RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NLRC3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000049871

Ensembl transcript IDs: ENSMUST00000177551.2, ENSMUST00000180200.8, ENSMUST00000229884.2

Found 397 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGGTGCCAGCCATGGGAGTGTGCAGGGCAGGAACACTACAGAGACTaGTGGTGCCAGCCATGGGAGTGTGCAGGGCAGGAACACTGCAGA +
Preference number: 1 (lower is better)
Translates to: WCQPWECAGQEHYRD*WCQPWECAGQEHCR
Trigger: TCTGCAGTGTTCCTGCCCTGCACACTCCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCCATGGCTGGCACCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR TCA 90 bp TGGTGCCAGCCATGGGAGTGTGCAGGGCAGGAACACTACAGAGACTaGTGGTGCCAGCCATGTGAGTGTGCAGGGCAGGAACACTGCAGA +
Preference number: 1 (lower is better)
Translates to: WCQPWECAGQEHYRD*WCQPCECAGQEHCR
Trigger: TCTGCAGTGTTCCTGCCCTGCACACTCACATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCCATGGCTGGCACCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR TCA 90 bp TGGTGCCAGCCATGGGAGTGTGCAGGGCAGGAACACTACAGAGACTaGTGGTGCCAGCCATGGGAGTGTGCAGGGCAGGAACACTACAGA +
Preference number: 1 (lower is better)
Translates to: WCQPWECAGQEHYRD*WCQPWECAGQEHYR
Trigger: TCTGTAGTGTTCCTGCCCTGCACACTCCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCCATGGCTGGCACCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR GCA 90 bp AGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGGGAGTGTaGAGGGCAGGAACACTGCAGAGACTGATGGTGCCAGCCATGGGA +
Preference number: 1 (lower is better)
Translates to: RAGTLQRLMVPAMGV*RAGTLQRLMVPAMG
Trigger: TCCCATGGCTGGCACCATCAGTCTCTGCAGTGTTCCTGCCCTGCACACTCCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR GCA 90 bp AGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGGGAGTGTaGAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGGGA +
Preference number: 1 (lower is better)
Translates to: RAGTLQRLMVPAMGV*RAGTLQRLMVPAMG
Trigger: TCCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR TCA 90 bp GTGTGCAGGGCAGGAACACTACAGAGACTGATGGTAACATCCGTGTaGGTGTGCAGGGCAGGAACACTGCAGAGACTGATGGTGCCAGCC +
Preference number: 1 (lower is better)
Translates to: VCRAGTLQRLMVTSV*VCRAGTLQRLMVPA
Trigger: GGCTGGCACCATCAGTCTCTGCAGTGTTCCTGCCCTGCACACTCACACGGATGTTACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR TCA 90 bp TGGTGCCAGCTGTATGAGTGTGCAGGGCAGGAACACTACAGAGACTaGTGGTGCCAGCCATGGGAGTGTGCAGGGCAGGAACACTACAGA +
Preference number: 1 (lower is better)
Translates to: WCQLYECAGQEHYRD*WCQPWECAGQEHYR
Trigger: TCTGTAGTGTTCCTGCCCTGCACACTCCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCATACAGCTGGCACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR TCA 90 bp GCCAGGACCAACCTCCTACTTTGTGGAGCTTTGAGACTTTGCTCCTaGGTGCCAGACCCTGGTGGCAGACCCTTCCCTTCTTCATCCCAA +
Preference number: 1 (lower is better)
Translates to: ARTNLLLCGALRLCS*VPDPGGRPFPSSSQ
Trigger: TTGGGATGAAGAAGGGAAGGGTCTGCCACCAGGGTCTGGCACTCAGGAGCAAAGTCTCAAAGCTCCACAAAGTAGGAGGTTGGTCCTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR TCA 90 bp GTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGACATCCATGTaGGTGTGCAGGGCAGGAACACTGCAGAGACTGATGGTGCCAACC +
Preference number: 1 (lower is better)
Translates to: VCRAGTLQRLMVTSM*VCRAGTLQRLMVPT
Trigger: GGTTGGCACCATCAGTCTCTGCAGTGTTCCTGCCCTGCACACTCACATGGATGTCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR TCA 90 bp AATAGCCATTTTCCTTTGGCTGACCCTGGGCAGGCAAGATGCCTGTaGACTCTGCTGGAGCGCCTTCCCCTCCTGTTGAGAGCAGCTTTA +
Preference number: 1 (lower is better)
Translates to: NSHFPLADPGQARCL*TLLERLPLLLRAAL
Trigger: TAAAGCTGCTCTCAACAGGAGGGGAAGGCGCTCCAGCAGAGTTCACAGGCATCTTGCCTGCCCAGGGTCAGCCAAAGGAAAATGGCTATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR CCA 90 bp GCAGACCCTTCCCTTCTTCATCCCAAAACAATAGCCATTTTCCTTTaGCTGACCCTGGGCAGGCAAGATGCCTGTGAACTCTGCTGGAGC +
Preference number: 1 (lower is better)
Translates to: ADPSLLHPKTIAIFL*LTLGRQDACELCWS
Trigger: GCTCCAGCAGAGTTCACAGGCATCTTGCCTGCCCAGGGTCAGCCAAAGGAAAATGGCTATTGTTTTGGGATGAAGAAGGGAAGGGTCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR TCA 90 bp ATCTCGTTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTaGACTCCTGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACT +
Preference number: 1 (lower is better)
Translates to: ISLWMVVSHHVVAGI*TPDLRKSSRVLLPT
Trigger: AGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCAGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAACGAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR TCA 90 bp TCAGACACTCCAGAAGAGGGAGTCAGATCTCGTTATGGATGGTTGTaGGCCACCATGTGGTTGCTGGGATTTGAACTCCTGACCTTCGGA +
Preference number: 1 (lower is better)
Translates to: SDTPEEGVRSRYGWL*ATMWLLGFELLTFG
Trigger: TCCGAAGGTCAGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAACGAGATCTGACTCCCTCTTCTGGAGTGTCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR GCA 90 bp ATTGTCACCTTTGGGCAAGTTAATGTGCTTAGTGGGCTTGAAGTCTaGAGAGACTGGTGCCAGCTGTATGAGTGTGCAGGGCAGGAACAC +
Preference number: 1 (lower is better)
Translates to: IVTFGQVNVLSGLEV*RDWCQLYECAGQEH
Trigger: GTGTTCCTGCCCTGCACACTCATACAGCTGGCACCAGTCTCTGCAGACTTCAAGCCCACTAAGCACATTAACTTGCCCAAAGGTGACAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR TCA 90 bp TTGTCTTATGTTCTTTTGAGTTGGGTCATGTGGAGACCCTGGGGATaGGTAAGCCAGGACCAACCTCCTACTTTGTGGAGCTTTGAGACT +
Preference number: 1 (lower is better)
Translates to: LSYVLLSWVMWRPWG*VSQDQPPTLWSFET
Trigger: AGTCTCAAAGCTCCACAAAGTAGGAGGTTGGTCCTGGCTTACTCATCCCCAGGGTCTCCACATGACCCAACTCAAAAGAACATAAGACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR TCA 90 bp ACTGGTCTTGAATTCACTATGTGTCCAAAGACAACCTTGAACTACTaGTCCTCCTGCCTCCACCAAGTGCTGGGATTACAGGCTATTCTT +
Preference number: 1 (lower is better)
Translates to: TGLEFTMCPKTTLNY*SSCLHQVLGLQAIL
Trigger: AAGAATAGCCTGTAATCCCAGCACTTGGTGGAGGCAGGAGGATCAGTAGTTCAAGGTTGTCTTTGGACACATAGTGAATTCAAGACCAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180200.8
3UTR CCA 90 bp CTGATCCTCCTGCCTCCACCAAGTGCTGGGATTACAGGCTATTCTTaGCTTAAATCTAATCTCTTTGTCAAGGCTGCATTTGTCTCGTTA +
Preference number: 1 (lower is better)
Translates to: LILLPPPSAGITGYS*LKSNLFVKAAFVSL
Trigger: TAACGAGACAAATGCAGCCTTGACAAAGAGATTAGATTTAAGCCAAGAATAGCCTGTAATCCCAGCACTTGGTGGAGGCAGGAGGATCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180200.8
3UTR GCA 90 bp AGTTCGCCTAGGTTTTCTTGTTTCAGTCAGACAATGGAAGAAATTTaGCACAGGGAAGCACAGCTTATTTCCTCCATGGGGAAAGCTACA +
Preference number: 1 (lower is better)
Translates to: SSPRFSCFSQTMEEI*HREAQLISSMGKAT
Trigger: TGTAGCTTTCCCCATGGAGGAAATAAGCTGTGCTTCCCTGTGGCAAATTTCTTCCATTGTCTGACTGAAACAAGAAAACCTAGGCGAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR CCA 90 bp CTTAGTGCCTTAGTTCGCCTAGGTTTTCTTGTTTCAGTCAGACAATaGAAGAAATTTGCCACAGGGAAGCACAGCTTATTTCCTCCATGG +
Preference number: 1 (lower is better)
Translates to: LSALVRLGFLVSVRQ*KKFATGKHSLFPPW
Trigger: CCATGGAGGAAATAAGCTGTGCTTCCCTGTGGCAAATTTCTTCCATTGTCTGACTGAAACAAGAAAACCTAGGCGAACTAAGGCACTAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR GCA 90 bp AGTGTGCAGGGCAGGAACACTGCAGAGACTCATGGTGCCAGCCATGGGAGTGTGGATGCCTGTGAACTCTaGTGGAGCGCCTTCCCCTCC +
Preference number: 2 (lower is better)
Translates to: SVQGRNTAETHGASHGSVDACEL*WSAFPS
Trigger: GGAGGGGAAGGCGCTCCAGCAGAGTTCACAGGCATC...CACACTCCCATGGCTGGCACCATGAGTCTCTGCAGTGTTCCTGCCCTGCACACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR TCA 90 bp CCATGTGAGTGTGCAGGGCAGGAACACTGCAGAGACTCATGGTGCCAGCCATGGCAGGCAAGATGCCTGTaGACTCTGCTGGAGCGCCTT +
Preference number: 2 (lower is better)
Translates to: PCECAGQEHCRDSWCQPWQARCL*TLLERL
Trigger: AAGGCGCTCCAGCAGAGTTCACAGGCATCTTGCCTG...CCATGGCTGGCACCATGAGTCTCTGCAGTGTTCCTGCCCTGCACACTCACATGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR GCA 90 bp CCATGTGAGTGTGCAGGGCAGGAACACTGCAGAGACTCATGGTGCCAGCCATGGGACTTTGCTCCTGAGTaGCAGACCCTGGTGGCAGAC +
Preference number: 2 (lower is better)
Translates to: PCECAGQEHCRDSWCQPWDFAPE*QTLVAD
Trigger: GTCTGCCACCAGGGTCTGGCACTCAGGAGCAAAGTC...CCATGGCTGGCACCATGAGTCTCTGCAGTGTTCCTGCCCTGCACACTCACATGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR TCA 90 bp GGGAGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGGGAGTCCATTTTCCTTTGGCTaGCCCTGGGCAGGCAAGATG +
Preference number: 2 (lower is better)
Translates to: GSVQGRNTTETDGASHGSPFSFG*PWAGKM
Trigger: CATCTTGCCTGCCCAGGGTCAGCCAAAGGAAAATGG...ACTCCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR TCA 90 bp AGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGGGAGTGTGTTGAGACTTTGCTCCTaGGTGCCAGACCCTGGTGGC +
Preference number: 2 (lower is better)
Translates to: SVQGRNTTETDGASHGSVLRLCS*VPDPGG
Trigger: GCCACCAGGGTCTGGCACTCAGGAGCAAAGTCTCAA...CACACTCCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR CAA 90 bp GCAGCTTTAGAGCTGGCCCAGCAGCATCTCCGACTCCAGGAAGACTaGCAGAGAGCAGAGGTCTCTGAGAAGAAGCTTCTGGCTGAGTCT +
Preference number: 2 (lower is better)
Translates to: AALELAQQHLRLQED*QRAEVSEKKLLAES
Trigger: AGACTCAGCCAGAAGCTTCTTCTCAGAGACCTCTGCTCTCTGCAAGTCTTCCTGGAGTCGGAGATGCTGCTGGGCCAGCTCTAAAGCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR TCA 90 bp GATGGTGCCAGCCATGGGAGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGAACACTACAGAGACTaGTGGTGCCAGCCATGTGAG +
Preference number: 2 (lower is better)
Translates to: DGASHGSVQGRNTTETDGEHYRD*WCQPCE
Trigger: CTCACATGGCTGGCACCATCAGTCTCTGTAGTGTTC...ACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCCATGGCTGGCACCATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR GCA 90 bp AGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGGGAGTGTGGACTCCAGGAAGACTTaGAGAGAGCAGAGGTCTCTG +
Preference number: 2 (lower is better)
Translates to: SVQGRNTTETDGASHGSVDSRKT*REQRSL
Trigger: CAGAGACCTCTGCTCTCTGCAAGTCTTCCTGGAGTC...CACACTCCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR GCA 90 bp GGGAGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGTGAGTGACTCCAGGAAGACTTaGAGAGAGCAGAGGTCTCTG +
Preference number: 2 (lower is better)
Translates to: GSVQGRNTTETDGASHVSDSRKT*REQRSL
Trigger: CAGAGACCTCTGCTCTCTGCAAGTCTTCCTGGAGTC...ACTCACATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR CCA 90 bp AGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGGGAGTGTGCTGAGAAGAAGCTTCTaGCTGAGTCTGCATGGTCCT +
Preference number: 2 (lower is better)
Translates to: SVQGRNTTETDGASHGSVLRRSF*LSLHGP
Trigger: AGGACCATGCAGACTCAGCCAGAAGCTTCTTCTCAG...CACACTCCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR CCA 90 bp CTACTCCATCAGCGCTGTGTCTCTTGGTCACACGTGATGTTTGTTCACTTGTCCCTGCCTCCCAGGTGCTaGGATCAAAGGTGTGTGCCA +
Preference number: 2 (lower is better)
Translates to: LLHQRCVSWSHVMFVHLSLPPRC*DQRCVP
Trigger: TGGCACACACCTTTGATCCCAGCACCTGGGAGGCAG...GGACAAGTGAACAAACATCACGTGTGACCAAGAGACACAGCGCTGATGGAGTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180200.8
3UTR-3UTR TCA 90 bp GGTGCCAGCCATGTGAGTGTGCAGGGCAGGAACACTGTCATTATCTTGTCTTATCCATTTTCCTTTGGCTaGCCCTGGGCAGGCAAGATG +
Preference number: 2 (lower is better)
Translates to: GASHVSVQGRNTVIILSYPFSFG*PWAGKM
Trigger: CATCTTGCCTGCCCAGGGTCAGCCAAAGGAAAATGG...ATAAGACAAGATAATGACAGTGTTCCTGCCCTGCACACTCACATGGCTGGCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR GCA 90 bp GCACAGCTTATTTCCTCCATGGGGAAAGCTACAGCCACTGGAGAGGTTTTGAAAGCAGGGCAGGAACACTaGAGAGACTCATGGTGCCAG +
Preference number: 2 (lower is better)
Translates to: AQLISSMGKATATGEVLKAGQEH*RDSWCQ
Trigger: CTGGCACCATGAGTCTCTGCAGTGTTCCTGCCCTGC...TTTCAAAACCTCTCCAGTGGCTGTAGCTTTCCCCATGGAGGAAATAAGCTGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR CCA 90 bp GAGACTGATGGTAACATCCGTGTGAGTGTGCAGGGCAGGAACACTGCAGAGACTATAGCCATTTTCCTTTaGCTGACCCTGGGCAGGCAA +
Preference number: 2 (lower is better)
Translates to: ETDGNIRVSVQGRNTAETIAIFL*LTLGRQ
Trigger: TTGCCTGCCCAGGGTCAGCCAAAGGAAAATGGCTAT...AGTCTCTGCAGTGTTCCTGCCCTGCACACTCACACGGATGTTACCATCAGTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR CCA 90 bp AGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGGGAGTGTGCAACCTCCTACTTTGTaGAGCTTTGAGACTTTGCTC +
Preference number: 2 (lower is better)
Translates to: SVQGRNTTETDGASHGSVQPPTL*SFETLL
Trigger: GAGCAAAGTCTCAAAGCTCCACAAAGTAGGAGGTTG...CACACTCCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR CAA 90 bp GGTGCCAGCCATGTGAGTGTGCAGGGCAGGAACACTGTCATTATCTaGTCTTATGTTCTTTTGAGTTGGGTCATGTGGAGACCCTGGGGA +
Preference number: 2 (lower is better)
Translates to: GASHVSVQGRNTVII*SYVLLSWVMWRPWG
Trigger: TCCCCAGGGTCTCCACATGACCCAACTCAAAAGAACATAAGACAAGATAATGACAGTGTTCCTGCCCTGCACACTCACATGGCTGGCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR CAA 90 bp ATGAACCCATTGTCACCTTTGGGCAAGTTAATGTGCTTAGTGGGCTaGAAGTCTGCAGAGACTGGTGCCAGCTGTATGAGTGTGCAGGGC +
Preference number: 2 (lower is better)
Translates to: MNPLSPLGKLMCLVG*KSAETGASCMSVQG
Trigger: GCCCTGCACACTCATACAGCTGGCACCAGTCTCTGCAGACTTCAAGCCCACTAAGCACATTAACTTGCCCAAAGGTGACAATGGGTTCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR TCA 90 bp ACAGCTTATTTCCTCCATGGGGAAAGCTACAGCCACTGGAGAGGTTTTGAAAGCGAAGAAGCTTCTGGCTaGGTCTGCATGGTCCTCCAG +
Preference number: 2 (lower is better)
Translates to: TAYFLHGESYSHWRGFESEEASG*VCMVLQ
Trigger: CTGGAGGACCATGCAGACTCAGCCAGAAGCTTCTTC...GCTTTCAAAACCTCTCCAGTGGCTGTAGCTTTCCCCATGGAGGAAATAAGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR TCA 90 bp ACAGCTTATTTCCTCCATGGGGAAAGCTACAGCCACTGGAGAGGTTTTGAAAGCGAACACTGCAGAGACTaGTGGTGCCAGCCATGTGAG +
Preference number: 2 (lower is better)
Translates to: TAYFLHGESYSHWRGFESEHCRD*WCQPCE
Trigger: CTCACATGGCTGGCACCATCAGTCTCTGCAGTGTTC...GCTTTCAAAACCTCTCCAGTGGCTGTAGCTTTCCCCATGGAGGAAATAAGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR CCA 90 bp GAGCTGCCTAGTCAACAGTTCCTGTTTGGGTCTTGTGTGGCCATACCGCTACAGAGCTTATTTCCTCCATaGGGAAAGCTACAGCCACTG +
Preference number: 2 (lower is better)
Translates to: ELPSQQFLFGSCVAIPLQSLFPP*GKLQPL
Trigger: CAGTGGCTGTAGCTTTCCCCATGGAGGAAATAAGCT...CTGTAGCGGTATGGCCACACAAGACCCAAACAGGAACTGTTGACTAGGCAGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180200.8
3UTR CAA 90 bp GCAGGGCAGGAACACTGTCATTATCTTGTCTTATGTTCTTTTGAGTaGGGTCATGTGGAGACCCTGGGGATGAGTAAGCCAGGACCAACC +
Preference number: 2 (lower is better)
Translates to: AGQEHCHYLVLCSFE*GHVETLGMSKPGPT
Trigger: GGTTGGTCCTGGCTTACTCATCCCCAGGGTCTCCACATGACCCAACTCAAAAGAACATAAGACAAGATAATGACAGTGTTCCTGCCCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR CAA 90 bp ACAACCAGTGTGCTGGACGCCAACTATGGCAGGCATGGTAGATGTTaGAGAGATCTTATAAAGAGTGCGGAGCCTTGGAGACTGAACCCT +
Preference number: 2 (lower is better)
Translates to: TTSVLDANYGRHGRC*RDLIKSAEPWRLNP
Trigger: AGGGTTCAGTCTCCAAGGCTCCGCACTCTTTATAAGATCTCTCAAACATCTACCATGCCTGCCATAGTTGGCGTCCAGCACACTGGTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR GCA 90 bp ACAGCTTATTTCCTCCATGGGGAAAGCTACAGCCACTGGAGAGGTTTTGAAAGCGTCTGCAGAGACTGGTaGCAGCTGTATGAGTGTGCA +
Preference number: 2 (lower is better)
Translates to: TAYFLHGESYSHWRGFESVCRDW*QLYECA
Trigger: TGCACACTCATACAGCTGGCACCAGTCTCTGCAGAC...GCTTTCAAAACCTCTCCAGTGGCTGTAGCTTTCCCCATGGAGGAAATAAGCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR GCA 90 bp CTGGGATCAAAGGTGTGTGCCACCACGCCTGTACTTTGTGGTCTTTATAAGCATGTCTGCAGAGACTGGTaGCAGCTGTATGAGTGTGCA +
Preference number: 2 (lower is better)
Translates to: LGSKVCATTPVLCGLYKHVCRDW*QLYECA
Trigger: TGCACACTCATACAGCTGGCACCAGTCTCTGCAGAC...ATGCTTATAAAGACCACAAAGTACAGGCGTGGTGGCACACACCTTTGATCCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR CCA 90 bp AACACTACAGAGACTGATGGTGCCAGCCATGTGAGTGTGCAGGGCAGGAACACTTATGTTCTTTTGAGTTaGGTCATGTGGAGACCCTGG +
Preference number: 2 (lower is better)
Translates to: NTTETDGASHVSVQGRNTYVLLS*VMWRPW
Trigger: CCAGGGTCTCCACATGACCCAACTCAAAAGAACATA...AGTGTTCCTGCCCTGCACACTCACATGGCTGGCACCATCAGTCTCTGTAGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR CAA 90 bp CAGTTCCTGTTTGGGTCTTGTGTGGCCATACCGCTACAGTTAGGCTaGGGTAAACATTTTAGGCAGAACTACTCCATCAGCGCTGTGTCT +
Preference number: 2 (lower is better)
Translates to: QFLFGSCVAIPLQLG*GKHFRQNYSISAVS
Trigger: AGACACAGCGCTGATGGAGTAGTTCTGCCTAAAATGTTTACCCAAGCCTAACTGTAGCGGTATGGCCACACAAGACCCAAACAGGAACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180200.8
3UTR-3UTR GCA 90 bp TCTTGTTTCAGTCAGACAATGGAAGAAATTTGCCACAGGGAAGCACAGCTTATTCCAGCCATGGGAGTGTaGAGGGCAGGAACACTGCAG +
Preference number: 2 (lower is better)
Translates to: SCFSQTMEEICHREAQLIPAMGV*RAGTLQ
Trigger: CTGCAGTGTTCCTGCCCTGCACACTCCCATGGCTGG...AATAAGCTGTGCTTCCCTGTGGCAAATTTCTTCCATTGTCTGACTGAAACAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR GCA 90 bp GAGCTGCCTAGTCAACAGTTCCTGTTTGGGTCTTGTGTGGCCATACCGCTACAGTTGGGCAAGTTAATGTaGTTAGTGGGCTTGAAGTCT +
Preference number: 2 (lower is better)
Translates to: ELPSQQFLFGSCVAIPLQLGKLM*LVGLKS
Trigger: AGACTTCAAGCCCACTAAGCACATTAACTTGCCCAA...CTGTAGCGGTATGGCCACACAAGACCCAAACAGGAACTGTTGACTAGGCAGCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180200.8
3UTR-3UTR TCA 90 bp TCTTGTTTCAGTCAGACAATGGAAGAAATTTGCCACAGGGAAGCACAGCTTATTTTGAGACTTTGCTCCTaGGTGCCAGACCCTGGTGGC +
Preference number: 2 (lower is better)
Translates to: SCFSQTMEEICHREAQLILRLCS*VPDPGG
