preference number: 2 (lower is better)
Translates to: ANSLVDQPGLSSIHLGLKACSSW*DSNVGH
Trigger: GTGCCCCACATTTGAGTCTCACCAAGATGAGCAAGC...TTTTAATCCCAGGTGGATGGAGCTGAGGCCAGGCTGGTCTACAAGTGAGTTAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR TCA 90 bp TACCTGGGGGCTCCATGTGCGTCCTGTCGCTGCTTGGAGCTGTTACACCTATGTTCTCTTGAGCCTGAATaGGAAAGTGCTTCCACTTTG +
Preference number: 2 (lower is better)
Translates to: YLGAPCASCRCLELLHLCSLEPE*ESASTL
Trigger: CAAAGTGGAAGCACTTTCTCATTCAGGCTCAAGAGA...ACATAGGTGTAACAGCTCCAAGCAGCGACAGGACGCACATGGAGCCCCCAGGTA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CAA 90 bp GAGCTGTTACACCTATGTAGCGGCCATCAAAGTGGAGGCCCTCTCTaGAGCCTGAATGAGAAAGTGCTTCCACTTTGTGTGCCACTGCAT +
Preference number: 2 (lower is better)
Translates to: ELLHLCSGHQSGGPL*SLNEKVLPLCVPLH
Trigger: ATGCAGTGGCACACAAAGTGGAAGCACTTTCTCATTCAGGCTCAAGAGAGGGCCTCCACTTTGATGGCCGCTACATAGGTGTAACAGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR TCA 90 bp CTATGTAGCGGCCATCAAAGTGGAGGCCCTCTCTTGAGCCTGAATGAGAAAGTGGTGGGTGCTATTGAATaGACCAAGGTGCTATGGGAG +
Preference number: 2 (lower is better)
Translates to: LCSGHQSGGPLLSLNEKVVGAIE*TKVLWE
Trigger: CTCCCATAGCACCTTGGTTCATTCAATAGCACCCAC...CACTTTCTCATTCAGGCTCAAGAGAGGGCCTCCACTTTGATGGCCGCTACATAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CCA 90 bp CTATGTAGCGGCCATCAAAGTGGAGGCCCTCTCTTGAGCCTGAATGAGAAAGTGGACTTGGCCAGTAGATaGCAGTCTTGGTCCATGGAA +
Preference number: 2 (lower is better)
Translates to: LCSGHQSGGPLLSLNEKVDLASR*QSWSME
Trigger: TTCCATGGACCAAGACTGCCATCTACTGGCCAAGTC...CACTTTCTCATTCAGGCTCAAGAGAGGGCCTCCACTTTGATGGCCGCTACATAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CCA 90 bp TTTACAGGAGCGGACAACCTGTGTGGGGGTTTAGGCTTGGAGTTTAATGGGTCCCAGATGAAGGTTTCCTaGAACTGGGACATGTGGGTG +
Preference number: 2 (lower is better)
Translates to: FTGADNLCGGLGLEFNGSQMKVS*NWDMWV
Trigger: CACCCACATGTCCCAGTTCCAGGAAACCTTCATCTG...GGACCCATTAAACTCCAAGCCTAAACCCCCACACAGGTTGTCCGCTCCTGTAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR TCA 90 bp CCCATAATACCTTTTGGCTTTACAATAGCCCAGGCTCATGAGGGCTGGGATTACCAGGATGACCTTGAGTaGTCTTGTCTCCACCTCACC +
Preference number: 2 (lower is better)
Translates to: PIIPFGFTIAQAHEGWDYQDDLE*SCLHLT
Trigger: GGTGAGGTGGAGACAAGATCACTCAAGGTCATCCTG...GTAATCCCAGCCCTCATGAGCCTGGGCTATTGTAAAGCCAAAAGGTATTATGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR TCA 90 bp CAACACATAGCTGGAAGTGTTTTCAACAGTAATAGGGCACCTTTTGGGAGACACCGTGGTTGCTGGGAATaGTGTCTGCCAGGCCTCACT +
Preference number: 2 (lower is better)
Translates to: QHIAGSVFNSNRAPFGRHRGCWE*CLPGLT
Trigger: AGTGAGGCCTGGCAGACATCATTCCCAGCAACCACG...GTGTCTCCCAAAAGGTGCCCTATTACTGTTGAAAACACTTCCAGCTATGTGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR GCA 90 bp GCTAACTCACTTGTAGACCAGCCTGGCCTCAGCTCCATCCACCTGGGATTAAAACCTTGTGGGTCTTTATaGTGTGACTTGGCCAGTAGA +
Preference number: 2 (lower is better)
Translates to: ANSLVDQPGLSSIHLGLKPCGSL*CDLASR
Trigger: TCTACTGGCCAAGTCACAGCATAAAGACCCACAAGG...TTTTAATCCCAGGTGGATGGAGCTGAGGCCAGGCTGGTCTACAAGTGAGTTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR GCA 90 bp GCTAACTCACTTGTAGACCAGCCTGGCCTCAGCTCCATCCACCTGGGATTAAAACATTCACAGGTCGGCTaGTTTCATGCATGTGTAGTG +
Preference number: 2 (lower is better)
Translates to: ANSLVDQPGLSSIHLGLKHSQVG*FHACVV
Trigger: CACTACACATGCATGAAAGCAGCCGACCTGTGAATG...TTTTAATCCCAGGTGGATGGAGCTGAGGCCAGGCTGGTCTACAAGTGAGTTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR GCA 90 bp TACCTGGGGGCTCCATGTGCGTCCTGTCGCTGCTTGGAGCTGTTACACCTATGTCTTTTAAGTGGAAAGTaGTTCCCTTTTGTGTGTTGC +
Preference number: 2 (lower is better)
Translates to: YLGAPCASCRCLELLHLCLLSGK*FPFVCC
Trigger: GCAACACACAAAAGGGAAGCACTTTCCACTTAAAAG...ACATAGGTGTAACAGCTCCAAGCAGCGACAGGACGCACATGGAGCCCCCAGGTA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CCA 90 bp CGCGGCTTGGCGGGAAAGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGGAACACCACCACAGCTaGGCAAAATCTAATAACCCA +
Preference number: 2 (lower is better)
Translates to: RGLAGKCIHFVCLCVYMAEHHHS*AKSNNP
Trigger: TGGGTTATTAGATTTTGCCCAGCTGTGGTGGTGTTC...CGCCATGTACACACAGAGACAAACAAAATGGATGCACTTTCCCGCCAAGCCGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CCA 90 bp CTATGTAGCGGCCATCAAAGTGGAGGCCCTCTCTTGAGCCTGAATGAGAAAGTGTCCCATTATAAGTGGTaGAGCTACCACGTGGTTGCT +
Preference number: 2 (lower is better)
Translates to: LCSGHQSGGPLLSLNEKVSHYKW*SYHVVA
Trigger: AGCAACCACGTGGTAGCTCCACCACTTATAATGGGA...CACTTTCTCATTCAGGCTCAAGAGAGGGCCTCCACTTTGATGGCCGCTACATAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR TCA 90 bp CTATGTAGCGGCCATCAAAGTGGAGGCCCTCTCTTGAGCCTGAATGAGAAAGTGAGCTCCATCAAAGGTTaGGTGTTTAGGTCTCAAGCA +
Preference number: 2 (lower is better)
Translates to: LCSGHQSGGPLLSLNEKVSSIKG*VFRSQA
Trigger: TGCTTGAGACCTAAACACTCAACCTTTGATGGAGCT...CACTTTCTCATTCAGGCTCAAGAGAGGGCCTCCACTTTGATGGCCGCTACATAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR TCA 90 bp CCCATAATACCTTTTGGCTTTACAATAGCCCAGGCTCATGAGGGCTGGGATTACAAGTGCTACTACTTTTaGGTCTCTCCTGTGGGCACC +
Preference number: 2 (lower is better)
Translates to: PIIPFGFTIAQAHEGWDYKCYYF*VSPVGT
Trigger: GGTGCCCACAGGAGAGACTCAAAAGTAGTAGCACTT...GTAATCCCAGCCCTCATGAGCCTGGGCTATTGTAAAGCCAAAAGGTATTATGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR TCA 90 bp TTTACAGGAGCGGACAACCTGTGTGGGGGTTTAGGCTTGGAGTTTAATGGGTCCTCTAAGCCTCAGGTCTaGGTAAAGAAAGGCCTACTT +
Preference number: 2 (lower is better)
Translates to: FTGADNLCGGLGLEFNGSSKPQV*VKKGLL
Trigger: AAGTAGGCCTTTCTTTACTCAGACCTGAGGCTTAGA...GGACCCATTAAACTCCAAGCCTAAACCCCCACACAGGTTGTCCGCTCCTGTAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR GCA 90 bp CTATGTAGCGGCCATCAAAGTGGAGGCCCTCTCTTGAGCCTGAATGAGAAAGTGCCCATTACAGATGATTaGAAGCCACCATGTAGTTGC +
Preference number: 2 (lower is better)
Translates to: LCSGHQSGGPLLSLNEKVPITDD*KPPCSC
Trigger: GCAACTACATGGTGGCTTGCAATCATCTGTAATGGG...CACTTTCTCATTCAGGCTCAAGAGAGGGCCTCCACTTTGATGGCCGCTACATAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CCA 90 bp CGCGGCTTGGCGGGAAAGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGATAAAGGTAGATCTCTaGGTACTGTACTGGAAGTGG +
Preference number: 2 (lower is better)
Translates to: RGLAGKCIHFVCLCVYMAIKVDL*VLYWKW
Trigger: CCACTTCCAGTACAGTACCCAGAGATCTACCTTTAT...CGCCATGTACACACAGAGACAAACAAAATGGATGCACTTTCCCGCCAAGCCGCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CCA 90 bp CTATGTAGCGGCCATCAAAGTGGAGGCCCTCTCTTGAGCCTGAATGAGAAAGTGTGGAACTGGGACATGTaGGTGCTATTGAATGAACCA +
Preference number: 2 (lower is better)
Translates to: LCSGHQSGGPLLSLNEKVWNWDM*VLLNEP
Trigger: TGGTTCATTCAATAGCACCCACATGTCCCAGTTCCA...CACTTTCTCATTCAGGCTCAAGAGAGGGCCTCCACTTTGATGGCCGCTACATAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR GCA 90 bp GAACTTCAATCAACCAGAGACTCCTTGCTTGCTCATCTTGGTGAGACTCAAATGTATGGGAGCAACCAGTaGCCTCAGCCTCCAAACATG +
Preference number: 2 (lower is better)
Translates to: ELQSTRDSLLAHLGETQMYGSNQ*PQPPNM
Trigger: CATGTTTGGAGGCTGAGGGCACTGGTTGCTCCCATA...CATTTGAGTCTCACCAAGATGAGCAAGCAAGGAGTCTCTGGTTGATTGAAGTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR GCA 90 bp CTGGAATCGCTTACCTGCTTGAAACAGGTATGTGTGCTGGAGGTGAATTCGTTGCAACCAGAGACTCCTTaGTTGCTCATCTTGGTGAGA +
Preference number: 2 (lower is better)
Translates to: LESLTCLKQVCVLEVNSLQPETP*LLILVR
Trigger: TCTCACCAAGATGAGCAAGCAAGGAGTCTCTGGTTG...CAACGAATTCACCTCCAGCACACATACCTGTTTCAAGCAGGTAAGCGATTCCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR GCA 90 bp CTGGAATCGCTTACCTGCTTGAAACAGGTATGTGTGCTGGAGGTGAATTCGTTGTGCCGATTGAGAAACTaGAGTTGGCCTAAGTGTTGC +
Preference number: 2 (lower is better)
Translates to: LESLTCLKQVCVLEVNSLCRLRN*SWPKCC
Trigger: GCAACACTTAGGCCAACTGCAGTTTCTCAATCGGCA...CAACGAATTCACCTCCAGCACACATACCTGTTTCAAGCAGGTAAGCGATTCCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR GCA 90 bp CGCGGCTTGGCGGGAAAGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGGTTCTTTGTAAGAAGTaGCGCAGAGTTTGTAGTGTT +
Preference number: 2 (lower is better)
Translates to: RGLAGKCIHFVCLCVYMAVLCKK*RRVCSV
Trigger: AACACTACAAACTCTGCGGCACTTCTTACAAAGAAC...CGCCATGTACACACAGAGACAAACAAAATGGATGCACTTTCCCGCCAAGCCGCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR GCA 90 bp AGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGTCTGAAAAGCCGGCTGGCCTCATTTGTAAGGTaGCTTATACCTTTAGCCCCA +
Preference number: 2 (lower is better)
Translates to: SASILFVSVCTWRLKSRLASFVR*LIPLAP
Trigger: TGGGGCTAAAGGTATAAGGCACCTTACAAATGAGGC...CAGCCGGCTTTTCAGACGCCATGTACACACAGAGACAAACAAAATGGATGCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR GCA 90 bp GAACTTCAATCAACCAGAGACTCCTTGCTTGCTCATCTTGGTGAGACTCAAATGGGAGACACCCCTGTTTaGCTCTTGGGATTTAGGCAT +
Preference number: 2 (lower is better)
Translates to: ELQSTRDSLLAHLGETQMGDTPV*LLGFRH
Trigger: ATGCCTAAATCCCAAGAGGCAAACAGGGGTGTCTCC...CATTTGAGTCTCACCAAGATGAGCAAGCAAGGAGTCTCTGGTTGATTGAAGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR GCA 90 bp AGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGTCTGAAAAGCCGGCTGCTGGAATCGCTTACCTaGTTGAAACAGGTATGTGTG +
Preference number: 2 (lower is better)
Translates to: SASILFVSVCTWRLKSRLLESLT*LKQVCV
Trigger: CACACATACCTGTTTCAAGCAGGTAAGCGATTCCAG...CAGCCGGCTTTTCAGACGCCATGTACACACAGAGACAAACAAAATGGATGCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CCA 90 bp GAATTACCCTGTACTAGCTTAAAGGTGCCTTTAAGCATAGCCACATTTAAGCCCGGTGGAGCTACCACGTaGTTGCTGGGAATGATGTCT +
Preference number: 2 (lower is better)
Translates to: ELPCTSLKVPLSIATFKPGGATT*LLGMMS
Trigger: AGACATCATTCCCAGCAACCACGTGGTAGCTCCACC...GGGCTTAAATGTGGCTATGCTTAAAGGCACCTTTAAGCTAGTACAGGGTAATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CAA 90 bp CATGATTTCTGCATCCTTGGCCACCTTGCTCAGTTTTCTGGAGTGTaGAGATTCAATGCGAACACCACCACAGCTGGGCAAAATCTAATA +
Preference number: 2 (lower is better)
Translates to: HDFCILGHLAQFSGV*RFNANTTTAGQNLI
Trigger: TATTAGATTTTGCCCAGCTGTGGTGGTGTTCGCATTGAATCTCAACACTCCAGAAAACTGAGCAAGGTGGCCAAGGATGCAGAAATCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR TCA 90 bp CCCATAATACCTTTTGGCTTTACAATAGCCCAGGCTCATGAGGGCTGGGATTACTTCTGTGGTCTTTACTaGTCTTCAAACCTGCTAACC +
Preference number: 2 (lower is better)
Translates to: PIIPFGFTIAQAHEGWDYFCGLY*SSNLLT
Trigger: GGTTAGCAGGTTTGAAGATCAGTAAAGACCACAGAA...GTAATCCCAGCCCTCATGAGCCTGGGCTATTGTAAAGCCAAAAGGTATTATGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR GCA 90 bp TCAAATGTGGGGCACACTTCTGGACTGTACATAGAAAGTGCTACTACTTTTGAGCACAGCCATGATTTCTaGATCCTTGGCCACCTTGCT +
Preference number: 2 (lower is better)
Translates to: SNVGHTSGLYIESATTFEHSHDF*ILGHLA
Trigger: AGCAAGGTGGCCAAGGATGCAGAAATCATGGCTGTG...CTCAAAAGTAGTAGCACTTTCTATGTACAGTCCAGAAGTGTGCCCCACATTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR GCA 90 bp GAACTTCAATCAACCAGAGACTCCTTGCTTGCTCATCTTGGTGAGACTCAAATGAAGCCACCATGTAGTTaGTGGGAATTGAACTCAGGA +
Preference number: 2 (lower is better)
Translates to: ELQSTRDSLLAHLGETQMKPPCS*WELNSG
Trigger: TCCTGAGTTCAATTCCCAGCAACTACATGGTGGCTT...CATTTGAGTCTCACCAAGATGAGCAAGCAAGGAGTCTCTGGTTGATTGAAGTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR GCA 90 bp GAATTACCCTGTACTAGCTTAAAGGTGCCTTTAAGCATAGCCACATTTAAGCCCCATCCTTGGCCACCTTaGTCAGTTTTCTGGAGTGTT +
Preference number: 2 (lower is better)
Translates to: ELPCTSLKVPLSIATFKPHPWPP*SVFWSV
Trigger: AACACTCCAGAAAACTGAGCAAGGTGGCCAAGGATG...GGGCTTAAATGTGGCTATGCTTAAAGGCACCTTTAAGCTAGTACAGGGTAATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CCA 90 bp GAACTTCAATCAACCAGAGACTCCTTGCTTGCTCATCTTGGTGAGACTCAAATGCTTTATGCTGTGACTTaGCCAGTAGATGGCAGTCTT +
Preference number: 2 (lower is better)
Translates to: ELQSTRDSLLAHLGETQMLYAVT*PVDGSL
Trigger: AAGACTGCCATCTACTGGCCAAGTCACAGCATAAAG...CATTTGAGTCTCACCAAGATGAGCAAGCAAGGAGTCTCTGGTTGATTGAAGTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CCA 90 bp TTTACAGGAGCGGACAACCTGTGTGGGGGTTTAGGCTTGGAGTTTAATGGGTCCGATATAGGGGACTTCTaGATAGCGTTTGAATTTAAT +
