RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NLGN3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031302

Ensembl transcript IDs: ENSMUST00000065858.3, ENSMUST00000118111.8, ENSMUST00000130555.8, ENSMUST00000151528.8

Found 493 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACAAGGCAGGAGGCCACAGGCTGCTGGAGCATTGAGCTTCCAGCCTaGGCAGGCCCCTGGCTCCAGAGGCTGTTGGGGCAGGCCTGTGCA +
Preference number: 1 (lower is better)
Translates to: TRQEATGCWSIELPA*AGPWLQRLLGQACA
Trigger: TGCACAGGCCTGCCCCAACAGCCTCTGGAGCCAGGGGCCTGCTCAGGCTGGAAGCTCAATGCTCCAGCAGCCTGTGGCCTCCTGCCTTGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR GCA 90 bp GGCCCCAGGAGTGTCTGTGGTCGGGCTCAAGGAGCTGGTTCCAGCTaGTGTTCCATGGGCCCTTGGTACCAAGGACTCGTATGTGTCCCC +
Preference number: 1 (lower is better)
Translates to: GPRSVCGRAQGAGSS*CSMGPWYQGLVCVP
Trigger: GGGGACACATACGAGTCCTTGGTACCAAGGGCCCATGGAACAGCAGCTGGAACCAGCTCCTTGAGCCCGACCACAGACACTCCTGGGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CCA 90 bp TGGCTTCCAGGGCCCCAGGAGTGTCTGTGGTCGGGCTCAAGGAGCTaGTTCCAGCTGCTGTTCCATGGGCCCTTGGTACCAAGGACTCGT +
Preference number: 1 (lower is better)
Translates to: WLPGPQECLWSGSRS*FQLLFHGPLVPRTR
Trigger: ACGAGTCCTTGGTACCAAGGGCCCATGGAACAGCAGCTGGAACCAGCTCCTTGAGCCCGACCACAGACACTCCTGGGGCCCTGGAAGCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR GCA 90 bp CCTGTAGGCTCTGTAGTCCTCTCTGGGAGGCCCAGAGCCAGTTGGTaGTCTGTCCTTGCTGGCCCTCAAGCCCCATCCATTGCTAGCCTC +
Preference number: 1 (lower is better)
Translates to: PVGSVVLSGRPRASW*SVLAGPQAPSIASL
Trigger: GAGGCTAGCAATGGATGGGGCTTGAGGGCCAGCAAGGACAGAGCACCAACTGGCTCTGGGCCTCCCAGAGAGGACTACAGAGCCTACAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CCA 90 bp CACCCTGTAGGCTCTGTAGTCCTCTCTGGGAGGCCCAGAGCCAGTTaGTGCTCTGTCCTTGCTGGCCCTCAAGCCCCATCCATTGCTAGC +
Preference number: 1 (lower is better)
Translates to: HPVGSVVLSGRPRAS*CSVLAGPQAPSIAS
Trigger: GCTAGCAATGGATGGGGCTTGAGGGCCAGCAAGGACAGAGCACCAACTGGCTCTGGGCCTCCCAGAGAGGACTACAGAGCCTACAGGGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CCA 90 bp GGCCTTTGCAGAAGCAGGTCACCCTGTAGGCTCTGTAGTCCTCTCTaGGAGGCCCAGAGCCAGTTGGTGCTCTGTCCTTGCTGGCCCTCA +
Preference number: 1 (lower is better)
Translates to: GLCRSRSPCRLCSPL*EAQSQLVLCPCWPS
Trigger: TGAGGGCCAGCAAGGACAGAGCACCAACTGGCTCTGGGCCTCCCAGAGAGGACTACAGAGCCTACAGGGTGACCTGCTTCTGCAAAGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR TCA 90 bp TCAGCAGGTCAGAGGTCAAGCCTCCTCCTAGCCACCAGTCCAAGATaGGGGCAAGATGATGACCACGATAGTGGTGGCATTGGAGGAGGT +
Preference number: 1 (lower is better)
Translates to: SAGQRSSLLLATSPR*GQDDDHDSGGIGGG
Trigger: ACCTCCTCCAATGCCACCACTATCGTGGTCATCATCTTGCCCTCATCTTGGACTGGTGGCTAGGAGGAGGCTTGACCTCTGACCTGCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR TCA 90 bp TGGTCTGATTGTATGAACATTGGGAGTCCCAGAGCCAGAGCGTCCTaGTCTTGGAGCCCTCCCTTCCAGAGCTGCTTAGCACTCAATGGG +
Preference number: 1 (lower is better)
Translates to: WSDCMNIGSPRARAS*SWSPPFQSCLALNG
Trigger: CCCATTGAGTGCTAAGCAGCTCTGGAAGGGAGGGCTCCAAGATCAGGACGCTCTGGCTCTGGGACTCCCAATGTTCATACAATCAGACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR TCA 90 bp CTTGTGCCCATCTGTCACTGTCTTGGAAGGTCCTTCTCCTTGGTCTaGTTGTATGAACATTGGGAGTCCCAGAGCCAGAGCGTCCTGATC +
Preference number: 1 (lower is better)
Translates to: LVPICHCLGRSFSLV*LYEHWESQSQSVLI
Trigger: GATCAGGACGCTCTGGCTCTGGGACTCCCAATGTTCATACAATCAGACCAAGGAGAAGGACCTTCCAAGACAGTGACAGATGGGCACAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR GCA 90 bp CAAGACCCAGAGAAAAGACCAAGTCTGGGGGAGGAAGAGCTATCCTaGTCTTTAAAGCTCCCGAGTCTGCAGTTGGTAGAGGTGCAGTTC +
Preference number: 1 (lower is better)
Translates to: QDPEKRPSLGEEELS*SLKLPSLQLVEVQF
Trigger: GAACTGCACCTCTACCAACTGCAGACTCGGGAGCTTTAAAGAGCAGGATAGCTCTTCCTCCCCCAGACTTGGTCTTTTCTCTGGGTCTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR GCA 90 bp CAGCAGTGGTGGTGGCTTGGTGGCAGAGGAAGGAAGTATTATTTTTaGTGTTTCATTAGGAGGCCCGAGGCGATGAGAGGTTTCTGCTGC +
Preference number: 1 (lower is better)
Translates to: QQWWWLGGRGRKYYF*CFIRRPEAMRGFCC
Trigger: GCAGCAGAAACCTCTCATCGCCTCGGGCCTCCTAATGAAACAGCAAAAATAATACTTCCTTCCTCTGCCACCAAGCCACCACCACTGCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CCA 90 bp ATAGTCTTGTGCCCATCTGTCACTGTCTTGGAAGGTCCTTCTCCTTaGTCTGATTGTATGAACATTGGGAGTCCCAGAGCCAGAGCGTCC +
Preference number: 1 (lower is better)
Translates to: IVLCPSVTVLEGPSP*SDCMNIGSPRARAS
Trigger: GGACGCTCTGGCTCTGGGACTCCCAATGTTCATACAATCAGACCAAGGAGAAGGACCTTCCAAGACAGTGACAGATGGGCACAAGACTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CCA 90 bp ATCTGCACATGGGGGTGCACATCCGTGGTCCTAGTACTCAGGAGATaGAAGCAGGAGGGTCAGAATTTGGAGTCATATTCTGCTACACAG +
Preference number: 1 (lower is better)
Translates to: ICTWGCTSVVLVLRR*KQEGQNLESYSATQ
Trigger: CTGTGTAGCAGAATATGACTCCAAATTCTGACCCTCCTGCTTCCATCTCCTGAGTACTAGGACCACGGATGTGCACCCCCATGTGCAGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CCA 90 bp CTTTATAAAGAAGAAAGGAAGAGCAGGGCTGCAGACGGAGCTCGGTaGGAATGGAGCTCATCTAGCGCACATAAGGCTTTCGGGTCCATT +
Preference number: 1 (lower is better)
Translates to: LYKEERKSRAADGAR*EWSSSSAHKAFGSI
Trigger: AATGGACCCGAAAGCCTTATGTGCGCTAGATGAGCTCCATTCCCACCGAGCTCCGTCTGCAGCCCTGCTCTTCCTTTCTTCTTTATAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR GCA 90 bp GTGTTTTTGTACATGCGGGTGCATGTCCACATCTGTCTGTGTTTATaGAGATGGGTCTGCTGTAGGGTGTGGGTGCGTGCGTGTACATAT +
Preference number: 1 (lower is better)
Translates to: VFLYMRVHVHICLCL*RWVCCRVWVRACTY
Trigger: ATATGTACACGCACGCACCCACACCCTACAGCAGACCCATCTGCATAAACACAGACAGATGTGGACATGCACCCGCATGTACAAAAACAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CCA 90 bp GTCCACATCTGTCTGTGTTTATGCAGATGGGTCTGCTGTAGGGTGTaGGTGCGTGCGTGTACATATATGTGTATGTGTGTGCATGTGTGT +
Preference number: 1 (lower is better)
Translates to: VHICLCLCRWVCCRV*VRACTYMCMCVHVC
Trigger: ACACACATGCACACACATACACATATATGTACACGCACGCACCCACACCCTACAGCAGACCCATCTGCATAAACACAGACAGATGTGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR TCA 90 bp TGTTCCATGGGCCCTTGGTACCAAGGACTCGTATGTGTCCCCATTTaGAGGGCCTATTCAGGTTCACGTCTGGATTTGTGTTTTTGTACA +
Preference number: 1 (lower is better)
Translates to: CSMGPWYQGLVCVPI*RAYSGSRLDLCFCT
Trigger: TGTACAAAAACACAAATCCAGACGTGAACCTGAATAGGCCCTTCAAATGGGGACACATACGAGTCCTTGGTACCAAGGGCCCATGGAACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR TCA 90 bp CCCAGAGTTGTTAGGGAGCCACTAGTGACAGTCCCCCAGAGAAATTaGTCTCCAATTCACAGAAAAGGAAACCTACATCCCTTGAGGGAA +
Preference number: 1 (lower is better)
Translates to: PRVVREPLVTVPQRN*SPIHRKGNLHPLRE
Trigger: TTCCCTCAAGGGATGTAGGTTTCCTTTTCTGTGAATTGGAGATCAATTTCTCTGGGGGACTGTCACTAGTGGCTCCCTAACAACTCTGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR TCA 90 bp ACAACTATCCATAACTCCAGTTCCAGGGGCTCCAGCTCCTTTTTCTaGCCTCCATGGGCATCAGACACTCTCATGGTACACACATACATA +
Preference number: 1 (lower is better)
Translates to: TTIHNSSSRGSSSFF*PPWASDTLMVHTYI
Trigger: TATGTATGTGTGTACCATGAGAGTGTCTGATGCCCATGGAGGTCAGAAAAAGGAGCTGGAGCCCCTGGAACTGGAGTTATGGATAGTTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR TCA 90 bp AGTCTAGAGCCTCTAACTGAGCAGAGGATCCCACGTGTTGTCCAATaGGTGCAAGACAGCACACACAGGATGTTTCTCTCCTTTATTTTG +
Preference number: 1 (lower is better)
Translates to: SLEPLTEQRIPRVVQ*VQDSTHRMFLSFIL