Trigger: GCCACCAGGGTCTGGCACTCAGGAGCAAAGTCTCAA...AATAAGCTGTGCTTCCCTGTGGCAAATTTCTTCCATTGTCTGACTGAAACAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR CCA 90 bp TCTTGTTTCAGTCAGACAATGGAAGAAATTTGCCACAGGGAAGCACAGCTTATTAGTGCCAGACCCTGGTaGCAGACCCTTCCCTTCTTC +
Preference number: 2 (lower is better)
Translates to: SCFSQTMEEICHREAQLISARPW*QTLPFF
Trigger: GAAGAAGGGAAGGGTCTGCCACCAGGGTCTGGCACT...AATAAGCTGTGCTTCCCTGTGGCAAATTTCTTCCATTGTCTGACTGAAACAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR CCA 90 bp CTGGGATCAAAGGTGTGTGCCACCACGCCTGTACTTTGTGGTCTTTATAAGCATAGCTTATTTCCTCCATaGGGAAAGCTACAGCCACTG +
Preference number: 2 (lower is better)
Translates to: LGSKVCATTPVLCGLYKHSLFPP*GKLQPL
Trigger: CAGTGGCTGTAGCTTTCCCCATGGAGGAAATAAGCT...ATGCTTATAAAGACCACAAAGTACAGGCGTGGTGGCACACACCTTTGATCCCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR GCA 90 bp GCTATTCTTGGCTTAAATCTAATCTCTTTGTCAAGGCTGCATTTGTCTCGTTACCCAGCCATGGGAGTGTaGAGGGCAGGAACACTACAG +
Preference number: 2 (lower is better)
Translates to: AILGLNLISLSRLHLSRYPAMGV*RAGTLQ
Trigger: CTGTAGTGTTCCTGCCCTGCACACTCCCATGGCTGG...GTAACGAGACAAATGCAGCCTTGACAAAGAGATTAGATTTAAGCCAAGAATAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180200.8
3UTR-3UTR TCA 90 bp TCTTGTTTCAGTCAGACAATGGAAGAAATTTGCCACAGGGAAGCACAGCTTATTATGGTAACATCCGTGTaGGTGTGCAGGGCAGGAACA +
Preference number: 2 (lower is better)
Translates to: SCFSQTMEEICHREAQLIMVTSV*VCRAGT
Trigger: TGTTCCTGCCCTGCACACTCACACGGATGTTACCAT...AATAAGCTGTGCTTCCCTGTGGCAAATTTCTTCCATTGTCTGACTGAAACAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR TCA 90 bp TTACAGGCTATTCTTGGCTTAAATCTAATCTCTTTGTCAAGGCTGCATTTGTCTGAACACTGCAGAGACTaGTGGTGCCAGCCATGGGAG +
Preference number: 2 (lower is better)
Translates to: LQAILGLNLISLSRLHLSEHCRD*WCQPWE
Trigger: CTCCCATGGCTGGCACCATCAGTCTCTGCAGTGTTC...AGACAAATGCAGCCTTGACAAAGAGATTAGATTTAAGCCAAGAATAGCCTGTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180200.8
3UTR-3UTR CCA 90 bp CCTTTCGTTCATCTTCCCAGATTTCTCATATCTTCTCCATATGTATCTAAGGATAGTGCCAGACCCTGGTaGCAGACCCTTCCCTTCTTC +
Preference number: 2 (lower is better)
Translates to: PFVHLPRFLISSPYVSKDSARPW*QTLPFF
Trigger: GAAGAAGGGAAGGGTCTGCCACCAGGGTCTGGCACT...ATCCTTAGATACATATGGAGAAGATATGAGAAATCTGGGAAGATGAACGAAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR TCA 90 bp TTAGCATTAACCTTTCGTTCATCTTCCCAGATTTCTCATATCTTCTCCATATGTCAGGCAAGATGCCTGTaGACTCTGCTGGAGCGCCTT +
Preference number: 2 (lower is better)
Translates to: LALTFRSSSQISHIFSICQARCL*TLLERL
Trigger: AAGGCGCTCCAGCAGAGTTCACAGGCATCTTGCCTG...ACATATGGAGAAGATATGAGAAATCTGGGAAGATGAACGAAAGGTTAATGCTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR TCA 90 bp AACCTTTCGTTCATCTTCCCAGATTTCTCATATCTTCTCCATATGTATCTAAGGGAACACTGCAGAGACTaGTGGTGCCAACCGTGTGAG +
Preference number: 2 (lower is better)
Translates to: NLSFIFPDFSYLLHMYLREHCRD*WCQPCE
Trigger: CTCACACGGTTGGCACCATCAGTCTCTGCAGTGTTC...CCTTAGATACATATGGAGAAGATATGAGAAATCTGGGAAGATGAACGAAAGGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR TCA 90 bp CCTTTCGTTCATCTTCCCAGATTTCTCATATCTTCTCCATATGTATCTAAGGATGAACACTGCAGAGACTaGTGGTGCCAACCGTGTGAG +
Preference number: 2 (lower is better)
Translates to: PFVHLPRFLISSPYVSKDEHCRD*WCQPCE
Trigger: CTCACACGGTTGGCACCATCAGTCTCTGCAGTGTTC...ATCCTTAGATACATATGGAGAAGATATGAGAAATCTGGGAAGATGAACGAAAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR CCA 90 bp TTTCTTGTTTCAGTCAGACAATGGAAGAAATTTGCCACAGGGAAGCACAGCTTACTGAGAAGAAGCTTCTaGCTGAGTCTGCATGGTCCT +
Preference number: 2 (lower is better)
Translates to: FLVSVRQWKKFATGKHSLLRRSF*LSLHGP
Trigger: AGGACCATGCAGACTCAGCCAGAAGCTTCTTCTCAG...TAAGCTGTGCTTCCCTGTGGCAAATTTCTTCCATTGTCTGACTGAAACAAGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR TCA 90 bp AACCTTTCGTTCATCTTCCCAGATTTCTCATATCTTCTCCATATGTATCTAAGGGAACACTACAGAGACTaGTGGTGCCAGCCATGTGAG +
Preference number: 2 (lower is better)
Translates to: NLSFIFPDFSYLLHMYLREHYRD*WCQPCE
Trigger: CTCACATGGCTGGCACCATCAGTCTCTGTAGTGTTC...CCTTAGATACATATGGAGAAGATATGAGAAATCTGGGAAGATGAACGAAAGGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR CAA 90 bp CAAGTGCTGGGATTACAGGCTATTCTTGGCTTAAATCTAATCTCTTaGTCAAGGCTGCATTTGTCTCGTTACTTGCTGTGTTGCCTTTTT +
Preference number: 2 (lower is better)
Translates to: QVLGLQAILGLNLIS*SRLHLSRYLLCCLF
Trigger: AAAAAGGCAACACAGCAAGTAACGAGACAAATGCAGCCTTGACAAAGAGATTAGATTTAAGCCAAGAATAGCCTGTAATCCCAGCACTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180200.8
3UTR-3UTR CCA 90 bp AACCTTTCGTTCATCTTCCCAGATTTCTCATATCTTCTCCATATGTATCTAAGGCAACCTCCTACTTTGTaGAGCTTTGAGACTTTGCTC +
Preference number: 2 (lower is better)
Translates to: NLSFIFPDFSYLLHMYLRQPPTL*SFETLL
Trigger: GAGCAAAGTCTCAAAGCTCCACAAAGTAGGAGGTTG...CCTTAGATACATATGGAGAAGATATGAGAAATCTGGGAAGATGAACGAAAGGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR TCA 72 bp CCATGGGAGTGTGCAGGGCAGGAACACTACAGAGACTaGTGGTGCCAGCCATGGGAGTGTGCAGGGCAGGAA +
Preference number: 3 (lower is better)
Translates to: PWECAGQEHYRD*WCQPWECAGQE
Trigger: TTCCTGCCCTGCACACTCCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCCATGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR CCA 72 bp TGTGAGTGTGCAGGGCAGGAACACTGCAGAGACTCATaGTGCCAGCCATGGGAGTGTGCAGGGCAGGAACAC +
Preference number: 3 (lower is better)
Translates to: CECAGQEHCRDS*CQPWECAGQEH
Trigger: GTGTTCCTGCCCTGCACACTCCCATGGCTGGCACCATGAGTCTCTGCAGTGTTCCTGCCCTGCACACTCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR CAA 90 bp AGTGTGCAGGGCAGGAACACTGCAGAGACTCATGGTGCCAGCCATGGGAGTGTGCGCCTTCCCCTCCTGTaGAGAGCAGCTTTAGAGCTG +
Preference number: 3 (lower is better)
Translates to: SVQGRNTAETHGASHGSVRLPLL*RAALEL
Trigger: CAGCTCTAAAGCTGCTCTCAACAGGAGGGGAAGGCG...CACACTCCCATGGCTGGCACCATGAGTCTCTGCAGTGTTCCTGCCCTGCACACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR CAA 90 bp CATGGGAGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGGGCGACTCCAGGAAGACTaGCAGAGAGCAGAGGTCTCT +
Preference number: 3 (lower is better)
Translates to: HGSVQGRNTTETDGASHGRLQED*QRAEVS
Trigger: AGAGACCTCTGCTCTCTGCAAGTCTTCCTGGAGTCG...CCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCCATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR TCA 72 bp TTTCCTTTGGCTGACCCTGGGCAGGCAAGATGCCTGTaGACTCTGCTGGAGCGCCTTCCCCTCCTGTTGAGA +
Preference number: 3 (lower is better)
Translates to: FPLADPGQARCL*TLLERLPLLLR
Trigger: TCTCAACAGGAGGGGAAGGCGCTCCAGCAGAGTTCACAGGCATCTTGCCTGCCCAGGGTCAGCCAAAGGAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR TCA 72 bp CCATGGGAGTGTGCAGGGCAGGAACACTACAGAGACTaGTGGTGCCAGCCATGTGAGTGTGCAGGGCAGGAA +
Preference number: 3 (lower is better)
Translates to: PWECAGQEHYRD*WCQPCECAGQE
Trigger: TTCCTGCCCTGCACACTCACATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCCATGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR GCA 72 bp CCAGGTTGGCCTCAAACTCACAGATTCCTCTGCCTCTaGCTCCCAGGTGCTGGGATCAAAGGTGTGTGCCAC +
Preference number: 3 (lower is better)
Translates to: PGWPQTHRFLCL*LPGAGIKGVCH
Trigger: GTGGCACACACCTTTGATCCCAGCACCTGGGAGGCAGAGGCAGAGGAATCTGTGAGTTTGAGGCCAACCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR GCA 72 bp GGATTTGAACTCCTGACCTTCGGAAGAGCAGTCGGGTaGTCTTACCCACTGAGCCATCTCACCAGCCCCCTC +
Preference number: 3 (lower is better)
Translates to: GFELLTFGRAVG*SYPLSHLTSPL
Trigger: GAGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCAGGAGTTCAAATCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR CAA 90 bp AGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGGGAGTGTGCGACTCCAGGAAGACTaGCAGAGAGCAGAGGTCTCT +
Preference number: 3 (lower is better)
Translates to: SVQGRNTTETDGASHGSVRLQED*QRAEVS
Trigger: AGAGACCTCTGCTCTCTGCAAGTCTTCCTGGAGTCG...CACACTCCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR TCA 72 bp CTGTATGAGTGTGCAGGGCAGGAACACTACAGAGACTaGTGGTGCCAGCCATGGGAGTGTGCAGGGCAGGAA +
Preference number: 3 (lower is better)
Translates to: LYECAGQEHYRD*WCQPWECAGQE
Trigger: TTCCTGCCCTGCACACTCCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCATACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR GCA 72 bp ACACTGCAGAGACTGATGGTGCCAGCCATGGGAGTGTaGAGGGCAGGAACACTACAGAGACTGATGGTGCCA +
Preference number: 3 (lower is better)
Translates to: TLQRLMVPAMGV*RAGTLQRLMVP
Trigger: TGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCCATGGCTGGCACCATCAGTCTCTGCAGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR CAA 90 bp GAGACTTTGCTCCTGAGTGCCAGACCCTGGTGGCAGACCCTTCCCTTCTTCATCAATAGCCATTTTCCTTaGGCTGACCCTGGGCAGGCA +
Preference number: 3 (lower is better)
Translates to: ETLLLSARPWWQTLPFFINSHFP*ADPGQA
Trigger: TGCCTGCCCAGGGTCAGCCAAAGGAAAATGGCTATT...GATGAAGAAGGGAAGGGTCTGCCACCAGGGTCTGGCACTCAGGAGCAAAGTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR GCA 72 bp ACACTACAGAGACTGATGGTGCCAGCCATGGGAGTGTaGAGGGCAGGAACACTACAGAGACTGATGGTGCCA +
Preference number: 3 (lower is better)
Translates to: TLQRLMVPAMGV*RAGTLQRLMVP
Trigger: TGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCCATGGCTGGCACCATCAGTCTCTGTAGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR GCA 72 bp ACACTGCAGAGACTCATGGTGCCAGCCATGGGAGTGTaGAGGGCAGGAACACTACAGAGACTGATGGTAACA +
Preference number: 3 (lower is better)
Translates to: TLQRLMVPAMGV*RAGTLQRLMVT
Trigger: TGTTACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCCATGGCTGGCACCATGAGTCTCTGCAGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR GCA 72 bp ACACTACAGAGACTGATGGTGCCAGCCATGGGAGTGTaGAGGGCAGGAACACTACAGAGACTGATGGTGACA +
Preference number: 3 (lower is better)
Translates to: TLQRLMVPAMGV*RAGTLQRLMVT
Trigger: TGTCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCCATGGCTGGCACCATCAGTCTCTGTAGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR TCA 72 bp GCAGGAACACTACAGAGACTGATGGTAACATCCGTGTaGGTGTGCAGGGCAGGAACACTGCAGAGACTGATG +
Preference number: 3 (lower is better)
Translates to: AGTLQRLMVTSV*VCRAGTLQRLM
Trigger: CATCAGTCTCTGCAGTGTTCCTGCCCTGCACACTCACACGGATGTTACCATCAGTCTCTGTAGTGTTCCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR TCA 72 bp GCAGGAACACTACAGAGACTGATGGTGACATCCATGTaGGTGTGCAGGGCAGGAACACTGCAGAGACTGATG +
Preference number: 3 (lower is better)
Translates to: AGTLQRLMVTSM*VCRAGTLQRLM
Trigger: CATCAGTCTCTGCAGTGTTCCTGCCCTGCACACTCACATGGATGTCACCATCAGTCTCTGTAGTGTTCCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR GCA 72 bp AATGTGCTTAGTGGGCTTGAAGTCTGCAGAGACTGGTaGCAGCTGTATGAGTGTGCAGGGCAGGAACACTAC +
Preference number: 3 (lower is better)
Translates to: NVLSGLEVCRDW*QLYECAGQEHY
Trigger: GTAGTGTTCCTGCCCTGCACACTCATACAGCTGGCACCAGTCTCTGCAGACTTCAAGCCCACTAAGCACATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR CCA 72 bp TGGAGCTTTGAGACTTTGCTCCTGAGTGCCAGACCCTaGTGGCAGACCCTTCCCTTCTTCATCCCAAAACAA +
Preference number: 3 (lower is better)
Translates to: WSFETLLLSARP*WQTLPFFIPKQ
Trigger: TTGTTTTGGGATGAAGAAGGGAAGGGTCTGCCACCAGGGTCTGGCACTCAGGAGCAAAGTCTCAAAGCTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR CAA 90 bp TTCCCTTCTTCATCCCAAAACAATAGCCATTTTCCTTTGGCTGACCCTGGGCAGCGCCTTCCCCTCCTGTaGAGAGCAGCTTTAGAGCTG +
Preference number: 3 (lower is better)
Translates to: FPSSSQNNSHFPLADPGQRLPLL*RAALEL
Trigger: CAGCTCTAAAGCTGCTCTCAACAGGAGGGGAAGGCG...CTGCCCAGGGTCAGCCAAAGGAAAATGGCTATTGTTTTGGGATGAAGAAGGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR CAA 90 bp GAGTCAGATCTCGTTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGTGGAGCTTTGAGACTTaGCTCCTGAGTGCCAGACCC +
Preference number: 3 (lower is better)
Translates to: ESDLVMDGCEPPCGCWDLWSFET*LLSARP
Trigger: GGGTCTGGCACTCAGGAGCAAAGTCTCAAAGCTCCA...CAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAACGAGATCTGACTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR GCA 72 bp TTTGGGCAAGTTAATGTGCTTAGTGGGCTTGAAGTCTaGAGAGACTGGTGCCAGCTGTATGAGTGTGCAGGG +
Preference number: 3 (lower is better)
Translates to: FGQVNVLSGLEV*RDWCQLYECAG
Trigger: CCCTGCACACTCATACAGCTGGCACCAGTCTCTGCAGACTTCAAGCCCACTAAGCACATTAACTTGCCCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR GCA 72 bp CTCCAGGCTGCTATAACATCTTTCTGCAGGCAGAGCTaGCTAGTCAACAGTTCCTGTTTGGGTCTTGTGTGG +
Preference number: 3 (lower is better)
Translates to: LQAAITSFCRQS*LVNSSCLGLVW
Trigger: CCACACAAGACCCAAACAGGAACTGTTGACTAGGCAGCTCTGCCTGCAGAAAGATGTTATAGCAGCCTGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180200.8
3UTR CCA 72 bp CTCAGACACTCCAGAAGAGGGAGTCAGATCTCGTTATaGATGGTTGTGAGCCACCATGTGGTTGCTGGGATT +
Preference number: 3 (lower is better)
Translates to: LRHSRRGSQISL*MVVSHHVVAGI
Trigger: AATCCCAGCAACCACATGGTGGCTCACAACCATCCATAACGAGATCTGACTCCCTCTTCTGGAGTGTCTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR CAA 90 bp GGGAGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGTGAGTTTGTCTTATGTTCTTTaGAGTTGGGTCATGTGGAGA +
Preference number: 3 (lower is better)
Translates to: GSVQGRNTTETDGASHVSLSYVL*SWVMWR
Trigger: TCTCCACATGACCCAACTCAAAAGAACATAAGACAA...ACTCACATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR CCA 72 bp TTTCTGCTGTCCCGGAATTTACTAAGTAGACCAGGTTaGCCTCAAACTCACAGATTCCTCTGCCTCTGCCTC +
Preference number: 3 (lower is better)
Translates to: FLLSRNLLSRPG*PQTHRFLCLCL
Trigger: GAGGCAGAGGCAGAGGAATCTGTGAGTTTGAGGCCAACCTGGTCTACTTAGTAAATTCCGGGACAGCAGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR GCA 72 bp AAAATGAACCCATTGTCACCTTTGGGCAAGTTAATGTaGTTAGTGGGCTTGAAGTCTGCAGAGACTGGTGCC +
Preference number: 3 (lower is better)
Translates to: KMNPLSPLGKLM*LVGLKSAETGA
Trigger: GGCACCAGTCTCTGCAGACTTCAAGCCCACTAAGCACATTAACTTGCCCAAAGGTGACAATGGGTTCATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR-3UTR CAA 90 bp TCTTGTTTCAGTCAGACAATGGAAGAAATTTGCCACAGGGAAGCACAGCTTATTATGTGCTTAGTGGGCTaGAAGTCTGCAGAGACTGGT +
Preference number: 3 (lower is better)
Translates to: SCFSQTMEEICHREAQLIMCLVG*KSAETG
Trigger: ACCAGTCTCTGCAGACTTCAAGCCCACTAAGCACAT...AATAAGCTGTGCTTCCCTGTGGCAAATTTCTTCCATTGTCTGACTGAAACAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR CCA 72 bp AGATGTTTGAGAGATCTTATAAAGAGTGCGGAGCCTTaGAGACTGAACCCTTACTCCAGAGTCTTAGCATTA +
Preference number: 3 (lower is better)
Translates to: RCLRDLIKSAEP*RLNPYSRVLAL
Trigger: TAATGCTAAGACTCTGGAGTAAGGGTTCAGTCTCCAAGGCTCCGCACTCTTTATAAGATCTCTCAAACATCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR GCA 72 bp CATATACAGCATCACCTCTCACTATCAACTGTCAACTaGCATGATAAGTCTTCTGAATACTCAAGTTTTAGG +
Preference number: 3 (lower is better)
Translates to: HIQHHLSLSTVN*HDKSSEYSSFR
Trigger: CCTAAAACTTGAGTATTCAGAAGACTTATCATGGCAGTTGACAGTTGATAGTGAGAGGTGATGCTGTATATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180200.8
CDS-3UTR TCA 90 bp GCTGGAGCGCCTTCCCCTCCTGTTGAGAGCAGCTTTAGAGCTGGCCCAGCAGCAGGGCTCCCTCTGGGCTaGTGGAGTTTTCTCGCAGGT +
Preference number: 4 (lower is better)
Translates to: AGAPSPPVESSFRAGPAAGLPLG*WSFLAG
Trigger: ACCTGCGAGAAAACTCCATCAGCCCAGAGGGAGCCC...TGCTGCTGGGCCAGCTCTAAAGCTGCTCTCAACAGGAGGGGAAGGCGCTCCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR GCA 90 bp AGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGGGAGTGTGGAGGGCCTCCCCAAGTaGCTGGGCCCCTTGGCTACC +
Preference number: 4 (lower is better)
Translates to: SVQGRNTTETDGASHGSVEGLPK*LGPLAT
Trigger: GGTAGCCAAGGGGCCCAGGCACTTGGGGAGGCCCTC...CACACTCCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR GCA 90 bp GAGACTTTGCTCCTGAGTGCCAGACCCTGGTGGCAGACCCTTCCCTTCTTCATCGAGGGCCTCCCCAAGTaGCTGGGCCCCTTGGCTACC +
Preference number: 4 (lower is better)
Translates to: ETLLLSARPWWQTLPFFIEGLPK*LGPLAT
Trigger: GGTAGCCAAGGGGCCCAGGCACTTGGGGAGGCCCTC...GATGAAGAAGGGAAGGGTCTGCCACCAGGGTCTGGCACTCAGGAGCAAAGTCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR GCA 90 bp CATGGGAGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGGGGGCCTTGGCTCCAGCTaGCCCAACGTCGTTTCCTCG +
Preference number: 4 (lower is better)
Translates to: HGSVQGRNTTETDGASHGGLGSS*PNVVSS
Trigger: CGAGGAAACGACGTTGGGGCAGCTGGAGCCAAGGCC...CCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCCATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR TCA 90 bp GCTGGAGCGCCTTCCCCTCCTGTTGAGAGCAGCTTTAGAGCTGGCCCAGCAGCAACATGCCACTCTCGGTaGAGAGGTCAAAGATGGCCC +
Preference number: 4 (lower is better)
Translates to: AGAPSPPVESSFRAGPAATCHSR*RGQRWP
Trigger: GGGCCATCTTTGACCTCTTCACCGAGAGTGGCATGT...TGCTGCTGGGCCAGCTCTAAAGCTGCTCTCAACAGGAGGGGAAGGCGCTCCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR TCA 90 bp AGTGTGCAGGGCAGGAACACTGCAGAGACTCATGGTGCCAGCCATGGGAGTGTGGGGCTCCCTCTGGGCTaGTGGAGTTTTCTCGCAGGT +
Preference number: 4 (lower is better)
Translates to: SVQGRNTAETHGASHGSVGLPLG*WSFLAG
Trigger: ACCTGCGAGAAAACTCCATCAGCCCAGAGGGAGCCC...CACACTCCCATGGCTGGCACCATGAGTCTCTGCAGTGTTCCTGCCCTGCACACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR TCA 90 bp GGGAGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGTGAGTTTCCTGCAGAGAGCTTaGGTGAGGGCCTGGGCTCCC +
Preference number: 4 (lower is better)
Translates to: GSVQGRNTTETDGASHVSFLQRA*VRAWAP
Trigger: GGGAGCCCAGGCCCTCACTCAAGCTCTCTGCAGGAA...ACTCACATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR GCA 90 bp CCATGTGAGTGTGCAGGGCAGGAACACTGCAGAGACTCATGGTGCCAGCCATGGGGACGGCCAGCCTGGTaGGATACAAGTGACCCAGAG +