Preference number: 2 (lower is better)
Translates to: FTGADNLCGGLGLEFNGSDIGDF*IAFEFN
Trigger: ATTAAATTCAAACGCTATCCAGAAGTCCCCTATATC...GGACCCATTAAACTCCAAGCCTAAACCCCCACACAGGTTGTCCGCTCCTGTAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR TCA 90 bp CTGGAATCGCTTACCTGCTTGAAACAGGTATGTGTGCTGGAGGTGAATTCGTTGAACCACTCCAGCCCTTaGGTACAATTTTTGAAAAAT +
Preference number: 2 (lower is better)
Translates to: LESLTCLKQVCVLEVNSLNHSSP*VQFLKN
Trigger: ATTTTTCAAAAATTGTACTCAAGGGCTGGAGTGGTT...CAACGAATTCACCTCCAGCACACATACCTGTTTCAAGCAGGTAAGCGATTCCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CCA 90 bp GAATTACCCTGTACTAGCTTAAAGGTGCCTTTAAGCATAGCCACATTTAAGCCCAGTAGATGGCAGTCTTaGTCCATGGAAATGTCTAGG +
Preference number: 2 (lower is better)
Translates to: ELPCTSLKVPLSIATFKPSRWQS*SMEMSR
Trigger: CCTAGACATTTCCATGGACCAAGACTGCCATCTACT...GGGCTTAAATGTGGCTATGCTTAAAGGCACCTTTAAGCTAGTACAGGGTAATTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR TCA 90 bp TCAAATGTGGGGCACACTTCTGGACTGTACATAGAAAGTGCTACTACTTTTGAGTGTGTAGTGTGTATCTaGATCCAGATGAAGGTTTCC +
Preference number: 2 (lower is better)
Translates to: SNVGHTSGLYIESATTFECVVCI*IQMKVS
Trigger: GGAAACCTTCATCTGGATTCAGATACACACTACACA...CTCAAAAGTAGTAGCACTTTCTATGTACAGTCCAGAAGTGTGCCCCACATTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CAA 90 bp AGTACAATTTTTGAAAAATTACCTTGTGGGTCTTTATGCTGTGACTaGGCCAGTAGATGGCAGTCTTGGTCCATGGAAATGTCTAGGACT +
Preference number: 2 (lower is better)
Translates to: STIFEKLPCGSLCCD*ASRWQSWSMEMSRT
Trigger: AGTCCTAGACATTTCCATGGACCAAGACTGCCATCTACTGGCCAAGTCACAGCATAAAGACCCACAAGGTAATTTTTCAAAAATTGTACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CAA 90 bp ATAATCTTCATGGATTCTCTTTGTTTTTCAGGTGTTCCAGTTGAGTaGAATGTAATCCTGCCTAGCCTGGGGTACTTACTTGCCTTCAAC +
Preference number: 2 (lower is better)
Translates to: IIFMDSLCFSGVPVE*NVILPSLGYLLAFN
Trigger: GTTGAAGGCAAGTAAGTACCCCAGGCTAGGCAGGATTACATTCAACTCAACTGGAACACCTGAAAAACAAAGAGAATCCATGAAGATTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR TCA 90 bp GAACTTCAATCAACCAGAGACTCCTTGCTTGCTCATCTTGGTGAGACTCAAATGAAAGTCTTGTTCTCTTaGTTTTGCTGCTTTCTCAGT +
Preference number: 2 (lower is better)
Translates to: ELQSTRDSLLAHLGETQMKVLFS*FCCFLS
Trigger: ACTGAGAAAGCAGCAAAATCAAGAGAACAAGACTTT...CATTTGAGTCTCACCAAGATGAGCAAGCAAGGAGTCTCTGGTTGATTGAAGTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CAA 90 bp CATAAAGGAGCCGGGATCCCACATGGGCCTCGCTCGGAGGAGCTGAGCCTCAGGTCAAGCAGAACAATTTaGTCAACCTGCACTTACTGG +
Preference number: 3 (lower is better)
Translates to: HKGAGIPHGPRSEELSLRSSRTI*STCTYW
Trigger: CCAGTAAGTGCAGGTTGACAAAATTGTTCTGCTTGA...CCTGAGGCTCAGCTCCTCCGAGCGAGGCCCATGTGGGATCCCGGCTCCTTTATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CAA 90 bp TACCTGGGGGCTCCATGTGCGTCCTGTCGCTGCTTGGAGCTGTTACACCTATGTGCATCCTTGGCCACCTaGCTCAGTTTTCTGGAGTGT +
Preference number: 3 (lower is better)
Translates to: YLGAPCASCRCLELLHLCASLAT*LSFLEC
Trigger: ACACTCCAGAAAACTGAGCAAGGTGGCCAAGGATGC...ACATAGGTGTAACAGCTCCAAGCAGCGACAGGACGCACATGGAGCCCCCAGGTA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR GCA 72 bp CAAAGTGGAGGCCCTCTCCGCGGCTTGGCGGGAAAGTaGATCCATTTTGTTTGTCTCTGTGTGTACATGGCG +
Preference number: 3 (lower is better)
Translates to: QSGGPLRGLAGK*IHFVCLCVYMA
Trigger: CGCCATGTACACACAGAGACAAACAAAATGGATGCACTTTCCCGCCAAGCCGCGGAGAGGGCCTCCACTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CAA 90 bp CGCGGCTTGGCGGGAAAGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGACCCCTGTTTGCCTCTaGGGATTTAGGCATGCCACC +
Preference number: 3 (lower is better)
Translates to: RGLAGKCIHFVCLCVYMATPVCL*GFRHAT
Trigger: GGTGGCATGCCTAAATCCCAAGAGGCAAACAGGGGT...CGCCATGTACACACAGAGACAAACAAAATGGATGCACTTTCCCGCCAAGCCGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR TCA 72 bp CGGCCATCAAAGTGGAGGCCCTCTCTTGAGCCTGAATaGGAAAGTGCTTCCACTTTGTGTGCCACTGCATGG +
Preference number: 3 (lower is better)
Translates to: RPSKWRPSLEPE*ESASTLCATAW
Trigger: CCATGCAGTGGCACACAAAGTGGAAGCACTTTCTCATTCAGGCTCAAGAGAGGGCCTCCACTTTGATGGCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CCA 72 bp AGGTGGGTGTCACATGTGGGTTTGAGTCCGAACACTTaGGCGCATGCGGTACTAAAGGCTTTCCGCGTTCAT +
Preference number: 3 (lower is better)
Translates to: RWVSHVGLSPNT*AHAVLKAFRVH
Trigger: ATGAACGCGGAAAGCCTTTAGTACCGCATGCGCCCAAGTGTTCGGACTCAAACCCACATGTGACACCCACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CAA 90 bp TTTACAGGAGCGGACAACCTGTGTGGGGGTTTAGGCTTGGAGTTTAATGGGTCCTTAAAAAGTAGTGGGTaGGGGAGCAGGGTGTGGGGG +
Preference number: 3 (lower is better)
Translates to: FTGADNLCGGLGLEFNGSLKSSG*GSRVWG
Trigger: CCCCCACACCCTGCTCCCCAACCCACTACTTTTTAA...GGACCCATTAAACTCCAAGCCTAAACCCCCACACAGGTTGTCCGCTCCTGTAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CAA 90 bp CATAAAGGAGCCGGGATCCCACATGGGCCTCGCTCGGAGGAGCTGAGCCTCAGGCTTGTTCTCTTGATTTaGCTGCTTTCTCAGTTTTTG +
Preference number: 3 (lower is better)
Translates to: HKGAGIPHGPRSEELSLRLVLLI*LLSQFL
Trigger: CAAAAACTGAGAAAGCAGCAAAATCAAGAGAACAAG...CCTGAGGCTCAGCTCCTCCGAGCGAGGCCCATGTGGGATCCCGGCTCCTTTATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CAA 90 bp TACCTGGGGGCTCCATGTGCGTCCTGTCGCTGCTTGGAGCTGTTACACCTATGTGGTGTTCCAGTTGAGTaGAATGTAATCCTGCCTAGC +
Preference number: 3 (lower is better)
Translates to: YLGAPCASCRCLELLHLCGVPVE*NVILPS
Trigger: GCTAGGCAGGATTACATTCAACTCAACTGGAACACC...ACATAGGTGTAACAGCTCCAAGCAGCGACAGGACGCACATGGAGCCCCCAGGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR GCA 72 bp AACTGGGACATGTGGGTGCTATTGAATGAACCAAGGTaGTATGGGAGCAACCAGTGCCCTCAGCCTCCAAAC +
Preference number: 3 (lower is better)
Translates to: NWDMWVLLNEPR*YGSNQCPQPPN
Trigger: GTTTGGAGGCTGAGGGCACTGGTTGCTCCCATAGCACCTTGGTTCATTCAATAGCACCCACATGTCCCAGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR GCA 72 bp AAAGCCGGCTGCAGCTGCAACCTGGAATCGCTTACCTaGTTGAAACAGGTATGTGTGCTGGAGGTGAATTCG +
Preference number: 3 (lower is better)
Translates to: KAGCSCNLESLT*LKQVCVLEVNS
Trigger: CGAATTCACCTCCAGCACACATACCTGTTTCAAGCAGGTAAGCGATTCCAGGTTGCAGCTGCAGCCGGCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CAA 90 bp GCTAACTCACTTGTAGACCAGCCTGGCCTCAGCTCCATCCACCTGGGATTAAAAGTAATAGGGCACCTTTaGGGAGACACCCCTGTTTGC +
Preference number: 3 (lower is better)
Translates to: ANSLVDQPGLSSIHLGLKVIGHL*GDTPVC
Trigger: GCAAACAGGGGTGTCTCCCAAAAGGTGCCCTATTAC...TTTTAATCCCAGGTGGATGGAGCTGAGGCCAGGCTGGTCTACAAGTGAGTTAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CAA 90 bp TTTACAGGAGCGGACAACCTGTGTGGGGGTTTAGGCTTGGAGTTTAATGGGTCCGATAGGATGGGAGCATaGGCTGTCAACTATACCAGG +
Preference number: 3 (lower is better)
Translates to: FTGADNLCGGLGLEFNGSDRMGA*AVNYTR
Trigger: CCTGGTATAGTTGACAGCCAATGCTCCCATCCTATC...GGACCCATTAAACTCCAAGCCTAAACCCCCACACAGGTTGTCCGCTCCTGTAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CAA 90 bp TTTACAGGAGCGGACAACCTGTGTGGGGGTTTAGGCTTGGAGTTTAATGGGTCCTCTTTATGCTGTGACTaGGCCAGTAGATGGCAGTCT +
Preference number: 3 (lower is better)
Translates to: FTGADNLCGGLGLEFNGSSLCCD*ASRWQS
Trigger: AGACTGCCATCTACTGGCCAAGTCACAGCATAAAGA...GGACCCATTAAACTCCAAGCCTAAACCCCCACACAGGTTGTCCGCTCCTGTAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CAA 90 bp AGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGTCTGAAAAGCCGGCTGCCAGAGACTCCTTGCTaGCTCATCTTGGTGAGACTC +
Preference number: 3 (lower is better)
Translates to: SASILFVSVCTWRLKSRLPETPC*LILVRL
Trigger: GAGTCTCACCAAGATGAGCAAGCAAGGAGTCTCTGG...CAGCCGGCTTTTCAGACGCCATGTACACACAGAGACAAACAAAATGGATGCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CAA 90 bp CTATGTAGCGGCCATCAAAGTGGAGGCCCTCTCTTGAGCCTGAATGAGAAAGTGGAATCGCTTACCTGCTaGAAACAGGTATGTGTGCTG +
Preference number: 3 (lower is better)
Translates to: LCSGHQSGGPLLSLNEKVESLTC*KQVCVL
Trigger: CAGCACACATACCTGTTTCAAGCAGGTAAGCGATTC...CACTTTCTCATTCAGGCTCAAGAGAGGGCCTCCACTTTGATGGCCGCTACATAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR TCA 72 bp TCCAGGTCCAGGGGTGGTGAGTCTAAGCCTCAGGTCTaGGTAAAGAAAGGCCTACTTTTAAATCTCACGTGG +
Preference number: 3 (lower is better)
Translates to: SRSRGGESKPQV*VKKGLLLNLTW
Trigger: CCACGTGAGATTTAAAAGTAGGCCTTTCTTTACTCAGACCTGAGGCTTAGACTCACCACCCCTGGACCTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR TCA 72 bp CATCCATTTTGTTTGTCTCTGTGTGTACATGGCGTCTaGAAAGCCGGCTGCAGCTGCAACCTGGAATCGCTT +
Preference number: 3 (lower is better)
Translates to: HPFCLSLCVHGV*KAGCSCNLESL
Trigger: AAGCGATTCCAGGTTGCAGCTGCAGCCGGCTTTTCAGACGCCATGTACACACAGAGACAAACAAAATGGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR GCA 72 bp CTCCTGTGGGCACCATTCACAGGTCGGCTGCTTTCATaGATGTGTAGTGTGTATCTGAATCCAGATGAAGGT +
Preference number: 3 (lower is better)
Translates to: LLWAPFTGRLLS*MCSVYLNPDEG
Trigger: ACCTTCATCTGGATTCAGATACACACTACACATGCATGAAAGCAGCCGACCTGTGAATGGTGCCCACAGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CCA 72 bp ACATCATGGCCAGTTCCTTTTAGTGGAGTGTCTGGATaGTTACAAGCTAACCTGAAATGGGGTGGTGCCAGG +
Preference number: 3 (lower is better)
Translates to: TSWPVPFSGVSG*LQANLKWGGAR
Trigger: CCTGGCACCACCCCATTTCAGGTTAGCTTGTAACCATCCAGACACTCCACTAAAAGGAACTGGCCATGATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CCA 72 bp AGCCTGGGGTACTTACTTGCCTTCAACCTGCCTGGCTaGCTGGTCTGGCTAAGAACTGACTATAAAGTTTCA +
Preference number: 3 (lower is better)
Translates to: SLGYLLAFNLPG*LVWLRTDYKVS
Trigger: TGAAACTTTATAGTCAGTTCTTAGCCAGACCAGCCAGCCAGGCAGGTTGAAGGCAAGTAAGTACCCCAGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR TCA 72 bp AGAACAATTTTGTCAACCTGCACTTACTGGGCCTCCTaGCCTAAGACGGTCCCATGTAACAGGATGACCTTG +
Preference number: 3 (lower is better)
Translates to: RTILSTCTYWAS*PKTVPCNRMTL
Trigger: CAAGGTCATCCTGTTACATGGGACCGTCTTAGGTCAGGAGGCCCAGTAAGTGCAGGTTGACAAAATTGTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR TCA 72 bp CACTTCTGGACTGTACATAGAAAGTGCTACTACTTTTaGGTCTCTCCTGTGGGCACCATTCACAGGTCGGCT +
Preference number: 3 (lower is better)
Translates to: HFWTVHRKCYYF*VSPVGTIHRSA
Trigger: AGCCGACCTGTGAATGGTGCCCACAGGAGAGACTCAAAAGTAGTAGCACTTTCTATGTACAGTCCAGAAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CCA 72 bp CCTTTTGGCTTTACAATAGCCCAGGCTCATGAGGGCTaGGATTACAGGTGTTACATTGTGTGCCCTAAGCAT +
Preference number: 3 (lower is better)
Translates to: PFGFTIAQAHEG*DYRCYIVCPKH
Trigger: ATGCTTAGGGCACACAATGTAACACCTGTAATCCCAGCCCTCATGAGCCTGGGCTATTGTAAAGCCAAAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CAA 90 bp CCCATAATACCTTTTGGCTTTACAATAGCCCAGGCTCATGAGGGCTGGGATTACCCAGGTGTGCAAATCTaGGGTTTTGAGGCCTCATTT +
Preference number: 3 (lower is better)
Translates to: PIIPFGFTIAQAHEGWDYPGVQI*GFEASF
Trigger: AAATGAGGCCTCAAAACCCAAGATTTGCACACCTGG...GTAATCCCAGCCCTCATGAGCCTGGGCTATTGTAAAGCCAAAAGGTATTATGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CAA 90 bp CTATGTAGCGGCCATCAAAGTGGAGGCCCTCTCTTGAGCCTGAATGAGAAAGTGGTTGCTATATCTTGCTaGACTACTGTAGTTGGACTG +
Preference number: 3 (lower is better)
Translates to: LCSGHQSGGPLLSLNEKVVAISC*TTVVGL
Trigger: CAGTCCAACTACAGTAGTCAAGCAAGATATAGCAAC...CACTTTCTCATTCAGGCTCAAGAGAGGGCCTCCACTTTGATGGCCGCTACATAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CAA 90 bp CTATGTAGCGGCCATCAAAGTGGAGGCCCTCTCTTGAGCCTGAATGAGAAAGTGGAAAACATCATAGCTTaGCATCTGACGCATCGGTTT +
Preference number: 3 (lower is better)
Translates to: LCSGHQSGGPLLSLNEKVENIIA*HLTHRF
Trigger: AAACCGATGCGTCAGATGCAAAGCTATGATGTTTTC...CACTTTCTCATTCAGGCTCAAGAGAGGGCCTCCACTTTGATGGCCGCTACATAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CAA 90 bp CTGGAATCGCTTACCTGCTTGAAACAGGTATGTGTGCTGGAGGTGAATTCGTTGCACCCAAAGAAGGCATaGGATCCCATTACAGATGAT +
Preference number: 3 (lower is better)
Translates to: LESLTCLKQVCVLEVNSLHPKKA*DPITDD