Trigger: CAAAATAAAGGAGAGAAACATCCTGTGTGTGCTGTCTTGCACTCATTGGACAACACGTGGGATCCTCTGCTCAGTTAGAGGCTCTAGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR GCA 90 bp GCCTATTCAGGTTCACGTCTGGATTTGTGTTTTTGTACATGCGGGTaGATGTCCACATCTGTCTGTGTTTATGCAGATGGGTCTGCTGTA +
Preference number: 1 (lower is better)
Translates to: AYSGSRLDLCFCTCG*MSTSVCVYADGSAV
Trigger: TACAGCAGACCCATCTGCATAAACACAGACAGATGTGGACATGCACCCGCATGTACAAAAACACAAATCCAGACGTGAACCTGAATAGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CCA 90 bp TCATCTCCTTCATTTTGTCAGGGTCACTTTGAAGAATTCTATTCCTaGCTTCCGAGTATCAGCAACCCTGCCCAACTGTCACACTTGATG +
Preference number: 1 (lower is better)
Translates to: SSPSFCQGHFEEFYS*LPSISNPAQLSHLM
Trigger: CATCAAGTGTGACAGTTGGGCAGGGTTGCTGATACTCGGAAGCCAGGAATAGAATTCTTCAAAGTGACCCTGACAAAATGAAGGAGATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR TCA 90 bp ACCCCCACTACCACCAATGGCTCCACATTTATTAATTTGGAACTGTaGGATTCGCCTTTTCTCATCCAAACAGGTAGTCCTGAGACTGAA +
Preference number: 1 (lower is better)
Translates to: TPTTTNGSTFINLEL*DSPFLIQTGSPETE
Trigger: TTCAGTCTCAGGACTACCTGTTTGGATGAGAAAAGGCGAATCTCACAGTTCCAAATTAATAAATGTGGAGCCATTGGTGGTAGTGGGGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CCA 90 bp AAGTCTGTTTTCCTACAACCTCCACCCATCAGATCTTGGAGCATTTaGAATCAGTCATACATAACAAAACAACAGCTTCAAACCAGCCCT +
Preference number: 1 (lower is better)
Translates to: KSVFLQPPPIRSWSI*NQSYITKQQLQTSP
Trigger: AGGGCTGGTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTGATGGGTGGAGGTTGTAGGAAAACAGACTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CCA 90 bp GCTGAATCCAAGTCTGTTTTCCTACAACCTCCACCCATCAGATCTTaGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAA +
Preference number: 1 (lower is better)
Translates to: AESKSVFLQPPPIRS*SIWNQSYITKQQLQ
Trigger: TTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTGATGGGTGGAGGTTGTAGGAAAACAGACTTGGATTCAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CCA 90 bp CTTAAGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTaGACTCCAATCTGTCGAATGACTAAAGCAGAATCTTTTTGCATT +
Preference number: 1 (lower is better)
Translates to: LKNNTSHTLHLAVTF*TPICRMTKAESFCI
Trigger: AATGCAAAAAGATTCTGCTTTAGTCATTCGACAGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCTTAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp AGTCCTCTCTGGGAGGCCCAGAGCCAGTTGGTGCTCTGTCCTTGCTGGCCCTCATCGGGCTCAAGGAGCTaGTTCCAGCTGCTGTTCCAT +
Preference number: 2 (lower is better)
Translates to: SPLWEAQSQLVLCPCWPSSGSRS*FQLLFH
Trigger: ATGGAACAGCAGCTGGAACCAGCTCCTTGAGCCCGA...TGAGGGCCAGCAAGGACAGAGCACCAACTGGCTCTGGGCCTCCCAGAGAGGACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp CAGAGCGTCCTGATCTTGGAGCCCTCCCTTCCAGAGCTGCTTAGCACTCAATGGCCCCAGGAGTGTCTGTaGTCGGGCTCAAGGAGCTGG +
Preference number: 2 (lower is better)
Translates to: QSVLILEPSLPELLSTQWPQECL*SGSRSW
Trigger: CCAGCTCCTTGAGCCCGACCACAGACACTCCTGGGG...CCATTGAGTGCTAAGCAGCTCTGGAAGGGAGGGCTCCAAGATCAGGACGCTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp GCTCCAGAGGCTGTTGGGGCAGGCCTGTGCAACGGAGGCAGGTTGGGAGTGCTATGTTCCATGGGCCCTTaGTACCAAGGACTCGTATGT +
Preference number: 2 (lower is better)
Translates to: APEAVGAGLCNGGRLGVLCSMGP*YQGLVC
Trigger: ACATACGAGTCCTTGGTACCAAGGGCCCATGGAACA...TAGCACTCCCAACCTGCCTCCGTTGCACAGGCCTGCCCCAACAGCCTCTGGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp GCTCCAGAGGCTGTTGGGGCAGGCCTGTGCAACGGAGGCAGGTTGGGAGTGCTAAGAAAAGACCAAGTCTaGGGGAGGAAGAGCTATCCT +
Preference number: 2 (lower is better)
Translates to: APEAVGAGLCNGGRLGVLRKDQV*GRKSYP
Trigger: AGGATAGCTCTTCCTCCCCCAGACTTGGTCTTTTCT...TAGCACTCCCAACCTGCCTCCGTTGCACAGGCCTGCCCCAACAGCCTCTGGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CAA 90 bp GGGGAGGAAGAGCTATCCTGCTCTTTAAAGCTCCCGAGTCTGCAGTaGGTAGAGGTGCAGTTCCGAGAAGGCAAGCACCAAGGGGGTGTC +
Preference number: 2 (lower is better)
Translates to: GEEELSCSLKLPSLQ*VEVQFREGKHQGGV
Trigger: GACACCCCCTTGGTGCTTGCCTTCTCGGAACTGCACCTCTACCAACTGCAGACTCGGGAGCTTTAAAGAGCAGGATAGCTCTTCCTCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp AGTCCTCTCTGGGAGGCCCAGAGCCAGTTGGTGCTCTGTCCTTGCTGGCCCTCAGAGGAAGAGCTATCCTaGTCTTTAAAGCTCCCGAGT +
Preference number: 2 (lower is better)
Translates to: SPLWEAQSQLVLCPCWPSEEELS*SLKLPS
Trigger: ACTCGGGAGCTTTAAAGAGCAGGATAGCTCTTCCTC...TGAGGGCCAGCAAGGACAGAGCACCAACTGGCTCTGGGCCTCCCAGAGAGGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp AGTCCTCTCTGGGAGGCCCAGAGCCAGTTGGTGCTCTGTCCTTGCTGGCCCTCATACCCCATAGTCTTGTaGCCATCTGTCACTGTCTTG +
Preference number: 2 (lower is better)
Translates to: SPLWEAQSQLVLCPCWPSYPIVL*PSVTVL
Trigger: CAAGACAGTGACAGATGGGCACAAGACTATGGGGTA...TGAGGGCCAGCAAGGACAGAGCACCAACTGGCTCTGGGCCTCCCAGAGAGGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp AGTCCTCTCTGGGAGGCCCAGAGCCAGTTGGTGCTCTGTCCTTGCTGGCCCTCACATCTGTCACTGTCTTaGAAGGTCCTTCTCCTTGGT +
Preference number: 2 (lower is better)
Translates to: SPLWEAQSQLVLCPCWPSHLSLS*KVLLLG
Trigger: ACCAAGGAGAAGGACCTTCCAAGACAGTGACAGATG...TGAGGGCCAGCAAGGACAGAGCACCAACTGGCTCTGGGCCTCCCAGAGAGGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp AGTCCTCTCTGGGAGGCCCAGAGCCAGTTGGTGCTCTGTCCTTGCTGGCCCTCAATCTGTCTGTGTTTATaGAGATGGGTCTGCTGTAGG +
Preference number: 2 (lower is better)
Translates to: SPLWEAQSQLVLCPCWPSICLCL*RWVCCR
Trigger: CCTACAGCAGACCCATCTGCATAAACACAGACAGAT...TGAGGGCCAGCAAGGACAGAGCACCAACTGGCTCTGGGCCTCCCAGAGAGGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp GGCCCTCAAGCCCCATCCATTGCTAGCCTCTTCCTCCTCTTACCCCATAGTCTTTTATGCAGATGGGTCTaGTGTAGGGTGTGGGTGCGT +
Preference number: 2 (lower is better)
Translates to: GPQAPSIASLFLLLPHSLLCRWV*CRVWVR
Trigger: ACGCACCCACACCCTACAGCAGACCCATCTGCATAA...AAGACTATGGGGTAAGAGGAGGAAGAGGCTAGCAATGGATGGGGCTTGAGGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp CAGTCATACATAACAAAACAACAGCTTCAAACCAGCCCTCGGGAAGCAGAGGCCGAGGGAGCTGGGAGATaGGCTGTGCTCCGGGATAGA +
Preference number: 2 (lower is better)
Translates to: QSYITKQQLQTSPREAEAEGAGR*AVLRDR
Trigger: TCTATCCCGGAGCACAGCCCATCTCCCAGCTCCCTC...GGCCTCTGCTTCCCGAGGGCTGGTTTGAAGCTGTTGTTTTGTTATGTATGACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCAGGCCCAGAGCCAGTTaGTGCTCTGTCCTTGCTGGC +
Preference number: 2 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPRPRAS*CSVLAG
Trigger: GCCAGCAAGGACAGAGCACCAACTGGCTCTGGGCCT...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCGCAGGCTGCTGCTGCTaGCCTTTGCAGAAGCAGGTC +
Preference number: 2 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPAGCCC*PLQKQV
Trigger: GACCTGCTTCTGCAAAGGCCAGCAGCAGCAGCCTGC...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp CAGTCATACATAACAAAACAACAGCTTCAAACCAGCCCTCGGGAAGCAGAGGCCTGGTGGCAGCAGTGGTaGTGGCTTGGTGGCAGAGGA +
Preference number: 2 (lower is better)
Translates to: QSYITKQQLQTSPREAEAWWQQW*WLGGRG
Trigger: TCCTCTGCCACCAAGCCACCACCACTGCTGCCACCA...GGCCTCTGCTTCCCGAGGGCTGGTTTGAAGCTGTTGTTTTGTTATGTATGACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp CAGAGCGTCCTGATCTTGGAGCCCTCCCTTCCAGAGCTGCTTAGCACTCAATGGAGAAAAGACCAAGTCTaGGGGAGGAAGAGCTATCCT +
Preference number: 2 (lower is better)
Translates to: QSVLILEPSLPELLSTQWRKDQV*GRKSYP
Trigger: AGGATAGCTCTTCCTCCCCCAGACTTGGTCTTTTCT...CCATTGAGTGCTAAGCAGCTCTGGAAGGGAGGGCTCCAAGATCAGGACGCTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCCTCTGTAGTCCTCTCTaGGAGGCCCAGAGCCAGTTG +