Preference number: 4 (lower is better)
Translates to: PCECAGQEHCRDSWCQPWGRPAW*DTSDPE
Trigger: CTCTGGGTCACTTGTATCGCACCAGGCTGGCCGTCC...CCATGGCTGGCACCATGAGTCTCTGCAGTGTTCCTGCCCTGCACACTCACATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR GCA 90 bp GAGACTTTGCTCCTGAGTGCCAGACCCTGGTGGCAGACCCTTCCCTTCTTCATCTGTGGCCCGCTGGGCTaGACACCTGAAATGGGCGAG +
Preference number: 4 (lower is better)
Translates to: ETLLLSARPWWQTLPFFICGPLG*TPEMGE
Trigger: CTCGCCCATTTCAGGTGTGCAGCCCAGCGGGCCACA...GATGAAGAAGGGAAGGGTCTGCCACCAGGGTCTGGCACTCAGGAGCAAAGTCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR GCA 90 bp GAGACTTTGCTCCTGAGTGCCAGACCCTGGTGGCAGACCCTTCCCTTCTTCATCGGCCTTGGCTCCAGCTaGCCCAACGTCGTTTCCTCG +
Preference number: 4 (lower is better)
Translates to: ETLLLSARPWWQTLPFFIGLGSS*PNVVSS
Trigger: CGAGGAAACGACGTTGGGGCAGCTGGAGCCAAGGCC...GATGAAGAAGGGAAGGGTCTGCCACCAGGGTCTGGCACTCAGGAGCAAAGTCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp CTGATGGTGCCAGCCATGGGAGTGTGCAGGGCAGGAACACTGCAGAGACTGATGGTCTCCTTCCTGCCATaGTGGCTGCTCCAGGGTGCT +
Preference number: 4 (lower is better)
Translates to: LMVPAMGVCRAGTLQRLMVSFLP*WLLQGA
Trigger: AGCACCCTGGAGCAGCCACCATGGCAGGAAGGAGAC...CATCAGTCTCTGCAGTGTTCCTGCCCTGCACACTCCCATGGCTGGCACCATCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CCA 90 bp TGCAGGGCAGGAACACTGCAGAGACTCATGGTGCCAGCCATGGGAGTGTGCAGGAGACTCGAGGTGGGATaGATACCCGGGACAGAGGCA +
Preference number: 4 (lower is better)
Translates to: CRAGTLQRLMVPAMGVCRRLEVG*IPGTEA
Trigger: TGCCTCTGTCCCGGGTATCCATCCCACCTCGAGTCT...CCTGCACACTCCCATGGCTGGCACCATGAGTCTCTGCAGTGTTCCTGCCCTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CCA 90 bp CCATGTGAGTGTGCAGGGCAGGAACACTGCAGAGACTCATGGTGCCAGCCATGGGGCCTGGGCTCCCTCTaGGCTGATGGAGTTTTCTCG +
Preference number: 4 (lower is better)
Translates to: PCECAGQEHCRDSWCQPWGLGSL*ADGVFS
Trigger: CGAGAAAACTCCATCAGCCCAGAGGGAGCCCAGGCC...CCATGGCTGGCACCATGAGTCTCTGCAGTGTTCCTGCCCTGCACACTCACATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp AGTGTGCAGGGCAGGAACACTGCAGAGACTCATGGTGCCAGCCATGGGAGTGTGGCTACTGCAATGGCCTaGGCACCTCGGTCATGGAGG +
Preference number: 4 (lower is better)
Translates to: SVQGRNTAETHGASHGSVATAMA*APRSWR
Trigger: CCTCCATGACCGAGGTGCCCAGGCCATTGCAGTAGC...CACACTCCCATGGCTGGCACCATGAGTCTCTGCAGTGTTCCTGCCCTGCACACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp GGGAGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGTGAGTGCCTCCCCAAGTGCCTaGGCCCCTTGGCTACCAATG +
Preference number: 4 (lower is better)
Translates to: GSVQGRNTTETDGASHVSASPSA*APWLPM
Trigger: CATTGGTAGCCAAGGGGCCCAGGCACTTGGGGAGGC...ACTCACATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR GCA 90 bp CATGGGAGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGGGAGGGCATCTGCCATCTaGTGGGCTCCTATGAGCCCA +
Preference number: 4 (lower is better)
Translates to: HGSVQGRNTTETDGASHGRASAI*WAPMSP
Trigger: TGGGCTCATAGGAGCCCAGCAGATGGCAGATGCCCT...CCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCCATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR GCA 90 bp GGGAGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGTGAGTTCTGTTCAGCTGGAGTaGTTGTCCCAGGGCCCTGGC +
Preference number: 4 (lower is better)
Translates to: GSVQGRNTTETDGASHVSSVQLE*LSQGPG
Trigger: GCCAGGGCCCTGGGACAAGCACTCCAGCTGAACAGA...ACTCACATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp GAGACTTTGCTCCTGAGTGCCAGACCCTGGTGGCAGACCCTTCCCTTCTTCATCCCTCAGCCAGGGCTATaGCACCTCTGTCGCCAATGG +
Preference number: 4 (lower is better)
Translates to: ETLLLSARPWWQTLPFFIPQPGL*HLCRQW
Trigger: CCATTGGCGACAGAGGTGCCATAGCCCTGGCTGAGG...GATGAAGAAGGGAAGGGTCTGCCACCAGGGTCTGGCACTCAGGAGCAAAGTCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp TGCAGGGCAGGAACACTGCAGAGACTCATGGTGCCAGCCATGGGAGTGTGCAGGAGACTGGAGAGTGTCTaGTTACTGCAGAGGGCTCGC +
Preference number: 4 (lower is better)
Translates to: CRAGTLQRLMVPAMGVCRRLESV*LLQRAR
Trigger: GCGAGCCCTCTGCAGTAACCAGACACTCTCCAGTCT...CCTGCACACTCCCATGGCTGGCACCATGAGTCTCTGCAGTGTTCCTGCCCTGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp CATGGGAGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGGGCCACAGCTACTGCAATaGCCTGGGCACCTCGGTCAT +
Preference number: 4 (lower is better)
Translates to: HGSVQGRNTTETDGASHGPQLLQ*PGHLGH
Trigger: ATGACCGAGGTGCCCAGGCCATTGCAGTAGCTGTGG...CCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCCATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp CATGGGAGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGGGCTGGCCGCACCAGCTTaGATGAAGTTCCACTGCAGG +
Preference number: 4 (lower is better)
Translates to: HGSVQGRNTTETDGASHGLAAPA*MKFHCR
Trigger: CCTGCAGTGGAACTTCATCCAAGCTGGTGCGGCCAG...CCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCCATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp AGTGTGCAGGGCAGGAACACTGCAGAGACTCATGGTGCCAGCCATGGGAGTGTGAGGGTTCTGTTCAGCTaGAGTGCTTGTCCCAGGGCC +
Preference number: 4 (lower is better)
Translates to: SVQGRNTAETHGASHGSVRVLFS*SACPRA
Trigger: GGCCCTGGGACAAGCACTCCAGCTGAACAGAACCCT...CACACTCCCATGGCTGGCACCATGAGTCTCTGCAGTGTTCCTGCCCTGCACACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR TCA 90 bp TGCAGGGCAGGAACACTGCAGAGACTCATGGTGCCAGCCATGGGAGTGTGCAGGCCTCTGGCCCAGCAATaGACAAAATGCCTCACTAGC +
Preference number: 4 (lower is better)
Translates to: CRAGTLQRLMVPAMGVCRPLAQQ*TKCLTS
Trigger: GCTAGTGAGGCATTTTGTTCATTGCTGGGCCAGAGG...CCTGCACACTCCCATGGCTGGCACCATGAGTCTCTGCAGTGTTCCTGCCCTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR TCA 90 bp TGCAGAGAGCAGAGGTCTCTGAGAAGAAGCTTCTGGCTGAGTCTGCATGGTCCTCTGGTGCGATACAAGTaGCCCAGAGCCAGCCCCGTG +
Preference number: 4 (lower is better)
Translates to: CREQRSLRRSFWLSLHGPLVRYK*PRASPV
Trigger: CACGGGGCTGGCTCTGGGTCACTTGTATCGCACCAG...AGGACCATGCAGACTCAGCCAGAAGCTTCTTCTCAGAGACCTCTGCTCTCTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR TCA 90 bp GGGAGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGGGAGTAAGTTCCACTGCAGGTaGAGGTGTGTGAGGGAGTGG +
Preference number: 4 (lower is better)
Translates to: GSVQGRNTTETDGASHGSKFHCR*RCVREW
Trigger: CCACTCCCTCACACACCTTCACCTGCAGTGGAACTT...ACTCCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR GCA 90 bp CTGATGGTGCCAGCCATGGGAGTGTGCAGGGCAGGAACACTGCAGAGACTGATGACAAGGGCTTTCACCTaGTCAGCTGGGGAGCCAACA +
Preference number: 4 (lower is better)
Translates to: LMVPAMGVCRAGTLQRLMTRAFT*SAGEPT
Trigger: TGTTGGCTCCCCAGCTGAGCAGGTGAAAGCCCTTGT...CATCAGTCTCTGCAGTGTTCCTGCCCTGCACACTCCCATGGCTGGCACCATCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CCA 90 bp GGGAGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGTGAGTTGGAGATGGTCTGGTTaGAGACCAGGGCCTCAGCCA +
Preference number: 4 (lower is better)
Translates to: GSVQGRNTTETDGASHVSWRWSG*RPGPQP
Trigger: TGGCTGAGGCCCTGGTCTCCAACCAGACCATCTCCA...ACTCACATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp AGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGGGAGTGTGCCACAGCTACTGCAATaGCCTGGGCACCTCGGTCAT +
Preference number: 4 (lower is better)
Translates to: SVQGRNTTETDGASHGSVPQLLQ*PGHLGH
Trigger: ATGACCGAGGTGCCCAGGCCATTGCAGTAGCTGTGG...CACACTCCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp GGGAGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGTGAGTAGGGTTCTGTTCAGCTaGAGTGCTTGTCCCAGGGCC +
Preference number: 4 (lower is better)
Translates to: GSVQGRNTTETDGASHVSRVLFS*SACPRA
Trigger: GGCCCTGGGACAAGCACTCCAGCTGAACAGAACCCT...ACTCACATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR TCA 90 bp TGCAGGGCAGGAACACTGCAGAGACTCATGGTGCCAGCCATGGGAGTGTGCAGGACACGTATTTCTTCTTaGCCAGCCCATGGAAGGCCA +
Preference number: 4 (lower is better)
Translates to: CRAGTLQRLMVPAMGVCRTRISS*PAHGRP
Trigger: TGGCCTTCCATGGGCTGGTCAAGAAGAAATACGTGT...CCTGCACACTCCCATGGCTGGCACCATGAGTCTCTGCAGTGTTCCTGCCCTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR GCA 90 bp GATGGTGCCAGCCATGGGAGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTATGTTGTCTCCTTCCTaGCATGGTGGCTGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: DGASHGSVQGRNTTETDGMLSPS*HGGCSR
Trigger: CCTGGAGCAGCCACCATGGCAGGAAGGAGACAACAT...ACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCCATGGCTGGCACCATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR GCA 90 bp GAAGACTTGCAGAGAGCAGAGGTCTCTGAGAAGAAGCTTCTGGCTGAGTCTGCAGGTAGGCCAGAGCAGTaGGGTGTGAGGGGCTGGTCA +
Preference number: 4 (lower is better)
Translates to: EDLQRAEVSEKKLLAESAGRPEQ*GVRGWS
Trigger: TGACCAGCCCCTCACACCGCACTGCTCTGGCCTACC...TGCAGACTCAGCCAGAAGCTTCTTCTCAGAGACCTCTGCTCTCTGCAAGTCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CCA 90 bp TGCAGGGCAGGAACACTGCAGAGACTCATGGTGCCAGCCATGGGAGTGTGCAGGAAGTTCTCCAGGATCTaGTTCACCTTCAGGGCCTCA +
Preference number: 4 (lower is better)
Translates to: CRAGTLQRLMVPAMGVCRKFSRI*FTFRAS
Trigger: TGAGGCCCTGAAGGTGAACCAGATCCTGGAGAACTT...CCTGCACACTCCCATGGCTGGCACCATGAGTCTCTGCAGTGTTCCTGCCCTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp AGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGGGAGTGTGAGACTGGAGAGTGTCTaGTTACTGCAGAGGGCTCGC +
Preference number: 4 (lower is better)
Translates to: SVQGRNTTETDGASHGSVRLESV*LLQRAR
Trigger: GCGAGCCCTCTGCAGTAACCAGACACTCTCCAGTCT...CACACTCCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp AACACTACAGAGACTGATGGTGCCAGCCATGTGAGTGTGCAGGGCAGGAACACTGCTACTGCAATGGCCTaGGCACCTCGGTCATGGAGG +
Preference number: 4 (lower is better)
Translates to: NTTETDGASHVSVQGRNTATAMA*APRSWR
Trigger: CCTCCATGACCGAGGTGCCCAGGCCATTGCAGTAGC...AGTGTTCCTGCCCTGCACACTCACATGGCTGGCACCATCAGTCTCTGTAGTGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp CTGATGGTGCCAGCCATGGGAGTGTGCAGGGCAGGAACACTGCAGAGACTGATGCAGAGGCAACAAATATaGCCCCATCCATCCCCAGTG +
Preference number: 4 (lower is better)
Translates to: LMVPAMGVCRAGTLQRLMQRQQI*PHPSPV
Trigger: CACTGGGGATGGATGGGGCCATATTTGTTGCCTCTG...CATCAGTCTCTGCAGTGTTCCTGCCCTGCACACTCCCATGGCTGGCACCATCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp AGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGGGAGTGTGCCTCTGAGATCATCCTaGCAGCAGACTCCCCAATGG +
Preference number: 4 (lower is better)
Translates to: SVQGRNTTETDGASHGSVPLRSS*QQTPQW
Trigger: CCATTGGGGAGTCTGCTGCCAGGATGATCTCAGAGG...CACACTCCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR CAA 72 bp GAGCTGGCCCAGCAGCATCTCCGACTCCAGGAAGACTaGCAGAGAGCAGAGGTCTCTGAGAAGAAGCTTCTG +
Preference number: 4 (lower is better)
Translates to: ELAQQHLRLQED*QRAEVSEKKLL
Trigger: CAGAAGCTTCTTCTCAGAGACCTCTGCTCTCTGCAAGTCTTCCTGGAGTCGGAGATGCTGCTGGGCCAGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR TCA 90 bp GGTGCCAGCCATGTGAGTGTGCAGGGCAGGAACACTGTCATTATCTTGTCTTATCGGACTTGTAGCAGCTaGCTGCCCTTCCCAGCCAGC +
Preference number: 4 (lower is better)
Translates to: GASHVSVQGRNTVIILSYRTCSS*LPFPAS
Trigger: GCTGGCTGGGAAGGGCAGTCAGCTGCTACAAGTCCG...ATAAGACAAGATAATGACAGTGTTCCTGCCCTGCACACTCACATGGCTGGCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR TCA 90 bp CATGGGAGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGGGGCAGAGACAGGTGAATaGAGCAGTAAGCTACAGAGG +
Preference number: 4 (lower is better)
Translates to: HGSVQGRNTTETDGASHGAETGE*SSKLQR
Trigger: CCTCTGTAGCTTACTGCTTCATTCACCTGTCTCTGC...CCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CCA 90 bp CCATGTGAGTGTGCAGGGCAGGAACACTGCAGAGACTCATGGTGCCAGCCATGGCTTGACTCATTGCTCTaGGATCCTAGTGGGGAGTCT +
Preference number: 4 (lower is better)
Translates to: PCECAGQEHCRDSWCQPWLDSLL*DPSGES
Trigger: AGACTCCCCACTAGGATCCCAGAGCAATGAGTCAAG...CCATGGCTGGCACCATGAGTCTCTGCAGTGTTCCTGCCCTGCACACTCACATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CCA 90 bp AGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGGGAGTGTGCAGAGTATTGACCCTTaGGGACAAGAGGCCAGAGAG +
Preference number: 4 (lower is better)
Translates to: SVQGRNTTETDGASHGSVQSIDP*GQEARE
Trigger: CTCTCTGGCCTCTTGTCCCCAAGGGTCAATACTCTG...CACACTCCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CCA 90 bp GATGGTGCCAGCCATGGGAGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGGAGAAGTCAGCCTCTaGGGAGCAGATGTCAGACAT +
Preference number: 4 (lower is better)
Translates to: DGASHGSVQGRNTTETDGGEVSL*GADVRH
Trigger: ATGTCTGACATCTGCTCCCCAGAGGCTGACTTCTCC...ACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCCATGGCTGGCACCATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR TCA 90 bp GGGAGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGGGAGTGTAGGTAGAGAGCAATaGGGGTTGTGTTCACCTTCA +
Preference number: 4 (lower is better)
Translates to: GSVQGRNTTETDGASHGSVGREQ*GLCSPS
Trigger: TGAAGGTGAACACAACCCTCATTGCTCTCTACCTAC...ACTCCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR GCA 90 bp CTGATGGTGCCAGCCATGGGAGTGTGCAGGGCAGGAACACTGCAGAGACTGATGGTGGTTCTCAGACAGTaGAGAGGCAACAAATATGGC +
Preference number: 4 (lower is better)
Translates to: LMVPAMGVCRAGTLQRLMVVLRQ*RGNKYG
Trigger: GCCATATTTGTTGCCTCTGCACTGTCTGAGAACCAC...CATCAGTCTCTGCAGTGTTCCTGCCCTGCACACTCCCATGGCTGGCACCATCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp AGTGTGCAGGGCAGGAACACTGCAGAGACTCATGGTGCCAGCCATGGGAGTGTGATCAGGTGGTCTACCTaGATCTCCTTCTTTGGGTCT +
Preference number: 4 (lower is better)
Translates to: SVQGRNTAETHGASHGSVIRWST*ISFFGS
Trigger: AGACCCAAAGAAGGAGATCCAGGTAGACCACCTGAT...CACACTCCCATGGCTGGCACCATGAGTCTCTGCAGTGTTCCTGCCCTGCACACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CCA 90 bp AGTGTGCAGGGCAGGAACACTGCAGAGACTCATGGTGCCAGCCATGGGAGTGTGATCTGGCCAGGGCTTTaGCTCCTTTGTTACCAATCT +
Preference number: 4 (lower is better)
Translates to: SVQGRNTAETHGASHGSVIWPGL*LLCYQS
Trigger: AGATTGGTAACAAAGGAGCCAAAGCCCTGGCCAGAT...CACACTCCCATGGCTGGCACCATGAGTCTCTGCAGTGTTCCTGCCCTGCACACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp GACCCTTCCCTTCTTCATCCCAAAACAATAGCCATTTTCCTTTGGCTGACCCTGAGTGCCTGGGCCCCTTaGCTACCAATGGAGGCCACC +
Preference number: 4 (lower is better)
Translates to: DPSLLHPKTIAIFLWLTLSAWAP*LPMEAT
Trigger: GGTGGCCTCCATTGGTAGCCAAGGGGCCCAGGCACT...CAGGGTCAGCCAAAGGAAAATGGCTATTGTTTTGGGATGAAGAAGGGAAGGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp CTGGGATCAAAGGTGTGTGCCACCACGCCTGTACTTTGTGGTCTTTATAAGCATAGTGCCTGGGCCCCTTaGCTACCAATGGAGGCCACC +
Preference number: 4 (lower is better)
Translates to: LGSKVCATTPVLCGLYKHSAWAP*LPMEAT
Trigger: GGTGGCCTCCATTGGTAGCCAAGGGGCCCAGGCACT...ATGCTTATAAAGACCACAAAGTACAGGCGTGGTGGCACACACCTTTGATCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp GATGGTGCCAGCCATGGGAGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTATATGGTGCAGACCGTaGTTCTCAGACAGTGCAGAG +
Preference number: 4 (lower is better)
Translates to: DGASHGSVQGRNTTETDGIWCRP*FSDSAE
Trigger: CTCTGCACTGTCTGAGAACCACGGTCTGCACCATAT...ACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCCATGGCTGGCACCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR TCA 90 bp GGGAGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGGGAGTAGAAGATGGATTGGATaGGTCTGTCTGCAGACAGTT +
Preference number: 4 (lower is better)
Translates to: GSVQGRNTTETDGASHGSRRWIG*VCLQTV
Trigger: AACTGTCTGCAGACAGACTCATCCAATCCATCTTCT...ACTCCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR TCA 90 bp AACACTACAGAGACTGATGGTGCCAGCCATGTGAGTGTGCAGGGCAGGAACACTGGCAGTACAAGACATTaGTGGCACGTGCACAGACTG +
Preference number: 4 (lower is better)
Translates to: NTTETDGASHVSVQGRNTGSTRH*WHVHRL
Trigger: CAGTCTGTGCACGTGCCATCAATGTCTTGTACTGCC...AGTGTTCCTGCCCTGCACACTCACATGGCTGGCACCATCAGTCTCTGTAGTGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR TCA 90 bp GGCAAGTTAATGTGCTTAGTGGGCTTGAAGTCTGCAGAGACTGGTGCCAGCTGTCCGCACCAGCTTGGATaGAGTTCCACTGCAGGTGAA +
Preference number: 4 (lower is better)
Translates to: GKLMCLVGLKSAETGASCPHQLG*SSTAGE
Trigger: TTCACCTGCAGTGGAACTTCATCCAAGCTGGTGCGG...ACAGCTGGCACCAGTCTCTGCAGACTTCAAGCCCACTAAGCACATTAACTTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR TCA 90 bp GAAGACTTGCAGAGAGCAGAGGTCTCTGAGAAGAAGCTTCTGGCTGAGTCTGCACCCATCCATCCCCAGTaGGTTCTCCTGGAGATTGAG +
Preference number: 4 (lower is better)
Translates to: EDLQRAEVSEKKLLAESAPIHPQ*VLLEIE
Trigger: CTCAATCTCCAGGAGAACTCACTGGGGATGGATGGG...TGCAGACTCAGCCAGAAGCTTCTTCTCAGAGACCTCTGCTCTCTGCAAGTCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR GCA 90 bp GAAGACTTGCAGAGAGCAGAGGTCTCTGAGAAGAAGCTTCTGGCTGAGTCTGCAGGCACGTGCACAGACTaGAGCGTCAGGATGAAGGAA +
Preference number: 4 (lower is better)
Translates to: EDLQRAEVSEKKLLAESAGTCTD*SVRMKE
Trigger: TTCCTTCATCCTGACGCTGCAGTCTGTGCACGTGCC...TGCAGACTCAGCCAGAAGCTTCTTCTCAGAGACCTCTGCTCTCTGCAAGTCTTC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR GCA 90 bp GGCAAGTTAATGTGCTTAGTGGGCTTGAAGTCTGCAGAGACTGGTGCCAGCTGTCTGCTTCAGGGCATCTaGCATCTGCTGGGCTCCTAT +
Preference number: 4 (lower is better)
Translates to: GKLMCLVGLKSAETGASCLLQGI*HLLGSY
Trigger: ATAGGAGCCCAGCAGATGGCAGATGCCCTGAAGCAG...ACAGCTGGCACCAGTCTCTGCAGACTTCAAGCCCACTAAGCACATTAACTTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR GCA 90 bp AGTGTGCAGGGCAGGAACACTGCAGAGACTCATGGTGCCAGCCATGGGAGTGTGACTGGAAAACATGAGTaGTTTCAGGCTCCTGTTCTG +
Preference number: 4 (lower is better)
Translates to: SVQGRNTAETHGASHGSVTGKHE*FQAPVL