Trigger: ATCATCTGTAATGGGATCCAATGCCTTCTTTGGGTG...CAACGAATTCACCTCCAGCACACATACCTGTTTCAAGCAGGTAAGCGATTCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR GCA 72 bp AGAAAGCATCGGAACTTCAATCAACCAGAGACTCCTTaGTTGCTCATCTTGGTGAGACTCAAATGTGGGGCA +
Preference number: 3 (lower is better)
Translates to: RKHRNFNQPETP*LLILVRLKCGA
Trigger: TGCCCCACATTTGAGTCTCACCAAGATGAGCAAGCAAGGAGTCTCTGGTTGATTGAAGTTCCGATGCTTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CAA 90 bp TTTACAGGAGCGGACAACCTGTGTGGGGGTTTAGGCTTGGAGTTTAATGGGTCCAAACTGTGTGACATTTaGTTCTTTGTAAGAAGTGCC +
Preference number: 3 (lower is better)
Translates to: FTGADNLCGGLGLEFNGSKLCDI*FFVRSA
Trigger: GGCACTTCTTACAAAGAACAAAATGTCACACAGTTT...GGACCCATTAAACTCCAAGCCTAAACCCCCACACAGGTTGTCCGCTCCTGTAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR GCA 72 bp CACCCAAAGAAGGCATTGGATCCCATTACAGATGATTaGAAGCCACCATGTAGTTGCTGGGAATTGAACTCA +
Preference number: 3 (lower is better)
Translates to: HPKKALDPITDD*KPPCSCWELNS
Trigger: TGAGTTCAATTCCCAGCAACTACATGGTGGCTTGCAATCATCTGTAATGGGATCCAATGCCTTCTTTGGGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CCA 72 bp GCTGTGACTTGGCCAGTAGATGGCAGTCTTGGTCCATaGAAATGTCTAGGACTCTGGATATTTTTCCTTTTC +
Preference number: 3 (lower is better)
Translates to: AVTWPVDGSLGP*KCLGLWIFFLF
Trigger: GAAAAGGAAAAATATCCAGAGTCCTAGACATTTCCATGGACCAAGACTGCCATCTACTGGCCAAGTCACAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CAA 90 bp TCAAATGTGGGGCACACTTCTGGACTGTACATAGAAAGTGCTACTACTTTTGAGTGTAACAGGATGACCTaGAGTGATCTTGTCTCCACC +
Preference number: 3 (lower is better)
Translates to: SNVGHTSGLYIESATTFECNRMT*SDLVST
Trigger: GGTGGAGACAAGATCACTCAAGGTCATCCTGTTACA...CTCAAAAGTAGTAGCACTTTCTATGTACAGTCCAGAAGTGTGCCCCACATTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR TCA 72 bp GCTGTCAACTATACCAGGTGTGCAAATCTTGGGTTTTaGGGCCTCATTTGTAAGGTGCCTTATACCTTTAGC +
Preference number: 3 (lower is better)
Translates to: AVNYTRCANLGF*GLICKVPYTFS
Trigger: GCTAAAGGTATAAGGCACCTTACAAATGAGGCCTCAAAACCCAAGATTTGCACACCTGGTATAGTTGACAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR TCA 72 bp TGTAAGAAGTGCCGCAGAGTTTGTAGTGTTGCCGATTaGGAAACTGCAGTTGGCCTAAGTGTTGCATCATTT +
Preference number: 3 (lower is better)
Translates to: CKKCRRVCSVAD*ETAVGLSVASF
Trigger: AAATGATGCAACACTTAGGCCAACTGCAGTTTCTCAATCGGCAACACTACAAACTCTGCGGCACTTCTTACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR GCA 72 bp CTATTGAATGAACCAAGGTGCTATGGGAGCAACCAGTaGCCTCAGCCTCCAAACATGAATAATAAAGTCTTG +
Preference number: 3 (lower is better)
Translates to: LLNEPRCYGSNQ*PQPPNMNNKVL
Trigger: CAAGACTTTATTATTCATGTTTGGAGGCTGAGGGCACTGGTTGCTCCCATAGCACCTTGGTTCATTCAATAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CCA 72 bp ATAATAAAGGTAGATCTCTGGGTACTGTACTGGAAGTaGGCGGAGTTATCCCATTATAAGTGGTGGAGCTAC +
Preference number: 3 (lower is better)
Translates to: IIKVDLWVLYWK*AELSHYKWWSY
Trigger: GTAGCTCCACCACTTATAATGGGATAACTCCGCCCACTTCCAGTACAGTACCCAGAGATCTACCTTTATTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CAA 90 bp GAATTACCCTGTACTAGCTTAAAGGTGCCTTTAAGCATAGCCACATTTAAGCCCATGATTTCTGCATCCTaGGCCACCTTGCTCAGTTTT +
Preference number: 3 (lower is better)
Translates to: ELPCTSLKVPLSIATFKPMISAS*ATLLSF
Trigger: AAAACTGAGCAAGGTGGCCAAGGATGCAGAAATCAT...GGGCTTAAATGTGGCTATGCTTAAAGGCACCTTTAAGCTAGTACAGGGTAATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR-3UTR CAA 90 bp AGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGTCTGAAAAGCCGGCTGAAGATCCTATATATCTaGCTTGACTACTGTAGTTGC +
Preference number: 3 (lower is better)
Translates to: SASILFVSVCTWRLKSRLKILYI*LDYCSC
Trigger: GCAACTACAGTAGTCAAGCAAGATATATAGGATCTT...CAGCCGGCTTTTCAGACGCCATGTACACACAGAGACAAACAAAATGGATGCACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR GCA 72 bp AAGCTTTTAAGTGGAAAGTGCTTCCCTTTTGTGTGTTaGCATGTGGAGAAAGCATCGGAACTTCAATCAACC +
Preference number: 3 (lower is better)
Translates to: KLLSGKCFPFVC*HVEKASELQST
Trigger: GGTTGATTGAAGTTCCGATGCTTTCTCCACATGGCAACACACAAAAGGGAAGCACTTTCCACTTAAAAGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR GCA 72 bp GCTCATGAGGGCTGGGATTACAGGTGTTACATTGTGTaGCCTAAGCATAATCTTCATGGATTCTCTTTGTTT +
Preference number: 3 (lower is better)
Translates to: AHEGWDYRCYIV*PKHNLHGFSLF
Trigger: AAACAAAGAGAATCCATGAAGATTATGCTTAGGGCACACAATGTAACACCTGTAATCCCAGCCCTCATGAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CCA 72 bp TACTTACTTGCCTTCAACCTGCCTGGCTGGCTGGTCTaGCTAAGAACTGACTATAAAGTTTCAGGTTTATTA +
Preference number: 3 (lower is better)
Translates to: YLLAFNLPGWLV*LRTDYKVSGLL
Trigger: TAATAAACCTGAAACTTTATAGTCAGTTCTTAGCCAGACCAGCCAGCCAGGCAGGTTGAAGGCAAGTAAGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR GCA 72 bp AGTACAATTTTTGAAAAATTACCTTGTGGGTCTTTATaGTGTGACTTGGCCAGTAGATGGCAGTCTTGGTCC +
Preference number: 3 (lower is better)
Translates to: STIFEKLPCGSL*CDLASRWQSWS
Trigger: GGACCAAGACTGCCATCTACTGGCCAAGTCACAGCATAAAGACCCACAAGGTAATTTTTCAAAAATTGTACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR GCA 72 bp TTTCAGGTTTATTACCACAGCAGGTCCCTGTGGAAATaGTTCAATCTGTGGTACTCAAACTGTGTGACATTT +
Preference number: 3 (lower is better)
Translates to: FQVYYHSRSLWK*FNLWYSNCVTF
Trigger: AAATGTCACACAGTTTGAGTACCACAGATTGAAGCATTTCCACAGGGACCTGCTGTGGTAATAAACCTGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CCA 72 bp ATAAAGTTTCAGGTTTATTACCACAGCAGGTCCCTGTaGAAATGCTTCAATCTGTGGTACTCAAACTGTGTG +
Preference number: 3 (lower is better)
Translates to: IKFQVYYHSRSL*KCFNLWYSNCV
Trigger: CACACAGTTTGAGTACCACAGATTGAAGCATTTCCACAGGGACCTGCTGTGGTAATAAACCTGAAACTTTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR TCA 72 bp GAATCTACATCAAACCCAGTGAGCTCCATCAAAGGTTaGGTGTTTAGGTCTCAAGCAGAACAATTTTGTCAA +
Preference number: 3 (lower is better)
Translates to: ESTSNPVSSIKG*VFRSQAEQFCQ
Trigger: TTGACAAAATTGTTCTGCTTGAGACCTAAACACTCAACCTTTGATGGAGCTCACTGGGTTTGATGTAGATTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CCA 72 bp TTTAATATAATAAAGGTAGATCTCTGGGTACTGTACTaGAAGTGGGCGGAGTTATCCCATTATAAGTGGTGG +
Preference number: 3 (lower is better)
Translates to: FNIIKVDLWVLY*KWAELSHYKWW
Trigger: CCACCACTTATAATGGGATAACTCCGCCCACTTCCAGTACAGTACCCAGAGATCTACCTTTATTATATTAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CCA 72 bp ATAGCGTTTGAATTTAATATAATAAAGGTAGATCTCTaGGTACTGTACTGGAAGTGGGCGGAGTTATCCCAT +
Preference number: 3 (lower is better)
Translates to: IAFEFNIIKVDL*VLYWKWAELSH
Trigger: ATGGGATAACTCCGCCCACTTCCAGTACAGTACCCAGAGATCTACCTTTATTATATTAAATTCAAACGCTAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CCA 72 bp TTATATACTGTGAGTCTTTTCCATTTCTATACATCATaGCCAGTTCCTTTTAGTGGAGTGTCTGGATGGTTA +
Preference number: 3 (lower is better)
Translates to: LYTVSLFHFYTS*PVPFSGVSGWL
Trigger: TAACCATCCAGACACTCCACTAAAAGGAACTGGCCATGATGTATAGAAATGGAAAAGACTCACAGTATATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR GCA 90 bp CATAAAGGAGCCGGGATCCCACATGGGCCTCGCTCGGAGGAGCTGAGCCTCAGGCTACACCTGGGGTGCTaGAGCCCCTCACAGAGCAGC +
Preference number: 4 (lower is better)
Translates to: HKGAGIPHGPRSEELSLRLHLGC*SPSQSS
Trigger: GCTGCTCTGTGAGGGGCTGCAGCACCCCAGGTGTAG...CCTGAGGCTCAGCTCCTCCGAGCGAGGCCCATGTGGGATCCCGGCTCCTTTATG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR TCA 90 bp TACCTGGGGGCTCCATGTGCGTCCTGTCGCTGCTTGGAGCTGTTACACCTATGTTGGGCCACCATCAGCTaGGCCATTTCCAGAGGACCA +
Preference number: 4 (lower is better)
Translates to: YLGAPCASCRCLELLHLCWATIS*AISRGP
Trigger: TGGTCCTCTGGAAATGGCTCAGCTGATGGTGGCCCA...ACATAGGTGTAACAGCTCCAAGCAGCGACAGGACGCACATGGAGCCCCCAGGTA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR GCA 90 bp CGCGGCTTGGCGGGAAAGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGAGCCTACACCTGGGGTaGTGCAGCCCCTCACAGAGC +
Preference number: 4 (lower is better)
Translates to: RGLAGKCIHFVCLCVYMASLHLG*CSPSQS
Trigger: GCTCTGTGAGGGGCTGCAGCACCCCAGGTGTAGGCT...CGCCATGTACACACAGAGACAAACAAAATGGATGCACTTTCCCGCCAAGCCGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR TCA 90 bp TACCTGGGGGCTCCATGTGCGTCCTGTCGCTGCTTGGAGCTGTTACACCTATGTATAGGACTAGTCTGGTaGCGCCTGGTTCTGGAGCGT +
Preference number: 4 (lower is better)
Translates to: YLGAPCASCRCLELLHLCIGLVW*RLVLER
Trigger: ACGCTCCAGAACCAGGCGTCACCAGACTAGTCCTAT...ACATAGGTGTAACAGCTCCAAGCAGCGACAGGACGCACATGGAGCCCCCAGGTA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CCA 90 bp TACCTGGGGGCTCCATGTGCGTCCTGTCGCTGCTTGGAGCTGTTACACCTATGTTGGGACTTTGAAGGTTaGAGTCCCTGGCTTGGGCTG +
Preference number: 4 (lower is better)
Translates to: YLGAPCASCRCLELLHLCWDFEG*SPWLGL
Trigger: CAGCCCAAGCCAGGGACTCCAACCTTCAAAGTCCCA...ACATAGGTGTAACAGCTCCAAGCAGCGACAGGACGCACATGGAGCCCCCAGGTA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CAA 72 bp CCTCGCTCGGAGGAGCTGAGCCTCAGGTCTTGGAAGTaGGAACATACAGTGTCGATCAAAGTGGAGGCCCTC +
Preference number: 4 (lower is better)
Translates to: PRSEELSLRSWK*EHTVSIKVEAL
Trigger: GAGGGCCTCCACTTTGATCGACACTGTATGTTCCAACTTCCAAGACCTGAGGCTCAGCTCCTCCGAGCGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR TCA 90 bp GCTAACTCACTTGTAGACCAGCCTGGCCTCAGCTCCATCCACCTGGGATTAAAAACTTCCTCCTTCACCTaGGGGGAGATGCTCCAGCCG +
Preference number: 4 (lower is better)
Translates to: ANSLVDQPGLSSIHLGLKTSSFT*GEMLQP
Trigger: CGGCTGGAGCATCTCCCCTCAGGTGAAGGAGGAAGT...TTTTAATCCCAGGTGGATGGAGCTGAGGCCAGGCTGGTCTACAAGTGAGTTAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR TCA 90 bp TTTACAGGAGCGGACAACCTGTGTGGGGGTTTAGGCTTGGAGTTTAATGGGTCCTCAGGGCCTGCTGGATaGAGTCCTCCTCCTGGACCT +
Preference number: 4 (lower is better)
Translates to: FTGADNLCGGLGLEFNGSSGPAG*SPPPGP
Trigger: AGGTCCAGGAGGAGGACTTCATCCAGCAGGCCCTGA...GGACCCATTAAACTCCAAGCCTAAACCCCCACACAGGTTGTCCGCTCCTGTAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR TCA 90 bp CTATGTAGCGGCCATCAAAGTGGAGGCCCTCTCTTGAGCCTGAATGAGAAAGTGGAGGTCCTGGCAGGCTaGTCCGGAGATCTGACACCT +
Preference number: 4 (lower is better)
Translates to: LCSGHQSGGPLLSLNEKVEVLAG*SGDLTP
Trigger: AGGTGTCAGATCTCCGGATCAGCCTGCCAGGACCTC...CACTTTCTCATTCAGGCTCAAGAGAGGGCCTCCACTTTGATGGCCGCTACATAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR TCA 90 bp CGCGGCTTGGCGGGAAAGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGCTTGGAGGCATGTGTTaGCCTGGAGCACACTGGCGA +
Preference number: 4 (lower is better)
Translates to: RGLAGKCIHFVCLCVYMALGGMC*PGAHWR
Trigger: TCGCCAGTGTGCTCCAGGTCAACACATGCCTCCAAG...CGCCATGTACACACAGAGACAAACAAAATGGATGCACTTTCCCGCCAAGCCGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR GCA 90 bp CGCGGCTTGGCGGGAAAGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGCCCAGGATCTCCACGTaGCTGGGGTGTTCTAGCAAG +
Preference number: 4 (lower is better)
Translates to: RGLAGKCIHFVCLCVYMAPRIST*LGCSSK
Trigger: CTTGCTAGAACACCCCAGGCACGTGGAGATCCTGGG...CGCCATGTACACACAGAGACAAACAAAATGGATGCACTTTCCCGCCAAGCCGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR GCA 90 bp CCCATAATACCTTTTGGCTTTACAATAGCCCAGGCTCATGAGGGCTGGGATTACCCTTCCCCCAGCAGCTaGAGGCCCCTGTCTCCCAAG +
Preference number: 4 (lower is better)
Translates to: PIIPFGFTIAQAHEGWDYPSPSS*RPLSPK
Trigger: CTTGGGAGACAGGGGCCTGCAGCTGCTGGGGGAAGG...GTAATCCCAGCCCTCATGAGCCTGGGCTATTGTAAAGCCAAAAGGTATTATGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR GCA 90 bp CGCGGCTTGGCGGGAAAGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGACAGCTTCTGGAGTCTaGAGGTCTGGTGCCTCAGGC +
Preference number: 4 (lower is better)
Translates to: RGLAGKCIHFVCLCVYMATASGV*RSGASG
Trigger: GCCTGAGGCACCAGACCTGCAGACTCCAGAAGCTGT...CGCCATGTACACACAGAGACAAACAAAATGGATGCACTTTCCCGCCAAGCCGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR TCA 90 bp CGCGGCTTGGCGGGAAAGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGCTGACTACAACCACTTaGAAGTGGCTCAGGGCCTGC +
Preference number: 4 (lower is better)