Preference number: 2 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPLCSPL*EAQSQL
Trigger: CAACTGGCTCTGGGCCTCCCAGAGAGGACTACAGAG...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCGGCTCCAGAGGCTGTTaGGGCAGGCCTGTGCAACGG +
Preference number: 2 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFGSRGC*GRPVQR
Trigger: CCGTTGCACAGGCCTGCCCCAACAGCCTCTGGAGCC...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CAA 90 bp CATCCAGGCCCTCAGAGGGTGAAGGACACAGCACAGTCATTTCATTaGGCAGCTACTGGTGGGAGTTTTCAGGGTAGTCAAAGCATCTCC +
Preference number: 2 (lower is better)
Translates to: HPGPQRVKDTAQSFH*AATGGSFQGSQSIS
Trigger: GGAGATGCTTTGACTACCCTGAAAACTCCCACCAGTAGCTGCCAAATGAAATGACTGTGCTGTGTCCTTCACCCTCTGAGGGCCTGGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp TCTCCATCAAAGAGGGTGAGGTGGCTCTGTACAGTGACGACGAATCTTTATTTCCCCAGAGCCAGTTGGTaGTCTGTCCTTGCTGGCCCT +
Preference number: 2 (lower is better)
Translates to: SPSKRVRWLCTVTTNLYFPRASW*SVLAGP
Trigger: AGGGCCAGCAAGGACAGAGCACCAACTGGCTCTGGG...GAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp TTGTACATCATCCTGCCTTGTGATGGCTCATCTCCTTCATTTTGTCAGGGTCACCAGGCAGGCTGCTGCTaGTGGCCTTTGCAGAAGCAG +
Preference number: 2 (lower is better)
Translates to: LYIILPCDGSSPSFCQGHQAGCC*WPLQKQ
Trigger: CTGCTTCTGCAAAGGCCAGCAGCAGCAGCCTGCCTG...GTGACCCTGACAAAATGAAGGAGATGAGCCATCACAAGGCAGGATGATGTACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp TTGTACATCATCCTGCCTTGTGATGGCTCATCTCCTTCATTTTGTCAGGGTCACCTTCTCCAGGCAGGCTaGTGCTGCTGGCCTTTGCAG +
Preference number: 2 (lower is better)
Translates to: LYIILPCDGSSPSFCQGHLLQAG*CCWPLQ
Trigger: CTGCAAAGGCCAGCAGCAGCAGCCTGCCTGGAGAAG...GTGACCCTGACAAAATGAAGGAGATGAGCCATCACAAGGCAGGATGATGTACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCATGAGAGAGGCTTTGTaGAGGGGGCCCAGGACAAGT +
Preference number: 2 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPMREAL*RGPRTS
Trigger: ACTTGTCCTGGGCCCCCTGCACAAAGCCTCTCTCAT...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp TTGTACATCATCCTGCCTTGTGATGGCTCATCTCCTTCATTTTGTCAGGGTCACGAGGGAGCTGGGAGATaGGCTGTGCTCCGGGATAGA +
Preference number: 2 (lower is better)
Translates to: LYIILPCDGSSPSFCQGHEGAGR*AVLRDR
Trigger: TCTATCCCGGAGCACAGCCCATCTCCCAGCTCCCTC...GTGACCCTGACAAAATGAAGGAGATGAGCCATCACAAGGCAGGATGATGTACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGCCCCAGGAGTGTCTGTaGTCGGGCTCAAGGAGCTGG +
Preference number: 2 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGPQECL*SGSRSW
Trigger: CCAGCTCCTTGAGCCCGACCACAGACACTCCTGGGG...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR TCA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCTTTGAGGCCCCACCTTaGATCCATTCCCCAGAGTTG +
Preference number: 2 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPFEAPP*IHSPEL
Trigger: CAACTCTGGGGAATGGATTCAAGGTGGGGCCTCAAA...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCTTATGCAGATGGGTCTaGTGTAGGGTGTGGGTGCGT +
Preference number: 2 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPLCRWV*CRVWVR
Trigger: ACGCACCCACACCCTACAGCAGACCCATCTGCATAA...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp CAGTCATACATAACAAAACAACAGCTTCAAACCAGCCCTCGGGAAGCAGAGGCCCCTCCCTTCCAGAGCTaGTTAGCACTCAATGGGTTG +
Preference number: 2 (lower is better)
Translates to: QSYITKQQLQTSPREAEAPPFQS*LALNGL
Trigger: CAACCCATTGAGTGCTAAGCAGCTCTGGAAGGGAGG...GGCCTCTGCTTCCCGAGGGCTGGTTTGAAGCTGTTGTTTTGTTATGTATGACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp TTGTACATCATCCTGCCTTGTGATGGCTCATCTCCTTCATTTTGTCAGGGTCACGCTGCTGCTGGCCTTTaGAGAAGCAGGTCACCCTGT +
Preference number: 2 (lower is better)
Translates to: LYIILPCDGSSPSFCQGHAAAGL*RSRSPC
Trigger: ACAGGGTGACCTGCTTCTGCAAAGGCCAGCAGCAGC...GTGACCCTGACAAAATGAAGGAGATGAGCCATCACAAGGCAGGATGATGTACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGCAGGCAGGCTGCTGCTaGTGGCCTTTGCAGAAGCAG +
Preference number: 2 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGQAGCC*WPLQKQ
Trigger: CTGCTTCTGCAAAGGCCAGCAGCAGCAGCCTGCCTG...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCCTTCTCCAGGCAGGCTaGTGCTGCTGGCCTTTGCAG +
Preference number: 2 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFLLQAG*CCWPLQ
Trigger: CTGCAAAGGCCAGCAGCAGCAGCCTGCCTGGAGAAG...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCGAGGGAGCTGGGAGATaGGCTGTGCTCCGGGATAGA +
Preference number: 2 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFEGAGR*AVLRDR
Trigger: TCTATCCCGGAGCACAGCCCATCTCCCAGCTCCCTC...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp TCTCCATCAAAGAGGGTGAGGTGGCTCTGTACAGTGACGACGAATCTTTATTTCCCAGCTGCTGTTCCATaGGCCCTTGGTACCAAGGAC +
Preference number: 2 (lower is better)
Translates to: SPSKRVRWLCTVTTNLYFPAAVP*ALGTKD
Trigger: GTCCTTGGTACCAAGGGCCCATGGAACAGCAGCTGG...GAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp TTGTACATCATCCTGCCTTGTGATGGCTCATCTCCTTCATTTTGTCAGGGTCACCTCTGTAGTCCTCTCTaGGAGGCCCAGAGCCAGTTG +
Preference number: 2 (lower is better)
Translates to: LYIILPCDGSSPSFCQGHLCSPL*EAQSQL
Trigger: CAACTGGCTCTGGGCCTCCCAGAGAGGACTACAGAG...GTGACCCTGACAAAATGAAGGAGATGAGCCATCACAAGGCAGGATGATGTACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCTGGTGGCAGCAGTGGTaGTGGCTTGGTGGCAGAGGA +
Preference number: 2 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFWWQQW*WLGGRG
Trigger: TCCTCTGCCACCAAGCCACCACCACTGCTGCCACCA...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGCAGCTCCAGGGCACCTaGATACATATGGCGCACGCG +
Preference number: 2 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGQLQGT*IHMAHA
Trigger: CGCGTGCGCCATATGTATCCAGGTGCCCTGGAGCTG...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp CAGTCATACATAACAAAACAACAGCTTCAAACCAGCCCTCGGGAAGCAGAGGCCTCAAAGAGGGTGAGGTaGCTCTGTACAGTGACGACG +
Preference number: 2 (lower is better)
Translates to: QSYITKQQLQTSPREAEASKRVR*LCTVTT
Trigger: CGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGA...GGCCTCTGCTTCCCGAGGGCTGGTTTGAAGCTGTTGTTTTGTTATGTATGACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CAA 90 bp GATAGTGGTGGCATTGGAGGAGGTGGTGGCAGCAGTGGTGGTGGCTaGGTGGCAGAGGAAGGAAGTATTATTTTTGCTGTTTCATTAGGA +
Preference number: 2 (lower is better)
Translates to: DSGGIGGGGGSSGGG*VAEEGSIIFAVSLG
Trigger: TCCTAATGAAACAGCAAAAATAATACTTCCTTCCTCTGCCACCAAGCCACCACCACTGCTGCCACCACCTCCTCCAATGCCACCACTATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR TCA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCACAATGCTAACCCTTTaGGGCCCCACCTTGAATCCA +
Preference number: 2 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPTMLTL*GPTLNP
Trigger: TGGATTCAAGGTGGGGCCTCAAAGGGTTAGCATTGT...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR TCA 90 bp CAGTCATACATAACAAAACAACAGCTTCAAACCAGCCCTCGGGAAGCAGAGGCCGCAGCACACAGACCATaGAAGAACACAGCTTGGTCT +
Preference number: 2 (lower is better)
Translates to: QSYITKQQLQTSPREAEAAAHRP*KNTAWS
Trigger: AGACCAAGCTGTGTTCTTTCATGGTCTGTGTGCTGC...GGCCTCTGCTTCCCGAGGGCTGGTTTGAAGCTGTTGTTTTGTTATGTATGACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCTTGGTGCTCTGTCCTTaGTGGCCCTCAAGCCCCATC +
Preference number: 2 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFLVLCP*WPSSPI