Trigger: CAGAACAGGAGCCTGAAAGCACTCATGTTTTCCAGT...CACACTCCCATGGCTGGCACCATGAGTCTCTGCAGTGTTCCTGCCCTGCACACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR GCA 90 bp CTGGGATCAAAGGTGTGTGCCACCACGCCTGTACTTTGTGGTCTTTATAAGCATTCTGTTCAGCTGGAGTaGTTGTCCCAGGGCCCTGGC +
Preference number: 4 (lower is better)
Translates to: LGSKVCATTPVLCGLYKHSVQLE*LSQGPG
Trigger: GCCAGGGCCCTGGGACAAGCACTCCAGCTGAACAGA...ATGCTTATAAAGACCACAAAGTACAGGCGTGGTGGCACACACCTTTGATCCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp GGCAAGTTAATGTGCTTAGTGGGCTTGAAGTCTGCAGAGACTGGTGCCAGCTGTTTTCACCTGCTCAGCTaGGGAGCCAACACTGTAGGC +
Preference number: 4 (lower is better)
Translates to: GKLMCLVGLKSAETGASCFHLLS*GANTVG
Trigger: GCCTACAGTGTTGGCTCCCCAGCTGAGCAGGTGAAA...ACAGCTGGCACCAGTCTCTGCAGACTTCAAGCCCACTAAGCACATTAACTTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CCA 90 bp CTGGGATCAAAGGTGTGTGCCACCACGCCTGTACTTTGTGGTCTTTATAAGCATGGGGCTGCCCAGTTCTaGGTCATTTCCCACCCTGCT +
Preference number: 4 (lower is better)
Translates to: LGSKVCATTPVLCGLYKHGAAQF*VISHPA
Trigger: AGCAGGGTGGGAAATGACCCAGAACTGGGCAGCCCC...ATGCTTATAAAGACCACAAAGTACAGGCGTGGTGGCACACACCTTTGATCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CCA 90 bp TGCAGAGAGCAGAGGTCTCTGAGAAGAAGCTTCTGGCTGAGTCTGCATGGTCCTGCATCTGCCATCTGCTaGGCTCCTATGAGCCCAATT +
Preference number: 4 (lower is better)
Translates to: CREQRSLRRSFWLSLHGPASAIC*APMSPI
Trigger: AATTGGGCTCATAGGAGCCCAGCAGATGGCAGATGC...AGGACCATGCAGACTCAGCCAGAAGCTTCTTCTCAGAGACCTCTGCTCTCTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp TTCCCTTCTTCATCCCAAAACAATAGCCATTTTCCTTTGGCTGACCCTGGGCAGCCTCAGCCAGGGCTATaGCACCTCTGTCGCCAATGG +
Preference number: 4 (lower is better)
Translates to: FPSSSQNNSHFPLADPGQPQPGL*HLCRQW
Trigger: CCATTGGCGACAGAGGTGCCATAGCCCTGGCTGAGG...CTGCCCAGGGTCAGCCAAAGGAAAATGGCTATTGTTTTGGGATGAAGAAGGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp TTCCCTTCTTCATCCCAAAACAATAGCCATTTTCCTTTGGCTGACCCTGGGCAGGGCCTGGGCTCCCTCTaGGCTGATGGAGTTTTCTCG +
Preference number: 4 (lower is better)
Translates to: FPSSSQNNSHFPLADPGQGLGSL*ADGVFS
Trigger: CGAGAAAACTCCATCAGCCCAGAGGGAGCCCAGGCC...CTGCCCAGGGTCAGCCAAAGGAAAATGGCTATTGTTTTGGGATGAAGAAGGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp GGCAAGTTAATGTGCTTAGTGGGCTTGAAGTCTGCAGAGACTGGTGCCAGCTGTCCTCTGAGATCATCCTaGCAGCAGACTCCCCAATGG +
Preference number: 4 (lower is better)
Translates to: GKLMCLVGLKSAETGASCPLRSS*QQTPQW
Trigger: CCATTGGGGAGTCTGCTGCCAGGATGATCTCAGAGG...ACAGCTGGCACCAGTCTCTGCAGACTTCAAGCCCACTAAGCACATTAACTTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR TCA 90 bp TTCCCTTCTTCATCCCAAAACAATAGCCATTTTCCTTTGGCTGACCCTGGGCAGGGAGGACATGCTGGCTaGGACACAGGGAGAAGTCAG +
Preference number: 4 (lower is better)
Translates to: FPSSSQNNSHFPLADPGQGGHAG*DTGRSQ
Trigger: CTGACTTCTCCCTGTGTCTCAGCCAGCATGTCCTCC...CTGCCCAGGGTCAGCCAAAGGAAAATGGCTATTGTTTTGGGATGAAGAAGGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR TCA 90 bp ACAGCTTATTTCCTCCATGGGGAAAGCTACAGCCACTGGAGAGGTTTTGAAAGCAGGTTCTGTTCACAGTaGGGGCCTCCCCAAGTGCCT +
Preference number: 4 (lower is better)
Translates to: TAYFLHGESYSHWRGFESRFCSQ*GPPQVP
Trigger: AGGCACTTGGGGAGGCCCTCACTGTGAACAGAACCT...GCTTTCAAAACCTCTCCAGTGGCTGTAGCTTTCCCCATGGAGGAAATAAGCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR GCA 90 bp CTGGGATCAAAGGTGTGTGCCACCACGCCTGTACTTTGTGGTCTTTATAAGCATTCCCACTCAGCACGCTaGCCAGCAACTCCATCACAG +
Preference number: 4 (lower is better)
Translates to: LGSKVCATTPVLCGLYKHSHSAR*PATPSQ
Trigger: CTGTGATGGAGTTGCTGGGCAGCGTGCTGAGTGGGA...ATGCTTATAAAGACCACAAAGTACAGGCGTGGTGGCACACACCTTTGATCCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR GCA 90 bp GGGAGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGTGAGTACTGGAAAACATGAGTaGTTTCAGGCTCCTGTTCTG +
Preference number: 4 (lower is better)
Translates to: GSVQGRNTTETDGASHVSTGKHE*FQAPVL
Trigger: CAGAACAGGAGCCTGAAAGCACTCATGTTTTCCAGT...ACTCACATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp GCACAGCTTATTTCCTCCATGGGGAAAGCTACAGCCACTGGAGAGGTTTTGAAATGGAGATGGTCTGGTTaGAGACCAGGGCCTCAGCCA +
Preference number: 4 (lower is better)
Translates to: AQLISSMGKATATGEVLKWRWSG*RPGPQP
Trigger: TGGCTGAGGCCCTGGTCTCCAACCAGACCATCTCCA...TTTCAAAACCTCTCCAGTGGCTGTAGCTTTCCCCATGGAGGAAATAAGCTGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp CTGGGATCAAAGGTGTGTGCCACCACGCCTGTACTTTGTGGTCTTTATAAGCATCATTTGCCAAGGCCTTaGCTCCAGCTGCCCCAACGT +
Preference number: 4 (lower is better)
Translates to: LGSKVCATTPVLCGLYKHHLPRP*LQLPQR
Trigger: ACGTTGGGGCAGCTGGAGCCAAGGCCTTGGCAAATG...ATGCTTATAAAGACCACAAAGTACAGGCGTGGTGGCACACACCTTTGATCCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp AACACTACAGAGACTGATGGTGCCAGCCATGTGAGTGTGCAGGGCAGGAACACTATATGGTGCAGACCGTaGTTCTCAGACAGTGCAGAG +
Preference number: 4 (lower is better)
Translates to: NTTETDGASHVSVQGRNTIWCRP*FSDSAE
Trigger: CTCTGCACTGTCTGAGAACCACGGTCTGCACCATAT...AGTGTTCCTGCCCTGCACACTCACATGGCTGGCACCATCAGTCTCTGTAGTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR TCA 90 bp CTGGGATCAAAGGTGTGTGCCACCACGCCTGTACTTTGTGGTCTTTATAAGCATACTGCAGCGTCAGGATaGAGGAAGCCTTGTAGGACC +
Preference number: 4 (lower is better)
Translates to: LGSKVCATTPVLCGLYKHTAASG*RKPCRT
Trigger: GGTCCTACAAGGCTTCCTTCATCCTGACGCTGCAGT...ATGCTTATAAAGACCACAAAGTACAGGCGTGGTGGCACACACCTTTGATCCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR TCA 90 bp CTGGGATCAAAGGTGTGTGCCACCACGCCTGTACTTTGTGGTCTTTATAAGCATAAGTTCCACTGCAGGTaGAGGTGTGTGAGGGAGTGG +
Preference number: 4 (lower is better)
Translates to: LGSKVCATTPVLCGLYKHKFHCR*RCVREW
Trigger: CCACTCCCTCACACACCTTCACCTGCAGTGGAACTT...ATGCTTATAAAGACCACAAAGTACAGGCGTGGTGGCACACACCTTTGATCCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR TCA 90 bp TTCCCTTCTTCATCCCAAAACAATAGCCATTTTCCTTTGGCTGACCCTGGGCAGCCGCACCAGCTTGGATaGAGTTCCACTGCAGGTGAA +
Preference number: 4 (lower is better)
Translates to: FPSSSQNNSHFPLADPGQPHQLG*SSTAGE
Trigger: TTCACCTGCAGTGGAACTTCATCCAAGCTGGTGCGG...CTGCCCAGGGTCAGCCAAAGGAAAATGGCTATTGTTTTGGGATGAAGAAGGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR TCA 90 bp ACAGCTTATTTCCTCCATGGGGAAAGCTACAGCCACTGGAGAGGTTTTGAAAGCCCCATCCATCCCCAGTaGGTTCTCCTGGAGATTGAG +
Preference number: 4 (lower is better)
Translates to: TAYFLHGESYSHWRGFESPIHPQ*VLLEIE
Trigger: CTCAATCTCCAGGAGAACTCACTGGGGATGGATGGG...GCTTTCAAAACCTCTCCAGTGGCTGTAGCTTTCCCCATGGAGGAAATAAGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR GCA 90 bp GAGTCAGATCTCGTTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGGCTGCAGGAGACAGCTaGACAGAGTGTTCTGCAACA +
Preference number: 4 (lower is better)
Translates to: ESDLVMDGCEPPCGCWDLAAGDS*TECSAT
Trigger: TGTTGCAGAACACTCTGTGCAGCTGTCTCCTGCAGC...CAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAACGAGATCTGACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR GCA 90 bp ACAGCTTATTTCCTCCATGGGGAAAGCTACAGCCACTGGAGAGGTTTTGAAAGCCTGCTTCAGGGCATCTaGCATCTGCTGGGCTCCTAT +
Preference number: 4 (lower is better)
Translates to: TAYFLHGESYSHWRGFESLLQGI*HLLGSY
Trigger: ATAGGAGCCCAGCAGATGGCAGATGCCCTGAAGCAG...GCTTTCAAAACCTCTCCAGTGGCTGTAGCTTTCCCCATGGAGGAAATAAGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR GCA 90 bp GGTGCCAGCCATGTGAGTGTGCAGGGCAGGAACACTGTCATTATCTTGTCTTATTTCAGGCTCCTGTTCTaGTTCAGGGCATCTGCCATC +
Preference number: 4 (lower is better)
Translates to: GASHVSVQGRNTVIILSYFRLLF*FRASAI
Trigger: GATGGCAGATGCCCTGAAGCAGAACAGGAGCCTGAA...ATAAGACAAGATAATGACAGTGTTCCTGCCCTGCACACTCACATGGCTGGCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp AGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGGGAGTGTGTTGATCACGTTGCTTTaGAGGCTTAGAGAAGTTAGC +
Preference number: 4 (lower is better)
Translates to: SVQGRNTTETDGASHGSVLITLL*RLREVS
Trigger: GCTAACTTCTCTAAGCCTCCAAAGCAACGTGATCAA...CACACTCCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp GAGTCAGATCTCGTTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGGCATCTGCCATCTGCTaGGCTCCTATGAGCCCAATT +
Preference number: 4 (lower is better)
Translates to: ESDLVMDGCEPPCGCWDLASAIC*APMSPI
Trigger: AATTGGGCTCATAGGAGCCCAGCAGATGGCAGATGC...CAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAACGAGATCTGACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR TCA 90 bp TTAGCATTAACCTTTCGTTCATCTTCCCAGATTTCTCATATCTTCTCCATATGTGCTGGCCAGCCGGTGTaGGGGGCTGCCCAGTTCTGG +
Preference number: 4 (lower is better)
Translates to: LALTFRSSSQISHIFSICAGQPV*GAAQFW
Trigger: CCAGAACTGGGCAGCCCCTCACACCGGCTGGCCAGC...ACATATGGAGAAGATATGAGAAATCTGGGAAGATGAACGAAAGGTTAATGCTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR TCA 90 bp GACCCTTCCCTTCTTCATCCCAAAACAATAGCCATTTTCCTTTGGCTGACCCTGCTCCTTCTTTGGGTCTaGGCAGGCCATGGTATTGGA +
Preference number: 4 (lower is better)
Translates to: DPSLLHPKTIAIFLWLTLLLLWV*AGHGIG
Trigger: TCCAATACCATGGCCTGCTCAGACCCAAAGAAGGAG...CAGGGTCAGCCAAAGGAAAATGGCTATTGTTTTGGGATGAAGAAGGGAAGGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR GCA 90 bp AGTGTGCAGGGCAGGAACACTGTCATTATCTTGTCTTATGTTCTTTTGAGTTGGGCCGGTGTGAGGGGCTaGCCAGTTCTGGGTCATTTC +
Preference number: 4 (lower is better)
Translates to: SVQGRNTVIILSYVLLSWAGVRG*PVLGHF
Trigger: GAAATGACCCAGAACTGGGCAGCCCCTCACACCGGC...CCAACTCAAAAGAACATAAGACAAGATAATGACAGTGTTCCTGCCCTGCACACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR GCA 90 bp GGCAAGTTAATGTGCTTAGTGGGCTTGAAGTCTGCAGAGACTGGTGCCAGCTGTAAAAGGCTGGTACAGTaGACATCAGATACAGAGCCC +
Preference number: 4 (lower is better)
Translates to: GKLMCLVGLKSAETGASCKRLVQ*TSDTEP
Trigger: GGGCTCTGTATCTGATGTGCACTGTACCAGCCTTTT...ACAGCTGGCACCAGTCTCTGCAGACTTCAAGCCCACTAAGCACATTAACTTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CCA 90 bp AGTGTGCAGGGCAGGAACACTGTCATTATCTTGTCTTATGTTCTTTTGAGTTGGCAGGAGGACTCTGTCTaGGGCTGTGGCCACCAGACT +
Preference number: 4 (lower is better)
Translates to: SVQGRNTVIILSYVLLSWQEDSV*GCGHQT
Trigger: AGTCTGGTGGCCACAGCCCCAGACAGAGTCCTCCTG...CCAACTCAAAAGAACATAAGACAAGATAATGACAGTGTTCCTGCCCTGCACACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CCA 90 bp TGCAGAGAGCAGAGGTCTCTGAGAAGAAGCTTCTGGCTGAGTCTGCATGGTCCTGAGCCTACAAAAGGCTaGTACAGTGCACATCAGATA +
Preference number: 4 (lower is better)
Translates to: CREQRSLRRSFWLSLHGPEPTKG*YSAHQI
Trigger: TATCTGATGTGCACTGTACCAGCCTTTTGTAGGCTC...AGGACCATGCAGACTCAGCCAGAAGCTTCTTCTCAGAGACCTCTGCTCTCTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CCA 90 bp AGTGTGCAGGGCAGGAACACTGTCATTATCTTGTCTTATGTTCTTTTGAGTTGGTGGGGCAGCAGGCTCTaGAGGACATGCTGGCTGAGA +
Preference number: 4 (lower is better)
Translates to: SVQGRNTVIILSYVLLSWWGSRL*RTCWLR
Trigger: TCTCAGCCAGCATGTCCTCCAGAGCCTGCTGCCCCA...CCAACTCAAAAGAACATAAGACAAGATAATGACAGTGTTCCTGCCCTGCACACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CCA 90 bp GGCAAGTTAATGTGCTTAGTGGGCTTGAAGTCTGCAGAGACTGGTGCCAGCTGTTCTGTAGCTGTAGCATaGAGATGGTCTGGTTGGAGA +
Preference number: 4 (lower is better)
Translates to: GKLMCLVGLKSAETGASCSVAVA*RWSGWR
Trigger: TCTCCAACCAGACCATCTCCATGCTACAGCTACAGA...ACAGCTGGCACCAGTCTCTGCAGACTTCAAGCCCACTAAGCACATTAACTTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp TCTTGTTTCAGTCAGACAATGGAAGAAATTTGCCACAGGGAAGCACAGCTTATTGCCTCCCCAAGTGCCTaGGCCCCTTGGCTACCAATG +
Preference number: 4 (lower is better)
Translates to: SCFSQTMEEICHREAQLIASPSA*APWLPM
Trigger: CATTGGTAGCCAAGGGGCCCAGGCACTTGGGGAGGC...AATAAGCTGTGCTTCCCTGTGGCAAATTTCTTCCATTGTCTGACTGAAACAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp TTCCCTTCTTCATCCCAAAACAATAGCCATTTTCCTTTGGCTGACCCTGGGCAGCAGAGGCAACAAATATaGCCCCATCCATCCCCAGTG +
Preference number: 4 (lower is better)
Translates to: FPSSSQNNSHFPLADPGQQRQQI*PHPSPV
Trigger: CACTGGGGATGGATGGGGCCATATTTGTTGCCTCTG...CTGCCCAGGGTCAGCCAAAGGAAAATGGCTATTGTTTTGGGATGAAGAAGGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR TCA 90 bp GAGTCAGATCTCGTTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAGCTTCCCCAATGCTTaGGAAGATGGATTGGATGAG +
Preference number: 4 (lower is better)
Translates to: ESDLVMDGCEPPCGCWDLSFPNA*EDGLDE
Trigger: CTCATCCAATCCATCTTCTCAAGCATTGGGGAAGCT...CAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAACGAGATCTGACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR GCA 90 bp TGCAGAGAGCAGAGGTCTCTGAGAAGAAGCTTCTGGCTGAGTCTGCATGGTCCTGAGGTCCACTCCAAATaGCTTCATGTCTTGTTCATA +
Preference number: 4 (lower is better)
Translates to: CREQRSLRRSFWLSLHGPEVHSK*LHVLFI
Trigger: TATGAACAAGACATGAAGGCATTTGGAGTGGACCTC...AGGACCATGCAGACTCAGCCAGAAGCTTCTTCTCAGAGACCTCTGCTCTCTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR GCA 90 bp TGCAGAGAGCAGAGGTCTCTGAGAAGAAGCTTCTGGCTGAGTCTGCATGGTCCTGATGGCCCTCTTGGATaGACTATAGTAATATGTAGC +
Preference number: 4 (lower is better)
Translates to: CREQRSLRRSFWLSLHGPDGPLG*TIVICS
Trigger: GCTACATATTACTATAGTGCATCCAAGAGGGCCATC...AGGACCATGCAGACTCAGCCAGAAGCTTCTTCTCAGAGACCTCTGCTCTCTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR GCA 90 bp GAGTCAGATCTCGTTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGGTGGTTCTCAGACAGTaGAGAGGCAACAAATATGGC +
Preference number: 4 (lower is better)
Translates to: ESDLVMDGCEPPCGCWDLVVLRQ*RGNKYG
Trigger: GCCATATTTGTTGCCTCTGCACTGTCTGAGAACCAC...CAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAACGAGATCTGACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp GGCAAGTTAATGTGCTTAGTGGGCTTGAAGTCTGCAGAGACTGGTGCCAGCTGTCCAGACAGAAATTTCTaGAAAGAGGTTGCCTCGGAT +
Preference number: 4 (lower is better)
Translates to: GKLMCLVGLKSAETGASCPDRNF*KEVASD
Trigger: ATCCGAGGCAACCTCTTTCCAGAAATTTCTGTCTGG...ACAGCTGGCACCAGTCTCTGCAGACTTCAAGCCCACTAAGCACATTAACTTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
3UTR CAA 72 bp TTGTCACCTTTGGGCAAGTTAATGTGCTTAGTGGGCTaGAAGTCTGCAGAGACTGGTGCCAGCTGTATGAGT +
Preference number: 4 (lower is better)
Translates to: LSPLGKLMCLVG*KSAETGASCMS
Trigger: ACTCATACAGCTGGCACCAGTCTCTGCAGACTTCAAGCCCACTAAGCACATTAACTTGCCCAAAGGTGACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR TCA 90 bp CTGGGATCAAAGGTGTGTGCCACCACGCCTGTACTTTGTGGTCTTTATAAGCATTCTGCTGGGCTCCTATaGGCCCAATTAAGTTCTTCT +
Preference number: 4 (lower is better)
Translates to: LGSKVCATTPVLCGLYKHSAGLL*AQLSSS
Trigger: AGAAGAACTTAATTGGGCTCATAGGAGCCCAGCAGA...ATGCTTATAAAGACCACAAAGTACAGGCGTGGTGGCACACACCTTTGATCCCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR TCA 90 bp TTCCCTTCTTCATCCCAAAACAATAGCCATTTTCCTTTGGCTGACCCTGGGCAGTCACTCCCATGTCACTaGTGGAATTGCTCTGTAGGT +
Preference number: 4 (lower is better)
Translates to: FPSSSQNNSHFPLADPGQSLPCH*WNCSVG
Trigger: ACCTACAGAGCAATTCCATCAGTGACATGGGAGTGA...CTGCCCAGGGTCAGCCAAAGGAAAATGGCTATTGTTTTGGGATGAAGAAGGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR GCA 90 bp TCTTGTTTCAGTCAGACAATGGAAGAAATTTGCCACAGGGAAGCACAGCTTATTAGGGCATCTGCCATCTaGTGGGCTCCTATGAGCCCA +
Preference number: 4 (lower is better)
Translates to: SCFSQTMEEICHREAQLIRASAI*WAPMSP
Trigger: TGGGCTCATAGGAGCCCAGCAGATGGCAGATGCCCT...AATAAGCTGTGCTTCCCTGTGGCAAATTTCTTCCATTGTCTGACTGAAACAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp GGCAAGTTAATGTGCTTAGTGGGCTTGAAGTCTGCAGAGACTGGTGCCAGCTGTTTGATCACGTTGCTTTaGAGGCTTAGAGAAGTTAGC +
Preference number: 4 (lower is better)
Translates to: GKLMCLVGLKSAETGASCLITLL*RLREVS
Trigger: GCTAACTTCTCTAAGCCTCCAAAGCAACGTGATCAA...ACAGCTGGCACCAGTCTCTGCAGACTTCAAGCCCACTAAGCACATTAACTTGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR TCA 90 bp TCTTGTTTCAGTCAGACAATGGAAGAAATTTGCCACAGGGAAGCACAGCTTATTAGCTCACACAGGGTCTaGGGCAATGGCAGCTCTATG +
Preference number: 4 (lower is better)
Translates to: SCFSQTMEEICHREAQLISSHRV*GNGSSM
Trigger: CATAGAGCTGCCATTGCCTCAGACCCTGTGTGAGCT...AATAAGCTGTGCTTCCCTGTGGCAAATTTCTTCCATTGTCTGACTGAAACAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR TCA 90 bp TTCCTTTGTTTTCTTGAGATGGGATTTTATGTAGCACAAACTGGTCTTGAATTCTTCCTGCAGAGAGCTTaGGTGAGGGCCTGGGCTCCC +
Preference number: 4 (lower is better)
Translates to: FLCFLEMGFYVAQTGLEFFLQRA*VRAWAP
Trigger: GGGAGCCCAGGCCCTCACTCAAGCTCTCTGCAGGAA...GAATTCAAGACCAGTTTGTGCTACATAAAATCCCATCTCAAGAAAACAAAGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180200.8
CDS-3UTR GCA 90 bp TCTTGTTTCAGTCAGACAATGGAAGAAATTTGCCACAGGGAAGCACAGCTTATTGGTCATTTCCCACCCTaGTCAGCAGAGCCTCAGAGT +
Preference number: 4 (lower is better)
Translates to: SCFSQTMEEICHREAQLIGHFPP*SAEPQS
Trigger: ACTCTGAGGCTCTGCTGAGCAGGGTGGGAAATGACC...AATAAGCTGTGCTTCCCTGTGGCAAATTTCTTCCATTGTCTGACTGAAACAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CCA 90 bp TTTCTTGTTTCAGTCAGACAATGGAAGAAATTTGCCACAGGGAAGCACAGCTTAACCTTTTCCTTATCCTaGCCCTCCCCACCAAGAGCC +
Preference number: 4 (lower is better)
Translates to: FLVSVRQWKKFATGKHSLTFSLS*PSPPRA
Trigger: GGCTCTTGGTGGGGAGGGCCAGGATAAGGAAAAGGT...TAAGCTGTGCTTCCCTGTGGCAAATTTCTTCCATTGTCTGACTGAAACAAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CCA 90 bp GCTATTCTTGGCTTAAATCTAATCTCTTTGTCAAGGCTGCATTTGTCTCGTTACCTGGCCGCACCAGCTTaGATGAAGTTCCACTGCAGG +
Preference number: 4 (lower is better)
Translates to: AILGLNLISLSRLHLSRYLAAPA*MKFHCR
Trigger: CCTGCAGTGGAACTTCATCCAAGCTGGTGCGGCCAG...GTAACGAGACAAATGCAGCCTTGACAAAGAGATTAGATTTAAGCCAAGAATAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp TTACAGGCTATTCTTGGCTTAAATCTAATCTCTTTGTCAAGGCTGCATTTGTCTCATTTGCCAAGGCCTTaGCTCCAGCTGCCCCAACGT +