Translates to: RGLAGKCIHFVCLCVYMALTTTT*KWLRAC
Trigger: GCAGGCCCTGAGCCACTTTCAAGTGGTTGTAGTCAG...CGCCATGTACACACAGAGACAAACAAAATGGATGCACTTTCCCGCCAAGCCGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CCA 90 bp CGCGGCTTGGCGGGAAAGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGGGGGCGTTCTTCGTCTaGCTCAAAGAGGGTCTCCAT +
Preference number: 4 (lower is better)
Translates to: RGLAGKCIHFVCLCVYMAGAFFV*LKEGLH
Trigger: ATGGAGACCCTCTTTGAGCCAGACGAAGAACGCCCC...CGCCATGTACACACAGAGACAAACAAAATGGATGCACTTTCCCGCCAAGCCGCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CCA 90 bp CGCGGCTTGGCGGGAAAGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGATGAGCAGAGAGACCTaGGGCAGAAGCAACCTCCGA +
Preference number: 4 (lower is better)
Translates to: RGLAGKCIHFVCLCVYMAMSRET*GRSNLR
Trigger: TCGGAGGTTGCTTCTGCCCCAGGTCTCTCTGCTCAT...CGCCATGTACACACAGAGACAAACAAAATGGATGCACTTTCCCGCCAAGCCGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CCA 90 bp CCCATAATACCTTTTGGCTTTACAATAGCCCAGGCTCATGAGGGCTGGGATTACTGGAGTCTGCAGGTCTaGTGCCTCAGGCCTTCCCCC +
Preference number: 4 (lower is better)
Translates to: PIIPFGFTIAQAHEGWDYWSLQV*CLRPSP
Trigger: GGGGGAAGGCCTGAGGCACCAGACCTGCAGACTCCA...GTAATCCCAGCCCTCATGAGCCTGGGCTATTGTAAAGCCAAAAGGTATTATGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CCA 90 bp CTATGTAGCGGCCATCAAAGTGGAGGCCCTCTCTTGAGCCTGAATGAGAAAGTGTCCAGCCACAGCTTCTaGAGTCTGCAGGTCTGGTGC +
Preference number: 4 (lower is better)
Translates to: LCSGHQSGGPLLSLNEKVSSHSF*SLQVWC
Trigger: GCACCAGACCTGCAGACTCCAGAAGCTGTGGCTGGA...CACTTTCTCATTCAGGCTCAAGAGAGGGCCTCCACTTTGATGGCCGCTACATAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CAA 72 bp TGCTTGAAACAGGTATGTGTGCTGGAGGTGAATTCGTaGCCACTGGCTACTCGAGCTGCAAGGCTGGAGGTG +
Preference number: 4 (lower is better)
Translates to: CLKQVCVLEVNS*PLATRAARLEV
Trigger: CACCTCCAGCCTTGCAGCTCGAGTAGCCAGTGGCAACGAATTCACCTCCAGCACACATACCTGTTTCAAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CAA 72 bp ACATGGGCCTCGCTCGGAGGAGCTGAGCCTCAGGTCTaGGAAGTTGGAACATACAGTGTCGATCAAAGTGGA +
Preference number: 4 (lower is better)
Translates to: TWASLGGAEPQV*EVGTYSVDQSG
Trigger: TCCACTTTGATCGACACTGTATGTTCCAACTTCCAAGACCTGAGGCTCAGCTCCTCCGAGCGAGGCCCATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR TCA 90 bp TTTACAGGAGCGGACAACCTGTGTGGGGGTTTAGGCTTGGAGTTTAATGGGTCCAGGCACCAGGGACCCTaGGCATCATGGAAAGAAGGA +
Preference number: 4 (lower is better)
Translates to: FTGADNLCGGLGLEFNGSRHQGP*ASWKEG
Trigger: TCCTTCTTTCCATGATGCTCAGGGTCCCTGGTGCCT...GGACCCATTAAACTCCAAGCCTAAACCCCCACACAGGTTGTCCGCTCCTGTAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR GCA 90 bp GCTAACTCACTTGTAGACCAGCCTGGCCTCAGCTCCATCCACCTGGGATTAAAAGATGCCTCAGCCTCTTaGACAGCAGACAGACACCTG +
Preference number: 4 (lower is better)
Translates to: ANSLVDQPGLSSIHLGLKDASAS*TADRHL
Trigger: CAGGTGTCTGTCTGCTGTGCAAGAGGCTGAGGCATC...TTTTAATCCCAGGTGGATGGAGCTGAGGCCAGGCTGGTCTACAAGTGAGTTAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CCA 90 bp CGCGGCTTGGCGGGAAAGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGTCCAACATCACTTTGTaGGCCAGCATGGACTTCCCC +
Preference number: 4 (lower is better)
Translates to: RGLAGKCIHFVCLCVYMASNITL*ASMDFP
Trigger: GGGGAAGTCCATGCTGGCCCACAAAGTGATGTTGGA...CGCCATGTACACACAGAGACAAACAAAATGGATGCACTTTCCCGCCAAGCCGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CCA 90 bp CTGGAATCGCTTACCTGCTTGAAACAGGTATGTGTGCTGGAGGTGAATTCGTTGAGCCATGCTGCAGGGTaGAGCCTTCACTCCCAGCCT +
Preference number: 4 (lower is better)
Translates to: LESLTCLKQVCVLEVNSLSHAAG*SLHSQP
Trigger: AGGCTGGGAGTGAAGGCTCCACCCTGCAGCATGGCT...CAACGAATTCACCTCCAGCACACATACCTGTTTCAAGCAGGTAAGCGATTCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CCA 90 bp AGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGTCTGAAAAGCCGGCTGTGGCTCAGGGCCTGCTaGATGAAGTCCTCCTCCTGG +
Preference number: 4 (lower is better)
Translates to: SASILFVSVCTWRLKSRLWLRAC*MKSSSW
Trigger: CCAGGAGGAGGACTTCATCCAGCAGGCCCTGAGCCA...CAGCCGGCTTTTCAGACGCCATGTACACACAGAGACAAACAAAATGGATGCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CCA 90 bp GCTAACTCACTTGTAGACCAGCCTGGCCTCAGCTCCATCCACCTGGGATTAAAACTCAGGTCCAGCTCTTaGAGGCATGTGTTGACCTGG +
Preference number: 4 (lower is better)
Translates to: ANSLVDQPGLSSIHLGLKLRSSS*RHVLTW
Trigger: CCAGGTCAACACATGCCTCCAAGAGCTGGACCTGAG...TTTTAATCCCAGGTGGATGGAGCTGAGGCCAGGCTGGTCTACAAGTGAGTTAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR TCA 90 bp AGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGTCTGAAAAGCCGGCTGAATTCCTGTTGGCGATaGCAGCGGCTGCGAGGTCCT +
Preference number: 4 (lower is better)
Translates to: SASILFVSVCTWRLKSRLNSCWR*QRLRGP
Trigger: AGGACCTCGCAGCCGCTGTCATCGCCAACAGGAATT...CAGCCGGCTTTTCAGACGCCATGTACACACAGAGACAAACAAAATGGATGCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR GCA 90 bp CTATGTAGCGGCCATCAAAGTGGAGGCCCTCTCTTGAGCCTGAATGAGAAAGTGTTCAGCCTCAGGTTCTaGAGCTTGCAGCTGGCATGT +
Preference number: 4 (lower is better)
Translates to: LCSGHQSGGPLLSLNEKVFSLRF*SLQLAC
Trigger: ACATGCCAGCTGCAAGCTGCAGAACCTGAGGCTGAA...CACTTTCTCATTCAGGCTCAAGAGAGGGCCTCCACTTTGATGGCCGCTACATAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR GCA 90 bp CGCGGCTTGGCGGGAAAGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGAGAAAGGTCCTCACATaGTTTGGAGGTGAGTCCGCA +
Preference number: 4 (lower is better)
Translates to: RGLAGKCIHFVCLCVYMARKVLT*FGGESA
Trigger: TGCGGACTCACCTCCAAAGCATGTGAGGACCTTTCT...CGCCATGTACACACAGAGACAAACAAAATGGATGCACTTTCCCGCCAAGCCGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR GCA 90 bp AGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGTCTGAAAAGCCGGCTGAGCTTGCAGCCTGGATaGCTCAGCCTCTTGCACAGC +
Preference number: 4 (lower is better)
Translates to: SASILFVSVCTWRLKSRLSLQPG*LSLLHS
Trigger: GCTGTGCAAGAGGCTGAGGCATCCAGGCTGCAAGCT...CAGCCGGCTTTTCAGACGCCATGTACACACAGAGACAAACAAAATGGATGCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR TCA 90 bp GCTAACTCACTTGTAGACCAGCCTGGCCTCAGCTCCATCCACCTGGGATTAAAATGTCTCCCAAGTCATTaGAGCTCAGGTCCAGCTCTT +
Preference number: 4 (lower is better)
Translates to: ANSLVDQPGLSSIHLGLKCLPSH*SSGPAL
Trigger: AAGAGCTGGACCTGAGCTTCAATGACTTGGGAGACA...TTTTAATCCCAGGTGGATGGAGCTGAGGCCAGGCTGGTCTACAAGTGAGTTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR GCA 90 bp CAACACATAGCTGGAAGTGTTTTCAACAGTAATAGGGCACCTTTTGGGAGACACATTCCAGAGGCCCTCTaGAGCCAGAGAGACCAGGCC +
Preference number: 4 (lower is better)
Translates to: QHIAGSVFNSNRAPFGRHIPEAL*SQRDQA
Trigger: GGCCTGGTCTCTCTGGCTGCAGAGGGCCTCTGGAAT...GTGTCTCCCAAAAGGTGCCCTATTACTGTTGAAAACACTTCCAGCTATGTGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CCA 90 bp TTTACAGGAGCGGACAACCTGTGTGGGGGTTTAGGCTTGGAGTTTAATGGGTCCCAGGGAATTTTGTCCTaGCTCAGGTCCTCTGCAATC +
Preference number: 4 (lower is better)
Translates to: FTGADNLCGGLGLEFNGSQGILS*LRSSAI
Trigger: GATTGCAGAGGACCTGAGCCAGGACAAAATTCCCTG...GGACCCATTAAACTCCAAGCCTAAACCCCCACACAGGTTGTCCGCTCCTGTAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CCA 90 bp GAACTTCAATCAACCAGAGACTCCTTGCTTGCTCATCTTGGTGAGACTCAAATGGAGCAGCTCCAGGCCTaGCACCCCAATGCTGTTGTC +
Preference number: 4 (lower is better)
Translates to: ELQSTRDSLLAHLGETQMEQLQA*HPNAVV
Trigger: GACAACAGCATTGGGGTGCCAGGCCTGGAGCTGCTC...CATTTGAGTCTCACCAAGATGAGCAAGCAAGGAGTCTCTGGTTGATTGAAGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CAA 72 bp TTTACAGGAGCGGACAACCTGTGTGGGGGTTTAGGCTaGGAGTTTAATGGGTCCTATCCTAAAGAGGGCGGT +
Preference number: 4 (lower is better)
Translates to: FTGADNLCGGLG*EFNGSYPKEGG
Trigger: ACCGCCCTCTTTAGGATAGGACCCATTAAACTCCAAGCCTAAACCCCCACACAGGTTGTCCGCTCCTGTAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CAA 72 bp CACCTATGTAGCGGCCATCAAAGTGGAGGCCCTCTCTaGAGCCTGAATGAGAAAGTGCTTCCACTTTGTGTG +
Preference number: 4 (lower is better)
Translates to: HLCSGHQSGGPL*SLNEKVLPLCV
Trigger: CACACAAAGTGGAAGCACTTTCTCATTCAGGCTCAAGAGAGGGCCTCCACTTTGATGGCCGCTACATAGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR GCA 90 bp CAACACATAGCTGGAAGTGTTTTCAACAGTAATAGGGCACCTTTTGGGAGACACAAGTGGCTCAGGGCCTaGTGGATGAAGTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: QHIAGSVFNSNRAPFGRHKWLRA*WMKSSS
Trigger: GGAGGAGGACTTCATCCAGCAGGCCCTGAGCCACTT...GTGTCTCCCAAAAGGTGCCCTATTACTGTTGAAAACACTTCCAGCTATGTGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR GCA 90 bp CCCATAATACCTTTTGGCTTTACAATAGCCCAGGCTCATGAGGGCTGGGATTACGCCTTACACCCTGGCTaGCCAAGGCATTTCGGTATA +
Preference number: 4 (lower is better)
Translates to: PIIPFGFTIAQAHEGWDYALHPG*PRHFGI
Trigger: TATACCGAAATGCCTTGGGCAGCCAGGGTGTAAGGC...GTAATCCCAGCCCTCATGAGCCTGGGCTATTGTAAAGCCAAAAGGTATTATGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR GCA 90 bp CTATGTAGCGGCCATCAAAGTGGAGGCCCTCTCTTGAGCCTGAATGAGAAAGTGTTTTGTGACTCGAAGTaGTGCCATCCTCCTGTGAGT +
Preference number: 4 (lower is better)
Translates to: LCSGHQSGGPLLSLNEKVFCDSK*CHPPVS
Trigger: ACTCACAGGAGGATGGCAGCACTTCGAGTCACAAAA...CACTTTCTCATTCAGGCTCAAGAGAGGGCCTCCACTTTGATGGCCGCTACATAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CCA 90 bp GCTAACTCACTTGTAGACCAGCCTGGCCTCAGCTCCATCCACCTGGGATTAAAACTTTTCTTGGAGCATTaGGAGAGACATCCAAAGGGC +
Preference number: 4 (lower is better)
Translates to: ANSLVDQPGLSSIHLGLKLFLEH*ERHPKG
Trigger: GCCCTTTGGATGTCTCTCCCAATGCTCCAAGAAAAG...TTTTAATCCCAGGTGGATGGAGCTGAGGCCAGGCTGGTCTACAAGTGAGTTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CCA 90 bp CCCATAATACCTTTTGGCTTTACAATAGCCCAGGCTCATGAGGGCTGGGATTACCCAGCTCGATCAGGTTaGAGTTGGTACAGACAGCTG +
Preference number: 4 (lower is better)
Translates to: PIIPFGFTIAQAHEGWDYPARSG*SWYRQL
Trigger: CAGCTGTCTGTACCAACTCCAACCTGATCGAGCTGG...GTAATCCCAGCCCTCATGAGCCTGGGCTATTGTAAAGCCAAAAGGTATTATGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CCA 90 bp CAACACATAGCTGGAAGTGTTTTCAACAGTAATAGGGCACCTTTTGGGAGACACTCTGCAGCTTGCAGCTaGCATGTCGGAGGCCTTGAC +
Preference number: 4 (lower is better)
Translates to: QHIAGSVFNSNRAPFGRHSAACS*HVGGLD
Trigger: GTCAAGGCCTCCGACATGCCAGCTGCAAGCTGCAGA...GTGTCTCCCAAAAGGTGCCCTATTACTGTTGAAAACACTTCCAGCTATGTGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CAA 72 bp ATGAAGGTTTCCTGGAACTGGGACATGTGGGTGCTATaGAATGAACCAAGGTGCTATGGGAGCAACCAGTGC +
Preference number: 4 (lower is better)
Translates to: MKVSWNWDMWVL*NEPRCYGSNQC
Trigger: GCACTGGTTGCTCCCATAGCACCTTGGTTCATTCAATAGCACCCACATGTCCCAGTTCCAGGAAACCTTCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CAA 72 bp CTTTGTGTGCCACTGCATGGGGAAAACATCATAGCTTaGCATCTGACGCATCGGTTTACAGGAGCGGACAAC +
Preference number: 4 (lower is better)
Translates to: LCVPLHGENIIA*HLTHRFTGADN
Trigger: GTTGTCCGCTCCTGTAAACCGATGCGTCAGATGCAAAGCTATGATGTTTTCCCCATGCAGTGGCACACAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR TCA 90 bp CAACACATAGCTGGAAGTGTTTTCAACAGTAATAGGGCACCTTTTGGGAGACACGCCAGCAGCTGGAGATaGGGTCTTGTACACTGCACT +
Preference number: 4 (lower is better)
Translates to: QHIAGSVFNSNRAPFGRHASSWR*GLVHCT
Trigger: AGTGCAGTGTACAAGACCTCATCTCCAGCTGCTGGC...GTGTCTCCCAAAAGGTGCCCTATTACTGTTGAAAACACTTCCAGCTATGTGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR TCA 90 bp CTATGTAGCGGCCATCAAAGTGGAGGCCCTCTCTTGAGCCTGAATGAGAAAGTGATCTCATCTCTTCGTTaGGGAGGCCAAACAGAAAGT +
Preference number: 4 (lower is better)
Translates to: LCSGHQSGGPLLSLNEKVISSLR*GGQTES
Trigger: ACTTTCTGTTTGGCCTCCTCAACGAAGAGATGAGAT...CACTTTCTCATTCAGGCTCAAGAGAGGGCCTCCACTTTGATGGCCGCTACATAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR TCA 90 bp TTTACAGGAGCGGACAACCTGTGTGGGGGTTTAGGCTTGGAGTTTAATGGGTCCGTGCTCCATCTTTGTTaGGATGCTTCTGACTACAAC +
Preference number: 4 (lower is better)
Translates to: FTGADNLCGGLGLEFNGSVLHLC*DASDYN