Trigger: GATGGGGCTTGAGGGCCAGCAAGGACAGAGCACCAA...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp TTGTACATCATCCTGCCTTGTGATGGCTCATCTCCTTCATTTTGTCAGGGTCACATGAGAGAGGCTTTGTaGAGGGGGCCCAGGACAAGT +
Preference number: 2 (lower is better)
Translates to: LYIILPCDGSSPSFCQGHMREAL*RGPRTS
Trigger: ACTTGTCCTGGGCCCCCTGCACAAAGCCTCTCTCAT...GTGACCCTGACAAAATGAAGGAGATGAGCCATCACAAGGCAGGATGATGTACAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCCTGTGTTTATGCAGATaGGTCTGCTGTAGGGTGTGG +
Preference number: 2 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPLCLCR*VCCRVW
Trigger: CCACACCCTACAGCAGACCCATCTGCATAAACACAG...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGCCAGCTGCTGTTCCATaGGCCCTTGGTACCAAGGAC +
Preference number: 2 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGPAAVP*ALGTKD
Trigger: GTCCTTGGTACCAAGGGCCCATGGAACAGCAGCTGG...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCCCAGCTGCTGTTCCATaGGCCCTTGGTACCAAGGAC +
Preference number: 2 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFPAAVP*ALGTKD
Trigger: GTCCTTGGTACCAAGGGCCCATGGAACAGCAGCTGG...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCCTCTGTAGTCCTCTCTaGGAGGCCCAGAGCCAGTTG +
Preference number: 2 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFLCSPL*EAQSQL
Trigger: CAACTGGCTCTGGGCCTCCCAGAGAGGACTACAGAG...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CAA 90 bp CTGTTCCATGGGCCCTTGGTACCAAGGACTCGTATGTGTCCCCATTaGAAGGGCCTATTCAGGTTCACGTCTGGATTTGTGTTTTTGTAC +
Preference number: 2 (lower is better)
Translates to: LFHGPLVPRTRMCPH*KGLFRFTSGFVFLY
Trigger: GTACAAAAACACAAATCCAGACGTGAACCTGAATAGGCCCTTCAAATGGGGACACATACGAGTCCTTGGTACCAAGGGCCCATGGAACAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CAA 90 bp CATCTCCTGACCACGCCTATGTCACTCCTTGGCTTTCTCCTAGTCTaGTTTCCATTTTGTCATCCTCAGAAGGATTGCAGCACACAGACC +
Preference number: 2 (lower is better)
Translates to: HLLTTPMSLLGFLLV*FPFCHPQKDCSTQT
Trigger: GGTCTGTGTGCTGCAATCCTTCTGAGGATGACAAAATGGAAACAAGACTAGGAGAAAGCCAAGGAGTGACATAGGCGTGGTCAGGAGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCTACCCCATAGTCTTGTaGCCATCTGTCACTGTCTTG +
Preference number: 2 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPYPIVL*PSVTVL
Trigger: CAAGACAGTGACAGATGGGCACAAGACTATGGGGTA...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTCCCAGAGCCAGTTGGTaGTCTGTCCTTGCTGGCCCT +
Preference number: 2 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSPRASW*SVLAGP
Trigger: AGGGCCAGCAAGGACAGAGCACCAACTGGCTCTGGG...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCGAGTATCAGCAACCCTaGCCAACTGTCACACTTGAT +
Preference number: 2 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPEYQQP*PTVTLD
Trigger: ATCAAGTGTGACAGTTGGGCAGGGTTGCTGATACTC...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp CAGTCATACATAACAAAACAACAGCTTCAAACCAGCCCTCGGGAAGCAGAGGCCGTGTTGTCCAATGAGTaGAAGACAGCACACACAGGA +
Preference number: 2 (lower is better)
Translates to: QSYITKQQLQTSPREAEAVLSNE*KTAHTG
Trigger: TCCTGTGTGTGCTGTCTTGCACTCATTGGACAACAC...GGCCTCTGCTTCCCGAGGGCTGGTTTGAAGCTGTTGTTTTGTTATGTATGACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCAGAAAAGACCAAGTCTaGGGGAGGAAGAGCTATCCT +
Preference number: 2 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPRKDQV*GRKSYP
Trigger: AGGATAGCTCTTCCTCCCCCAGACTTGGTCTTTTCT...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACGGCTCCAGAGGCTGTTaGGGCAGGCCTGTGCAACGG +
Preference number: 2 (lower is better)
Translates to: QILEHLESVIHNKTTASNGSRGC*GRPVQR
Trigger: CCGTTGCACAGGCCTGCCCCAACAGCCTCTGGAGCC...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGGCAGTGGTGGTGGCTTaGTGGCAGAGGAAGGAAGTA +
Preference number: 2 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGAVVVA*WQRKEV
Trigger: TACTTCCTTCCTCTGCCACCAAGCCACCACCACTGC...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR TCA 90 bp TCTCCATCAAAGAGGGTGAGGTGGCTCTGTACAGTGACGACGAATCTTTATTTCGAAACCTACATCCCTTaGGGGAAGAATGGCCCTTCT +
Preference number: 2 (lower is better)
Translates to: SPSKRVRWLCTVTTNLYFETYIP*GKNGPS
Trigger: AGAAGGGCCATTCTTCCCTCAAGGGATGTAGGTTTC...GAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR TCA 90 bp CAGTCATACATAACAAAACAACAGCTTCAAACCAGCCCTCGGGAAGCAGAGGCCTTCCCAGCTCCTCCCTaGTGCTTTTGTTACTATATG +
Preference number: 2 (lower is better)
Translates to: QSYITKQQLQTSPREAEAFPAPP*CFCYYM
Trigger: CATATAGTAACAAAAGCATCAGGGAGGAGCTGGGAA...GGCCTCTGCTTCCCGAGGGCTGGTTTGAAGCTGTTGTTTTGTTATGTATGACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR TCA 90 bp TCTCCATCAAAGAGGGTGAGGTGGCTCTGTACAGTGACGACGAATCTTTATTTCCTAACAGTCACTCTGTaGTTACTTCCCAGCTCCTCC +
Preference number: 2 (lower is better)
Translates to: SPSKRVRWLCTVTTNLYFLTVTL*LLPSSS
Trigger: GGAGGAGCTGGGAAGTAATCACAGAGTGACTGTTAG...GAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR TCA 90 bp TCTCCATCAAAGAGGGTGAGGTGGCTCTGTACAGTGACGACGAATCTTTATTTCGTCTTGAGGCTGGAATaGTGGCTTAGGGTGTTAGCA +
Preference number: 2 (lower is better)
Translates to: SPSKRVRWLCTVTTNLYFVLRLE*WLRVLA
Trigger: TGCTAACACCCTAAGCCATCATTCCAGCCTCAAGAC...GAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR TCA 90 bp CAGTCATACATAACAAAACAACAGCTTCAAACCAGCCCTCGGGAAGCAGAGGCCTTCTTGCAGAGGACTTaGGTTAAGTTCCTAGCACAC +
Preference number: 2 (lower is better)
Translates to: QSYITKQQLQTSPREAEAFLQRT*VKFLAH
Trigger: GTGTGCTAGGAACTTAACTCAAGTCCTCTGCAAGAA...GGCCTCTGCTTCCCGAGGGCTGGTTTGAAGCTGTTGTTTTGTTATGTATGACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR TCA 90 bp CAGTCATACATAACAAAACAACAGCTTCAAACCAGCCCTCGGGAAGCAGAGGCCGGTGGCTCTGTACAGTaGCGACGAATCTTTATTTCA +
Preference number: 2 (lower is better)
Translates to: QSYITKQQLQTSPREAEAGGSVQ*RRIFIS
Trigger: TGAAATAAAGATTCGTCGTCACTGTACAGAGCCACC...GGCCTCTGCTTCCCGAGGGCTGGTTTGAAGCTGTTGTTTTGTTATGTATGACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGTTATGCAGATGGGTCTaGTGTAGGGTGTGGGTGCGT +
Preference number: 2 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGLCRWV*CRVWVR
Trigger: ACGCACCCACACCCTACAGCAGACCCATCTGCATAA...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp CAGTCATACATAACAAAACAACAGCTTCAAACCAGCCCTCGGGAAGCAGAGGCCATCTGTCTGTGTTTATaGAGATGGGTCTGCTGTAGG +
Preference number: 2 (lower is better)
Translates to: QSYITKQQLQTSPREAEAICLCL*RWVCCR
Trigger: CCTACAGCAGACCCATCTGCATAAACACAGACAGAT...GGCCTCTGCTTCCCGAGGGCTGGTTTGAAGCTGTTGTTTTGTTATGTATGACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGCCTCCCTTCCAGAGCTaGTTAGCACTCAATGGGTTG +
Preference number: 2 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGPPFQS*LALNGL
Trigger: CAACCCATTGAGTGCTAAGCAGCTCTGGAAGGGAGG...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp AGGGCCCAAAGCTATTCTCCAAAGCTATTCTCCAATCATGAAATCATTCAACATCCCAGAGCCAGTTGGTaGTCTGTCCTTGCTGGCCCT +
Preference number: 2 (lower is better)
Translates to: RAQSYSPKLFSNHEIIQHPRASW*SVLAGP
Trigger: AGGGCCAGCAAGGACAGAGCACCAACTGGCTCTGGG...ATGTTGAATGATTTCATGATTGGAGAATAGCTTTGGAGAATAGCTTTGGGCCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp AGGGCCCAAAGCTATTCTCCAAAGCTATTCTCCAATCATGAAATCATTCAACATCAGGCAGGCTGCTGCTaGTGGCCTTTGCAGAAGCAG +
Preference number: 2 (lower is better)
Translates to: RAQSYSPKLFSNHEIIQHQAGCC*WPLQKQ