Preference number: 4 (lower is better)
Translates to: LQAILGLNLISLSRLHLSHLPRP*LQLPQR
Trigger: ACGTTGGGGCAGCTGGAGCCAAGGCCTTGGCAAATG...AGACAAATGCAGCCTTGACAAAGAGATTAGATTTAAGCCAAGAATAGCCTGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180200.8
CDS-3UTR TCA 90 bp TTAGCATTAACCTTTCGTTCATCTTCCCAGATTTCTCATATCTTCTCCATATGTAGGTTCTGTTCACAGTaGGGGCCTCCCCAAGTGCCT +
Preference number: 4 (lower is better)
Translates to: LALTFRSSSQISHIFSICRFCSQ*GPPQVP
Trigger: AGGCACTTGGGGAGGCCCTCACTGTGAACAGAACCT...ACATATGGAGAAGATATGAGAAATCTGGGAAGATGAACGAAAGGTTAATGCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR TCA 90 bp GCTATTCTTGGCTTAAATCTAATCTCTTTGTCAAGGCTGCATTTGTCTCGTTACTGGGAGCGTTTGTCTTaGTGGCCTCTGAGATCATCC +
Preference number: 4 (lower is better)
Translates to: AILGLNLISLSRLHLSRYWERLS*WPLRSS
Trigger: GGATGATCTCAGAGGCCATCAAGACAAACGCTCCCA...GTAACGAGACAAATGCAGCCTTGACAAAGAGATTAGATTTAAGCCAAGAATAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180200.8
CDS-3UTR GCA 90 bp AGTGTGCAGGGCAGGAACACTGTCATTATCTTGTCTTATGTTCTTTTGAGTTGGACCTGTGTGAAGTCATaGTCCTTTAGCTGCAGGTCT +
Preference number: 4 (lower is better)
Translates to: SVQGRNTVIILSYVLLSWTCVKS*SFSCRS
Trigger: AGACCTGCAGCTAAAGGAGCATGACTTCACACAGGT...CCAACTCAAAAGAACATAAGACAAGATAATGACAGTGTTCCTGCCCTGCACACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CCA 90 bp TCTTGTTTCAGTCAGACAATGGAAGAAATTTGCCACAGGGAAGCACAGCTTATTAGCAGGCCATGGTATTaGAGAATTCCAGGGGTGTCT +
Preference number: 4 (lower is better)
Translates to: SCFSQTMEEICHREAQLISRPWY*RIPGVS
Trigger: AGACACCCCTGGAATTCTCCAATACCATGGCCTGCT...AATAAGCTGTGCTTCCCTGTGGCAAATTTCTTCCATTGTCTGACTGAAACAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CCA 90 bp CTGGGATCAAAGGTGTGTGCCACCACGCCTGTACTTTGTGGTCTTTATAAGCATCAAAGATGGCCCTCTTaGATGCACTATAGTAATATG +
Preference number: 4 (lower is better)
Translates to: LGSKVCATTPVLCGLYKHQRWPS*MHYSNM
Trigger: CATATTACTATAGTGCATCCAAGAGGGCCATCTTTG...ATGCTTATAAAGACCACAAAGTACAGGCGTGGTGGCACACACCTTTGATCCCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
3UTR CAA 72 bp GAACACTGTCATTATCTTGTCTTATGTTCTTTTGAGTaGGGTCATGTGGAGACCCTGGGGATGAGTAAGCCA +
Preference number: 4 (lower is better)
Translates to: EHCHYLVLCSFE*GHVETLGMSKP
Trigger: TGGCTTACTCATCCCCAGGGTCTCCACATGACCCAACTCAAAAGAACATAAGACAAGATAATGACAGTGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR CAA 72 bp CATGTGAGTGTGCAGGGCAGGAACACTGTCATTATCTaGTCTTATGTTCTTTTGAGTTGGGTCATGTGGAGA +
Preference number: 4 (lower is better)
Translates to: HVSVQGRNTVII*SYVLLSWVMWR
Trigger: TCTCCACATGACCCAACTCAAAAGAACATAAGACAAGATAATGACAGTGTTCCTGCCCTGCACACTCACATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR TCA 90 bp TTTCTTGTTTCAGTCAGACAATGGAAGAAATTTGCCACAGGGAAGCACAGCTTATCACTCCCATGTCACTaGTGGAATTGCTCTGTAGGT +
Preference number: 4 (lower is better)
Translates to: FLVSVRQWKKFATGKHSLSLPCH*WNCSVG
Trigger: ACCTACAGAGCAATTCCATCAGTGACATGGGAGTGA...TAAGCTGTGCTTCCCTGTGGCAAATTTCTTCCATTGTCTGACTGAAACAAGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR TCA 90 bp AACCTTTCGTTCATCTTCCCAGATTTCTCATATCTTCTCCATATGTATCTAAGGTGGGAGCGTTTGTCTTaGTGGCCTCTGAGATCATCC +
Preference number: 4 (lower is better)
Translates to: NLSFIFPDFSYLLHMYLRWERLS*WPLRSS
Trigger: GGATGATCTCAGAGGCCATCAAGACAAACGCTCCCA...CCTTAGATACATATGGAGAAGATATGAGAAATCTGGGAAGATGAACGAAAGGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp AGTGTGCAGGGCAGGAACACTGTCATTATCTTGTCTTATGTTCTTTTGAGTTGGATGTTAGTGATCAGGTaGTCTACCTGGATCTCCTTC +
Preference number: 4 (lower is better)
Translates to: SVQGRNTVIILSYVLLSWMLVIR*STWISF
Trigger: GAAGGAGATCCAGGTAGACCACCTGATCACTAACAT...CCAACTCAAAAGAACATAAGACAAGATAATGACAGTGTTCCTGCCCTGCACACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CCA 90 bp TTAGCATTAACCTTTCGTTCATCTTCCCAGATTTCTCATATCTTCTCCATATGTACAGGGTCCTGGAACTaGTTGTTGTCCAGCCTGAGG +
Preference number: 4 (lower is better)
Translates to: LALTFRSSSQISHIFSICTGSWN*LLSSLR
Trigger: CCTCAGGCTGGACAACAACCAGTTCCAGGACCCTGT...ACATATGGAGAAGATATGAGAAATCTGGGAAGATGAACGAAAGGTTAATGCTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR GCA 90 bp TTAGCATTAACCTTTCGTTCATCTTCCCAGATTTCTCATATCTTCTCCATATGTTTCAGGCTCCTGTTCTaGTTCAGGGCATCTGCCATC +
Preference number: 4 (lower is better)
Translates to: LALTFRSSSQISHIFSICFRLLF*FRASAI
Trigger: GATGGCAGATGCCCTGAAGCAGAACAGGAGCCTGAA...ACATATGGAGAAGATATGAGAAATCTGGGAAGATGAACGAAAGGTTAATGCTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR TCA 90 bp CCTTTCGTTCATCTTCCCAGATTTCTCATATCTTCTCCATATGTATCTAAGGATTCTGCTGGGCTCCTATaGGCCCAATTAAGTTCTTCT +
Preference number: 4 (lower is better)
Translates to: PFVHLPRFLISSPYVSKDSAGLL*AQLSSS
Trigger: AGAAGAACTTAATTGGGCTCATAGGAGCCCAGCAGA...ATCCTTAGATACATATGGAGAAGATATGAGAAATCTGGGAAGATGAACGAAAGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR TCA 90 bp TTACAGGCTATTCTTGGCTTAAATCTAATCTCTTTGTCAAGGCTGCATTTGTCTGTAGGTAGAGAGCAATaGGGGTTGTGTTCACCTTCA +
Preference number: 4 (lower is better)
Translates to: LQAILGLNLISLSRLHLSVGREQ*GLCSPS
Trigger: TGAAGGTGAACACAACCCTCATTGCTCTCTACCTAC...AGACAAATGCAGCCTTGACAAAGAGATTAGATTTAAGCCAAGAATAGCCTGTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp AACCTTTCGTTCATCTTCCCAGATTTCTCATATCTTCTCCATATGTATCTAAGGATCTGGCCAGGGCTTTaGCTCCTTTGTTACCAATCT +
Preference number: 4 (lower is better)
Translates to: NLSFIFPDFSYLLHMYLRIWPGL*LLCYQS
Trigger: AGATTGGTAACAAAGGAGCCAAAGCCCTGGCCAGAT...CCTTAGATACATATGGAGAAGATATGAGAAATCTGGGAAGATGAACGAAAGGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp AACCTTTCGTTCATCTTCCCAGATTTCTCATATCTTCTCCATATGTATCTAAGGTCTGTAGCTGTAGCATaGAGATGGTCTGGTTGGAGA +
Preference number: 4 (lower is better)
Translates to: NLSFIFPDFSYLLHMYLRSVAVA*RWSGWR
Trigger: TCTCCAACCAGACCATCTCCATGCTACAGCTACAGA...CCTTAGATACATATGGAGAAGATATGAGAAATCTGGGAAGATGAACGAAAGGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CCA 90 bp TTAGCATTAACCTTTCGTTCATCTTCCCAGATTTCTCATATCTTCTCCATATGTAAGTTCTCCAGGATCTaGTTCACCTTCAGGGCCTCA +
Preference number: 4 (lower is better)
Translates to: LALTFRSSSQISHIFSICKFSRI*FTFRAS
Trigger: TGAGGCCCTGAAGGTGAACCAGATCCTGGAGAACTT...ACATATGGAGAAGATATGAGAAATCTGGGAAGATGAACGAAAGGTTAATGCTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
3UTR CAA 72 bp GGATTACAGGCTATTCTTGGCTTAAATCTAATCTCTTaGTCAAGGCTGCATTTGTCTCGTTACTTGCTGTGT +
Preference number: 4 (lower is better)
Translates to: GLQAILGLNLIS*SRLHLSRYLLC
Trigger: ACACAGCAAGTAACGAGACAAATGCAGCCTTGACAAAGAGATTAGATTTAAGCCAAGAATAGCCTGTAATCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180200.8
CDS-3UTR GCA 90 bp TTTCTTGTTTCAGTCAGACAATGGAAGAAATTTGCCACAGGGAAGCACAGCTTAATAGTAATATGTAGCTaGCACAAATTCTTGCAGAGA +
Preference number: 4 (lower is better)
Translates to: FLVSVRQWKKFATGKHSLIVICS*HKFLQR
Trigger: TCTCTGCAAGAATTTGTGGCAGCTACATATTACTAT...TAAGCTGTGCTTCCCTGTGGCAAATTTCTTCCATTGTCTGACTGAAACAAGAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS GCA 90 bp ACCCCACGCGTGGCCTCCACCTGTGTGAAGTCATGCTCCTTTAGCTaGAGGTCTGTCAGGCCCTCGACCAGCATGAGGCTGGCCAGCCGG +
Preference number: 5 (lower is better)
Translates to: TPRVASTCVKSCSFS*RSVRPSTSMRLASR
Trigger: CCGGCTGGCCAGCCTCATGCTGGTCGAGGGCCTGACAGACCTGCAGCTAAAGGAGCATGACTTCACACAGGTGGAGGCCACGCGTGGGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CCA 90 bp CAGACATCTGCAGGAGGTAGGCCAGAGCAGTGCGGTGTGAGGGGCTaGTCATCCCAGCCAAGGTCCCACTCCGCATGGCCTCCTCCACAC +
Preference number: 5 (lower is better)
Translates to: QTSAGGRPEQCGVRG*SSQPRSHSAWPPPH
Trigger: GTGTGGAGGAGGCCATGCGGAGTGGGACCTTGGCTGGGATGACCAGCCCCTCACACCGCACTGCTCTGGCCTACCTCCTGCAGATGTCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS TCA 90 bp GCAGATGTCAGACATCTGCAGGAGGTAGGCCAGAGCAGTGCGGTGTaGGGGGCTGGTCATCCCAGCCAAGGTCCCACTCCGCATGGCCTC +
Preference number: 5 (lower is better)
Translates to: ADVRHLQEVGQSSAV*GAGHPSQGPTPHGL
Trigger: GAGGCCATGCGGAGTGGGACCTTGGCTGGGATGACCAGCCCCTCACACCGCACTGCTCTGGCCTACCTCCTGCAGATGTCTGACATCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS GCA 90 bp GCAGGGTGCCAGACCCCACGCGTGGCCTCCACCTGTGTGAAGTCATaGTCCTTTAGCTGCAGGTCTGTCAGGCCCTCGACCAGCATGAGG +
Preference number: 5 (lower is better)
Translates to: AGCQTPRVASTCVKS*SFSCRSVRPSTSMR
Trigger: CCTCATGCTGGTCGAGGGCCTGACAGACCTGCAGCTAAAGGAGCATGACTTCACACAGGTGGAGGCCACGCGTGGGGTCTGGCACCCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS GCA 90 bp CTGGGGAGCAGATGTCAGACATCTGCAGGAGGTAGGCCAGAGCAGTaGGGTGTGAGGGGCTGGTCATCCCAGCCAAGGTCCCACTCCGCA +
Preference number: 5 (lower is better)
Translates to: LGSRCQTSAGGRPEQ*GVRGWSSQPRSHSA
Trigger: TGCGGAGTGGGACCTTGGCTGGGATGACCAGCCCCTCACACCGCACTGCTCTGGCCTACCTCCTGCAGATGTCTGACATCTGCTCCCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS TCA 90 bp AGTCATGCTCCTTTAGCTGCAGGTCTGTCAGGCCCTCGACCAGCATaGGGCTGGCCAGCCGGTGTGAGGGGCTGCCCAGTTCTGGGTCAT +
Preference number: 5 (lower is better)
Translates to: SHAPLAAGLSGPRPA*GWPAGVRGCPVLGH
Trigger: ATGACCCAGAACTGGGCAGCCCCTCACACCGGCTGGCCAGCCTCATGCTGGTCGAGGGCCTGACAGACCTGCAGCTAAAGGAGCATGACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS GCA 90 bp GACAGAGGCAGGAAGAGCCTGTCCAGGGTGATAACTCTGGCAGGGTaGCAGACCCCACGCGTGGCCTCCACCTGTGTGAAGTCATGCTCC +
Preference number: 5 (lower is better)
Translates to: DRGRKSLSRVITLAG*QTPRVASTCVKSCS
Trigger: GGAGCATGACTTCACACAGGTGGAGGCCACGCGTGGGGTCTGGCACCCTGCCAGAGTTATCACCCTGGACAGGCTCTTCCTGCCTCTGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS-3UTR CAA 90 bp TGCAGGGCAGGAACACTGCAGAGACTCATGGTGCCAGCCATGGGAGTGTGCAGGAAGTGCCTGGGCCCCTaGGCTACCAATGGAGGCCAC +
Preference number: 5 (lower is better)
Translates to: CRAGTLQRLMVPAMGVCRKCLGP*ATNGGH
Trigger: GTGGCCTCCATTGGTAGCCAAGGGGCCCAGGCACTT...CCTGCACACTCCCATGGCTGGCACCATGAGTCTCTGCAGTGTTCCTGCCCTGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS CCA 90 bp GGTCTTGCCCACACCAGCCACTCCAATGGTGAGAGAGACTCGAGGTaGGATGGATACCCGGGACAGAGGCAGGAAGAGCCTGTCCAGGGT +
Preference number: 5 (lower is better)
Translates to: GLAHTSHSNGERDSR*DGYPGQRQEEPVQG
Trigger: ACCCTGGACAGGCTCTTCCTGCCTCTGTCCCGGGTATCCATCCCACCTCGAGTCTCTCTCACCATTGGAGTGGCTGGTGTGGGCAAGACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CCA 90 bp CTTCCATCCTTAGCTTGTGTGGCCCGCTGGGCTGCACACCTGAAATaGGCGAGGAAACCCAGTCTGGGCCAGGACATGCCACTCTCGGTG +
Preference number: 5 (lower is better)
Translates to: LPSLACVARWAAHLK*ARKPSLGQDMPLSV
Trigger: CACCGAGAGTGGCATGTCCTGGCCCAGACTGGGTTTCCTCGCCCATTTCAGGTGTGCAGCCCAGCGGGCCACACAAGCTAAGGATGGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS-3UTR CAA 90 bp CTGATGGTGCCAGCCATGGGAGTGTGCAGGGCAGGAACACTGCAGAGACTGATGGTTCCTGCAGAGAGCTaGAGTGAGGGCCTGGGCTCC +
Preference number: 5 (lower is better)
Translates to: LMVPAMGVCRAGTLQRLMVPAES*SEGLGS
Trigger: GGAGCCCAGGCCCTCACTCAAGCTCTCTGCAGGAAC...CATCAGTCTCTGCAGTGTTCCTGCCCTGCACACTCCCATGGCTGGCACCATCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS TCA 90 bp GGACGGCCAGCCTGGTGCGATACAAGTGACCCAGAGCCAGCCCCGTaGGCCTACAAAAGGCTGGTACAGTGCACATCAGATACAGAGCCC +
Preference number: 5 (lower is better)
Translates to: GRPAWCDTSDPEPAP*AYKRLVQCTSDTEP
Trigger: GGGCTCTGTATCTGATGTGCACTGTACCAGCCTTTTGTAGGCTCACGGGGCTGGCTCTGGGTCACTTGTATCGCACCAGGCTGGCCGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CCA 90 bp GCCCTTCCCAGCCAGCAGATCCACAAGGGCTTTCACCTGCTCAGCTaGGGAGCCAACACTGTAGGCCAGGCATGTCTCTCTGTCTGTCCA +
Preference number: 5 (lower is better)
Translates to: ALPSQQIHKGFHLLS*GANTVGQACLSVCP
Trigger: TGGACAGACAGAGAGACATGCCTGGCCTACAGTGTTGGCTCCCCAGCTGAGCAGGTGAAAGCCCTTGTGGATCTGCTGGCTGGGAAGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CCA 90 bp CTCGCCTTGGGACAACAGGGAGCCGGCCAGCAGAGTATTGACCCTTaGGGACAAGAGGCCAGAGAGGAAGCGCAGAAACACATCCAGCCT +
Preference number: 5 (lower is better)
Translates to: LALGQQGAGQQSIDP*GQEAREEAQKHIQP
Trigger: AGGCTGGATGTGTTTCTGCGCTTCCTCTCTGGCCTCTTGTCCCCAAGGGTCAATACTCTGCTGGCCGGCTCCCTGTTGTCCCAAGGCGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS-3UTR CAA 90 bp CCATGTGAGTGTGCAGGGCAGGAACACTGCAGAGACTCATGGTGCCAGCCATGGATGGAGATGGTCTGGTaGGAGACCAGGGCCTCAGCC +
Preference number: 5 (lower is better)
Translates to: PCECAGQEHCRDSWCQPWMEMVW*ETRASA
Trigger: GGCTGAGGCCCTGGTCTCCAACCAGACCATCTCCAT...CCATGGCTGGCACCATGAGTCTCTGCAGTGTTCCTGCCCTGCACACTCACATGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CAA 90 bp GAGACTTTGCTCCTGAGTGCCAGACCCTGGTGGCAGACCCTTCCCTTCTTCATCGCATTTGCCAAGGCCTaGGCTCCAGCTGCCCCAACG +
Preference number: 5 (lower is better)
Translates to: ETLLLSARPWWQTLPFFIAFAKA*APAAPT
Trigger: CGTTGGGGCAGCTGGAGCCAAGGCCTTGGCAAATGC...GATGAAGAAGGGAAGGGTCTGCCACCAGGGTCTGGCACTCAGGAGCAAAGTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS TCA 90 bp AATGCCTCACTAGCGTGGTCTTGCCCACACCAGCCACTCCAATGGTaGGAGAGACTCGAGGTGGGATGGATACCCGGGACAGAGGCAGGA +
Preference number: 5 (lower is better)
Translates to: NASLAWSCPHQPLQW*ERLEVGWIPGTEAG
Trigger: TCCTGCCTCTGTCCCGGGTATCCATCCCACCTCGAGTCTCTCTCACCATTGGAGTGGCTGGTGTGGGCAAGACCACGCTAGTGAGGCATT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS TCA 90 bp CCCAGGGCCCTGGCCGCACCAGCTTGGATGAAGTTCCACTGCAGGTaGAGGTGTGTGAGGGAGTGGTTTTCTCCCACAGCTACTGCAATG +
Preference number: 5 (lower is better)
Translates to: PRALAAPAWMKFHCR*RCVREWFSPTATAM
Trigger: CATTGCAGTAGCTGTGGGAGAAAACCACTCCCTCACACACCTTCACCTGCAGTGGAACTTCATCCAAGCTGGTGCGGCCAGGGCCCTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS TCA 90 bp GGGCCCCTTGGCTACCAATGGAGGCCACCTGTAGGTAGAGAGCAATaGGGGTTGTGTTCACCTTCAGTGCGCCAGCCACTGAGGAAGCTC +
Preference number: 5 (lower is better)
Translates to: GPLGYQWRPPVGREQ*GLCSPSVRQPLRKL
Trigger: GAGCTTCCTCAGTGGCTGGCGCACTGAAGGTGAACACAACCCTCATTGCTCTCTACCTACAGGTGGCCTCCATTGGTAGCCAAGGGGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CAA 90 bp AACACTACAGAGACTGATGGTGCCAGCCATGTGAGTGTGCAGGGCAGGAACACTACCCGTGAGAAGCCCTaGCCCACCTGTCCTCTGGCC +
Preference number: 5 (lower is better)
Translates to: NTTETDGASHVSVQGRNTTREKP*PTCPLA
Trigger: GGCCAGAGGACAGGTGGGCAAGGGCTTCTCACGGGT...AGTGTTCCTGCCCTGCACACTCACATGGCTGGCACCATCAGTCTCTGTAGTGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CAA 90 bp CATGGGAGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGGGCCTGGATCTCCTTCTTaGGGTCTGAGCAGGCCATGG +
Preference number: 5 (lower is better)
Translates to: HGSVQGRNTTETDGASHGPGSPS*GLSRPW
Trigger: CCATGGCCTGCTCAGACCCAAAGAAGGAGATCCAGG...CCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCCATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CAA 90 bp GAGACTTTGCTCCTGAGTGCCAGACCCTGGTGGCAGACCCTTCCCTTCTTCATCCCTGGCCGCACCAGCTaGGATGAAGTTCCACTGCAG +
Preference number: 5 (lower is better)
Translates to: ETLLLSARPWWQTLPFFIPGRTS*DEVPLQ
Trigger: CTGCAGTGGAACTTCATCCAAGCTGGTGCGGCCAGG...GATGAAGAAGGGAAGGGTCTGCCACCAGGGTCTGGCACTCAGGAGCAAAGTCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS TCA 90 bp AATGGCAGCTCTATGTCTTGGACGGCCAGCCTGGTGCGATACAAGTaGCCCAGAGCCAGCCCCGTGAGCCTACAAAAGGCTGGTACAGTG +
Preference number: 5 (lower is better)
Translates to: NGSSMSWTASLVRYK*PRASPVSLQKAGTV
Trigger: CACTGTACCAGCCTTTTGTAGGCTCACGGGGCTGGCTCTGGGTCACTTGTATCGCACCAGGCTGGCCGTCCAAGACATAGAGCTGCCATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS TCA 90 bp TCTGATGCTCGCCTTGGGACAACAGGGAGCCGGCCAGCAGAGTATTaGCCCTTGGGGACAAGAGGCCAGAGAGGAAGCGCAGAAACACAT +
Preference number: 5 (lower is better)
Translates to: SDARLGTTGSRPAEY*PLGTRGQRGSAETH
Trigger: ATGTGTTTCTGCGCTTCCTCTCTGGCCTCTTGTCCCCAAGGGTCAATACTCTGCTGGCCGGCTCCCTGTTGTCCCAAGGCGAGCATCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS TCA 90 bp GCTGTCAGGTCCAAGTGCTTCAGAGTGTTGTTCCTGCAGAGAGCTTaGGTGAGGGCCTGGGCTCCCTCTGGGCTGATGGAGTTTTCTCGC +
Preference number: 5 (lower is better)
Translates to: AVRSKCFRVLFLQRA*VRAWAPSGLMEFSR
Trigger: GCGAGAAAACTCCATCAGCCCAGAGGGAGCCCAGGCCCTCACTCAAGCTCTCTGCAGGAACAACACTCTGAAGCACTTGGACCTGACAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS GCA 90 bp AAGCTACAGAGGAGGCCAGGGTCTCTTCCCGCTGCAGGAGACAGCTaGACAGAGTGTTCTGCAACAGAGCGAGGTCCACTCCAAATGCCT +
Preference number: 5 (lower is better)
Translates to: KLQRRPGSLPAAGDS*TECSATERGPLQMP
Trigger: AGGCATTTGGAGTGGACCTCGCTCTGTTGCAGAACACTCTGTGCAGCTGTCTCCTGCAGCGGGAAGAGACCCTGGCCTCCTCTGTAGCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS GCA 90 bp AAACACATCCAGCCTTCCATCCTTAGCTTGTGTGGCCCGCTGGGCTaGACACCTGAAATGGGCGAGGAAACCCAGTCTGGGCCAGGACAT +
Preference number: 5 (lower is better)
Translates to: KHIQPSILSLCGPLG*TPEMGEETQSGPGH
Trigger: ATGTCCTGGCCCAGACTGGGTTTCCTCGCCCATTTCAGGTGTGCAGCCCAGCGGGCCACACAAGCTAAGGATGGAAGGCTGGATGTGTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS-3UTR CAA 90 bp CTGATGGTGCCAGCCATGGGAGTGTGCAGGGCAGGAACACTGCAGAGACTGATGGAGCAGGCCATGGTATaGGAGAATTCCAGGGGTGTC +
Preference number: 5 (lower is better)
Translates to: LMVPAMGVCRAGTLQRLMEQAMV*ENSRGV
Trigger: GACACCCCTGGAATTCTCCAATACCATGGCCTGCTC...CATCAGTCTCTGCAGTGTTCCTGCCCTGCACACTCCCATGGCTGGCACCATCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CAA 90 bp GATGGTGCCAGCCATGGGAGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGGGTCCTGGAACTGGTaGTTGTCCAGCCTGAGGCTT +
Preference number: 5 (lower is better)
Translates to: DGASHGSVQGRNTTETDGGSWNW*LSSLRL