Trigger: GTTGTAGTCAGAAGCATCTCAACAAAGATGGAGCAC...GGACCCATTAAACTCCAAGCCTAAACCCCCACACAGGTTGTCCGCTCCTGTAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR GCA 90 bp CAACACATAGCTGGAAGTGTTTTCAACAGTAATAGGGCACCTTTTGGGAGACACGTGCAGCTTCTCCAGTaGACAGGGTCGTGTGGTGAT +
Preference number: 4 (lower is better)
Translates to: QHIAGSVFNSNRAPFGRHVQLLQ*TGSCGD
Trigger: ATCACCACACGACCCTGTGCACTGGAGAAGCTGCAC...GTGTCTCCCAAAAGGTGCCCTATTACTGTTGAAAACACTTCCAGCTATGTGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR GCA 90 bp AGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGTCTGAAAAGCCGGCTGCTCTCTGCCATTCAGTaGACAGTACATGGCTGCGAA +
Preference number: 4 (lower is better)
Translates to: SASILFVSVCTWRLKSRLLSAIQ*TVHGCE
Trigger: TTCGCAGCCATGTACTGTGCACTGAATGGCAGAGAG...CAGCCGGCTTTTCAGACGCCATGTACACACAGAGACAAACAAAATGGATGCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR GCA 90 bp CAACACATAGCTGGAAGTGTTTTCAACAGTAATAGGGCACCTTTTGGGAGACACTCACCTGAGGGGAGATaGTCCAGCCGAGATTCCTCT +
Preference number: 4 (lower is better)
Translates to: QHIAGSVFNSNRAPFGRHSPEGR*SSRDSS
Trigger: AGAGGAATCTCGGCTGGAGCATCTCCCCTCAGGTGA...GTGTCTCCCAAAAGGTGCCCTATTACTGTTGAAAACACTTCCAGCTATGTGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR GCA 90 bp TCAAATGTGGGGCACACTTCTGGACTGTACATAGAAAGTGCTACTACTTTTGAGCTCAGCTGGATCATCTaGAGCCTACACCTGGGGTGC +
Preference number: 4 (lower is better)
Translates to: SNVGHTSGLYIESATTFELSWII*SLHLGC
Trigger: GCACCCCAGGTGTAGGCTGCAGATGATCCAGCTGAG...CTCAAAAGTAGTAGCACTTTCTATGTACAGTCCAGAAGTGTGCCCCACATTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CCA 90 bp CCCATAATACCTTTTGGCTTTACAATAGCCCAGGCTCATGAGGGCTGGGATTACATGAAGTCCTCCTCCTaGACCTCATACAAGCAGCTG +
Preference number: 4 (lower is better)
Translates to: PIIPFGFTIAQAHEGWDYMKSSS*TSYKQL
Trigger: CAGCTGCTTGTATGAGGTCCAGGAGGAGGACTTCAT...GTAATCCCAGCCCTCATGAGCCTGGGCTATTGTAAAGCCAAAAGGTATTATGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CCA 90 bp GAATTACCCTGTACTAGCTTAAAGGTGCCTTTAAGCATAGCCACATTTAAGCCCAGGCATGTGTTGACCTaGAGCACACTGGCGATCCCC +
Preference number: 4 (lower is better)
Translates to: ELPCTSLKVPLSIATFKPRHVLT*STLAIP
Trigger: GGGGATCGCCAGTGTGCTCCAGGTCAACACATGCCT...GGGCTTAAATGTGGCTATGCTTAAAGGCACCTTTAAGCTAGTACAGGGTAATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CAA 72 bp AAGCATCGGAACTTCAATCAACCAGAGACTCCTTGCTaGCTCATCTTGGTGAGACTCAAATGTGGGGCACAC +
Preference number: 4 (lower is better)
Translates to: KHRNFNQPETPC*LILVRLKCGAH
Trigger: GTGTGCCCCACATTTGAGTCTCACCAAGATGAGCAAGCAAGGAGTCTCTGGTTGATTGAAGTTCCGATGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CAA 72 bp GAGAAAGCATCGGAACTTCAATCAACCAGAGACTCCTaGCTTGCTCATCTTGGTGAGACTCAAATGTGGGGC +
Preference number: 4 (lower is better)
Translates to: EKASELQSTRDS*LAHLGETQMWG
Trigger: GCCCCACATTTGAGTCTCACCAAGATGAGCAAGCAAGGAGTCTCTGGTTGATTGAAGTTCCGATGCTTTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CCA 90 bp CGCGGCTTGGCGGGAAAGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGCATTTGATACCCTTCTaGAATATGTTCACGTTGAGG +
Preference number: 4 (lower is better)
Translates to: RGLAGKCIHFVCLCVYMAHLIPF*NMFTLR
Trigger: CCTCAACGTGAACATATTCCAGAAGGGTATCAAATG...CGCCATGTACACACAGAGACAAACAAAATGGATGCACTTTCCCGCCAAGCCGCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CCA 90 bp CCCATAATACCTTTTGGCTTTACAATAGCCCAGGCTCATGAGGGCTGGGATTACTCAGTGCACAGTACATaGCTGCGAAGAATTCCTGGA +
Preference number: 4 (lower is better)
Translates to: PIIPFGFTIAQAHEGWDYSVHST*LRRIPG
Trigger: TCCAGGAATTCTTCGCAGCCATGTACTGTGCACTGA...GTAATCCCAGCCCTCATGAGCCTGGGCTATTGTAAAGCCAAAAGGTATTATGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CCA 90 bp TCAAATGTGGGGCACACTTCTGGACTGTACATAGAAAGTGCTACTACTTTTGAGTCGAAGCTTGCAGCCTaGATGCCTCAGCCTCTTGCA +
Preference number: 4 (lower is better)
Translates to: SNVGHTSGLYIESATTFESKLAA*MPQPLA
Trigger: TGCAAGAGGCTGAGGCATCCAGGCTGCAAGCTTCGA...CTCAAAAGTAGTAGCACTTTCTATGTACAGTCCAGAAGTGTGCCCCACATTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR TCA 90 bp GAACTTCAATCAACCAGAGACTCCTTGCTTGCTCATCTTGGTGAGACTCAAATGAGTTTGCAATCTGGATaGCTGAGGCCTTCACACAGC +
Preference number: 4 (lower is better)
Translates to: ELQSTRDSLLAHLGETQMSLQSG*LRPSHS
Trigger: GCTGTGTGAAGGCCTCAGTCATCCAGATTGCAAACT...CATTTGAGTCTCACCAAGATGAGCAAGCAAGGAGTCTCTGGTTGATTGAAGTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR GCA 90 bp GAATTACCCTGTACTAGCTTAAAGGTGCCTTTAAGCATAGCCACATTTAAGCCCTCCTCACCGCCTCTCTaGCATTCAGTGCACAGTACA +
Preference number: 4 (lower is better)
Translates to: ELPCTSLKVPLSIATFKPSSPPL*HSVHST
Trigger: TGTACTGTGCACTGAATGGCAGAGAGGCGGTGAGGA...GGGCTTAAATGTGGCTATGCTTAAAGGCACCTTTAAGCTAGTACAGGGTAATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CCA 90 bp GCTAACTCACTTGTAGACCAGCCTGGCCTCAGCTCCATCCACCTGGGATTAAAATCATGGAAAGAAGGATaGAGTTTATCGAAGCCATCA +
Preference number: 4 (lower is better)
Translates to: ANSLVDQPGLSSIHLGLKSWKEG*SLSKPS
Trigger: TGATGGCTTCGATAAACTCCATCCTTCTTTCCATGA...TTTTAATCCCAGGTGGATGGAGCTGAGGCCAGGCTGGTCTACAAGTGAGTTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CCA 90 bp GAACTTCAATCAACCAGAGACTCCTTGCTTGCTCATCTTGGTGAGACTCAAATGCTCCCAGCCTTGTTTTaGATCCATGCCAACACTTCC +
Preference number: 4 (lower is better)
Translates to: ELQSTRDSLLAHLGETQMLPALF*IHANTS
Trigger: GGAAGTGTTGGCATGGATCCAAAACAAGGCTGGGAG...CATTTGAGTCTCACCAAGATGAGCAAGCAAGGAGTCTCTGGTTGATTGAAGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CAA 72 bp GGGCAAAATCTAATAACCCAGGATAGGATGGGAGCATaGGCTGTCAACTATACCAGGTGTGCAAATCTTGGG +
Preference number: 4 (lower is better)
Translates to: GQNLITQDRMGA*AVNYTRCANLG
Trigger: CCCAAGATTTGCACACCTGGTATAGTTGACAGCCAATGCTCCCATCCTATCCTGGGTTATTAGATTTTGCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CAA 72 bp AACTTCAATCAACCAGAGACTCCTTGCTTGCTCATCTaGGTGAGACTCAAATGTGGGGCACACTTCTGGACT +
Preference number: 4 (lower is better)
Translates to: NFNQPETPCLLI*VRLKCGAHFWT
Trigger: AGTCCAGAAGTGTGCCCCACATTTGAGTCTCACCAAGATGAGCAAGCAAGGAGTCTCTGGTTGATTGAAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR TCA 90 bp GAATTACCCTGTACTAGCTTAAAGGTGCCTTTAAGCATAGCCACATTTAAGCCCGGTACAGACAGCTGCTaGAAGGTATGCACTGTAGAC +
Preference number: 4 (lower is better)
Translates to: ELPCTSLKVPLSIATFKPGTDSC*KVCTVD
Trigger: GTCTACAGTGCATACCTTTCAGCAGCTGTCTGTACC...GGGCTTAAATGTGGCTATGCTTAAAGGCACCTTTAAGCTAGTACAGGGTAATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR TCA 90 bp GAATTACCCTGTACTAGCTTAAAGGTGCCTTTAAGCATAGCCACATTTAAGCCCTGCAATCTGGATGACTaGGGCCTTCACACAGCAGAA +
Preference number: 4 (lower is better)
Translates to: ELPCTSLKVPLSIATFKPCNLDD*GLHTAE
Trigger: TTCTGCTGTGTGAAGGCCTCAGTCATCCAGATTGCA...GGGCTTAAATGTGGCTATGCTTAAAGGCACCTTTAAGCTAGTACAGGGTAATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CCA 90 bp CAACACATAGCTGGAAGTGTTTTCAACAGTAATAGGGCACCTTTTGGGAGACACAGCTCCAGCAGGCTCTaGTTCATTTTGAGAGTAGAG +
Preference number: 4 (lower is better)
Translates to: QHIAGSVFNSNRAPFGRHSSSRL*FILRVE
Trigger: CTCTACTCTCAAAATGAACCAGAGCCTGCTGGAGCT...GTGTCTCCCAAAAGGTGCCCTATTACTGTTGAAAACACTTCCAGCTATGTGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CCA 90 bp CTGGAATCGCTTACCTGCTTGAAACAGGTATGTGTGCTGGAGGTGAATTCGTTGCCCCCAGAGCATTATTaGTCAAATAAAGCTCATGCA +
Preference number: 4 (lower is better)
Translates to: LESLTCLKQVCVLEVNSLPPEHY*SNKAHA
Trigger: TGCATGAGCTTTATTTGACCAATAATGCTCTGGGGG...CAACGAATTCACCTCCAGCACACATACCTGTTTCAAGCAGGTAAGCGATTCCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR TCA 90 bp AGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGTCTGAAAAGCCGGCTGTCAACTCCCTGCAGCTaGTATAGAAGACATAATCAA +
Preference number: 4 (lower is better)
Translates to: SASILFVSVCTWRLKSRLSTPCS*YRRHNQ
Trigger: TTGATTATGTCTTCTATATCAGCTGCAGGGAGTTGA...CAGCCGGCTTTTCAGACGCCATGTACACACAGAGACAAACAAAATGGATGCACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR TCA 90 bp GAACTTCAATCAACCAGAGACTCCTTGCTTGCTCATCTTGGTGAGACTCAAATGTCAAATAGAATCTTCTaGTTCCAGAGGCCCTCTGCA +
Preference number: 4 (lower is better)
Translates to: ELQSTRDSLLAHLGETQMSNRIF*FQRPSA
Trigger: TGCAGAGGGCCTCTGGAATCAGAAGATTCTATTTGA...CATTTGAGTCTCACCAAGATGAGCAAGCAAGGAGTCTCTGGTTGATTGAAGTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CCA 90 bp TCAAATGTGGGGCACACTTCTGGACTGTACATAGAAAGTGCTACTACTTTTGAGCGATCAGGTTGGAGTTaGTACAGACAGCTGCTGAAA +
Preference number: 4 (lower is better)
Translates to: SNVGHTSGLYIESATTFERSGWS*YRQLLK
Trigger: TTTCAGCAGCTGTCTGTACCAACTCCAACCTGATCG...CTCAAAAGTAGTAGCACTTTCTATGTACAGTCCAGAAGTGTGCCCCACATTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR GCA 90 bp GAATTACCCTGTACTAGCTTAAAGGTGCCTTTAAGCATAGCCACATTTAAGCCCTGCACAGTACATGGCTaGGAAGAATTCCTGGAAACT +
Preference number: 4 (lower is better)
Translates to: ELPCTSLKVPLSIATFKPCTVHG*EEFLET
Trigger: AGTTTCCAGGAATTCTTCGCAGCCATGTACTGTGCA...GGGCTTAAATGTGGCTATGCTTAAAGGCACCTTTAAGCTAGTACAGGGTAATTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR GCA 90 bp TCAAATGTGGGGCACACTTCTGGACTGTACATAGAAAGTGCTACTACTTTTGAGCTTGTTTTGGATCCATaGCAACACTTCCTCCTTCAC +
Preference number: 4 (lower is better)
Translates to: SNVGHTSGLYIESATTFELVLDP*QHFLLH
Trigger: GTGAAGGAGGAAGTGTTGGCATGGATCCAAAACAAG...CTCAAAAGTAGTAGCACTTTCTATGTACAGTCCAGAAGTGTGCCCCACATTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CAA 72 bp TTCTGTAGCTATCTTCAGATTCACCCAAAGAAGGCATaGGATCCCATTACAGATGATTGCAAGCCACCATGT +
Preference number: 4 (lower is better)
Translates to: FCSYLQIHPKKA*DPITDDCKPPC
Trigger: ACATGGTGGCTTGCAATCATCTGTAATGGGATCCAATGCCTTCTTTGGGTGAATCTGAAGATAGCTACAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR TCA 90 bp GAATTACCCTGTACTAGCTTAAAGGTGCCTTTAAGCATAGCCACATTTAAGCCCTCCCCAGGAATAATTTaGATTTCTTCAGTTCCCCAG +
Preference number: 4 (lower is better)
Translates to: ELPCTSLKVPLSIATFKPSPGII*ISSVPQ
Trigger: CTGGGGAACTGAAGAAATTCAAATTATTCCTGGGGA...GGGCTTAAATGTGGCTATGCTTAAAGGCACCTTTAAGCTAGTACAGGGTAATTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR TCA 90 bp TCAAATGTGGGGCACACTTCTGGACTGTACATAGAAAGTGCTACTACTTTTGAGCAGTTCTACCAGATATaGGTTGTTGCTGAGAACAGA +
Preference number: 4 (lower is better)
Translates to: SNVGHTSGLYIESATTFEQFYQI*VVAENR
Trigger: TCTGTTCTCAGCAACAACTCATATCTGGTAGAACTG...CTCAAAAGTAGTAGCACTTTCTATGTACAGTCCAGAAGTGTGCCCCACATTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CAA 72 bp ATGGATTCTCTTTGTTTTTCAGGTGTTCCAGTTGAGTaGAATGTAATCCTGCCTAGCCTGGGGTACTTACTT +
Preference number: 4 (lower is better)
Translates to: MDSLCFSGVPVE*NVILPSLGYLL
Trigger: AAGTAAGTACCCCAGGCTAGGCAGGATTACATTCAACTCAACTGGAACACCTGAAAAACAAAGAGAATCCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
3UTR CAA 72 bp ATGCTTCAATCTGTGGTACTCAAACTGTGTGACATTTaGTTCTTTGTAAGAAGTGCCGCAGAGTTTGTAGTG +
Preference number: 4 (lower is better)
Translates to: MLQSVVLKLCDI*FFVRSAAEFVV
Trigger: CACTACAAACTCTGCGGCACTTCTTACAAAGAACAAAATGTCACACAGTTTGAGTACCACAGATTGAAGCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS GCA 90 bp CGGCCAGCTGCAGCCTCCAACAGACACTTCCTCAGCTGGATCATCTaGAGCCTACACCTGGGGTGCTGCAGCCCCTCACAGAGCAGCTCC +
Preference number: 5 (lower is better)
Translates to: RPAAASNRHFLSWII*SLHLGCCSPSQSSS
Trigger: GGAGCTGCTCTGTGAGGGGCTGCAGCACCCCAGGTGTAGGCTGCAGATGATCCAGCTGAGGAAGTGTCTGTTGGAGGCTGCAGCTGGCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS TCA 90 bp GCGATGACAGCGGCTGCGAGGTCCTGGCAGGCTGATCCGGAGATCTaGCACCTCTTCAGCCTCAGGTTCTGCAGCTTGCAGCTGGCATGT +
Preference number: 5 (lower is better)
Translates to: AMTAAARSWQADPEI*HLFSLRFCSLQLAC
Trigger: ACATGCCAGCTGCAAGCTGCAGAACCTGAGGCTGAAGAGGTGTCAGATCTCCGGATCAGCCTGCCAGGACCTCGCAGCCGCTGTCATCGC
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CCA 90 bp TCACATGCTTTGGAGGTGAGTCCGCAGTTGTCCAGCCACAGCTTCTaGAGTCTGCAGGTCTGGTGCCTCAGGCCTTCCCCCAGCAGCTGC +
Preference number: 5 (lower is better)
Translates to: SHALEVSPQLSSHSF*SLQVWCLRPSPSSC