Trigger: CTGCTTCTGCAAAGGCCAGCAGCAGCAGCCTGCCTG...ATGTTGAATGATTTCATGATTGGAGAATAGCTTTGGAGAATAGCTTTGGGCCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACGTTGGGGCAGGCCTGTaGAACGGAGGCAGGTTGGGA +
Preference number: 2 (lower is better)
Translates to: QILEHLESVIHNKTTASNVGAGL*NGGRLG
Trigger: TCCCAACCTGCCTCCGTTGCACAGGCCTGCCCCAAC...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp CAGTCATACATAACAAAACAACAGCTTCAAACCAGCCCTCGGGAAGCAGAGGCCTGTTGTCATCTCTGCTaGAGTCTAGAGCCTCTAACT +
Preference number: 2 (lower is better)
Translates to: QSYITKQQLQTSPREAEACCHLC*SLEPLT
Trigger: AGTTAGAGGCTCTAGACTGCAGCAGAGATGACAACA...GGCCTCTGCTTCCCGAGGGCTGGTTTGAAGCTGTTGTTTTGTTATGTATGACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp TCTCCATCAAAGAGGGTGAGGTGGCTCTGTACAGTGACGACGAATCTTTATTTCTGTTCCATGGGCCCTTaGTACCAAGGACTCGTATGT +
Preference number: 2 (lower is better)
Translates to: SPSKRVRWLCTVTTNLYFCSMGP*YQGLVC
Trigger: ACATACGAGTCCTTGGTACCAAGGGCCCATGGAACA...GAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp AGGGCCCAAAGCTATTCTCCAAAGCTATTCTCCAATCATGAAATCATTCAACATAGGCCCAGAGCCAGTTaGTGCTCTGTCCTTGCTGGC +
Preference number: 2 (lower is better)
Translates to: RAQSYSPKLFSNHEIIQHRPRAS*CSVLAG
Trigger: GCCAGCAAGGACAGAGCACCAACTGGCTCTGGGCCT...ATGTTGAATGATTTCATGATTGGAGAATAGCTTTGGAGAATAGCTTTGGGCCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp AGGGCCCAAAGCTATTCTCCAAAGCTATTCTCCAATCATGAAATCATTCAACATTGGCAGCAGTGGTGGTaGCTTGGTGGCAGAGGAAGG +
Preference number: 2 (lower is better)
Translates to: RAQSYSPKLFSNHEIIQHWQQWW*LGGRGR
Trigger: CCTTCCTCTGCCACCAAGCCACCACCACTGCTGCCA...ATGTTGAATGATTTCATGATTGGAGAATAGCTTTGGAGAATAGCTTTGGGCCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp CAGTCATACATAACAAAACAACAGCTTCAAACCAGCCCTCGGGAAGCAGAGGCCCCTTCTGTAAGTCAATaGAGACAGAGCAGGTCACAA +
Preference number: 2 (lower is better)
Translates to: QSYITKQQLQTSPREAEAPSVSQ*RQSRSQ
Trigger: TTGTGACCTGCTCTGTCTCCATTGACTTACAGAAGG...GGCCTCTGCTTCCCGAGGGCTGGTTTGAAGCTGTTGTTTTGTTATGTATGACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCTACAGTACCTTGCACTaGTCCCCTTTGTACATCATC +
Preference number: 2 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPYSTLH*SPLYII
Trigger: GATGATGTACAAAGGGGACCAGTGCAAGGTACTGTA...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CAA 90 bp CCCCATTTGAAGGGCCTATTCAGGTTCACGTCTGGATTTGTGTTTTaGTACATGCGGGTGCATGTCCACATCTGTCTGTGTTTATGCAGA +
Preference number: 2 (lower is better)
Translates to: PHLKGLFRFTSGFVF*YMRVHVHICLCLCR
Trigger: TCTGCATAAACACAGACAGATGTGGACATGCACCCGCATGTACAAAAACACAAATCCAGACGTGAACCTGAATAGGCCCTTCAAATGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR TCA 90 bp TTGTACATCATCCTGCCTTGTGATGGCTCATCTCCTTCATTTTGTCAGGGTCACCTTGGTCTGATTGTATaGACATTGGGAGTCCCAGAG +
Preference number: 2 (lower is better)
Translates to: LYIILPCDGSSPSFCQGHLGLIV*TLGVPE
Trigger: CTCTGGGACTCCCAATGTTCATACAATCAGACCAAG...GTGACCCTGACAAAATGAAGGAGATGAGCCATCACAAGGCAGGATGATGTACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR TCA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCGAAACCTACATCCCTTaGGGGAAGAATGGCCCTTCT +
Preference number: 2 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFETYIP*GKNGPS
Trigger: AGAAGGGCCATTCTTCCCTCAAGGGATGTAGGTTTC...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR TCA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCTTGTCAGGGTCACTTTaGAGAATTCTATTCCTGGCT +
Preference number: 2 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPLSGSL*RILFLA
Trigger: AGCCAGGAATAGAATTCTTCAAAGTGACCCTGACAA...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR TCA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCTTTATGATAGGGTCTTaGGGCTGGAATGATGGCTTA +
Preference number: 2 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPFMIGS*GWNDGL
Trigger: TAAGCCATCATTCCAGCCTCAAGACCCTATCATAAA...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp TCTCCATCAAAGAGGGTGAGGTGGCTCTGTACAGTGACGACGAATCTTTATTTCTACCCCATAGTCTTGTaGCCATCTGTCACTGTCTTG +
Preference number: 2 (lower is better)
Translates to: SPSKRVRWLCTVTTNLYFYPIVL*PSVTVL
Trigger: CAAGACAGTGACAGATGGGCACAAGACTATGGGGTA...GAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACCTTCTCCAGGCAGGCTaGTGCTGCTGGCCTTTGCAG +
Preference number: 2 (lower is better)
Translates to: QILEHLESVIHNKTTASNLLQAG*CCWPLQ
Trigger: CTGCAAAGGCCAGCAGCAGCAGCCTGCCTGGAGAAG...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp TTGTACATCATCCTGCCTTGTGATGGCTCATCTCCTTCATTTTGTCAGGGTCACGAGTATCAGCAACCCTaGCCAACTGTCACACTTGAT +
Preference number: 2 (lower is better)
Translates to: LYIILPCDGSSPSFCQGHEYQQP*PTVTLD
Trigger: ATCAAGTGTGACAGTTGGGCAGGGTTGCTGATACTC...GTGACCCTGACAAAATGAAGGAGATGAGCCATCACAAGGCAGGATGATGTACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp GGCCCTCAAGCCCCATCCATTGCTAGCCTCTTCCTCCTCTTACCCCATAGTCTTATTCAGGTTCACGTCTaGATTTGTGTTTTTGTACAT +
Preference number: 2 (lower is better)
Translates to: GPQAPSIASLFLLLPHSLIQVHV*ICVFVH
Trigger: ATGTACAAAAACACAAATCCAGACGTGAACCTGAAT...AAGACTATGGGGTAAGAGGAGGAAGAGGCTAGCAATGGATGGGGCTTGAGGGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACTGGCAGCAGTGGTGGTaGCTTGGTGGCAGAGGAAGG +
Preference number: 2 (lower is better)
Translates to: QILEHLESVIHNKTTASNWQQWW*LGGRGR
Trigger: CCTTCCTCTGCCACCAAGCCACCACCACTGCTGCCA...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR TCA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGAATGGGGCAAATTTCTaGTATCATGTCCCCAAGGGC +
Preference number: 2 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGNGANF*YHVPKG
Trigger: GCCCTTGGGGACATGATATCAGAAATTTGCCCCATT...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR TCA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGCATCATCCTGCCTTGTaGTGGCTCATCTCCTTCATT +
Preference number: 2 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGHHPAL*WLISFI
Trigger: AATGAAGGAGATGAGCCATCACAAGGCAGGATGATG...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR TCA 90 bp CAGTCATACATAACAAAACAACAGCTTCAAACCAGCCCTCGGGAAGCAGAGGCCGGGATTTTAAACAACTaGCCCTTTACACATGTGACA +
Preference number: 2 (lower is better)
Translates to: QSYITKQQLQTSPREAEAGILNN*PFTHVT
Trigger: TGTCACATGTGTAAAGGGTCAGTTGTTTAAAATCCC...GGCCTCTGCTTCCCGAGGGCTGGTTTGAAGCTGTTGTTTTGTTATGTATGACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp TTGTACATCATCCTGCCTTGTGATGGCTCATCTCCTTCATTTTGTCAGGGTCACTTTTGTACATGCGGGTaGATGTCCACATCTGTCTGT +
Preference number: 2 (lower is better)
Translates to: LYIILPCDGSSPSFCQGHFCTCG*MSTSVC
Trigger: ACAGACAGATGTGGACATGCACCCGCATGTACAAAA...GTGACCCTGACAAAATGAAGGAGATGAGCCATCACAAGGCAGGATGATGTACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACTTGGTGCTCTGTCCTTaGTGGCCCTCAAGCCCCATC +
Preference number: 2 (lower is better)
Translates to: QILEHLESVIHNKTTASNLVLCP*WPSSPI
Trigger: GATGGGGCTTGAGGGCCAGCAAGGACAGAGCACCAA...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTGTCTGCTGTAGGGTGTaGGTGCGTGCGTGTACATAT +
Preference number: 2 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSVCCRV*VRACTY
Trigger: ATATGTACACGCACGCACCCACACCCTACAGCAGAC...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp AGGGCCCAAAGCTATTCTCCAAAGCTATTCTCCAATCATGAAATCATTCAACATTCGGGCTCAAGGAGCTaGTTCCAGCTGCTGTTCCAT +