Trigger: AAGCCTCAGGCTGGACAACAACCAGTTCCAGGACCC...ACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCCATGGCTGGCACCATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS TCA 90 bp TGGCTCCAGCTGCCCCAACGTCGTTTCCTCGTAAGTAGAGAGCAATaGGGGTTGTGTTCACCTTCAGTGCGCCAGCCACTGAGGAAGCTC +
Preference number: 5 (lower is better)
Translates to: WLQLPQRRFLVSREQ*GLCSPSVRQPLRKL
Trigger: GAGCTTCCTCAGTGGCTGGCGCACTGAAGGTGAACACAACCCTCATTGCTCTCTACTTACGAGGAAACGACGTTGGGGCAGCTGGAGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229884.2
CDS GCA 90 bp CCCAGTTCTGGGTCATTTCCCACCCTGCTCAGCAGAGCCTCAGAGTaGTTCGGTATCCTTGACTCATTGCTCTGGGATCCTAGTGGGGAG +
Preference number: 5 (lower is better)
Translates to: PSSGSFPTLLSRASE*FGILDSLLWDPSGE
Trigger: CTCCCCACTAGGATCCCAGAGCAATGAGTCAAGGATACCGAAGCACTCTGAGGCTCTGCTGAGCAGGGTGGGAAATGACCCAGAACTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS GCA 90 bp CTGCAGGTGAAGGTGTGTGAGGGAGTGGTTTTCTCCCACAGCTACTaGAATGGCCTGGGCACCTCGGTCATGGAGGAGATTAGCTGTCAG +
Preference number: 5 (lower is better)
Translates to: LQVKVCEGVVFSHSY*NGLGTSVMEEISCQ
Trigger: CTGACAGCTAATCTCCTCCATGACCGAGGTGCCCAGGCCATTGCAGTAGCTGTGGGAGAAAACCACTCCCTCACACACCTTCACCTGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS CCA 90 bp GCGATACAAGTGACCCAGAGCCAGCCCCGTGAGCCTACAAAAGGCTaGTACAGTGCACATCAGATACAGAGCCCTGTTGGCCTGCACTTG +
Preference number: 5 (lower is better)
Translates to: AIQVTQSQPREPTKG*YSAHQIQSPVGLHL
Trigger: CAAGTGCAGGCCAACAGGGCTCTGTATCTGATGTGCACTGTACCAGCCTTTTGTAGGCTCACGGGGCTGGCTCTGGGTCACTTGTATCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CCA 90 bp AGTGTTGTTCCTGCAGAGAGCTTGAGTGAGGGCCTGGGCTCCCTCTaGGCTGATGGAGTTTTCTCGCAGGTTGAGACTGGAGAGTGTCTG +
Preference number: 5 (lower is better)
Translates to: SVVPAESLSEGLGSL*ADGVFSQVETGECL
Trigger: CAGACACTCTCCAGTCTCAACCTGCGAGAAAACTCCATCAGCCCAGAGGGAGCCCAGGCCCTCACTCAAGCTCTCTGCAGGAACAACACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS CCA 90 bp AGGTGTGTGAGGGAGTGGTTTTCTCCCACAGCTACTGCAATGGCCTaGGCACCTCGGTCATGGAGGAGATTAGCTGTCAGGTCCAAGTGC +
Preference number: 5 (lower is better)
Translates to: RCVREWFSPTATAMA*APRSWRRLAVRSKC
Trigger: GCACTTGGACCTGACAGCTAATCTCCTCCATGACCGAGGTGCCCAGGCCATTGCAGTAGCTGTGGGAGAAAACCACTCCCTCACACACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CAA 90 bp AGTGTGCAGGGCAGGAACACTGCAGAGACTCATGGTGCCAGCCATGGGAGTGTGGATCTGGCCAGGGCTTaGGCTCCTTTGTTACCAATC +
Preference number: 5 (lower is better)
Translates to: SVQGRNTAETHGASHGSVDLARA*APLLPI
Trigger: GATTGGTAACAAAGGAGCCAAAGCCCTGGCCAGATC...CACACTCCCATGGCTGGCACCATGAGTCTCTGCAGTGTTCCTGCCCTGCACACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CAA 90 bp GAGACTGATGGTAACATCCGTGTGAGTGTGCAGGGCAGGAACACTGCAGAGACTATGGAGATGGTCTGGTaGGAGACCAGGGCCTCAGCC +
Preference number: 5 (lower is better)
Translates to: ETDGNIRVSVQGRNTAETMEMVW*ETRASA
Trigger: GGCTGAGGCCCTGGTCTCCAACCAGACCATCTCCAT...AGTCTCTGCAGTGTTCCTGCCCTGCACACTCACACGGATGTTACCATCAGTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CAA 90 bp GGCAAGTTAATGTGCTTAGTGGGCTTGAAGTCTGCAGAGACTGGTGCCAGCTGTGTTCCTGCAGAGAGCTaGAGTGAGGGCCTGGGCTCC +
Preference number: 5 (lower is better)
Translates to: GKLMCLVGLKSAETGASCVPAES*SEGLGS
Trigger: GGAGCCCAGGCCCTCACTCAAGCTCTCTGCAGGAAC...ACAGCTGGCACCAGTCTCTGCAGACTTCAAGCCCACTAAGCACATTAACTTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CAA 90 bp GAGACTGATGGTAACATCCGTGTGAGTGTGCAGGGCAGGAACACTGCAGAGACTCCTGGCCGCACCAGCTaGGATGAAGTTCCACTGCAG +
Preference number: 5 (lower is better)
Translates to: ETDGNIRVSVQGRNTAETPGRTS*DEVPLQ
Trigger: CTGCAGTGGAACTTCATCCAAGCTGGTGCGGCCAGG...AGTCTCTGCAGTGTTCCTGCCCTGCACACTCACACGGATGTTACCATCAGTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CAA 90 bp GGCAAGTTAATGTGCTTAGTGGGCTTGAAGTCTGCAGAGACTGGTGCCAGCTGTAAGTGCCTGGGCCCCTaGGCTACCAATGGAGGCCAC +
Preference number: 5 (lower is better)
Translates to: GKLMCLVGLKSAETGASCKCLGP*ATNGGH
Trigger: GTGGCCTCCATTGGTAGCCAAGGGGCCCAGGCACTT...ACAGCTGGCACCAGTCTCTGCAGACTTCAAGCCCACTAAGCACATTAACTTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CAA 90 bp CATGGGAGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGGGGAGTTCTCCTGGAGATaGAGTCTTCGGAGACTGGAG +
Preference number: 5 (lower is better)
Translates to: HGSVQGRNTTETDGASHGEFSWR*SLRRLE
Trigger: CTCCAGTCTCCGAAGACTCAATCTCCAGGAGAACTC...CCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS GCA 90 bp CCCTGCTCAGCAGAGCCTCAGAGTGCTTCGGTATCCTTGACTCATTaGTCTGGGATCCTAGTGGGGAGTCTGGCATTTTGTCCCGGACTT +
Preference number: 5 (lower is better)
Translates to: PCSAEPQSASVSLTH*SGILVGSLAFCPGL
Trigger: AAGTCCGGGACAAAATGCCAGACTCCCCACTAGGATCCCAGAGCAATGAGTCAAGGATACCGAAGCACTCTGAGGCTCTGCTGAGCAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS GCA 90 bp GCCAGGGTCTCTTCCCGCTGCAGGAGACAGCTGCACAGAGTGTTCTaGAACAGAGCGAGGTCCACTCCAAATGCCTTCATGTCTTGTTCA +
Preference number: 5 (lower is better)
Translates to: ARVSSRCRRQLHRVF*NRARSTPNAFMSCS
Trigger: TGAACAAGACATGAAGGCATTTGGAGTGGACCTCGCTCTGTTGCAGAACACTCTGTGCAGCTGTCTCCTGCAGCGGGAAGAGACCCTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CCA 90 bp TCTGGGCTGATGGAGTTTTCTCGCAGGTTGAGACTGGAGAGTGTCTaGTTACTGCAGAGGGCTCGCATCAGCACCGTCACTCCCATGTCA +
Preference number: 5 (lower is better)
Translates to: SGLMEFSRRLRLESV*LLQRARISTVTPMS
Trigger: TGACATGGGAGTGACGGTGCTGATGCGAGCCCTCTGCAGTAACCAGACACTCTCCAGTCTCAACCTGCGAGAAAACTCCATCAGCCCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CAA 90 bp TGCAGAGAGCAGAGGTCTCTGAGAAGAAGCTTCTGGCTGAGTCTGCATGGTCCTAATGTCCCCACCATTTaGCGAGCTCCCTGGGTCACC +
Preference number: 5 (lower is better)
Translates to: CREQRSLRRSFWLSLHGPNVPTI*RAPWVT
Trigger: GGTGACCCAGGGAGCTCGCAAAATGGTGGGGACATT...AGGACCATGCAGACTCAGCCAGAAGCTTCTTCTCAGAGACCTCTGCTCTCTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CAA 90 bp GCACAGCTTATTTCCTCCATGGGGAAAGCTACAGCCACTGGAGAGGTTTTGAAAGCTCTGATGCTCGCCTaGGGACAACAGGGAGCCGGC +
Preference number: 5 (lower is better)
Translates to: AQLISSMGKATATGEVLKALMLA*GQQGAG
Trigger: GCCGGCTCCCTGTTGTCCCAAGGCGAGCATCAGAGC...TTTCAAAACCTCTCCAGTGGCTGTAGCTTTCCCCATGGAGGAAATAAGCTGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS TCA 90 bp AGGCCAGTTCTGTGTGCCGCAGCTCACTTAGGCAGTACAAGACATTaGTGGCACGTGCACAGACTGCAGCGTCAGGATGAAGGAAGCCTT +
Preference number: 5 (lower is better)
Translates to: RPVLCAAAHLGSTRH*WHVHRLQRQDEGSL
Trigger: AAGGCTTCCTTCATCCTGACGCTGCAGTCTGTGCACGTGCCATCAATGTCTTGTACTGCCTAAGTGAGCTGCGGCACACAGAACTGGCCT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS TCA 90 bp CCAGGGCTTTGGCTCCTTTGTTACCAATCTGATTCTCAGCCAGGCTaGTCTTTCGAATGCGACAGTCCTTCCCACTCAGCACGCTGCCCA +
Preference number: 5 (lower is better)
Translates to: PGLWLLCYQSDSQPG*SFECDSPSHSARCP
Trigger: TGGGCAGCGTGCTGAGTGGGAAGGACTGTCGCATTCGAAAGATCAGCCTGGCTGAGAATCAGATTGGTAACAAAGGAGCCAAAGCCCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CCA 90 bp CTCAGCAGAGCCTCAGAGTGCTTCGGTATCCTTGACTCATTGCTCTaGGATCCTAGTGGGGAGTCTGGCATTTTGTCCCGGACTTGTAGC +
Preference number: 5 (lower is better)
Translates to: LSRASECFGILDSLL*DPSGESGILSRTCS
Trigger: GCTACAAGTCCGGGACAAAATGCCAGACTCCCCACTAGGATCCCAGAGCAATGAGTCAAGGATACCGAAGCACTCTGAGGCTCTGCTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CCA 90 bp GCCTCTGAGATCATCCTGGCAGCAGACTCCCCAATGGGATTCCCCTaGAGATTAATATGGTGCAGACCGTGGTTCTCAGACAGTGCAGAG +
Preference number: 5 (lower is better)
Translates to: ASEIILAADSPMGFP*RLIWCRPWFSDSAE
Trigger: CTCTGCACTGTCTGAGAACCACGGTCTGCACCATATTAATCTCCAGGGGAATCCCATTGGGGAGTCTGCTGCCAGGATGATCTCAGAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CAA 90 bp GATGGTGCCAGCCATGGGAGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTAACACGTATTTCTTCTaGACCAGCCCATGGAAGGCC +
Preference number: 5 (lower is better)
Translates to: DGASHGSVQGRNTTETDGNTYFF*TSPWKA
Trigger: GGCCTTCCATGGGCTGGTCAAGAAGAAATACGTGTT...ACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCCATGGCTGGCACCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CAA 90 bp TGCAGGGCAGGAACACTGCAGAGACTCATGGTGCCAGCCATGGGAGTGTGCAGGTCATCCTTGATCACGTaGCTTTGGAGGCTTAGAGAA +
Preference number: 5 (lower is better)
Translates to: CRAGTLQRLMVPAMGVCRSSLIT*LWRLRE
Trigger: TTCTCTAAGCCTCCAAAGCAACGTGATCAAGGATGA...CCTGCACACTCCCATGGCTGGCACCATGAGTCTCTGCAGTGTTCCTGCCCTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CAA 90 bp CATGGGAGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGGGCCTGTAAGTCTAAGGTaGTCAGGGTTCTGTTCAGCT +
Preference number: 5 (lower is better)
Translates to: HGSVQGRNTTETDGASHGPVSLR*SGFCSA
Trigger: AGCTGAACAGAACCCTGACAACCTTAGACTTACAGG...CCCATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS GCA 90 bp CTGGCAGCAGACTCCCCAATGGGATTCCCCTGGAGATTAATATGGTaGAGACCGTGGTTCTCAGACAGTGCAGAGGCAACAAATATGGCC +
Preference number: 5 (lower is better)
Translates to: LAADSPMGFPWRLIW*RPWFSDSAEATNMA
Trigger: GGCCATATTTGTTGCCTCTGCACTGTCTGAGAACCACGGTCTGCACCATATTAATCTCCAGGGGAATCCCATTGGGGAGTCTGCTGCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS CCA 90 bp AGGCCAGGCATGTCTCTCTGTCTGTCCACACCTCTTGCTTCCTCGTaGAGTCTGTGTTTGCAGCCAGAAGTTGTGAATACAGAGCCAGGA +
Preference number: 5 (lower is better)
Translates to: RPGMSLCLSTPLASS*SLCLQPEVVNTEPG
Trigger: TCCTGGCTCTGTATTCACAACTTCTGGCTGCAAACACAGACTCCACGAGGAAGCAAGAGGTGTGGACAGACAGAGAGACATGCCTGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CCA 90 bp CATCCTAAAGTACCAAGAGTAGAGCTCACACAGGGTCTGAGGCAATaGCAGCTCTATGTCTTGGACGGCCAGCCTGGTGCGATACAAGTG +
Preference number: 5 (lower is better)
Translates to: HPKVPRVELTQGLRQ*QLYVLDGQPGAIQV
Trigger: CACTTGTATCGCACCAGGCTGGCCGTCCAAGACATAGAGCTGCCATTGCCTCAGACCCTGTGTGAGCTCTACTCTTGGTACTTTAGGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CCA 90 bp ATGAGCCCAATTAAGTTCTTCTGTAGCTGTAGCATGGAGATGGTCTaGTTGGAGACCAGGGCCTCAGCCACGCACATGACACCGTCATCC +
Preference number: 5 (lower is better)
Translates to: MSPIKFFCSCSMEMV*LETRASATHMTPSS
Trigger: GGATGACGGTGTCATGTGCGTGGCTGAGGCCCTGGTCTCCAACCAGACCATCTCCATGCTACAGCTACAGAAGAACTTAATTGGGCTCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
ENSMUST00000229884.2
CDS CCA 90 bp ATGTCACTGATGGAATTGCTCTGTAGGTCTAAGTTCTCCAGGATCTaGTTCACCTTCAGGGCCTCAGCCAGGGCTATGGCACCTCTGTCG +
Preference number: 5 (lower is better)
Translates to: MSLMELLCRSKFSRI*FTFRASARAMAPLS
Trigger: CGACAGAGGTGCCATAGCCCTGGCTGAGGCCCTGAAGGTGAACCAGATCCTGGAGAACTTAGACCTACAGAGCAATTCCATCAGTGACAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
ENSMUST00000229884.2
CDS CCA 90 bp TGGTTTTCTCCCACAGCTACTGCAATGGCCTGGGCACCTCGGTCATaGAGGAGATTAGCTGTCAGGTCCAAGTGCTTCAGAGTGTTGTTC +
Preference number: 5 (lower is better)
Translates to: WFSPTATAMAWAPRS*RRLAVRSKCFRVLF
Trigger: GAACAACACTCTGAAGCACTTGGACCTGACAGCTAATCTCCTCCATGACCGAGGTGCCCAGGCCATTGCAGTAGCTGTGGGAGAAAACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS CCA 90 bp TCATCCCCTATGGCATTCTCCTGTAAGTTGAGACTGGAGAGTGTCTaGTTACTGCAGAGGGCTCGCATCAGCACCGTCACTCCCATGTCA +
Preference number: 5 (lower is better)
Translates to: SSPMAFSCKLRLESV*LLQRARISTVTPMS
Trigger: TGACATGGGAGTGACGGTGCTGATGCGAGCCCTCTGCAGTAACCAGACACTCTCCAGTCTCAACTTACAGGAGAATGCCATAGGGGATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229884.2
CDS-3UTR CAA 90 bp AACACTACAGAGACTGATGGTGCCAGCCATGTGAGTGTGCAGGGCAGGAACACTGGTATCCTTGACTCATaGCTCTGGGATCCTAGTGGG +
Preference number: 5 (lower is better)
Translates to: NTTETDGASHVSVQGRNTGILDS*LWDPSG
Trigger: CCCACTAGGATCCCAGAGCAATGAGTCAAGGATACC...AGTGTTCCTGCCCTGCACACTCACATGGCTGGCACCATCAGTCTCTGTAGTGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CAA 90 bp ACAGCTTATTTCCTCCATGGGGAAAGCTACAGCCACTGGAGAGGTTTTGAAAGCCTCACTAGCGTGGTCTaGCCCACACCAGCCACTCCA +
Preference number: 5 (lower is better)
Translates to: TAYFLHGESYSHWRGFESLTSVV*PTPATP
Trigger: TGGAGTGGCTGGTGTGGGCAAGACCACGCTAGTGAG...GCTTTCAAAACCTCTCCAGTGGCTGTAGCTTTCCCCATGGAGGAAATAAGCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CAA 90 bp AGTGTGCAGGGCAGGAACACTGCAGAGACTCATGGTGCCAGCCATGGGAGTGTGTTAACTTTAAAGCATTaGCCAAGGCCTTGGCTCCAG +
Preference number: 5 (lower is better)
Translates to: SVQGRNTAETHGASHGSVLTLKH*PRPWLQ
Trigger: CTGGAGCCAAGGCCTTGGCAAATGCTTTAAAGTTAA...CACACTCCCATGGCTGGCACCATGAGTCTCTGCAGTGTTCCTGCCCTGCACACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS TCA 90 bp AATGGGCGAGGAAACCCAGTCTGGGCCAGGACATGCCACTCTCGGTaGAGAGGTCAAAGATGGCCCTCTTGGATGCACTATAGTAATATG +
Preference number: 5 (lower is better)
Translates to: NGRGNPVWARTCHSR*RGQRWPSWMHYSNM
Trigger: CATATTACTATAGTGCATCCAAGAGGGCCATCTTTGACCTCTTCACCGAGAGTGGCATGTCCTGGCCCAGACTGGGTTTCCTCGCCCATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS TCA 90 bp GGTTACTGCAGAGGGCTCGCATCAGCACCGTCACTCCCATGTCACTaGTGGAATTGCTCTGTAGGTCTAAGTTCTCCAGGATCTGGTTCA +
Preference number: 5 (lower is better)
Translates to: GYCRGLASAPSLPCH*WNCSVGLSSPGSGS
Trigger: TGAACCAGATCCTGGAGAACTTAGACCTACAGAGCAATTCCATCAGTGACATGGGAGTGACGGTGCTGATGCGAGCCCTCTGCAGTAACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
ENSMUST00000229884.2
CDS TCA 90 bp TTATATTTCCACAGTGCATGTGGGAGCGTTTGTCTTGATGGCCTCTaGGATCATCCTGGCAGCAGACTCCCCAATGGGATTCCCCTGGAG +
Preference number: 5 (lower is better)
Translates to: LYFHSACGSVCLDGL*DHPGSRLPNGIPLE
Trigger: CTCCAGGGGAATCCCATTGGGGAGTCTGCTGCCAGGATGATCTCAGAGGCCATCAAGACAAACGCTCCCACATGCACTGTGGAAATATAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS CCA 90 bp GGTCTACCTGGATCTCCTTCTTTGGGTCTGAGCAGGCCATGGTATTaGAGAATTCCAGGGGTGTCTTACACTCATCCAAGCCATCCAGGA +
Preference number: 5 (lower is better)
Translates to: GLPGSPSLGLSRPWY*RIPGVSYTHPSHPG
Trigger: TCCTGGATGGCTTGGATGAGTGTAAGACACCCCTGGAATTCTCCAATACCATGGCCTGCTCAGACCCAAAGAAGGAGATCCAGGTAGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS-3UTR CAA 90 bp GAGACTTTGCTCCTGAGTGCCAGACCCTGGTGGCAGACCCTTCCCTTCTTCATCATTTCTGGAAAGAGGTaGCCTCGGATGATGTTAGTG +
Preference number: 5 (lower is better)
Translates to: ETLLLSARPWWQTLPFFIISGKR*PRMMLV
Trigger: CACTAACATCATCCGAGGCAACCTCTTTCCAGAAAT...GATGAAGAAGGGAAGGGTCTGCCACCAGGGTCTGGCACTCAGGAGCAAAGTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CAA 90 bp AGTGTGCAGGGCAGGAACACTGCAGAGACTCATGGTGCCAGCCATGGGAGTGTGATGTCACTGATGGAATaGCTCTGTAGGTCTAAGTTC +
Preference number: 5 (lower is better)
Translates to: SVQGRNTAETHGASHGSVMSLME*LCRSKF
Trigger: GAACTTAGACCTACAGAGCAATTCCATCAGTGACAT...CACACTCCCATGGCTGGCACCATGAGTCTCTGCAGTGTTCCTGCCCTGCACACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CAA 90 bp GGGAGTGTGCAGGGCAGGAACACTACAGAGACTGATGGTGCCAGCCATGTGAGTTTAACTTTAAAGCATTaGCCAAGGCCTTGGCTCCAG +
Preference number: 5 (lower is better)
Translates to: GSVQGRNTTETDGASHVSLTLKH*PRPWLQ
Trigger: CTGGAGCCAAGGCCTTGGCAAATGCTTTAAAGTTAA...ACTCACATGGCTGGCACCATCAGTCTCTGTAGTGTTCCTGCCCTGCACACTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS TCA 90 bp GACTCTGTCTGGGGCTGTGGCCACCAGACTAGCTTCCCCAATGCTTaGGAAGATGGATTGGATGAGTCTGTCTGCAGACAGTTTCTCATA +
Preference number: 5 (lower is better)
Translates to: DSVWGCGHQTSFPNA*EDGLDESVCRQFLI
Trigger: TATGAGAAACTGTCTGCAGACAGACTCATCCAATCCATCTTCTCAAGCATTGGGGAAGCTAGTCTGGTGGCCACAGCCCCAGACAGAGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CCA 90 bp GCCTCAGCCACGCACATGACACCGTCATCCTTGATCACGTTGCTTTaGAGGCTTAGAGAAGTTAGCGTTCGGTTTATCTTCAGAGCATCG +
Preference number: 5 (lower is better)
Translates to: ASATHMTPSSLITLL*RLREVSVRFIFRAS
Trigger: CGATGCTCTGAAGATAAACCGAACGCTAACTTCTCTAAGCCTCCAAAGCAACGTGATCAAGGATGACGGTGTCATGTGCGTGGCTGAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
ENSMUST00000229884.2
CDS CCA 90 bp ATCCTGGCAGCAGACTCCCCAATGGGATTCCCCTGGAGATTAATATaGTGCAGACCGTGGTTCTCAGACAGTGCAGAGGCAACAAATATG +
Preference number: 5 (lower is better)
Translates to: ILAADSPMGFPWRLI*CRPWFSDSAEATNM
Trigger: CATATTTGTTGCCTCTGCACTGTCTGAGAACCACGGTCTGCACCATATTAATCTCCAGGGGAATCCCATTGGGGAGTCTGCTGCCAGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CAA 90 bp AGTGTGCAGGGCAGGAACACTGTCATTATCTTGTCTTATGTTCTTTTGAGTTGGGCATTTGCCAAGGCCTaGGCTCCAGCTGCCCCAACG +
Preference number: 5 (lower is better)
Translates to: SVQGRNTVIILSYVLLSWAFAKA*APAAPT
Trigger: CGTTGGGGCAGCTGGAGCCAAGGCCTTGGCAAATGC...CCAACTCAAAAGAACATAAGACAAGATAATGACAGTGTTCCTGCCCTGCACACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS CCA 90 bp GGAAAGAGGTTGCCTCGGATGATGTTAGTGATCAGGTGGTCTACCTaGATCTCCTTCTTTGGGTCTGAGCAGGCCATGGTATTGGAGAAT +
Preference number: 5 (lower is better)
Translates to: GKRLPRMMLVIRWST*ISFFGSEQAMVLEN
Trigger: ATTCTCCAATACCATGGCCTGCTCAGACCCAAAGAAGGAGATCCAGGTAGACCACCTGATCACTAACATCATCCGAGGCAACCTCTTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS-3UTR CAA 90 bp GAGTCAGATCTCGTTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAGGCAGTACAAGACATaGATGGCACGTGCACAGACT +
Preference number: 5 (lower is better)
Translates to: ESDLVMDGCEPPCGCWDLRQYKT*MARAQT
Trigger: AGTCTGTGCACGTGCCATCAATGTCTTGTACTGCCT...CAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAACGAGATCTGACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS TCA 90 bp GTGTGCAGGGCAGGAACACTGTCATTATCTTGTCTTATGTTCTTTTaGGTTGGGTCATGTGGAGACCCGTGGTTCTCAGACAGTGCAGAG +
Preference number: 5 (lower is better)
Translates to: VCRAGTLSLSCLMFF*VGSCGDPWFSDSAE