Trigger: GCAGCTGCTGGGGGAAGGCCTGAGGCACCAGACCTGCAGACTCCAGAAGCTGTGGCTGGACAACTGCGGACTCACCTCCAAAGCATGTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CCA 90 bp AAGTCATTGAAGCTCAGGTCCAGCTCTTGGAGGCATGTGTTGACCTaGAGCACACTGGCGATCCCCACACACGCGACTGAGCCCAGTCGG +
Preference number: 5 (lower is better)
Translates to: KSLKLRSSSWRHVLT*STLAIPTHATEPSR
Trigger: CCGACTGGGCTCAGTCGCGTGTGTGGGGATCGCCAGTGTGCTCCAGGTCAACACATGCCTCCAAGAGCTGGACCTGAGCTTCAATGACTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CCA 90 bp TGCAGGCCCCTGTCTCCCAAGTCATTGAAGCTCAGGTCCAGCTCTTaGAGGCATGTGTTGACCTGGAGCACACTGGCGATCCCCACACAC +
Preference number: 5 (lower is better)
Translates to: CRPLSPKSLKLRSSS*RHVLTWSTLAIPTH
Trigger: GTGTGTGGGGATCGCCAGTGTGCTCCAGGTCAACACATGCCTCCAAGAGCTGGACCTGAGCTTCAATGACTTGGGAGACAGGGGCCTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS TCA 90 bp TTCAGCCTCAGGTTCTGCAGCTTGCAGCTGGCATGTCGGAGGCCTTaGCAGAGCAGCCTTACACCCTGGCTGCCCAAGGCATTTCGGTAT +
Preference number: 5 (lower is better)
Translates to: FSLRFCSLQLACRRP*QSSLTPWLPKAFRY
Trigger: ATACCGAAATGCCTTGGGCAGCCAGGGTGTAAGGCTGCTCTGTCAAGGCCTCCGACATGCCAGCTGCAAGCTGCAGAACCTGAGGCTGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS GCA 90 bp CTGATCCGGAGATCTGACACCTCTTCAGCCTCAGGTTCTGCAGCTTaGAGCTGGCATGTCGGAGGCCTTGACAGAGCAGCCTTACACCCT +
Preference number: 5 (lower is better)
Translates to: LIRRSDTSSASGSAA*SWHVGGLDRAALHP
Trigger: AGGGTGTAAGGCTGCTCTGTCAAGGCCTCCGACATGCCAGCTGCAAGCTGCAGAACCTGAGGCTGAAGAGGTGTCAGATCTCCGGATCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CAA 90 bp TACCTGGGGGCTCCATGTGCGTCCTGTCGCTGCTTGGAGCTGTTACACCTATGTTGGTTGGCTGGGACTTaGAAGGTTGGAGTCCCTGGC +
Preference number: 5 (lower is better)
Translates to: YLGAPCASCRCLELLHLCWLAGT*KVGVPG
Trigger: GCCAGGGACTCCAACCTTCAAAGTCCCAGCCAACCA...ACATAGGTGTAACAGCTCCAAGCAGCGACAGGACGCACATGGAGCCCCCAGGTA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CCA 90 bp AGCCAGAGAGACCAGGCCTCTCTGGTTGGCTGGGACTTTGAAGGTTaGAGTCCCTGGCTTGGGCTGCATCAGGCTCAGAAGGTAGAACAT +
Preference number: 5 (lower is better)
Translates to: SQRDQASLVGWDFEG*SPWLGLHQAQKVEH
Trigger: ATGTTCTACCTTCTGAGCCTGATGCAGCCCAAGCCAGGGACTCCAACCTTCAAAGTCCCAGCCAACCAGAGAGGCCTGGTCTCTCTGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CCA 90 bp GCCCAGTCGGCAAATGCCCAACCGAAGGGTCTGGAGTTTGCAATCTaGATGACTGAGGCCTTCACACAGCAGAAGCACCCCAGAATCTCC +
Preference number: 5 (lower is better)
Translates to: AQSANAQPKGLEFAI*MTEAFTQQKHPRIS
Trigger: GGAGATTCTGGGGTGCTTCTGCTGTGTGAAGGCCTCAGTCATCCAGATTGCAAACTCCAGACCCTTCGGTTGGGCATTTGCCGACTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS TCA 90 bp GGCACGCTGATTGGCTCTCAAAAAGGCATAGACCATTATTTGGAGTaGCCCTCACCAGGTCTTCTCCCTGTCCTCGCTCCCACAGGTCCT +
Preference number: 5 (lower is better)
Translates to: GTLIGSQKGIDHYLE*PSPGLLPVLAPTGP
Trigger: AGGACCTGTGGGAGCGAGGACAGGGAGAAGACCTGGTGAGGGTCACTCCAAATAATGGTCTATGCCTTTTTGAGAGCCAATCAGCGTGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS GCA 90 bp GTGGTGGTCCTAGGTGTTTGTCTTAAAAGCTCCCCACTTTCCAGCTaGTGCTTTAGGCAGGTGCAGACCACCCAGGACACCATGGGAACA +
Preference number: 5 (lower is better)
Translates to: VVVLGVCLKSSPLSS*CFRQVQTTQDTMGT
Trigger: TGTTCCCATGGTGTCCTGGGTGGTCTGCACCTGCCTAAAGCAGCAGCTGGAAAGTGGGGAGCTTTTAAGACAAACACCTAGGACCACCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS GCA 90 bp ATGCAGGGTCTGGCTGATTCCCAGGATAGAAGAAAGGTCCTCACATaGTTTGGAGGTGAGTCCGCAGTTGTCCAGCCACAGCTTCTGGAG +
Preference number: 5 (lower is better)
Translates to: MQGLADSQDRRKVLT*FGGESAVVQPQLLE
Trigger: CTCCAGAAGCTGTGGCTGGACAACTGCGGACTCACCTCCAAAGCATGTGAGGACCTTTCTTCTATCCTGGGAATCAGCCAGACCCTGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CAA 90 bp GCTAACTCACTTGTAGACCAGCCTGGCCTCAGCTCCATCCACCTGGGATTAAAACGTCCCCAGGGAATTTaGTCCTGGCTCAGGTCCTCT +
Preference number: 5 (lower is better)
Translates to: ANSLVDQPGLSSIHLGLKRPQGI*SWLRSS
Trigger: AGAGGACCTGAGCCAGGACAAAATTCCCTGGGGACG...TTTTAATCCCAGGTGGATGGAGCTGAGGCCAGGCTGGTCTACAAGTGAGTTAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS TCA 90 bp AGGGGTTTCCTGTCAGATCCAGTTCTACCAGATATGAGTTGTTGCTaGGAACAGAAGCCAGGGATCGGCCAGCTGCAGCCTCCAACAGAC +
Preference number: 5 (lower is better)
Translates to: RGFLSDPVLPDMSCC*EQKPGIGQLQPPTD
Trigger: GTCTGTTGGAGGCTGCAGCTGGCCGATCCCTGGCTTCTGTTCTCAGCAACAACTCATATCTGGTAGAACTGGATCTGACAGGAAACCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS TCA 90 bp AGTCGGCAAATGCCCAACCGAAGGGTCTGGAGTTTGCAATCTGGATaGCTGAGGCCTTCACACAGCAGAAGCACCCCAGAATCTCCAAGA +
Preference number: 5 (lower is better)
Translates to: SRQMPNRRVWSLQSG*LRPSHSRSTPESPR
Trigger: TCTTGGAGATTCTGGGGTGCTTCTGCTGTGTGAAGGCCTCAGTCATCCAGATTGCAAACTCCAGACCCTTCGGTTGGGCATTTGCCGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS GCA 90 bp TCTTTTTATTCAGGTCCATCCCAAACAGCCACAGGACTCGAAGCTTaGAGCCTGGATGCCTCAGCCTCTTGCACAGCAGACAGACACCTG +
Preference number: 5 (lower is better)
Translates to: SFYSGPSQTATGLEA*SLDASASCTADRHL
Trigger: CAGGTGTCTGTCTGCTGTGCAAGAGGCTGAGGCATCCAGGCTGCAAGCTTCGAGTCCTGTGGCTGTTTGGGATGGACCTGAATAAAAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS TCA 90 bp CGAATCTTCCAAGGGGTTTCCTGTCAGATCCAGTTCTACCAGATATaGGTTGTTGCTGAGAACAGAAGCCAGGGATCGGCCAGCTGCAGC +
Preference number: 5 (lower is better)
Translates to: RIFQGVSCQIQFYQI*VVAENRSQGSASCS
Trigger: GCTGCAGCTGGCCGATCCCTGGCTTCTGTTCTCAGCAACAACTCATATCTGGTAGAACTGGATCTGACAGGAAACCCCTTGGAAGATTCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS TCA 90 bp GGCAAATGCCCAACCGAAGGGTCTGGAGTTTGCAATCTGGATGACTaGGGCCTTCACACAGCAGAAGCACCCCAGAATCTCCAAGATCAT +
Preference number: 5 (lower is better)
Translates to: GKCPTEGSGVCNLDD*GLHTAEAPQNLQDH
Trigger: ATGATCTTGGAGATTCTGGGGTGCTTCTGCTGTGTGAAGGCCTCAGTCATCCAGATTGCAAACTCCAGACCCTTCGGTTGGGCATTTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS GCA 90 bp TTTCCGAAAAACCATACTCAGCCAGCGCTCTCCTCACCGCCTCTCTaGCATTCAGTGCACAGTACATGGCTGCGAAGAATTCCTGGAAAC +
Preference number: 5 (lower is better)
Translates to: FPKNHTQPALSSPPL*HSVHSTWLRRIPGN
Trigger: GTTTCCAGGAATTCTTCGCAGCCATGTACTGTGCACTGAATGGCAGAGAGGCGGTGAGGAGAGCGCTGGCTGAGTATGGTTTTTCGGAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CCA 90 bp CCTGGCTGCCCAAGGCATTTCGGTATAAGGCCAGCTCGATCAGGTTaGAGTTGGTACAGACAGCTGCTGAAAGGTATGCACTGTAGACAT +
Preference number: 5 (lower is better)
Translates to: PGCPRHFGIRPARSG*SWYRQLLKGMHCRH
Trigger: ATGTCTACAGTGCATACCTTTCAGCAGCTGTCTGTACCAACTCCAACCTGATCGAGCTGGCCTTATACCGAAATGCCTTGGGCAGCCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CAA 90 bp TTTACAGGAGCGGACAACCTGTGTGGGGGTTTAGGCTTGGAGTTTAATGGGTCCTCTGACTACAACCACTaGAAAGTGGCTCAGGGCCTG +
Preference number: 5 (lower is better)
Translates to: FTGADNLCGGLGLEFNGSSDYNH*KVAQGL
Trigger: CAGGCCCTGAGCCACTTTCAAGTGGTTGTAGTCAGA...GGACCCATTAAACTCCAAGCCTAAACCCCCACACAGGTTGTCCGCTCCTGTAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CCA 90 bp TGCCCAAGGCATTTCGGTATAAGGCCAGCTCGATCAGGTTGGAGTTaGTACAGACAGCTGCTGAAAGGTATGCACTGTAGACATCAGGCA +
Preference number: 5 (lower is better)
Translates to: CPRHFGIRPARSGWS*YRQLLKGMHCRHQA
Trigger: TGCCTGATGTCTACAGTGCATACCTTTCAGCAGCTGTCTGTACCAACTCCAACCTGATCGAGCTGGCCTTATACCGAAATGCCTTGGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CCA 90 bp GAATCTCCAAGATCATTCAGACCCAGGTCCAGCTCCAGCAGGCTCTaGTTCATTTTGAGAGTAGAGGCCAGATCTTCGCAGGAAGCTTGT +
Preference number: 5 (lower is better)
Translates to: ESPRSFRPRSSSSRL*FILRVEARSSQEAC
Trigger: ACAAGCTTCCTGCGAAGATCTGGCCTCTACTCTCAAAATGAACCAGAGCCTGCTGGAGCTGGACCTGGGTCTGAATGATCTTGGAGATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CAA 90 bp CGCGGCTTGGCGGGAAAGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGTCTTTTCTTGGAGCATaGGGAGAGACATCCAAAGGG +
Preference number: 5 (lower is better)
Translates to: RGLAGKCIHFVCLCVYMASFLGA*GETSKG
Trigger: CCCTTTGGATGTCTCTCCCAATGCTCCAAGAAAAGA...CGCCATGTACACACAGAGACAAACAAAATGGATGCACTTTCCCGCCAAGCCGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CAA 90 bp AGTGCATCCATTTTGTTTGTCTCTGTGTGTACATGGCGTCTGAAAAGCCGGCTGACCAGGCCTCTCTGGTaGGCTGGGACTTTGAAGGTT +
Preference number: 5 (lower is better)
Translates to: SASILFVSVCTWRLKSRLTRPLW*AGTLKV
Trigger: AACCTTCAAAGTCCCAGCCAACCAGAGAGGCCTGGT...CAGCCGGCTTTTCAGACGCCATGTACACACAGAGACAAACAAAATGGATGCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CAA 90 bp GAACTTCAATCAACCAGAGACTCCTTGCTTGCTCATCTTGGTGAGACTCAAATGCTCAGGTTCTGCAGCTaGCAGCTGGCATGTCGGAGG +
Preference number: 5 (lower is better)
Translates to: ELQSTRDSLLAHLGETQMLRFCS*QLACRR
Trigger: CCTCCGACATGCCAGCTGCAAGCTGCAGAACCTGAG...CATTTGAGTCTCACCAAGATGAGCAAGCAAGGAGTCTCTGGTTGATTGAAGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CAA 90 bp CTATGTAGCGGCCATCAAAGTGGAGGCCCTCTCTTGAGCCTGAATGAGAAAGTGATCTTCGCAGGAAGCTaGTCCAAGGTGGCAGATCTT +
Preference number: 5 (lower is better)
Translates to: LCSGHQSGGPLLSLNEKVIFAGS*SKVADL
Trigger: AAGATCTGCCACCTTGGACAAGCTTCCTGCGAAGAT...CACTTTCTCATTCAGGCTCAAGAGAGGGCCTCCACTTTGATGGCCGCTACATAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS TCA 90 bp TCGTCTGGCTCAAAGAGGGTCTCCATTTGGATAGGACTAGTCTGGTaGCGCCTGGTTCTGGAGCGTTCCCACTCTACATCTACAAATTTC +
Preference number: 5 (lower is better)
Translates to: SSGSKRVSIWIGLVW*RLVLERSHSTSTNF
Trigger: GAAATTTGTAGATGTAGAGTGGGAACGCTCCAGAACCAGGCGTCACCAGACTAGTCCTATCCAAATGGAGACCCTCTTTGAGCCAGACGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CAA 90 bp CCCATAATACCTTTTGGCTTTACAATAGCCCAGGCTCATGAGGGCTGGGATTACGAGGACTTCAGTAGGTaGTTTCTCCTCCCAGCAGAG +
Preference number: 5 (lower is better)
Translates to: PIIPFGFTIAQAHEGWDYEDFSR*FLLPAE
Trigger: CTCTGCTGGGAGGAGAAACAACCTACTGAAGTCCTC...GTAATCCCAGCCCTCATGAGCCTGGGCTATTGTAAAGCCAAAAGGTATTATGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CAA 90 bp CCCATAATACCTTTTGGCTTTACAATAGCCCAGGCTCATGAGGGCTGGGATTACAGCTTAACACCCGGCTaGCTTGTCCAGTGTTGTGGA +
Preference number: 5 (lower is better)
Translates to: PIIPFGFTIAQAHEGWDYSLTPG*LVQCCG
Trigger: TCCACAACACTGGACAAGCAAGCCGGGTGTTAAGCT...GTAATCCCAGCCCTCATGAGCCTGGGCTATTGTAAAGCCAAAAGGTATTATGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CAA 90 bp GCTAACTCACTTGTAGACCAGCCTGGCCTCAGCTCCATCCACCTGGGATTAAAACATCTCATCTCTTCGTaGAGGAGGCCAAACAGAAAG +
Preference number: 5 (lower is better)
Translates to: ANSLVDQPGLSSIHLGLKHLISS*RRPNRK
Trigger: CTTTCTGTTTGGCCTCCTCAACGAAGAGATGAGATG...TTTTAATCCCAGGTGGATGGAGCTGAGGCCAGGCTGGTCTACAAGTGAGTTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CAA 90 bp CTGGAATCGCTTACCTGCTTGAAACAGGTATGTGTGCTGGAGGTGAATTCGTTGCCTTCACTCCCAGCCTaGTTTTGGATCCATGCCAAC +
Preference number: 5 (lower is better)
Translates to: LESLTCLKQVCVLEVNSLPSLPA*FWIHAN
Trigger: GTTGGCATGGATCCAAAACAAGGCTGGGAGTGAAGG...CAACGAATTCACCTCCAGCACACATACCTGTTTCAAGCAGGTAAGCGATTCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CAA 90 bp TTTACAGGAGCGGACAACCTGTGTGGGGGTTTAGGCTTGGAGTTTAATGGGTCCAGGCTCTGGTTCATTTaGAGAGTAGAGGCCAGATCT +
Preference number: 5 (lower is better)
Translates to: FTGADNLCGGLGLEFNGSRLWFI*RVEARS
Trigger: AGATCTGGCCTCTACTCTCAAAATGAACCAGAGCCT...GGACCCATTAAACTCCAAGCCTAAACCCCCACACAGGTTGTCCGCTCCTGTAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CAA 90 bp GAACTTCAATCAACCAGAGACTCCTTGCTTGCTCATCTTGGTGAGACTCAAATGGCTCAGGTCCAGCTCTaGGAGGCATGTGTTGACCTG +
Preference number: 5 (lower is better)
Translates to: ELQSTRDSLLAHLGETQMAQVQL*EACVDL
Trigger: CAGGTCAACACATGCCTCCAAGAGCTGGACCTGAGC...CATTTGAGTCTCACCAAGATGAGCAAGCAAGGAGTCTCTGGTTGATTGAAGTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS TCA 90 bp ATATCCAGGTACGGTTTTGTGACTCGAAGTGCTGCCATCCTCCTGTaGGTCTTTTTATTCAGGTCCATCCCAAACAGCCACAGGACTCGA +
Preference number: 5 (lower is better)
Translates to: ISRYGFVTRSAAILL*VFLFRSIPNSHRTR