Preference number: 2 (lower is better)
Translates to: RAQSYSPKLFSNHEIIQHSGSRS*FQLLFH
Trigger: ATGGAACAGCAGCTGGAACCAGCTCCTTGAGCCCGA...ATGTTGAATGATTTCATGATTGGAGAATAGCTTTGGAGAATAGCTTTGGGCCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCCATCTGTCACTGTCTTaGAAGGTCCTTCTCCTTGGT +
Preference number: 2 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFHLSLS*KVLLLG
Trigger: ACCAAGGAGAAGGACCTTCCAAGACAGTGACAGATG...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGAGTTCCAGGCTGGCTTaGTCTACACAGCAAGTTTCA +
Preference number: 2 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGSSRLA*STQQVS
Trigger: TGAAACTTGCTGTGTAGACCAAGCCAGCCTGGAACT...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTTCAAAGAGGGTGAGGTaGCTCTGTACAGTGACGACG +
Preference number: 2 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSSKRVR*LCTVTT
Trigger: CGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGA...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CAA 90 bp GTTCTGGCTTCAATCTTTGTATACAGTACCTTGCACTGGTCCCCTTaGTACATCATCCTGCCTTGTGATGGCTCATCTCCTTCATTTTGT +
Preference number: 2 (lower is better)
Translates to: VLASIFVYSTLHWSP*YIILPCDGSSPSFC
Trigger: ACAAAATGAAGGAGATGAGCCATCACAAGGCAGGATGATGTACAAAGGGGACCAGTGCAAGGTACTGTATACAAAGATTGAAGCCAGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CAA 90 bp TTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCAAGACCAGTTaGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGA +
Preference number: 2 (lower is better)
Translates to: FNPSTQADLYMFKTS*VYLASFRTARTTWR
Trigger: TCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTGGTCTTGAACATATAGAGATCTGCCTGAGTGCTGGGATTAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR TCA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACGCCACCAGTCCAAGATaGGGGCAAGATGATGACCAC +
Preference number: 2 (lower is better)
Translates to: QILEHLESVIHNKTTASNATSPR*GQDDDH
Trigger: GTGGTCATCATCTTGCCCTCATCTTGGACTGGTGGC...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR TCA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCTTCCCAGCTCCTCCCTaGTGCTTTTGTTACTATATG +
Preference number: 2 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFFPAPP*CFCYYM
Trigger: CATATAGTAACAAAAGCATCAGGGAGGAGCTGGGAA...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGCTTTGTACATCATCCTaGCTTGTGATGGCTCATCTC +
Preference number: 2 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGLCTSS*LVMAHL
Trigger: GAGATGAGCCATCACAAGGCAGGATGATGTACAAAG...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp TCTCCATCAAAGAGGGTGAGGTGGCTCTGTACAGTGACGACGAATCTTTATTTCAAACCAACCAAACAATaGAACCCAAGAGCAGAACCT +
Preference number: 2 (lower is better)
Translates to: SPSKRVRWLCTVTTNLYFKPTKQ*NPRAEP
Trigger: AGGTTCTGCTCTTGGGTTGCATTGTTTGGTTGGTTT...GAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp AGGGCCCAAAGCTATTCTCCAAAGCTATTCTCCAATCATGAAATCATTCAACATGTCTGCTGTAGGGTGTaGGTGCGTGCGTGTACATAT +
Preference number: 2 (lower is better)
Translates to: RAQSYSPKLFSNHEIIQHVCCRV*VRACTY
Trigger: ATATGTACACGCACGCACCCACACCCTACAGCAGAC...ATGTTGAATGATTTCATGATTGGAGAATAGCTTTGGAGAATAGCTTTGGGCCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTCTGTGTTTATGCAGATaGGTCTGCTGTAGGGTGTGG +
Preference number: 2 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSLCLCR*VCCRVW
Trigger: CCACACCCTACAGCAGACCCATCTGCATAAACACAG...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCCCTTCTGTAAGTCAATaGAGACAGAGCAGGTCACAA +
Preference number: 2 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFPSVSQ*RQSRSQ
Trigger: TTGTGACCTGCTCTGTCTCCATTGACTTACAGAAGG...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CAA 90 bp CAAGTCTGTTTTCCTACAACCTCCACCCATCAGATCTTGGAGCATTaGGAATCAGTCATACATAACAAAACAACAGCTTCAAACCAGCCC +
Preference number: 2 (lower is better)
Translates to: QVCFPTTSTHQILEH*ESVIHNKTTASNQP
Trigger: GGGCTGGTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTGATGGGTGGAGGTTGTAGGAAAACAGACTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR TCA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTAATGGGGCAAATTTCTaGTATCATGTCCCCAAGGGC +
Preference number: 2 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSNGANF*YHVPKG
Trigger: GCCCTTGGGGACATGATATCAGAAATTTGCCCCATT...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR TCA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGTTTATGATAGGGTCTTaGGGCTGGAATGATGGCTTA +
Preference number: 2 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGFMIGS*GWNDGL
Trigger: TAAGCCATCATTCCAGCCTCAAGACCCTATCATAAA...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR TCA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACTCTAGAGCCTCTAACTaGGCAGAGGATCCCACGTGT +
Preference number: 2 (lower is better)
Translates to: QILEHLESVIHNKTTASNSRASN*AEDPTC
Trigger: ACACGTGGGATCCTCTGCTCAGTTAGAGGCTCTAGA...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGAAACCAACCAAACAATaGAACCCAAGAGCAGAACCT +
Preference number: 2 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGKPTKQ*NPRAEP
Trigger: AGGTTCTGCTCTTGGGTTGCATTGTTTGGTTGGTTT...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp AGGGCCCAAAGCTATTCTCCAAAGCTATTCTCCAATCATGAAATCATTCAACATCTGTGTTTATGCAGATaGGTCTGCTGTAGGGTGTGG +
Preference number: 2 (lower is better)
Translates to: RAQSYSPKLFSNHEIIQHLCLCR*VCCRVW
Trigger: CCACACCCTACAGCAGACCCATCTGCATAAACACAG...ATGTTGAATGATTTCATGATTGGAGAATAGCTTTGGAGAATAGCTTTGGGCCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CAA 90 bp TGGCTTTCTCCTAGTCTTGTTTCCATTTTGTCATCCTCAGAAGGATaGCAGCACACAGACCATGAAAGAACACAGCTTGGTCTTTATTCA +
Preference number: 2 (lower is better)
Translates to: WLSPSLVSILSSSEG*QHTDHERTQLGLYS
Trigger: TGAATAAAGACCAAGCTGTGTTCTTTCATGGTCTGTGTGCTGCAATCCTTCTGAGGATGACAAAATGGAAACAAGACTAGGAGAAAGCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR TCA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACGTCTTGAGGCTGGAATaGTGGCTTAGGGTGTTAGCA +
Preference number: 2 (lower is better)
Translates to: QILEHLESVIHNKTTASNVLRLE*WLRVLA
Trigger: TGCTAACACCCTAAGCCATCATTCCAGCCTCAAGAC...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR TCA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACACTGAAGCTTCTCACTaGTGGGTCCCTGCTTTGCTA +
Preference number: 2 (lower is better)
Translates to: QILEHLESVIHNKTTASNTEASH*WVPALL
Trigger: TAGCAAAGCAGGGACCCATCAGTGAGAAGCTTCAGT...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR TCA 90 bp TCTCCATCAAAGAGGGTGAGGTGGCTCTGTACAGTGACGACGAATCTTTATTTCATTAATTTGGAACTGTaGGATTCGCCTTTTCTCATC +
Preference number: 2 (lower is better)
Translates to: SPSKRVRWLCTVTTNLYFINLEL*DSPFLI
Trigger: GATGAGAAAAGGCGAATCTCACAGTTCCAAATTAAT...GAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp AGGGCCCAAAGCTATTCTCCAAAGCTATTCTCCAATCATGAAATCATTCAACATGAGGAAGAGCTATCCTaGTCTTTAAAGCTCCCGAGT +
Preference number: 2 (lower is better)
Translates to: RAQSYSPKLFSNHEIIQHEEELS*SLKLPS
Trigger: ACTCGGGAGCTTTAAAGAGCAGGATAGCTCTTCCTC...ATGTTGAATGATTTCATGATTGGAGAATAGCTTTGGAGAATAGCTTTGGGCCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp TCTCCATCAAAGAGGGTGAGGTGGCTCTGTACAGTGACGACGAATCTTTATTTCAGGAAGTATTATTTTTaGTGTTTCATTAGGAGGCCC +
Preference number: 2 (lower is better)