Trigger: CTCTGCACTGTCTGAGAACCACGGGTCTCCACATGACCCAACTCAAAAGAACATAAGACAAGATAATGACAGTGTTCCTGCCCTGCACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229884.2
CDS CCA 90 bp GAAATTTCTGGAAAGAGGTTGCCTCGGATGATGTTAGTGATCAGGTaGTCTACCTGGATCTCCTTCTTTGGGTCTGAGCAGGCCATGGTA +
Preference number: 5 (lower is better)
Translates to: EISGKRLPRMMLVIR*STWISFFGSEQAMV
Trigger: TACCATGGCCTGCTCAGACCCAAAGAAGGAGATCCAGGTAGACCACCTGATCACTAACATCATCCGAGGCAACCTCTTTCCAGAAATTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CCA 90 bp CAGGGCAGGAACACTGTCATTATCTTGTCTTATGTTCTTTTGAGTTaGGTCATGTGGAGACCCGTGGTTCTCAGACAGTGCAGAGGCAAC +
Preference number: 5 (lower is better)
Translates to: QGRNTVIILSYVLLS*VMWRPVVLRQCRGN
Trigger: GTTGCCTCTGCACTGTCTGAGAACCACGGGTCTCCACATGACCCAACTCAAAAGAACATAAGACAAGATAATGACAGTGTTCCTGCCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229884.2
CDS-3UTR CAA 90 bp GAAGACTTGCAGAGAGCAGAGGTCTCTGAGAAGAAGCTTCTGGCTGAGTCTGCAATGTCACTGATGGAATaGCTCTGTAGGTCTAAGTTC +
Preference number: 5 (lower is better)
Translates to: EDLQRAEVSEKKLLAESAMSLME*LCRSKF
Trigger: GAACTTAGACCTACAGAGCAATTCCATCAGTGACAT...TGCAGACTCAGCCAGAAGCTTCTTCTCAGAGACCTCTGCTCTCTGCAAGTCTTC
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CAA 90 bp GCACAGCTTATTTCCTCCATGGGGAAAGCTACAGCCACTGGAGAGGTTTTGAAAAGCTGCCACAAATTCTaGCAGAGACAGGTGAATGAA +
Preference number: 5 (lower is better)
Translates to: AQLISSMGKATATGEVLKSCHKF*QRQVNE
Trigger: TTCATTCACCTGTCTCTGCAAGAATTTGTGGCAGCT...TTTCAAAACCTCTCCAGTGGCTGTAGCTTTCCCCATGGAGGAAATAAGCTGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CAA 90 bp TTCCCTTCTTCATCCCAAAACAATAGCCATTTTCCTTTGGCTGACCCTGGGCAGTCATCCTTGATCACGTaGCTTTGGAGGCTTAGAGAA +
Preference number: 5 (lower is better)
Translates to: FPSSSQNNSHFPLADPGQSSLIT*LWRLRE
Trigger: TTCTCTAAGCCTCCAAAGCAACGTGATCAAGGATGA...CTGCCCAGGGTCAGCCAAAGGAAAATGGCTATTGTTTTGGGATGAAGAAGGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS GCA 90 bp ACAGCTGCACAGAGTGTTCTGCAACAGAGCGAGGTCCACTCCAAATaGCTTCATGTCTTGTTCATAAAACACGTATTTCTTCTTGACCAG +
Preference number: 5 (lower is better)
Translates to: TAAQSVLQQSEVHSK*LHVLFIKHVFLLDQ
Trigger: CTGGTCAAGAAGAAATACGTGTTTTATGAACAAGACATGAAGGCATTTGGAGTGGACCTCGCTCTGTTGCAGAACACTCTGTGCAGCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS-3UTR CAA 90 bp TCTTGTTTCAGTCAGACAATGGAAGAAATTTGCCACAGGGAAGCACAGCTTATTGAGTTCTCCTGGAGATaGAGTCTTCGGAGACTGGAG +
Preference number: 5 (lower is better)
Translates to: SCFSQTMEEICHREAQLIEFSWR*SLRRLE
Trigger: CTCCAGTCTCCGAAGACTCAATCTCCAGGAGAACTC...AATAAGCTGTGCTTCCCTGTGGCAAATTTCTTCCATTGTCTGACTGAAACAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS GCA 90 bp GAGGTCAAAGATGGCCCTCTTGGATGCACTATAGTAATATGTAGCTaGCACAAATTCTTGCAGAGACAGGTGAATGAAGCAGTAAGCTAC +
Preference number: 5 (lower is better)
Translates to: EVKDGPLGCTIVICS*HKFLQRQVNEAVSY
Trigger: GTAGCTTACTGCTTCATTCACCTGTCTCTGCAAGAATTTGTGGCAGCTACATATTACTATAGTGCATCCAAGAGGGCCATCTTTGACCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CCA 90 bp AACACTGTCATTATCTTGTCTTATGTTCTTTTGAGTTGGGTCATGTaGAGACCCGTGGTTCTCAGACAGTGCAGAGGCAACAAATATGGC +
Preference number: 5 (lower is better)
Translates to: NTVIILSYVLLSWVM*RPVVLRQCRGNKYG
Trigger: GCCATATTTGTTGCCTCTGCACTGTCTGAGAACCACGGGTCTCCACATGACCCAACTCAAAAGAACATAAGACAAGATAATGACAGTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229884.2
CDS-3UTR CAA 90 bp AGTGTGCAGGGCAGGAACACTGTCATTATCTTGTCTTATGTTCTTTTGAGTTGGTGCTCCAGACACACTTaGATCTCTTCCTCAGTAAGG +
Preference number: 5 (lower is better)
Translates to: SVQGRNTVIILSYVLLSWCSRHT*ISSSVR
Trigger: CCTTACTGAGGAAGAGATCAAAGTGTGTCTGGAGCA...CCAACTCAAAAGAACATAAGACAAGATAATGACAGTGTTCCTGCCCTGCACACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CAA 90 bp TTAGCATTAACCTTTCGTTCATCTTCCCAGATTTCTCATATCTTCTCCATATGTGATCTGGCCAGGGCTTaGGCTCCTTTGTTACCAATC +
Preference number: 5 (lower is better)
Translates to: LALTFRSSSQISHIFSICDLARA*APLLPI
Trigger: GATTGGTAACAAAGGAGCCAAAGCCCTGGCCAGATC...ACATATGGAGAAGATATGAGAAATCTGGGAAGATGAACGAAAGGTTAATGCTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS-3UTR CAA 90 bp TTAGCATTAACCTTTCGTTCATCTTCCCAGATTTCTCATATCTTCTCCATATGTTCGTGGAGTCTGTGTTaGCAGCCAGAAGTTGTGAAT +
Preference number: 5 (lower is better)
Translates to: LALTFRSSSQISHIFSICSWSLC*QPEVVN
Trigger: ATTCACAACTTCTGGCTGCAAACACAGACTCCACGA...ACATATGGAGAAGATATGAGAAATCTGGGAAGATGAACGAAAGGTTAATGCTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS-3UTR CAA 90 bp TTAGCATTAACCTTTCGTTCATCTTCCCAGATTTCTCATATCTTCTCCATATGTCCTGTAAGTCTAAGGTaGTCAGGGTTCTGTTCAGCT +
Preference number: 5 (lower is better)
Translates to: LALTFRSSSQISHIFSICPVSLR*SGFCSA
Trigger: AGCTGAACAGAACCCTGACAACCTTAGACTTACAGG...ACATATGGAGAAGATATGAGAAATCTGGGAAGATGAACGAAAGGTTAATGCTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS TCA 72 bp CAGGCCCTCGACCAGCATGAGGCTGGCCAGCCGGTGTaGGGGGCTGCCCAGTTCTGGGTCATTTCCCACCCT +
Preference number: 6 (lower is better)
Translates to: QALDQHEAGQPV*GAAQFWVISHP
Trigger: AGGGTGGGAAATGACCCAGAACTGGGCAGCCCCTCACACCGGCTGGCCAGCCTCATGCTGGTCGAGGGCCTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CCA 72 bp GCAGGAGGTAGGCCAGAGCAGTGCGGTGTGAGGGGCTaGTCATCCCAGCCAAGGTCCCACTCCGCATGGCCT +
Preference number: 6 (lower is better)
Translates to: AGGRPEQCGVRG*SSQPRSHSAWP
Trigger: AGGCCATGCGGAGTGGGACCTTGGCTGGGATGACCAGCCCCTCACACCGCACTGCTCTGGCCTACCTCCTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS TCA 72 bp CCTTTAGCTGCAGGTCTGTCAGGCCCTCGACCAGCATaGGGCTGGCCAGCCGGTGTGAGGGGCTGCCCAGTT +
Preference number: 6 (lower is better)
Translates to: PLAAGLSGPRPA*GWPAGVRGCPV
Trigger: AACTGGGCAGCCCCTCACACCGGCTGGCCAGCCTCATGCTGGTCGAGGGCCTGACAGACCTGCAGCTAAAGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS TCA 72 bp AGACATCTGCAGGAGGTAGGCCAGAGCAGTGCGGTGTaGGGGGCTGGTCATCCCAGCCAAGGTCCCACTCCG +
Preference number: 6 (lower is better)
Translates to: RHLQEVGQSSAV*GAGHPSQGPTP
Trigger: CGGAGTGGGACCTTGGCTGGGATGACCAGCCCCTCACACCGCACTGCTCTGGCCTACCTCCTGCAGATGTCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS GCA 72 bp CAGCCTTCCATCCTTAGCTTGTGTGGCCCGCTGGGCTaGACACCTGAAATGGGCGAGGAAACCCAGTCTGGG +
Preference number: 6 (lower is better)
Translates to: QPSILSLCGPLG*TPEMGEETQSG
Trigger: CCCAGACTGGGTTTCCTCGCCCATTTCAGGTGTGCAGCCCAGCGGGCCACACAAGCTAAGGATGGAAGGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS GCA 72 bp AGATGTCAGACATCTGCAGGAGGTAGGCCAGAGCAGTaGGGTGTGAGGGGCTGGTCATCCCAGCCAAGGTCC +
Preference number: 6 (lower is better)
Translates to: RCQTSAGGRPEQ*GVRGWSSQPRS
Trigger: GGACCTTGGCTGGGATGACCAGCCCCTCACACCGCACTGCTCTGGCCTACCTCCTGCAGATGTCTGACATCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CCA 72 bp CCCTGGGGAACCTATGTTGTCTCCTTCCTGCCATGGTaGCTGCTCCAGGGTGCTAAAGGGCTCCGCCTGCAT +
Preference number: 6 (lower is better)
Translates to: PWGTYVVSFLPW*LLQGAKGLRLH
Trigger: ATGCAGGCGGAGCCCTTTAGCACCCTGGAGCAGCCACCATGGCAGGAAGGAGACAACATAGGTTCCCCAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS CCA 72 bp TTAGCTTGTGTGGCCCGCTGGGCTGCACACCTGAAATaGGCGAGGAAACCCAGTCTGGGCCAGGACATGCCA +
Preference number: 6 (lower is better)
Translates to: LACVARWAAHLK*ARKPSLGQDMP
Trigger: TGGCATGTCCTGGCCCAGACTGGGTTTCCTCGCCCATTTCAGGTGTGCAGCCCAGCGGGCCACACAAGCTAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CCA 72 bp AAGGTTCTGTTCACAGTGAGGGCCTCCCCAAGTGCCTaGGCCCCTTGGCTACCAATGGAGGCCACCTGTAGG +
Preference number: 6 (lower is better)
Translates to: KVLFTVRASPSA*APWLPMEATCR
Trigger: CCTACAGGTGGCCTCCATTGGTAGCCAAGGGGCCCAGGCACTTGGGGAGGCCCTCACTGTGAACAGAACCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS CAA 72 bp CCATGGAAGGCCAGGCGGCCCAATGTCCCCACCATTTaGCGAGCTCCCTGGGTCACCTGCTTGATCCTAGGA +
Preference number: 6 (lower is better)
Translates to: PWKARRPNVPTI*RAPWVTCLILG
Trigger: TCCTAGGATCAAGCAGGTGACCCAGGGAGCTCGCAAAATGGTGGGGACATTGGGCCGCCTGGCCTTCCATGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CAA 72 bp CTGGAGTGCTTGTCCCAGGGCCCTGGCCGCACCAGCTaGGATGAAGTTCCACTGCAGGTGAAGGTGTGTGAG +
Preference number: 6 (lower is better)
Translates to: LECLSQGPGRTS*DEVPLQVKVCE
Trigger: CTCACACACCTTCACCTGCAGTGGAACTTCATCCAAGCTGGTGCGGCCAGGGCCCTGGGACAAGCACTCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS CAA 90 bp GTGAGGGCCTGGGCTCCCTCTGGGCTGATGGAGTTTTCTCGCAGGTaGAGACTGGAGAGTGTCTGGTTACTGCAGAGGGCTCGCATCAGC +
Preference number: 6 (lower is better)
Translates to: VRAWAPSGLMEFSRR*RLESVWLLQRARIS
Trigger: GCTGATGCGAGCCCTCTGCAGTAACCAGACACTCTCCAGTCTCAACCTGCGAGAAAACTCCATCAGCCCAGAGGGAGCCCAGGCCCTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS GCA 72 bp AGGACTGACCCTGGGGAACCTATGTTGTCTCCTTCCTaGCATGGTGGCTGCTCCAGGGTGCTAAAGGGCTCC +
Preference number: 6 (lower is better)
Translates to: RTDPGEPMLSPS*HGGCSRVLKGS
Trigger: GGAGCCCTTTAGCACCCTGGAGCAGCCACCATGGCAGGAAGGAGACAACATAGGTTCCCCAGGGTCAGTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177551.2
CDS GCA 72 bp GTGAGGGGCTGCCCAGTTCTGGGTCATTTCCCACCCTaGTCAGCAGAGCCTCAGAGTGCTTCGGTATCCTTG +
Preference number: 6 (lower is better)
Translates to: VRGCPVLGHFPP*SAEPQSASVSL
Trigger: CAAGGATACCGAAGCACTCTGAGGCTCTGCTGAGCAGGGTGGGAAATGACCCAGAACTGGGCAGCCCCTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CCA 72 bp CACACCAGCCACTCCAATGGTGAGAGAGACTCGAGGTaGGATGGATACCCGGGACAGAGGCAGGAAGAGCCT +
Preference number: 6 (lower is better)
Translates to: HTSHSNGERDSR*DGYPGQRQEEP
Trigger: AGGCTCTTCCTGCCTCTGTCCCGGGTATCCATCCCACCTCGAGTCTCTCTCACCATTGGAGTGGCTGGTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CAA 90 bp TCTGTTCAGCTGGAGTGCTTGTCCCAGGGCCCTGGCCGCACCAGCTaGGATGAAGTTCCACTGCAGGTGAAGGTGTGTGAGGGAGTGGTT +
Preference number: 6 (lower is better)
Translates to: SVQLECLSQGPGRTS*DEVPLQVKVCEGVV
Trigger: AACCACTCCCTCACACACCTTCACCTGCAGTGGAACTTCATCCAAGCTGGTGCGGCCAGGGCCCTGGGACAAGCACTCCAGCTGAACAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS CAA 90 bp TTGACCAGCCCATGGAAGGCCAGGCGGCCCAATGTCCCCACCATTTaGCGAGCTCCCTGGGTCACCTGCTTGATCCTAGGACTTACCTTT +
Preference number: 6 (lower is better)
Translates to: LTSPWKARRPNVPTI*RAPWVTCLILGLTF
Trigger: AAAGGTAAGTCCTAGGATCAAGCAGGTGACCCAGGGAGCTCGCAAAATGGTGGGGACATTGGGCCGCCTGGCCTTCCATGGGCTGGTCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS TCA 72 bp TCTATGTCTTGGACGGCCAGCCTGGTGCGATACAAGTaGCCCAGAGCCAGCCCCGTGAGCCTACAAAAGGCT +
Preference number: 6 (lower is better)
Translates to: SMSWTASLVRYK*PRASPVSLQKA
Trigger: AGCCTTTTGTAGGCTCACGGGGCTGGCTCTGGGTCACTTGTATCGCACCAGGCTGGCCGTCCAAGACATAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS TCA 72 bp CCATCACAGGGTCCTGGAACTGGTTGTTGTCCAGCCTaGGGCTTTGACAATAGAGCAGCTGGGGCAGCAGGC +
Preference number: 6 (lower is better)
Translates to: PSQGPGTGCCPA*GFDNRAAGAAG
Trigger: GCCTGCTGCCCCAGCTGCTCTATTGTCAAAGCCTCAGGCTGGACAACAACCAGTTCCAGGACCCTGTGATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CCA 72 bp AGCCAGCAGATCCACAAGGGCTTTCACCTGCTCAGCTaGGGAGCCAACACTGTAGGCCAGGCATGTCTCTCT +
Preference number: 6 (lower is better)
Translates to: SQQIHKGFHLLS*GANTVGQACLS
Trigger: AGAGAGACATGCCTGGCCTACAGTGTTGGCTCCCCAGCTGAGCAGGTGAAAGCCCTTGTGGATCTGCTGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CCA 72 bp GCAGAACCCGTGAGAAGCCCTTGCCCACCTGTCCTCTaGCCCAGCAATGAACAAAATGCCTCACTAGCGTGG +
Preference number: 6 (lower is better)
Translates to: AEPVRSPCPPVL*PSNEQNASLAW
Trigger: CCACGCTAGTGAGGCATTTTGTTCATTGCTGGGCCAGAGGACAGGTGGGCAAGGGCTTCTCACGGGTTCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CCA 72 bp GTGACCCAGAGCCAGCCCCGTGAGCCTACAAAAGGCTaGTACAGTGCACATCAGATACAGAGCCCTGTTGGC +
Preference number: 6 (lower is better)
Translates to: VTQSQPREPTKG*YSAHQIQSPVG
Trigger: GCCAACAGGGCTCTGTATCTGATGTGCACTGTACCAGCCTTTTGTAGGCTCACGGGGCTGGCTCTGGGTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CCA 72 bp GTACCAAGAGTAGAGCTCACACAGGGTCTGAGGCAATaGCAGCTCTATGTCTTGGACGGCCAGCCTGGTGCG +
Preference number: 6 (lower is better)
Translates to: VPRVELTQGLRQ*QLYVLDGQPGA
Trigger: CGCACCAGGCTGGCCGTCCAAGACATAGAGCTGCCATTGCCTCAGACCCTGTGTGAGCTCTACTCTTGGTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CCA 72 bp ACATCCAGCCTTCCATCCTTAGCTTGTGTGGCCCGCTaGGCTGCACACCTGAAATGGGCGAGGAAACCCAGT +
Preference number: 6 (lower is better)
Translates to: TSSLPSLACVAR*AAHLKWARKPS
Trigger: ACTGGGTTTCCTCGCCCATTTCAGGTGTGCAGCCCAGCGGGCCACACAAGCTAAGGATGGAAGGCTGGATGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CAA 90 bp AGCTGTCAGGTCCAAGTGCTTCAGAGTGTTGTTCCTGCAGAGAGCTaGAGTGAGGGCCTGGGCTCCCTCTGGGCTGATGGAGTTTTCTCG +
Preference number: 6 (lower is better)
Translates to: SCQVQVLQSVVPAES*SEGLGSLWADGVFS
Trigger: CGAGAAAACTCCATCAGCCCAGAGGGAGCCCAGGCCCTCACTCAAGCTCTCTGCAGGAACAACACTCTGAAGCACTTGGACCTGACAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS TCA 72 bp GCCTGGTGCGATACAAGTGACCCAGAGCCAGCCCCGTaGGCCTACAAAAGGCTGGTACAGTGCACATCAGAT +
Preference number: 6 (lower is better)
Translates to: AWCDTSDPEPAP*AYKRLVQCTSD
Trigger: ATCTGATGTGCACTGTACCAGCCTTTTGTAGGCTCACGGGGCTGGCTCTGGGTCACTTGTATCGCACCAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS TCA 72 bp ACATTGATGGCACGTGCACAGACTGCAGCGTCAGGATaGAGGAAGCCTTGTAGGACCTCAGCCACCTGGTCC +
Preference number: 6 (lower is better)
Translates to: TLMARAQTAASG*RKPCRTSATWS
Trigger: GGACCAGGTGGCTGAGGTCCTACAAGGCTTCCTTCATCCTGACGCTGCAGTCTGTGCACGTGCCATCAATGT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS TCA 72 bp CTGGCCGCACCAGCTTGGATGAAGTTCCACTGCAGGTaGAGGTGTGTGAGGGAGTGGTTTTCTCCCACAGCT +
Preference number: 6 (lower is better)
Translates to: LAAPAWMKFHCR*RCVREWFSPTA
Trigger: AGCTGTGGGAGAAAACCACTCCCTCACACACCTTCACCTGCAGTGGAACTTCATCCAAGCTGGTGCGGCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS TCA 72 bp GGCTACCAATGGAGGCCACCTGTAGGTAGAGAGCAATaGGGGTTGTGTTCACCTTCAGTGCGCCAGCCACTG +
Preference number: 6 (lower is better)
Translates to: GYQWRPPVGREQ*GLCSPSVRQPL
Trigger: CAGTGGCTGGCGCACTGAAGGTGAACACAACCCTCATTGCTCTCTACCTACAGGTGGCCTCCATTGGTAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS GCA 72 bp CCCGAAAGGTCAAGGGCAGAACCCGTGAGAAGCCCTTaGCCACCTGTCCTCTGGCCCAGCAATGAACAAAAT +
Preference number: 6 (lower is better)
Translates to: PERSRAEPVRSP*PPVLWPSNEQN
Trigger: ATTTTGTTCATTGCTGGGCCAGAGGACAGGTGGGCAAGGGCTTCTCACGGGTTCTGCCCTTGACCTTTCGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS GCA 72 bp TCTTTCGAATGCGACAGTCCTTCCCACTCAGCACGCTaGCCAGCAACTCCATCACAGGGTCCTGGAACTGGT +
Preference number: 6 (lower is better)
Translates to: SFECDSPSHSAR*PATPSQGPGTG
Trigger: ACCAGTTCCAGGACCCTGTGATGGAGTTGCTGGGCAGCGTGCTGAGTGGGAAGGACTGTCGCATTCGAAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CCA 72 bp CCCACAGCTACTGCAATGGCCTGGGCACCTCGGTCATaGAGGAGATTAGCTGTCAGGTCCAAGTGCTTCAGA +
Preference number: 6 (lower is better)
Translates to: PTATAMAWAPRS*RRLAVRSKCFR
Trigger: TCTGAAGCACTTGGACCTGACAGCTAATCTCCTCCATGACCGAGGTGCCCAGGCCATTGCAGTAGCTGTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS CCA 72 bp AGGGAGTGGTTTTCTCCCACAGCTACTGCAATGGCCTaGGCACCTCGGTCATGGAGGAGATTAGCTGTCAGG +
Preference number: 6 (lower is better)
Translates to: REWFSPTATAMA*APRSWRRLAVR
Trigger: CCTGACAGCTAATCTCCTCCATGACCGAGGTGCCCAGGCCATTGCAGTAGCTGTGGGAGAAAACCACTCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS CAA 72 bp CCCTGCTCAGCAGAGCCTCAGAGTGCTTCGGTATCCTaGACTCATTGCTCTGGGATCCTAGTGGGGAGTCTG +
Preference number: 6 (lower is better)
Translates to: PCSAEPQSASVS*THCSGILVGSL
Trigger: CAGACTCCCCACTAGGATCCCAGAGCAATGAGTCAAGGATACCGAAGCACTCTGAGGCTCTGCTGAGCAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CAA 72 bp TGGGCTCCCTCTGGGCTGATGGAGTTTTCTCGCAGGTaGAGACTGGAGAGTGTCTGGTTACTGCAGAGGGCT +
Preference number: 6 (lower is better)
Translates to: WAPSGLMEFSRR*RLESVWLLQRA
Trigger: AGCCCTCTGCAGTAACCAGACACTCTCCAGTCTCAACCTGCGAGAAAACTCCATCAGCCCAGAGGGAGCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS CAA 90 bp ACCCTGCTCAGCAGAGCCTCAGAGTGCTTCGGTATCCTTGACTCATaGCTCTGGGATCCTAGTGGGGAGTCTGGCATTTTGTCCCGGACT +
Preference number: 6 (lower is better)
Translates to: TLLSRASECFGILDS*LWDPSGESGILSRT
Trigger: AGTCCGGGACAAAATGCCAGACTCCCCACTAGGATCCCAGAGCAATGAGTCAAGGATACCGAAGCACTCTGAGGCTCTGCTGAGCAGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS TCA 72 bp GGAAACCCAGTCTGGGCCAGGACATGCCACTCTCGGTaGAGAGGTCAAAGATGGCCCTCTTGGATGCACTAT +
Preference number: 6 (lower is better)
Translates to: GNPVWARTCHSR*RGQRWPSWMHY
Trigger: ATAGTGCATCCAAGAGGGCCATCTTTGACCTCTTCACCGAGAGTGGCATGTCCTGGCCCAGACTGGGTTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS TCA 72 bp CTGCCCCAACGTCGTTTCCTCGTAAGTAGAGAGCAATaGGGGTTGTGTTCACCTTCAGTGCGCCAGCCACTG +
Preference number: 6 (lower is better)
Translates to: LPQRRFLVSREQ*GLCSPSVRQPL
Trigger: CAGTGGCTGGCGCACTGAAGGTGAACACAACCCTCATTGCTCTCTACTTACGAGGAAACGACGTTGGGGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229884.2
CDS GCA 72 bp GGGTCATTTCCCACCCTGCTCAGCAGAGCCTCAGAGTaGTTCGGTATCCTTGACTCATTGCTCTGGGATCCT +
Preference number: 6 (lower is better)
Translates to: GSFPTLLSRASE*FGILDSLLWDP
Trigger: AGGATCCCAGAGCAATGAGTCAAGGATACCGAAGCACTCTGAGGCTCTGCTGAGCAGGGTGGGAAATGACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS GCA 72 bp TCTTCCCGCTGCAGGAGACAGCTGCACAGAGTGTTCTaGAACAGAGCGAGGTCCACTCCAAATGCCTTCATG +