Trigger: TCGAGTCCTGTGGCTGTTTGGGATGGACCTGAATAAAAAGACTCACAGGAGGATGGCAGCACTTCGAGTCACAAAACCGTACCTGGATAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CCA 90 bp TCTTTTCTTGGAGCATTGGGAGAGACATCCAAAGGGCACGCTGATTaGCTCTCAAAAAGGCATAGACCATTATTTGGAGTGACCCTCACC +
Preference number: 5 (lower is better)
Translates to: SFLGALGETSKGHAD*LSKRHRPLFGVTLT
Trigger: GGTGAGGGTCACTCCAAATAATGGTCTATGCCTTTTTGAGAGCCAATCAGCGTGCCCTTTGGATGTCTCTCCCAATGCTCCAAGAAAAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CAA 90 bp CAACACATAGCTGGAAGTGTTTTCAACAGTAATAGGGCACCTTTTGGGAGACACCAGTCCAACATCACTTaGTGGGCCAGCATGGACTTC +
Preference number: 5 (lower is better)
Translates to: QHIAGSVFNSNRAPFGRHQSNIT*WASMDF
Trigger: GAAGTCCATGCTGGCCCACAAAGTGATGTTGGACTG...GTGTCTCCCAAAAGGTGCCCTATTACTGTTGAAAACACTTCCAGCTATGTGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CAA 90 bp TCAAATGTGGGGCACACTTCTGGACTGTACATAGAAAGTGCTACTACTTTTGAGGCCAGCTCGATCAGGTaGGAGTTGGTACAGACAGCT +
Preference number: 5 (lower is better)
Translates to: SNVGHTSGLYIESATTFEASSIR*ELVQTA
Trigger: AGCTGTCTGTACCAACTCCAACCTGATCGAGCTGGC...CTCAAAAGTAGTAGCACTTTCTATGTACAGTCCAGAAGTGTGCCCCACATTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS GCA 90 bp CTGTACTATAAGCACTCCCATGCAAGTGAAGCACTTCTGTACTTCTaGAATACCTCGCACAAAACGAGCAGACCATGTGCTCCATCTTTG +
Preference number: 5 (lower is better)
Translates to: LYYKHSHASEALLYF*NTSHKTSRPCAPSL
Trigger: CAAAGATGGAGCACATGGTCTGCTCGTTTTGTGCGAGGTATTGCAGAAGTACAGAAGTGCTTCACTTGCATGGGAGTGCTTATAGTACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CCA 90 bp GGACATAGTCTTTGTAGGTTGTCTGTAGATCTTTTCTTGGAGCATTaGGAGAGACATCCAAAGGGCACGCTGATTGGCTCTCAAAAAGGC +
Preference number: 5 (lower is better)
Translates to: GHSLCRLSVDLFLEH*ERHPKGTLIGSQKG
Trigger: GCCTTTTTGAGAGCCAATCAGCGTGCCCTTTGGATGTCTCTCCCAATGCTCCAAGAAAAGATCTACAGACAACCTACAAAGACTATGTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CAA 90 bp TCAAATGTGGGGCACACTTCTGGACTGTACATAGAAAGTGCTACTACTTTTGAGCTGTCTCCCAAGTCATaGAAGCTCAGGTCCAGCTCT +
Preference number: 5 (lower is better)
Translates to: SNVGHTSGLYIESATTFELSPKS*KLRSSS
Trigger: AGAGCTGGACCTGAGCTTCAATGACTTGGGAGACAG...CTCAAAAGTAGTAGCACTTTCTATGTACAGTCCAGAAGTGTGCCCCACATTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS GCA 90 bp GAGTGTAACGATTGCTCAGGTTCACACATTCGCCTAATCGTGCATTaGGGTCTTCCATTAGCTGGAATTTCCTTCGGACATAGTCTTTGT +
Preference number: 5 (lower is better)
Translates to: ECNDCSGSHIRLIVH*GLPLAGISFGHSLC
Trigger: ACAAAGACTATGTCCGAAGGAAATTCCAGCTAATGGAAGACCGCAATGCACGATTAGGCGAATGTGTGAACCTGAGCAATCGTTACACTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CAA 90 bp GAACTTCAATCAACCAGAGACTCCTTGCTTGCTCATCTTGGTGAGACTCAAATGACCAGATATGAGTTGTaGCTGAGAACAGAAGCCAGG +
Preference number: 5 (lower is better)
Translates to: ELQSTRDSLLAHLGETQMTRYEL*LRTEAR
Trigger: CCTGGCTTCTGTTCTCAGCAACAACTCATATCTGGT...CATTTGAGTCTCACCAAGATGAGCAAGCAAGGAGTCTCTGGTTGATTGAAGTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CAA 90 bp CTGGAATCGCTTACCTGCTTGAAACAGGTATGTGTGCTGGAGGTGAATTCGTTGCATAGTCTTTGTAGGTaGTCTGTAGATCTTTTCTTG +
Preference number: 5 (lower is better)
Translates to: LESLTCLKQVCVLEVNSLHSLCR*SVDLFL
Trigger: CAAGAAAAGATCTACAGACAACCTACAAAGACTATG...CAACGAATTCACCTCCAGCACACATACCTGTTTCAAGCAGGTAAGCGATTCCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS-3UTR CAA 90 bp GAATTACCCTGTACTAGCTTAAAGGTGCCTTTAAGCATAGCCACATTTAAGCCCTCTACCAGATATGAGTaGTTGCTGAGAACAGAAGCC +
Preference number: 5 (lower is better)
Translates to: ELPCTSLKVPLSIATFKPSTRYE*LLRTEA
Trigger: GGCTTCTGTTCTCAGCAACAACTCATATCTGGTAGA...GGGCTTAAATGTGGCTATGCTTAAAGGCACCTTTAAGCTAGTACAGGGTAATTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS GCA 72 bp TTCCTCAGCTGGATCATCTGCAGCCTACACCTGGGGTaGTGCAGCCCCTCACAGAGCAGCTCCAGGCCTGGC +
Preference number: 6 (lower is better)
Translates to: FLSWIICSLHLG*CSPSQSSSRPG
Trigger: GCCAGGCCTGGAGCTGCTCTGTGAGGGGCTGCAGCACCCCAGGTGTAGGCTGCAGATGATCCAGCTGAGGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS GCA 72 bp CTGCAGGTCTGGTGCCTCAGGCCTTCCCCCAGCAGCTaGAGGCCCCTGTCTCCCAAGTCATTGAAGCTCAGG +
Preference number: 6 (lower is better)
Translates to: LQVWCLRPSPSS*RPLSPKSLKLR
Trigger: CCTGAGCTTCAATGACTTGGGAGACAGGGGCCTGCAGCTGCTGGGGGAAGGCCTGAGGCACCAGACCTGCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS TCA 72 bp GCGGCTGCGAGGTCCTGGCAGGCTGATCCGGAGATCTaGCACCTCTTCAGCCTCAGGTTCTGCAGCTTGCAG +
Preference number: 6 (lower is better)
Translates to: AAARSWQADPEI*HLFSLRFCSLQ
Trigger: CTGCAAGCTGCAGAACCTGAGGCTGAAGAGGTGTCAGATCTCCGGATCAGCCTGCCAGGACCTCGCAGCCGC
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CAA 90 bp CTCAGGCCTTCCCCCAGCAGCTGCAGGCCCCTGTCTCCCAAGTCATaGAAGCTCAGGTCCAGCTCTTGGAGGCATGTGTTGACCTGGAGC +
Preference number: 6 (lower is better)
Translates to: LRPSPSSCRPLSPKS*KLRSSSWRHVLTWS
Trigger: GCTCCAGGTCAACACATGCCTCCAAGAGCTGGACCTGAGCTTCAATGACTTGGGAGACAGGGGCCTGCAGCTGCTGGGGGAAGGCCTGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS GCA 72 bp GCAGCCTCCAACAGACACTTCCTCAGCTGGATCATCTaGAGCCTACACCTGGGGTGCTGCAGCCCCTCACAG +
Preference number: 6 (lower is better)
Translates to: AASNRHFLSWII*SLHLGCCSPSQ
Trigger: CTGTGAGGGGCTGCAGCACCCCAGGTGTAGGCTGCAGATGATCCAGCTGAGGAAGTGTCTGTTGGAGGCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CCA 72 bp CTCTGCAGCCAGAGAGACCAGGCCTCTCTGGTTGGCTaGGACTTTGAAGGTTGGAGTCCCTGGCTTGGGCTG +
Preference number: 6 (lower is better)
Translates to: LCSQRDQASLVG*DFEGWSPWLGL
Trigger: CAGCCCAAGCCAGGGACTCCAACCTTCAAAGTCCCAGCCAACCAGAGAGGCCTGGTCTCTCTGGCTGCAGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CCA 72 bp GACCAGGCCTCTCTGGTTGGCTGGGACTTTGAAGGTTaGAGTCCCTGGCTTGGGCTGCATCAGGCTCAGAAG +
Preference number: 6 (lower is better)
Translates to: DQASLVGWDFEG*SPWLGLHQAQK
Trigger: CTTCTGAGCCTGATGCAGCCCAAGCCAGGGACTCCAACCTTCAAAGTCCCAGCCAACCAGAGAGGCCTGGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CAA 90 bp CTTCAGCCTCAGGTTCTGCAGCTTGCAGCTGGCATGTCGGAGGCCTaGACAGAGCAGCCTTACACCCTGGCTGCCCAAGGCATTTCGGTA +
Preference number: 6 (lower is better)
Translates to: LQPQVLQLAAGMSEA*TEQPYTLAAQGISV
Trigger: TACCGAAATGCCTTGGGCAGCCAGGGTGTAAGGCTGCTCTGTCAAGGCCTCCGACATGCCAGCTGCAAGCTGCAGAACCTGAGGCTGAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CAA 90 bp TCTCCCAAGTCATTGAAGCTCAGGTCCAGCTCTTGGAGGCATGTGTaGACCTGGAGCACACTGGCGATCCCCACACACGCGACTGAGCCC +
Preference number: 6 (lower is better)
Translates to: SPKSLKLRSSSWRHV*TWSTLAIPTHATEP
Trigger: GGGCTCAGTCGCGTGTGTGGGGATCGCCAGTGTGCTCCAGGTCAACACATGCCTCCAAGAGCTGGACCTGAGCTTCAATGACTTGGGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CAA 90 bp CTGCAGGCCCCTGTCTCCCAAGTCATTGAAGCTCAGGTCCAGCTCTaGGAGGCATGTGTTGACCTGGAGCACACTGGCGATCCCCACACA +
Preference number: 6 (lower is better)
Translates to: LQAPVSQVIEAQVQL*EACVDLEHTGDPHT
Trigger: TGTGTGGGGATCGCCAGTGTGCTCCAGGTCAACACATGCCTCCAAGAGCTGGACCTGAGCTTCAATGACTTGGGAGACAGGGGCCTGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CAA 90 bp TGGTGGCTCGGGGCGTTCTTCGTCTGGCTCAAAGAGGGTCTCCATTaGGATAGGACTAGTCTGGTGACGCCTGGTTCTGGAGCGTTCCCA +
Preference number: 6 (lower is better)
Translates to: WWLGAFFVWLKEGLH*DRTSLVTPGSGAFP
Trigger: TGGGAACGCTCCAGAACCAGGCGTCACCAGACTAGTCCTATCCAAATGGAGACCCTCTTTGAGCCAGACGAAGAACGCCCCGAGCCACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS GCA 72 bp AGATCTGACACCTCTTCAGCCTCAGGTTCTGCAGCTTaGAGCTGGCATGTCGGAGGCCTTGACAGAGCAGCC +
Preference number: 6 (lower is better)
Translates to: RSDTSSASGSAA*SWHVGGLDRAA
Trigger: GGCTGCTCTGTCAAGGCCTCCGACATGCCAGCTGCAAGCTGCAGAACCTGAGGCTGAAGAGGTGTCAGATCT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS GCA 72 bp TCAGGTCCATCCCAAACAGCCACAGGACTCGAAGCTTaGAGCCTGGATGCCTCAGCCTCTTGCACAGCAGAC +
Preference number: 6 (lower is better)
Translates to: SGPSQTATGLEA*SLDASASCTAD
Trigger: GTCTGCTGTGCAAGAGGCTGAGGCATCCAGGCTGCAAGCTTCGAGTCCTGTGGCTGTTTGGGATGGACCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CCA 72 bp GTAGAGGCCAGATCTTCGCAGGAAGCTTGTCCAAGGTaGCAGATCTTCAGCCACAGGGTACGCAGCCTGCAG +
Preference number: 6 (lower is better)
Translates to: VEARSSQEACPR*QIFSHRVRSLQ
Trigger: CTGCAGGCTGCGTACCCTGTGGCTGAAGATCTGCCACCTTGGACAAGCTTCCTGCGAAGATCTGGCCTCTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CCA 72 bp CATCCCAAACAGCCACAGGACTCGAAGCTTGCAGCCTaGATGCCTCAGCCTCTTGCACAGCAGACAGACACC +
Preference number: 6 (lower is better)
Translates to: HPKQPQDSKLAA*MPQPLAQQTDT
Trigger: GGTGTCTGTCTGCTGTGCAAGAGGCTGAGGCATCCAGGCTGCAAGCTTCGAGTCCTGTGGCTGTTTGGGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CAA 72 bp TCATTGAAGCTCAGGTCCAGCTCTTGGAGGCATGTGTaGACCTGGAGCACACTGGCGATCCCCACACACGCG +
Preference number: 6 (lower is better)
Translates to: SLKLRSSSWRHV*TWSTLAIPTHA
Trigger: CGCGTGTGTGGGGATCGCCAGTGTGCTCCAGGTCAACACATGCCTCCAAGAGCTGGACCTGAGCTTCAATGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS TCA 72 bp CCCACAGGTCCTTCCTGTGAATCCTCTGAAAGGTGCTaGGAGCCAGAAGCCAAGCCTCCCTTGTCCCCATGT +
Preference number: 6 (lower is better)
Translates to: PTGPSCESSERC*EPEAKPPLSPC
Trigger: ACATGGGGACAAGGGAGGCTTGGCTTCTGGCTCTCAGCACCTTTCAGAGGATTCACAGGAAGGACCTGTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS TCA 72 bp CGAGGGATATACCACGCTCCGGCCAGCAGCTGGAGATaGGGTCTTGTACACTGCACTGGGTGTGGCTTCTAT +
Preference number: 6 (lower is better)
Translates to: RGIYHAPASSWR*GLVHCTGCGFY
Trigger: ATAGAAGCCACACCCAGTGCAGTGTACAAGACCTCATCTCCAGCTGCTGGCCGGAGCGTGGTATATCCCTCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CAA 72 bp TTCAGGTCCATCCCAAACAGCCACAGGACTCGAAGCTaGCAGCCTGGATGCCTCAGCCTCTTGCACAGCAGA +
Preference number: 6 (lower is better)
Translates to: FRSIPNSHRTRS*QPGCLSLLHSR
Trigger: TCTGCTGTGCAAGAGGCTGAGGCATCCAGGCTGCAAGCTTCGAGTCCTGTGGCTGTTTGGGATGGACCTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CAA 90 bp TTCGAGGGATATACCACGCTCCGGCCAGCAGCTGGAGATGAGGTCTaGTACACTGCACTGGGTGTGGCTTCTATTCAACTCCCTGCAGCT +
Preference number: 6 (lower is better)
Translates to: FEGYTTLRPAAGDEV*YTALGVASIQLPAA
Trigger: AGCTGCAGGGAGTTGAATAGAAGCCACACCCAGTGCAGTGTACAAGACCTCATCTCCAGCTGCTGGCCGGAGCGTGGTATATCCCTCGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CAA 90 bp CAGAAGCAACCTCCGAATCAGACTTCCGAGGAGGACTTCAGTAGGTaGTTTCTCCTCCCAGCAGAGGCACCAGGGACCCTGAGCATCATG +
Preference number: 6 (lower is better)
Translates to: QKQPPNQTSEEDFSR*FLLPAEAPGTLSIM
Trigger: CATGATGCTCAGGGTCCCTGGTGCCTCTGCTGGGAGGAGAAACAACCTACTGAAGTCCTCCTCGGAAGTCTGATTCGGAGGTTGCTTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CAA 90 bp AGGATAGAAGAAAGGTCCTCACATGCTTTGGAGGTGAGTCCGCAGTaGTCCAGCCACAGCTTCTGGAGTCTGCAGGTCTGGTGCCTCAGG +
Preference number: 6 (lower is better)
Translates to: RIEERSSHALEVSPQ*SSHSFWSLQVWCLR
Trigger: CCTGAGGCACCAGACCTGCAGACTCCAGAAGCTGTGGCTGGACAACTGCGGACTCACCTCCAAAGCATGTGAGGACCTTTCTTCTATCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS GCA 72 bp GGTGGAGCCTTCACTCCCAGCCTTGTTTTGGATCCATaGCAACACTTCCTCCTTCACCTGAGGGGAGATGCT +
Preference number: 6 (lower is better)
Translates to: GGAFTPSLVLDP*QHFLLHLRGDA
Trigger: AGCATCTCCCCTCAGGTGAAGGAGGAAGTGTTGGCATGGATCCAAAACAAGGCTGGGAGTGAAGGCTCCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS GCA 72 bp GTTGTTGCTGAGAACAGAAGCCAGGGATCGGCCAGCTaGAGCCTCCAACAGACACTTCCTCAGCTGGATCAT +
Preference number: 6 (lower is better)
Translates to: VVAENRSQGSAS*SLQQTLPQLDH
Trigger: ATGATCCAGCTGAGGAAGTGTCTGTTGGAGGCTGCAGCTGGCCGATCCCTGGCTTCTGTTCTCAGCAACAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CCA 72 bp GCAAATGCCCAACCGAAGGGTCTGGAGTTTGCAATCTaGATGACTGAGGCCTTCACACAGCAGAAGCACCCC +
Preference number: 6 (lower is better)
Translates to: ANAQPKGLEFAI*MTEAFTQQKHP
Trigger: GGGGTGCTTCTGCTGTGTGAAGGCCTCAGTCATCCAGATTGCAAACTCCAGACCCTTCGGTTGGGCATTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CCA 72 bp CTGTCTCCCAAGTCATTGAAGCTCAGGTCCAGCTCTTaGAGGCATGTGTTGACCTGGAGCACACTGGCGATC +