Translates to: SPSKRVRWLCTVTTNLYFRKYYF*CFIRRP
Trigger: GGGCCTCCTAATGAAACAGCAAAAATAATACTTCCT...GAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTAAATCCTGTCTGTGTTaGCCAGCCAGGCCTTTAAAA +
Preference number: 2 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSKSCLC*PARPLK
Trigger: TTTTAAAGGCCTGGCTGGGCAACACAGACAGGATTT...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACCCTTGTATTTATTTGTaGCCCCCACCCCCACTACCA +
Preference number: 2 (lower is better)
Translates to: QILEHLESVIHNKTTASNPCIYL*PPPPLP
Trigger: TGGTAGTGGGGGTGGGGGGCACAAATAAATACAAGG...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACCATCCCATAGTCATTTaGCCACACTGGGCACATCTC +
Preference number: 2 (lower is better)
Translates to: QILEHLESVIHNKTTASNHPIVI*PHWAHL
Trigger: GAGATGTGCCCAGTGTGGGCAAATGACTATGGGATG...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACTGTTCCATGGGCCCTTaGTACCAAGGACTCGTATGT +
Preference number: 2 (lower is better)
Translates to: QILEHLESVIHNKTTASNCSMGP*YQGLVC
Trigger: ACATACGAGTCCTTGGTACCAAGGGCCCATGGAACA...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR TCA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACCTTGGTCTGATTGTATaGACATTGGGAGTCCCAGAG +
Preference number: 2 (lower is better)
Translates to: QILEHLESVIHNKTTASNLGLIV*TLGVPE
Trigger: CTCTGGGACTCCCAATGTTCATACAATCAGACCAAG...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp AGGGCCCAAAGCTATTCTCCAAAGCTATTCTCCAATCATGAAATCATTCAACATTTTTGTACATGCGGGTaGATGTCCACATCTGTCTGT +
Preference number: 2 (lower is better)
Translates to: RAQSYSPKLFSNHEIIQHFCTCG*MSTSVC
Trigger: ACAGACAGATGTGGACATGCACCCGCATGTACAAAA...ATGTTGAATGATTTCATGATTGGAGAATAGCTTTGGAGAATAGCTTTGGGCCCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGAGGAAGTATTATTTTTaGTGTTTCATTAGGAGGCCC +
Preference number: 2 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGRKYYF*CFIRRP
Trigger: GGGCCTCCTAATGAAACAGCAAAAATAATACTTCCT...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp TCTCCATCAAAGAGGGTGAGGTGGCTCTGTACAGTGACGACGAATCTTTATTTCAGCATGTATTATTCTTaGAGAGGACTTGAGTTAAGT +
Preference number: 2 (lower is better)
Translates to: SPSKRVRWLCTVTTNLYFSMYYS*RGLELS
Trigger: ACTTAACTCAAGTCCTCTGCAAGAATAATACATGCT...GAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACGTGTTGTCCAATGAGTaGAAGACAGCACACACAGGA +
Preference number: 2 (lower is better)
Translates to: QILEHLESVIHNKTTASNVLSNE*KTAHTG
Trigger: TCCTGTGTGTGCTGTCTTGCACTCATTGGACAACAC...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp TTGTACATCATCCTGCCTTGTGATGGCTCATCTCCTTCATTTTGTCAGGGTCACATTCAGGTTCACGTCTaGATTTGTGTTTTTGTACAT +
Preference number: 2 (lower is better)
Translates to: LYIILPCDGSSPSFCQGHIQVHV*ICVFVH
Trigger: ATGTACAAAAACACAAATCCAGACGTGAACCTGAAT...GTGACCCTGACAAAATGAAGGAGATGAGCCATCACAAGGCAGGATGATGTACAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTAATTCCACACAACTGTaGTCATGGCCTTCTCTTCAA +
Preference number: 2 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSNSTQL*SWPSLQ
Trigger: TTGAAGAGAAGGCCATGACCACAGTTGTGTGGAATT...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR TCA 90 bp AGGGCCCAAAGCTATTCTCCAAAGCTATTCTCCAATCATGAAATCATTCAACATGTCCCCCAGAGAAATTaGTCTCCAATTCACAGAAAA +
Preference number: 2 (lower is better)
Translates to: RAQSYSPKLFSNHEIIQHVPQRN*SPIHRK
Trigger: TTTTCTGTGAATTGGAGATCAATTTCTCTGGGGGAC...ATGTTGAATGATTTCATGATTGGAGAATAGCTTTGGAGAATAGCTTTGGGCCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACTTTTGTACATGCGGGTaGATGTCCACATCTGTCTGT +
Preference number: 2 (lower is better)
Translates to: QILEHLESVIHNKTTASNFCTCG*MSTSVC
Trigger: ACAGACAGATGTGGACATGCACCCGCATGTACAAAA...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR TCA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACTTTATGATAGGGTCTTaGGGCTGGAATGATGGCTTA +
Preference number: 2 (lower is better)
Translates to: QILEHLESVIHNKTTASNFMIGS*GWNDGL
Trigger: TAAGCCATCATTCCAGCCTCAAGACCCTATCATAAA...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR GCA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTGGAGAGATAGCTCAGTaGTTAAGAGCATGTATTATT +
Preference number: 2 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSGEIAQ*LRACII
Trigger: AATAATACATGCTCTTAAGCACTGAGCTATCTCTCC...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTAAAGGACAAACTCCATaGGTTTCCGTTAGTGTTTTA +
Preference number: 2 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSKGQTP*VSVSVL
Trigger: TAAAACACTAACGGAAACCCATGGAGTTTGTCCTTT...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACATAATCTTGAACTCCTaGTCCTCTCTTTCCTGTTCC +
Preference number: 2 (lower is better)
Translates to: QILEHLESVIHNKTTASNIILNS*SSLSCS
Trigger: GGAACAGGAAAGAGAGGACCAGGAGTTCAAGATTAT...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTATTCAGGTTCACGTCTaGATTTGTGTTTTTGTACAT +
Preference number: 2 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSIQVHV*ICVFVH
Trigger: ATGTACAAAAACACAAATCCAGACGTGAACCTGAAT...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp AGGGCCCAAAGCTATTCTCCAAAGCTATTCTCCAATCATGAAATCATTCAACATAAAGGACAAACTCCATaGGTTTCCGTTAGTGTTTTA +
Preference number: 2 (lower is better)
Translates to: RAQSYSPKLFSNHEIIQHKGQTP*VSVSVL
Trigger: TAAAACACTAACGGAAACCCATGGAGTTTGTCCTTT...ATGTTGAATGATTTCATGATTGGAGAATAGCTTTGGAGAATAGCTTTGGGCCCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CCA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACAAATTCCAGGCTGGCTaGGTCTACATAGTAATATCT +
Preference number: 2 (lower is better)
Translates to: QILEHLESVIHNKTTASNKFQAG*VYIVIS
Trigger: AGATATTACTATGTAGACCCAGCCAGCCTGGAATTT...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR TCA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACATTAATTTGGAACTGTaGGATTCGCCTTTTCTCATC +
Preference number: 2 (lower is better)
Translates to: QILEHLESVIHNKTTASNINLEL*DSPFLI
Trigger: GATGAGAAAAGGCGAATCTCACAGTTCCAAATTAAT...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR TCA 72 bp GAGGCCACAGGCTGCTGGAGCATTGAGCTTCCAGCCTaGGCAGGCCCCTGGCTCCAGAGGCTGTTGGGGCAG +
Preference number: 3 (lower is better)
Translates to: EATGCWSIELPA*AGPWLQRLLGQ
Trigger: CTGCCCCAACAGCCTCTGGAGCCAGGGGCCTGCTCAGGCTGGAAGCTCAATGCTCCAGCAGCCTGTGGCCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR TCA 72 bp TGCTACAAGGCAGGAGGCCACAGGCTGCTGGAGCATTaGGCTTCCAGCCTGAGCAGGCCCCTGGCTCCAGAG +
Preference number: 3 (lower is better)
Translates to: CYKAGGHRLLEH*ASSLSRPLAPE
Trigger: CTCTGGAGCCAGGGGCCTGCTCAGGCTGGAAGCTCAATGCTCCAGCAGCCTGTGGCCTCCTGCCTTGTAGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CCA 72 bp GGGCCCCAGGAGTGTCTGTGGTCGGGCTCAAGGAGCTaGTTCCAGCTGCTGTTCCATGGGCCCTTGGTACCA +
Preference number: 3 (lower is better)
Translates to: GPQECLWSGSRS*FQLLFHGPLVP
Trigger: TGGTACCAAGGGCCCATGGAACAGCAGCTGGAACCAGCTCCTTGAGCCCGACCACAGACACTCCTGGGGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR GCA 72 bp TCTGTAGTCCTCTCTGGGAGGCCCAGAGCCAGTTGGTaGTCTGTCCTTGCTGGCCCTCAAGCCCCATCCATT +
Preference number: 3 (lower is better)
Translates to: SVVLSGRPRASW*SVLAGPQAPSI
Trigger: AATGGATGGGGCTTGAGGGCCAGCAAGGACAGAGCACCAACTGGCTCTGGGCCTCCCAGAGAGGACTACAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CCA 72 bp AGGAAGAGCAGGGCTGCAGACGGAGCTCGGTGGGAATaGAGCTCATCTAGCGCACATAAGGCTTTCGGGTCC +