Preference number: 6 (lower is better)
Translates to: SSRCRRQLHRVF*NRARSTPNAFM
Trigger: CATGAAGGCATTTGGAGTGGACCTCGCTCTGTTGCAGAACACTCTGTGCAGCTGTCTCCTGCAGCGGGAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS GCA 72 bp AAGGTGTGTGAGGGAGTGGTTTTCTCCCACAGCTACTaGAATGGCCTGGGCACCTCGGTCATGGAGGAGATT +
Preference number: 6 (lower is better)
Translates to: KVCEGVVFSHSY*NGLGTSVMEEI
Trigger: AATCTCCTCCATGACCGAGGTGCCCAGGCCATTGCAGTAGCTGTGGGAGAAAACCACTCCCTCACACACCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS GCA 72 bp AGTTGGGTCATGTGGAGACCCGTGGTTCTCAGACAGTaGAGAGGCAACAAATATGGCCCCATCCATCCCCAG +
Preference number: 6 (lower is better)
Translates to: SWVMWRPVVLRQ*RGNKYGPIHPQ
Trigger: CTGGGGATGGATGGGGCCATATTTGTTGCCTCTGCACTGTCTGAGAACCACGGGTCTCCACATGACCCAACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229884.2
CDS CCA 72 bp GCCTCAGAGTGCTTCGGTATCCTTGACTCATTGCTCTaGGATCCTAGTGGGGAGTCTGGCATTTTGTCCCGG +
Preference number: 6 (lower is better)
Translates to: ASECFGILDSLL*DPSGESGILSR
Trigger: CCGGGACAAAATGCCAGACTCCCCACTAGGATCCCAGAGCAATGAGTCAAGGATACCGAAGCACTCTGAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CAA 72 bp GTAGGCCAGGCATGTCTCTCTGTCTGTCCACACCTCTaGCTTCCTCGTGGAGTCTGTGTTTGCAGCCAGAAG +
Preference number: 6 (lower is better)
Translates to: VGQACLSVCPHL*LPRGVCVCSQK
Trigger: CTTCTGGCTGCAAACACAGACTCCACGAGGAAGCAAGAGGTGTGGACAGACAGAGAGACATGCCTGGCCTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CAA 90 bp GCCACTGAGGAAGCTCCTTCATCCCCTATGGCATTCTCCTGTAAGTaGAGACTGGAGAGTGTCTGGTTACTGCAGAGGGCTCGCATCAGC +
Preference number: 6 (lower is better)
Translates to: ATEEAPSSPMAFSCK*RLESVWLLQRARIS
Trigger: GCTGATGCGAGCCCTCTGCAGTAACCAGACACTCTCCAGTCTCAACTTACAGGAGAATGCCATAGGGGATGAAGGAGCTTCCTCAGTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229884.2
CDS TCA 72 bp TGGGGCTGTGGCCACCAGACTAGCTTCCCCAATGCTTaGGAAGATGGATTGGATGAGTCTGTCTGCAGACAG +
Preference number: 6 (lower is better)
Translates to: WGCGHQTSFPNA*EDGLDESVCRQ
Trigger: CTGTCTGCAGACAGACTCATCCAATCCATCTTCTCAAGCATTGGGGAAGCTAGTCTGGTGGCCACAGCCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS TCA 72 bp CTGTGTGCCGCAGCTCACTTAGGCAGTACAAGACATTaGTGGCACGTGCACAGACTGCAGCGTCAGGATGAA +
Preference number: 6 (lower is better)
Translates to: LCAAAHLGSTRH*WHVHRLQRQDE
Trigger: TTCATCCTGACGCTGCAGTCTGTGCACGTGCCATCAATGTCTTGTACTGCCTAAGTGAGCTGCGGCACACAG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS TCA 72 bp AATGAGGGTTGTGTTCACCTTCAGTGCGCCAGCCACTaGGGAAGCTCCTTCATCCCCTATGGCATTCTCCTG +
Preference number: 6 (lower is better)
Translates to: NEGCVHLQCASH*GSSFIPYGILL
Trigger: CAGGAGAATGCCATAGGGGATGAAGGAGCTTCCTCAGTGGCTGGCGCACTGAAGGTGAACACAACCCTCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
ENSMUST00000229884.2
CDS TCA 72 bp CACAGTGCATGTGGGAGCGTTTGTCTTGATGGCCTCTaGGATCATCCTGGCAGCAGACTCCCCAATGGGATT +
Preference number: 6 (lower is better)
Translates to: HSACGSVCLDGL*DHPGSRLPNGI
Trigger: AATCCCATTGGGGAGTCTGCTGCCAGGATGATCTCAGAGGCCATCAAGACAAACGCTCCCACATGCACTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS CCA 72 bp GCCCAATTAAGTTCTTCTGTAGCTGTAGCATGGAGATaGTCTGGTTGGAGACCAGGGCCTCAGCCACGCACA +
Preference number: 6 (lower is better)
Translates to: AQLSSSVAVAWR*SGWRPGPQPRT
Trigger: TGTGCGTGGCTGAGGCCCTGGTCTCCAACCAGACCATCTCCATGCTACAGCTACAGAAGAACTTAATTGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
ENSMUST00000229884.2
CDS CCA 72 bp GGATCTGGTTCACCTTCAGGGCCTCAGCCAGGGCTATaGCACCTCTGTCGCCAATGGTATTACTGGAAAACA +
Preference number: 6 (lower is better)
Translates to: GSGSPSGPQPGL*HLCRQWYYWKT
Trigger: TGTTTTCCAGTAATACCATTGGCGACAGAGGTGCCATAGCCCTGGCTGAGGCCCTGAAGGTGAACCAGATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
ENSMUST00000229884.2
CDS CCA 72 bp GTGCGCCAGCCACTGAGGAAGCTCCTTCATCCCCTATaGCATTCTCCTGTAAGTCTAAGGTTGTCAGGGTTC +
Preference number: 6 (lower is better)
Translates to: VRQPLRKLLHPL*HSPVSLRLSGF
Trigger: GAACCCTGACAACCTTAGACTTACAGGAGAATGCCATAGGGGATGAAGGAGCTTCCTCAGTGGCTGGCGCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS CCA 72 bp GCAGACTCCCCAATGGGATTCCCCTGGAGATTAATATaGTGCAGACCGTGGTTCTCAGACAGTGCAGAGGCA +
Preference number: 6 (lower is better)
Translates to: ADSPMGFPWRLI*CRPWFSDSAEA
Trigger: TGCCTCTGCACTGTCTGAGAACCACGGTCTGCACCATATTAATCTCCAGGGGAATCCCATTGGGGAGTCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS CAA 72 bp ACCAGGGCCTCAGCCACGCACATGACACCGTCATCCTaGATCACGTTGCTTTGGAGGCTTAGAGAAGTTAGC +
Preference number: 6 (lower is better)
Translates to: TRASATHMTPSS*ITLLWRLREVS
Trigger: GCTAACTTCTCTAAGCCTCCAAAGCAACGTGATCAAGGATGACGGTGTCATGTGCGTGGCTGAGGCCCTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
ENSMUST00000229884.2
CDS CAA 90 bp CATTTCCCACCCTGCTCAGCAGAGCCTCAGAGTGCTTCGGTATCCTaGACTCATTGCTCTGGGATCCTAGTGGGGAGTCTGGCATTTTGT +
Preference number: 6 (lower is better)
Translates to: HFPPCSAEPQSASVS*THCSGILVGSLAFC
Trigger: ACAAAATGCCAGACTCCCCACTAGGATCCCAGAGCAATGAGTCAAGGATACCGAAGCACTCTGAGGCTCTGCTGAGCAGGGTGGGAAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CAA 90 bp TGGTTGGAGACCAGGGCCTCAGCCACGCACATGACACCGTCATCCTaGATCACGTTGCTTTGGAGGCTTAGAGAAGTTAGCGTTCGGTTT +
Preference number: 6 (lower is better)
Translates to: WLETRASATHMTPSS*ITLLWRLREVSVRF
Trigger: AAACCGAACGCTAACTTCTCTAAGCCTCCAAAGCAACGTGATCAAGGATGACGGTGTCATGTGCGTGGCTGAGGCCCTGGTCTCCAACCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
ENSMUST00000229884.2
CDS CAA 90 bp AGCCCAATTAAGTTCTTCTGTAGCTGTAGCATGGAGATGGTCTGGTaGGAGACCAGGGCCTCAGCCACGCACATGACACCGTCATCCTTG +
Preference number: 6 (lower is better)
Translates to: SPIKFFCSCSMEMVW*ETRASATHMTPSSL
Trigger: CAAGGATGACGGTGTCATGTGCGTGGCTGAGGCCCTGGTCTCCAACCAGACCATCTCCATGCTACAGCTACAGAAGAACTTAATTGGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
ENSMUST00000229884.2
CDS CAA 90 bp CAGAGGGCTCGCATCAGCACCGTCACTCCCATGTCACTGATGGAATaGCTCTGTAGGTCTAAGTTCTCCAGGATCTGGTTCACCTTCAGG +
Preference number: 6 (lower is better)
Translates to: QRARISTVTPMSLME*LCRSKFSRIWFTFR
Trigger: CCTGAAGGTGAACCAGATCCTGGAGAACTTAGACCTACAGAGCAATTCCATCAGTGACATGGGAGTGACGGTGCTGATGCGAGCCCTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
ENSMUST00000229884.2
CDS TCA 72 bp AGAGGGCTCGCATCAGCACCGTCACTCCCATGTCACTaGTGGAATTGCTCTGTAGGTCTAAGTTCTCCAGGA +
Preference number: 6 (lower is better)
Translates to: RGLASAPSLPCH*WNCSVGLSSPG
Trigger: TCCTGGAGAACTTAGACCTACAGAGCAATTCCATCAGTGACATGGGAGTGACGGTGCTGATGCGAGCCCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
ENSMUST00000229884.2
CDS GCA 72 bp GCAGAGCCTCAGAGTGCTTCGGTATCCTTGACTCATTaGTCTGGGATCCTAGTGGGGAGTCTGGCATTTTGT +
Preference number: 6 (lower is better)
Translates to: AEPQSASVSLTH*SGILVGSLAFC
Trigger: ACAAAATGCCAGACTCCCCACTAGGATCCCAGAGCAATGAGTCAAGGATACCGAAGCACTCTGAGGCTCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS GCA 72 bp GACTCCCCAATGGGATTCCCCTGGAGATTAATATGGTaGAGACCGTGGTTCTCAGACAGTGCAGAGGCAACA +
Preference number: 6 (lower is better)
Translates to: DSPMGFPWRLIW*RPWFSDSAEAT
Trigger: TGTTGCCTCTGCACTGTCTGAGAACCACGGTCTGCACCATATTAATCTCCAGGGGAATCCCATTGGGGAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS CCA 72 bp ATGGAATTGCTCTGTAGGTCTAAGTTCTCCAGGATCTaGTTCACCTTCAGGGCCTCAGCCAGGGCTATGGCA +
Preference number: 6 (lower is better)
Translates to: MELLCRSKFSRI*FTFRASARAMA
Trigger: TGCCATAGCCCTGGCTGAGGCCCTGAAGGTGAACCAGATCCTGGAGAACTTAGACCTACAGAGCAATTCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
ENSMUST00000229884.2
CDS CCA 72 bp ATCATCCTGGCAGCAGACTCCCCAATGGGATTCCCCTaGAGATTAATATGGTGCAGACCGTGGTTCTCAGAC +
Preference number: 6 (lower is better)
Translates to: IILAADSPMGFP*RLIWCRPWFSD
Trigger: GTCTGAGAACCACGGTCTGCACCATATTAATCTCCAGGGGAATCCCATTGGGGAGTCTGCTGCCAGGATGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS CAA 72 bp AGCAGAGCCTCAGAGTGCTTCGGTATCCTTGACTCATaGCTCTGGGATCCTAGTGGGGAGTCTGGCATTTTG +
Preference number: 6 (lower is better)
Translates to: SRASECFGILDS*LWDPSGESGIL
Trigger: CAAAATGCCAGACTCCCCACTAGGATCCCAGAGCAATGAGTCAAGGATACCGAAGCACTCTGAGGCTCTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CAA 90 bp TGGTCTACCTGGATCTCCTTCTTTGGGTCTGAGCAGGCCATGGTATaGGAGAATTCCAGGGGTGTCTTACACTCATCCAAGCCATCCAGG +
Preference number: 6 (lower is better)
Translates to: WSTWISFFGSEQAMV*ENSRGVLHSSKPSR
Trigger: CCTGGATGGCTTGGATGAGTGTAAGACACCCCTGGAATTCTCCAATACCATGGCCTGCTCAGACCCAAAGAAGGAGATCCAGGTAGACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CAA 90 bp CCTAAGAGGTTCTGCTCCTCAGGAAACATCTGCTCCAGACACACTTaGATCTCTTCCTCAGTAAGGCCCCGAATCTCAGTCATCCGGTCC +
Preference number: 6 (lower is better)
Translates to: PKRFCSSGNICSRHT*ISSSVRPRISVIRS
Trigger: GGACCGGATGACTGAGATTCGGGGCCTTACTGAGGAAGAGATCAAAGTGTGTCTGGAGCAGATGTTTCCTGAGGAGCAGAACCTCTTAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS TCA 72 bp GATCTGGCCAGGGCTTTGGCTCCTTTGTTACCAATCTaGTTCTCAGCCAGGCTGATCTTTCGAATGCGACAG +
Preference number: 6 (lower is better)
Translates to: DLARALAPLLPI*FSARLIFRMRQ
Trigger: CTGTCGCATTCGAAAGATCAGCCTGGCTGAGAATCAGATTGGTAACAAAGGAGCCAAAGCCCTGGCCAGATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS GCA 72 bp GAGATTAATATGGTGCAGACCGTGGTTCTCAGACAGTaGAGAGGCAACAAATATGGCCCCATCCATCCCCAG +
Preference number: 6 (lower is better)
Translates to: EINMVQTVVLRQ*RGNKYGPIHPQ
Trigger: CTGGGGATGGATGGGGCCATATTTGTTGCCTCTGCACTGTCTGAGAACCACGGTCTGCACCATATTAATCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS CCA 72 bp GGATCTCCTTCTTTGGGTCTGAGCAGGCCATGGTATTaGAGAATTCCAGGGGTGTCTTACACTCATCCAAGC +
Preference number: 6 (lower is better)
Translates to: GSPSLGLSRPWY*RIPGVSYTHPS
Trigger: GCTTGGATGAGTGTAAGACACCCCTGGAATTCTCCAATACCATGGCCTGCTCAGACCCAAAGAAGGAGATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CCA 72 bp TTGCCTCGGATGATGTTAGTGATCAGGTGGTCTACCTaGATCTCCTTCTTTGGGTCTGAGCAGGCCATGGTA +
Preference number: 6 (lower is better)
Translates to: LPRMMLVIRWST*ISFFGSEQAMV
Trigger: TACCATGGCCTGCTCAGACCCAAAGAAGGAGATCCAGGTAGACCACCTGATCACTAACATCATCCGAGGCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CCA 72 bp ATTAAGTTCTTCTGTAGCTGTAGCATGGAGATGGTCTaGTTGGAGACCAGGGCCTCAGCCACGCACATGACA +
Preference number: 6 (lower is better)
Translates to: IKFFCSCSMEMV*LETRASATHMT
Trigger: TGTCATGTGCGTGGCTGAGGCCCTGGTCTCCAACCAGACCATCTCCATGCTACAGCTACAGAAGAACTTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
ENSMUST00000229884.2
CDS CAA 72 bp CGCATCAGCACCGTCACTCCCATGTCACTGATGGAATaGCTCTGTAGGTCTAAGTTCTCCAGGATCTGGTTC +
Preference number: 6 (lower is better)
Translates to: RISTVTPMSLME*LCRSKFSRIWF
Trigger: GAACCAGATCCTGGAGAACTTAGACCTACAGAGCAATTCCATCAGTGACATGGGAGTGACGGTGCTGATGCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
ENSMUST00000229884.2
CDS CAA 72 bp GAAGCTCCTTCATCCCCTATGGCATTCTCCTGTAAGTaGAGACTGGAGAGTGTCTGGTTACTGCAGAGGGCT +
Preference number: 6 (lower is better)
Translates to: EAPSSPMAFSCK*RLESVWLLQRA
Trigger: AGCCCTCTGCAGTAACCAGACACTCTCCAGTCTCAACTTACAGGAGAATGCCATAGGGGATGAAGGAGCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229884.2
CDS CAA 90 bp GGTGCCAGCCATGTGAGTGTGCAGGGCAGGAACACTGTCATTATCTaGTCTTATGTTCTTTTGAGTTGGGTCATGTGGAGACCCGTGGTT +
Preference number: 6 (lower is better)
Translates to: GASHVSVQGRNTVII*SYVLLSWVMWRPVV
Trigger: AACCACGGGTCTCCACATGACCCAACTCAAAAGAACATAAGACAAGATAATGACAGTGTTCCTGCCCTGCACACTCACATGGCTGGCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229884.2
CDS TCA 72 bp TGGCTCCTTTGTTACCAATCTGATTCTCAGCCAGGCTaGTCTTTCGAATGCGACAGTCCTTCCCACTCAGCA +
Preference number: 6 (lower is better)
Translates to: WLLCYQSDSQPG*SFECDSPSHSA
Trigger: TGCTGAGTGGGAAGGACTGTCGCATTCGAAAGATCAGCCTGGCTGAGAATCAGATTGGTAACAAAGGAGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CCA 72 bp CTACCTGGATCTCCTTCTTTGGGTCTGAGCAGGCCATaGTATTGGAGAATTCCAGGGGTGTCTTACACTCAT +
Preference number: 6 (lower is better)
Translates to: LPGSPSLGLSRP*YWRIPGVSYTH
Trigger: ATGAGTGTAAGACACCCCTGGAATTCTCCAATACCATGGCCTGCTCAGACCCAAAGAAGGAGATCCAGGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CAA 72 bp TGGATCTCCTTCTTTGGGTCTGAGCAGGCCATGGTATaGGAGAATTCCAGGGGTGTCTTACACTCATCCAAG +
Preference number: 6 (lower is better)
Translates to: WISFFGSEQAMV*ENSRGVLHSSK
Trigger: CTTGGATGAGTGTAAGACACCCCTGGAATTCTCCAATACCATGGCCTGCTCAGACCCAAAGAAGGAGATCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CAA 72 bp TCAGCCACGCACATGACACCGTCATCCTTGATCACGTaGCTTTGGAGGCTTAGAGAAGTTAGCGTTCGGTTT +
Preference number: 6 (lower is better)
Translates to: SATHMTPSSLIT*LWRLREVSVRF
Trigger: AAACCGAACGCTAACTTCTCTAAGCCTCCAAAGCAACGTGATCAAGGATGACGGTGTCATGTGCGTGGCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
ENSMUST00000229884.2
CDS CAA 72 bp CTTCATCCCCTATGGCATTCTCCTGTAAGTCTAAGGTaGTCAGGGTTCTGTTCAGCTGGAGTGCTTGTCCCA +
Preference number: 6 (lower is better)
Translates to: LHPLWHSPVSLR*SGFCSAGVLVP
Trigger: TGGGACAAGCACTCCAGCTGAACAGAACCCTGACAACCTTAGACTTACAGGAGAATGCCATAGGGGATGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS CAA 90 bp AGTCTTCGGAGACTGGAGTTTAACTTTAAAGCATTTGCCAAGGCCTaGGCTCCAGCTGCCCCAACGTCGTTTCCTCGTAAGTCAAGAATC +
Preference number: 6 (lower is better)
Translates to: SLRRLEFNFKAFAKA*APAAPTSFPRKSRI
Trigger: GATTCTTGACTTACGAGGAAACGACGTTGGGGCAGCTGGAGCCAAGGCCTTGGCAAATGCTTTAAAGTTAAACTCCAGTCTCCGAAGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
CDS CAA 90 bp GCAGGGCAGGAACACTGTCATTATCTTGTCTTATGTTCTTTTGAGTaGGGTCATGTGGAGACCCGTGGTTCTCAGACAGTGCAGAGGCAA +
Preference number: 6 (lower is better)
Translates to: AGQEHCHYLVLCSFE*GHVETRGSQTVQRQ
Trigger: TTGCCTCTGCACTGTCTGAGAACCACGGGTCTCCACATGACCCAACTCAAAAGAACATAAGACAAGATAATGACAGTGTTCCTGCCCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229884.2
CDS CCA 72 bp ATGTCTCTCTGTCTGTCCACACCTCTTGCTTCCTCGTaGAGTCTGTGTTTGCAGCCAGAAGTTGTGAATACA +
Preference number: 6 (lower is better)
Translates to: MSLCLSTPLASS*SLCLQPEVVNT
Trigger: TGTATTCACAACTTCTGGCTGCAAACACAGACTCCACGAGGAAGCAAGAGGTGTGGACAGACAGAGAGACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CAA 90 bp GGCCCTCTTGGATGCACTATAGTAATATGTAGCTGCCACAAATTCTaGCAGAGACAGGTGAATGAAGCAGTAAGCTACAGAGGAGGCCAG +
Preference number: 6 (lower is better)
Translates to: GPLGCTIVICSCHKF*QRQVNEAVSYRGGQ
Trigger: CTGGCCTCCTCTGTAGCTTACTGCTTCATTCACCTGTCTCTGCAAGAATTTGTGGCAGCTACATATTACTATAGTGCATCCAAGAGGGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CAA 90 bp AGTGTGCAGGGCAGGAACACTGTCATTATCTTGTCTTATGTTCTTTaGAGTTGGGTCATGTGGAGACCCGTGGTTCTCAGACAGTGCAGA +
Preference number: 6 (lower is better)
Translates to: SVQGRNTVIILSYVL*SWVMWRPVVLRQCR
Trigger: TCTGCACTGTCTGAGAACCACGGGTCTCCACATGACCCAACTCAAAAGAACATAAGACAAGATAATGACAGTGTTCCTGCCCTGCACACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229884.2
CDS CCA 72 bp ACGCACATGACACCGTCATCCTTGATCACGTTGCTTTaGAGGCTTAGAGAAGTTAGCGTTCGGTTTATCTTC +
Preference number: 6 (lower is better)
Translates to: THMTPSSLITLL*RLREVSVRFIF
Trigger: GAAGATAAACCGAACGCTAACTTCTCTAAGCCTCCAAAGCAACGTGATCAAGGATGACGGTGTCATGTGCGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000177551.2
ENSMUST00000180200.8
ENSMUST00000229884.2
CDS TCA 72 bp GCAGGAACACTGTCATTATCTTGTCTTATGTTCTTTTaGGTTGGGTCATGTGGAGACCCGTGGTTCTCAGAC +
Preference number: 6 (lower is better)
Translates to: AGTLSLSCLMFF*VGSCGDPWFSD
Trigger: GTCTGAGAACCACGGGTCTCCACATGACCCAACTCAAAAGAACATAAGACAAGATAATGACAGTGTTCCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229884.2
CDS CCA 72 bp ATTATCTTGTCTTATGTTCTTTTGAGTTGGGTCATGTaGAGACCCGTGGTTCTCAGACAGTGCAGAGGCAAC +
Preference number: 6 (lower is better)
Translates to: IILSYVLLSWVM*RPVVLRQCRGN
Trigger: GTTGCCTCTGCACTGTCTGAGAACCACGGGTCTCCACATGACCCAACTCAAAAGAACATAAGACAAGATAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229884.2
CDS GCA 72 bp GATGGCCCTCTTGGATGCACTATAGTAATATGTAGCTaGCACAAATTCTTGCAGAGACAGGTGAATGAAGCA +
Preference number: 6 (lower is better)
Translates to: DGPLGCTIVICS*HKFLQRQVNEA
Trigger: TGCTTCATTCACCTGTCTCTGCAAGAATTTGTGGCAGCTACATATTACTATAGTGCATCCAAGAGGGCCATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS GCA 72 bp ACTCTCGGTGAAGAGGTCAAAGATGGCCCTCTTGGATaGACTATAGTAATATGTAGCTGCCACAAATTCTTG +
Preference number: 6 (lower is better)
Translates to: TLGEEVKDGPLG*TIVICSCHKFL
Trigger: CAAGAATTTGTGGCAGCTACATATTACTATAGTGCATCCAAGAGGGCCATCTTTGACCTCTTCACCGAGAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2
CDS CAA 72 bp GAACACTGTCATTATCTTGTCTTATGTTCTTTTGAGTaGGGTCATGTGGAGACCCGTGGTTCTCAGACAGTG +
Preference number: 6 (lower is better)
Translates to: EHCHYLVLCSFE*GHVETRGSQTV
Trigger: CACTGTCTGAGAACCACGGGTCTCCACATGACCCAACTCAAAAGAACATAAGACAAGATAATGACAGTGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000229884.2
CDS CAA 72 bp GGATGCACTATAGTAATATGTAGCTGCCACAAATTCTaGCAGAGACAGGTGAATGAAGCAGTAAGCTACAGA +
Preference number: 6 (lower is better)
Translates to: GCTIVICSCHKF*QRQVNEAVSYR
Trigger: TCTGTAGCTTACTGCTTCATTCACCTGTCTCTGCAAGAATTTGTGGCAGCTACATATTACTATAGTGCATCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177551.2
ENSMUST00000229884.2