Preference number: 6 (lower is better)
Translates to: LSPKSLKLRSSS*RHVLTWSTLAI
Trigger: GATCGCCAGTGTGCTCCAGGTCAACACATGCCTCCAAGAGCTGGACCTGAGCTTCAATGACTTGGGAGACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CAA 72 bp CCTGTCTCCCAAGTCATTGAAGCTCAGGTCCAGCTCTaGGAGGCATGTGTTGACCTGGAGCACACTGGCGAT +
Preference number: 6 (lower is better)
Translates to: PVSQVIEAQVQL*EACVDLEHTGD
Trigger: ATCGCCAGTGTGCTCCAGGTCAACACATGCCTCCAAGAGCTGGACCTGAGCTTCAATGACTTGGGAGACAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CAA 90 bp AGGGTCTGGCTGATTCCCAGGATAGAAGAAAGGTCCTCACATGCTTaGGAGGTGAGTCCGCAGTTGTCCAGCCACAGCTTCTGGAGTCTG +
Preference number: 6 (lower is better)
Translates to: RVWLIPRIEERSSHA*EVSPQLSSHSFWSL
Trigger: CAGACTCCAGAAGCTGTGGCTGGACAACTGCGGACTCACCTCCAAAGCATGTGAGGACCTTTCTTCTATCCTGGGAATCAGCCAGACCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS TCA 72 bp CCAACCGAAGGGTCTGGAGTTTGCAATCTGGATGACTaGGGCCTTCACACAGCAGAAGCACCCCAGAATCTC +
Preference number: 6 (lower is better)
Translates to: PTEGSGVCNLDD*GLHTAEAPQNL
Trigger: GAGATTCTGGGGTGCTTCTGCTGTGTGAAGGCCTCAGTCATCCAGATTGCAAACTCCAGACCCTTCGGTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS GCA 72 bp AAGCCATCAATGATGAATAGGAGACGGTCAGGAGCCTaGATGAGGTCTTCGAGGGATATACCACGCTCCGGC +
Preference number: 6 (lower is better)
Translates to: KPSMMNRRRSGA*MRSSRDIPRSG
Trigger: GCCGGAGCGTGGTATATCCCTCGAAGACCTCATGCAGGCTCCTGACCGTCTCCTATTCATCATTGATGGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS GCA 72 bp AAAGCTCCCCACTTTCCAGCTGCTGCTTTAGGCAGGTaGAGACCACCCAGGACACCATGGGAACAAAACACA +
Preference number: 6 (lower is better)
Translates to: KAPHFPAAALGR*RPPRTPWEQNT
Trigger: TGTGTTTTGTTCCCATGGTGTCCTGGGTGGTCTGCACCTGCCTAAAGCAGCAGCTGGAAAGTGGGGAGCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS GCA 72 bp GGTGTTTGTCTTAAAAGCTCCCCACTTTCCAGCTGCTaGTTTAGGCAGGTGCAGACCACCCAGGACACCATG +
Preference number: 6 (lower is better)
Translates to: GVCLKSSPLSSC*FRQVQTTQDTM
Trigger: CATGGTGTCCTGGGTGGTCTGCACCTGCCTAAAGCAGCAGCTGGAAAGTGGGGAGCTTTTAAGACAAACACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS GCA 72 bp TCCATGCCAACACTTCCTCCTTCACCTGAGGGGAGATaGTCCAGCCGAGATTCCTCTCAAGGTAGCATCTCA +
Preference number: 6 (lower is better)
Translates to: SMPTLPPSPEGR*SSRDSSQGSIS
Trigger: TGAGATGCTACCTTGAGAGGAATCTCGGCTGGAGCATCTCCCCTCAGGTGAAGGAGGAAGTGTTGGCATGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS GCA 72 bp CTGGCTGATTCCCAGGATAGAAGAAAGGTCCTCACATaGTTTGGAGGTGAGTCCGCAGTTGTCCAGCCACAG +
Preference number: 6 (lower is better)
Translates to: LADSQDRRKVLT*FGGESAVVQPQ
Trigger: CTGTGGCTGGACAACTGCGGACTCACCTCCAAAGCATGTGAGGACCTTTCTTCTATCCTGGGAATCAGCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CCA 72 bp TACCACTGTGTGTGGTGGCTCGGGGCGTTCTTCGTCTaGCTCAAAGAGGGTCTCCATTTGGATAGGACTAGT +
Preference number: 6 (lower is better)
Translates to: YHCVWWLGAFFV*LKEGLHLDRTS
Trigger: ACTAGTCCTATCCAAATGGAGACCCTCTTTGAGCCAGACGAAGAACGCCCCGAGCCACCACACACAGTGGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CAA 72 bp TATACCACGCTCCGGCCAGCAGCTGGAGATGAGGTCTaGTACACTGCACTGGGTGTGGCTTCTATTCAACTC +
Preference number: 6 (lower is better)
Translates to: YTTLRPAAGDEV*YTALGVASIQL
Trigger: GAGTTGAATAGAAGCCACACCCAGTGCAGTGTACAAGACCTCATCTCCAGCTGCTGGCCGGAGCGTGGTATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CAA 90 bp TCCAAGGGGTTTCCTGTCAGATCCAGTTCTACCAGATATGAGTTGTaGCTGAGAACAGAAGCCAGGGATCGGCCAGCTGCAGCCTCCAAC +
Preference number: 6 (lower is better)
Translates to: SKGFPVRSSSTRYEL*LRTEARDRPAAASN
Trigger: GTTGGAGGCTGCAGCTGGCCGATCCCTGGCTTCTGTTCTCAGCAACAACTCATATCTGGTAGAACTGGATCTGACAGGAAACCCCTTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CAA 90 bp TCTTCCAAGGGGTTTCCTGTCAGATCCAGTTCTACCAGATATGAGTaGTTGCTGAGAACAGAAGCCAGGGATCGGCCAGCTGCAGCCTCC +
Preference number: 6 (lower is better)
Translates to: SSKGFPVRSSSTRYE*LLRTEARDRPAAAS
Trigger: GGAGGCTGCAGCTGGCCGATCCCTGGCTTCTGTTCTCAGCAACAACTCATATCTGGTAGAACTGGATCTGACAGGAAACCCCTTGGAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CAA 90 bp AGATCATTCAGACCCAGGTCCAGCTCCAGCAGGCTCTGGTTCATTTaGAGAGTAGAGGCCAGATCTTCGCAGGAAGCTTGTCCAAGGTGG +
Preference number: 6 (lower is better)
Translates to: RSFRPRSSSSRLWFI*RVEARSSQEACPRW
Trigger: CCACCTTGGACAAGCTTCCTGCGAAGATCTGGCCTCTACTCTCAAAATGAACCAGAGCCTGCTGGAGCTGGACCTGGGTCTGAATGATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CAA 90 bp GTCTTTTTATTCAGGTCCATCCCAAACAGCCACAGGACTCGAAGCTaGCAGCCTGGATGCCTCAGCCTCTTGCACAGCAGACAGACACCT +
Preference number: 6 (lower is better)
Translates to: VFLFRSIPNSHRTRS*QPGCLSLLHSRQTP
Trigger: AGGTGTCTGTCTGCTGTGCAAGAGGCTGAGGCATCCAGGCTGCAAGCTTCGAGTCCTGTGGCTGTTTGGGATGGACCTGAATAAAAAGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS TCA 72 bp TTGTTTTGGATCCATGCCAACACTTCCTCCTTCACCTaGGGGGAGATGCTCCAGCCGAGATTCCTCTCAAGG +
Preference number: 6 (lower is better)
Translates to: LFWIHANTSSFT*GEMLQPRFLSR
Trigger: CCTTGAGAGGAATCTCGGCTGGAGCATCTCCCCTCAGGTGAAGGAGGAAGTGTTGGCATGGATCCAAAACAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS GCA 72 bp TCTGGACTCCTGAAGGTTCTGGTGGGTCGTCCTCCATaGCTGTACTATAAGCACTCCCATGCAAGTGAAGCA +
Preference number: 6 (lower is better)
Translates to: SGLLKVLVGRPP*LYYKHSHASEA
Trigger: TGCTTCACTTGCATGGGAGTGCTTATAGTACAGGCATGGAGGACGACCCACCAGAACCTTCAGGAGTCCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CCA 72 bp AGATCATTCAGACCCAGGTCCAGCTCCAGCAGGCTCTaGTTCATTTTGAGAGTAGAGGCCAGATCTTCGCAG +
Preference number: 6 (lower is better)
Translates to: RSFRPRSSSSRL*FILRVEARSSQ
Trigger: CTGCGAAGATCTGGCCTCTACTCTCAAAATGAACCAGAGCCTGCTGGAGCTGGACCTGGGTCTGAATGATCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CAA 72 bp CTGATTCCCAGGATAGAAGAAAGGTCCTCACATGCTTaGGAGGTGAGTCCGCAGTTGTCCAGCCACAGCTTC +
Preference number: 6 (lower is better)
Translates to: LIPRIEERSSHA*EVSPQLSSHSF
Trigger: GAAGCTGTGGCTGGACAACTGCGGACTCACCTCCAAAGCATGTGAGGACCTTTCTTCTATCCTGGGAATCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS TCA 72 bp ATTGGCTCTCAAAAAGGCATAGACCATTATTTGGAGTaGCCCTCACCAGGTCTTCTCCCTGTCCTCGCTCCC +
Preference number: 6 (lower is better)
Translates to: IGSQKGIDHYLE*PSPGLLPVLAP
Trigger: GGGAGCGAGGACAGGGAGAAGACCTGGTGAGGGTCACTCCAAATAATGGTCTATGCCTTTTTGAGAGCCAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS TCA 72 bp TCAAAGAGGGTCTCCATTTGGATAGGACTAGTCTGGTaGCGCCTGGTTCTGGAGCGTTCCCACTCTACATCT +
Preference number: 6 (lower is better)
Translates to: SKRVSIWIGLVW*RLVLERSHSTS
Trigger: AGATGTAGAGTGGGAACGCTCCAGAACCAGGCGTCACCAGACTAGTCCTATCCAAATGGAGACCCTCTTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS TCA 72 bp CAAGGGGTTTCCTGTCAGATCCAGTTCTACCAGATATaGGTTGTTGCTGAGAACAGAAGCCAGGGATCGGCC +
Preference number: 6 (lower is better)
Translates to: QGVSCQIQFYQI*VVAENRSQGSA
Trigger: GGCCGATCCCTGGCTTCTGTTCTCAGCAACAACTCATATCTGGTAGAACTGGATCTGACAGGAAACCCCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CCA 72 bp CCAAGGCATTTCGGTATAAGGCCAGCTCGATCAGGTTaGAGTTGGTACAGACAGCTGCTGAAAGGTATGCAC +
Preference number: 6 (lower is better)
Translates to: PRHFGIRPARSG*SWYRQLLKGMH
Trigger: GTGCATACCTTTCAGCAGCTGTCTGTACCAACTCCAACCTGATCGAGCTGGCCTTATACCGAAATGCCTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CCA 72 bp AGACATCAGGCAGCATGTTCCTTTCCTGTAAGTATGTaGACTGAGTCTGGACTCCTGAAGGTTCTGGTGGGT +
Preference number: 6 (lower is better)
Translates to: RHQAACSFPVSM*TESGLLKVLVG
Trigger: ACCCACCAGAACCTTCAGGAGTCCAGACTCAGTCCACATACTTACAGGAAAGGAACATGCTGCCTGATGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS TCA 72 bp TACGGTTTTGTGACTCGAAGTGCTGCCATCCTCCTGTaGGTCTTTTTATTCAGGTCCATCCCAAACAGCCAC +
Preference number: 6 (lower is better)
Translates to: YGFVTRSAAILL*VFLFRSIPNSH
Trigger: GTGGCTGTTTGGGATGGACCTGAATAAAAAGACTCACAGGAGGATGGCAGCACTTCGAGTCACAAAACCGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS GCA 72 bp AAGCACTCCCATGCAAGTGAAGCACTTCTGTACTTCTaGAATACCTCGCACAAAACGAGCAGACCATGTGCT +
Preference number: 6 (lower is better)
Translates to: KHSHASEALLYF*NTSHKTSRPCA
Trigger: AGCACATGGTCTGCTCGTTTTGTGCGAGGTATTGCAGAAGTACAGAAGTGCTTCACTTGCATGGGAGTGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CCA 72 bp GGAGCATTGGGAGAGACATCCAAAGGGCACGCTGATTaGCTCTCAAAAAGGCATAGACCATTATTTGGAGTG +
Preference number: 6 (lower is better)
Translates to: GALGETSKGHAD*LSKRHRPLFGV
Trigger: CACTCCAAATAATGGTCTATGCCTTTTTGAGAGCCAATCAGCGTGCCCTTTGGATGTCTCTCCCAATGCTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CCA 72 bp CATCTCATCTCTTCGTTGAGGAGGCCAAACAGAAAGTaGACCGTGAGGGCCAAGAAGTTCCTTTCCGAAAAA +
Preference number: 6 (lower is better)
Translates to: HLISSLRRPNRK*TVRAKKFLSEK
Trigger: TTTTTCGGAAAGGAACTTCTTGGCCCTCACGGTCCACTTTCTGTTTGGCCTCCTCAACGAAGAGATGAGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CAA 72 bp CGATTGCTCAGGTTCACACATTCGCCTAATCGTGCATaGCGGTCTTCCATTAGCTGGAATTTCCTTCGGACA +
Preference number: 6 (lower is better)
Translates to: RLLRFTHSPNRA*RSSISWNFLRT
Trigger: TGTCCGAAGGAAATTCCAGCTAATGGAAGACCGCAATGCACGATTAGGCGAATGTGTGAACCTGAGCAATCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS GCA 72 bp CCCAATATCCAGGTACGGTTTTGTGACTCGAAGTGCTaGCATCCTCCTGTGAGTCTTTTTATTCAGGTCCAT +
Preference number: 6 (lower is better)
Translates to: PNIQVRFCDSKC*HPPVSLFIQVH
Trigger: ATGGACCTGAATAAAAAGACTCACAGGAGGATGGCAGCACTTCGAGTCACAAAACCGTACCTGGATATTGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS GCA 72 bp ACACCCAATATCCAGGTACGGTTTTGTGACTCGAAGTaGTGCCATCCTCCTGTGAGTCTTTTTATTCAGGTC +
Preference number: 6 (lower is better)
Translates to: TPNIQVRFCDSK*CHPPVSLFIQV
Trigger: GACCTGAATAAAAAGACTCACAGGAGGATGGCAGCACTTCGAGTCACAAAACCGTACCTGGATATTGGGTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CCA 72 bp CTTTGTAGGTTGTCTGTAGATCTTTTCTTGGAGCATTaGGAGAGACATCCAAAGGGCACGCTGATTGGCTCT +
Preference number: 6 (lower is better)
Translates to: LCRLSVDLFLEH*ERHPKGTLIGS
Trigger: AGAGCCAATCAGCGTGCCCTTTGGATGTCTCTCCCAATGCTCCAAGAAAAGATCTACAGACAACCTACAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CAA 72 bp GGACATAGTCTTTGTAGGTTGTCTGTAGATCTTTTCTaGGAGCATTGGGAGAGACATCCAAAGGGCACGCTG +
Preference number: 6 (lower is better)
Translates to: GHSLCRLSVDLF*EHWERHPKGTL
Trigger: CAGCGTGCCCTTTGGATGTCTCTCCCAATGCTCCAAGAAAAGATCTACAGACAACCTACAAAGACTATGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CAA 72 bp GGGGCTCATAGTCCATCAAGAAGCTTAACACCCGGCTaGCTTGTCCAGTGTTGTGGAAATATCTGTAGAAAT +
Preference number: 6 (lower is better)
Translates to: GAHSPSRSLTPG*LVQCCGNICRN
Trigger: ATTTCTACAGATATTTCCACAACACTGGACAAGCAAGCCGGGTGTTAAGCTTCTTGATGGACTATGAGCCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CAA 72 bp TTCTCACATTTGATACCCTTCTGGAATATGTTCACGTaGAGGAAAGTGGACACATCTGCTCCATCTAGGCCG +
Preference number: 6 (lower is better)
Translates to: FSHLIPFWNMFT*RKVDTSAPSRP
Trigger: CGGCCTAGATGGAGCAGATGTGTCCACTTTCCTCAACGTGAACATATTCCAGAAGGGTATCAAATGTGAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CAA 90 bp GGTCTTCCATTAGCTGGAATTTCCTTCGGACATAGTCTTTGTAGGTaGTCTGTAGATCTTTTCTTGGAGCATTGGGAGAGACATCCAAAG +
Preference number: 6 (lower is better)
Translates to: GLPLAGISFGHSLCR*SVDLFLEHWERHPK
Trigger: CTTTGGATGTCTCTCCCAATGCTCCAAGAAAAGATCTACAGACAACCTACAAAGACTATGTCCGAAGGAAATTCCAGCTAATGGAAGACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4
CDS CAA 72 bp TTAGCTGGAATTTCCTTCGGACATAGTCTTTGTAGGTaGTCTGTAGATCTTTTCTTGGAGCATTGGGAGAGA +
Preference number: 6 (lower is better)
Translates to: LAGISFGHSLCR*SVDLFLEHWER
Trigger: TCTCTCCCAATGCTCCAAGAAAAGATCTACAGACAACCTACAAAGACTATGTCCGAAGGAAATTCCAGCTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108653.4