Preference number: 3 (lower is better)
Translates to: RKSRAADGARWE*SSSSAHKAFGS
Trigger: GGACCCGAAAGCCTTATGTGCGCTAGATGAGCTCCATTCCCACCGAGCTCCGTCTGCAGCCCTGCTCTTCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR GCA 72 bp AGTGTCTGTGGTCGGGCTCAAGGAGCTGGTTCCAGCTaGTGTTCCATGGGCCCTTGGTACCAAGGACTCGTA +
Preference number: 3 (lower is better)
Translates to: SVCGRAQGAGSS*CSMGPWYQGLV
Trigger: TACGAGTCCTTGGTACCAAGGGCCCATGGAACAGCAGCTGGAACCAGCTCCTTGAGCCCGACCACAGACACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp GGCCCTCAAGCCCCATCCATTGCTAGCCTCTTCCTCCTCTTACCCCATAGTCTTCTCCCGAGTCTGCAGTaGGTAGAGGTGCAGTTCCGA +
Preference number: 3 (lower is better)
Translates to: GPQAPSIASLFLLLPHSLLPSLQ*VEVQFR
Trigger: TCGGAACTGCACCTCTACCAACTGCAGACTCGGGAG...AAGACTATGGGGTAAGAGGAGGAAGAGGCTAGCAATGGATGGGGCTTGAGGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR GCA 72 bp GTCCATTGCCAGCACTGTCGCATCTGCACATGGGGGTaGACATCCGTGGTCCTAGTACTCAGGAGATGGAAG +
Preference number: 3 (lower is better)
Translates to: VHCQHCRICTWG*TSVVLVLRRWK
Trigger: CTTCCATCTCCTGAGTACTAGGACCACGGATGTGCACCCCCATGTGCAGATGCGACAGTGCTGGCAATGGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCGAGGCCCAGAGCCAGTaGGTGCTCTGTCCTTGCTGG +
Preference number: 3 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPEAQSQ*VLCPCW
Trigger: CCAGCAAGGACAGAGCACCAACTGGCTCTGGGCCTC...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR GCA 72 bp TACATGCGGGTGCATGTCCACATCTGTCTGTGTTTATaGAGATGGGTCTGCTGTAGGGTGTGGGTGCGTGCG +
Preference number: 3 (lower is better)
Translates to: YMRVHVHICLCL*RWVCCRVWVRA
Trigger: CGCACGCACCCACACCCTACAGCAGACCCATCTGCATAAACACAGACAGATGTGGACATGCACCCGCATGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CCA 72 bp CGGGTGCATGTCCACATCTGTCTGTGTTTATGCAGATaGGTCTGCTGTAGGGTGTGGGTGCGTGCGTGTACA +
Preference number: 3 (lower is better)
Translates to: RVHVHICLCLCR*VCCRVWVRACT
Trigger: TGTACACGCACGCACCCACACCCTACAGCAGACCCATCTGCATAAACACAGACAGATGTGGACATGCACCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCTGCTGCTGCTGGCCTTaGCAGAAGCAGGTCACCCTG +
Preference number: 3 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPCCCWP*QKQVTL
Trigger: CAGGGTGACCTGCTTCTGCAAAGGCCAGCAGCAGCA...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCCAGGCTGCTGGAGCATaGAGCTTCCAGCCTGAGCAG +
Preference number: 3 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPQAAGA*SFQPEQ
Trigger: CTGCTCAGGCTGGAAGCTCAATGCTCCAGCAGCCTG...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR TCA 72 bp CAGAGGTCAAGCCTCCTCCTAGCCACCAGTCCAAGATaGGGGCAAGATGATGACCACGATAGTGGTGGCATT +
Preference number: 3 (lower is better)
Translates to: QRSSLLLATSPR*GQDDDHDSGGI
Trigger: AATGCCACCACTATCGTGGTCATCATCTTGCCCTCATCTTGGACTGGTGGCTAGGAGGAGGCTTGACCTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCAGCAGTGGTGGTGGCTaGGTGGCAGAGGAAGGAAGT +
Preference number: 3 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPSSGGG*VAEEGS
Trigger: ACTTCCTTCCTCTGCCACCAAGCCACCACCACTGCT...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR TCA 72 bp CATAACTCCAGTTCCAGGGGCTCCAGCTCCTTTTTCTaGCCTCCATGGGCATCAGACACTCTCATGGTACAC +
Preference number: 3 (lower is better)
Translates to: HNSSSRGSSSFF*PPWASDTLMVH
Trigger: GTGTACCATGAGAGTGTCTGATGCCCATGGAGGTCAGAAAAAGGAGCTGGAGCCCCTGGAACTGGAGTTATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp GGCCCTCAAGCCCCATCCATTGCTAGCCTCTTCCTCCTCTTACCCCATAGTCTTGGTTCACGTCTGGATTaGTGTTTTTGTACATGCGGG +
Preference number: 3 (lower is better)
Translates to: GPQAPSIASLFLLLPHSLGSRLD*CFCTCG
Trigger: CCCGCATGTACAAAAACACAAATCCAGACGTGAACC...AAGACTATGGGGTAAGAGGAGGAAGAGGCTAGCAATGGATGGGGCTTGAGGGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp TTGTACATCATCCTGCCTTGTGATGGCTCATCTCCTTCATTTTGTCAGGGTCACCAGAGCGTCCTGATCTaGGAGCCCTCCCTTCCAGAG +
Preference number: 3 (lower is better)
Translates to: LYIILPCDGSSPSFCQGHQSVLI*EPSLPE
Trigger: CTCTGGAAGGGAGGGCTCCAAGATCAGGACGCTCTG...GTGACCCTGACAAAATGAAGGAGATGAGCCATCACAAGGCAGGATGATGTACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGGAGGCCCAGAGCCAGTaGGTGCTCTGTCCTTGCTGG +
Preference number: 3 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGEAQSQ*VLCPCW
Trigger: CCAGCAAGGACAGAGCACCAACTGGCTCTGGGCCTC...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGTGCTGCTGCTGGCCTTaGCAGAAGCAGGTCACCCTG +
Preference number: 3 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGCCCWP*QKQVTL
Trigger: CAGGGTGACCTGCTTCTGCAAAGGCCAGCAGCAGCA...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCCAGGCTGCTGGAGCATaGAGCTTCCAGCCTGAGCAG +
Preference number: 3 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFQAAGA*SFQPEQ
Trigger: CTGCTCAGGCTGGAAGCTCAATGCTCCAGCAGCCTG...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCAGGATGAGAGAGGCTTaGTGCAGGGGGCCCAGGACA +
Preference number: 3 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFRMREA*CRGPRT
Trigger: TGTCCTGGGCCCCCTGCACAAAGCCTCTCTCATCCT...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCCACAATGCTAACCCTTaGAGGCCCCACCTTGAATCC +
Preference number: 3 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPHNANP*RPHLES
Trigger: GGATTCAAGGTGGGGCCTCAAAGGGTTAGCATTGTG...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp CAGTCATACATAACAAAACAACAGCTTCAAACCAGCCCTCGGGAAGCAGAGGCCGAGTTCCAGGCTGGCTaGGTCTACACAGCAAGTTTC +
Preference number: 3 (lower is better)
Translates to: QSYITKQQLQTSPREAEAEFQAG*VYTASF
Trigger: GAAACTTGCTGTGTAGACCAAGCCAGCCTGGAACTC...GGCCTCTGCTTCCCGAGGGCTGGTTTGAAGCTGTTGTTTTGTTATGTATGACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR TCA 72 bp GGCCCTTGGTACCAAGGACTCGTATGTGTCCCCATTTaGAGGGCCTATTCAGGTTCACGTCTGGATTTGTGT +
Preference number: 3 (lower is better)
Translates to: GPWYQGLVCVPI*RAYSGSRLDLC
Trigger: ACACAAATCCAGACGTGAACCTGAATAGGCCCTTCAAATGGGGACACATACGAGTCCTTGGTACCAAGGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR TCA 72 bp GACCTAAGCAATGTCACCATCCAGGCCCTCAGAGGGTaGAGGACACAGCACAGTCATTTCATTTGGCAGCTA +
Preference number: 3 (lower is better)
Translates to: DLSNVTIQALRG*RTQHSHFIWQL
Trigger: TAGCTGCCAAATGAAATGACTGTGCTGTGTCCTTCACCCTCTGAGGGCCTGGATGGTGACATTGCTTAGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR TCA 72 bp CCTCTAACTGAGCAGAGGATCCCACGTGTTGTCCAATaGGTGCAAGACAGCACACACAGGATGTTTCTCTCC +
Preference number: 3 (lower is better)
Translates to: PLTEQRIPRVVQ*VQDSTHRMFLS
Trigger: GGAGAGAAACATCCTGTGTGTGCTGTCTTGCACTCATTGGACAACACGTGGGATCCTCTGCTCAGTTAGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR GCA 72 bp GAGAAAAGACCAAGTCTGGGGGAGGAAGAGCTATCCTaGTCTTTAAAGCTCCCGAGTCTGCAGTTGGTAGAG +
Preference number: 3 (lower is better)
Translates to: EKRPSLGEEELS*SLKLPSLQLVE
Trigger: CTCTACCAACTGCAGACTCGGGAGCTTTAAAGAGCAGGATAGCTCTTCCTCCCCCAGACTTGGTCTTTTCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR GCA 72 bp TTGCTAGCCTCTTCCTCCTCTTACCCCATAGTCTTGTaGCCATCTGTCACTGTCTTGGAAGGTCCTTCTCCT +
Preference number: 3 (lower is better)
Translates to: LLASSSSYPIVL*PSVTVLEGPSP
Trigger: AGGAGAAGGACCTTCCAAGACAGTGACAGATGGGCACAAGACTATGGGGTAAGAGGAGGAAGAGGCTAGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR GCA 72 bp ACCCTATTCGTATACCCTATGAACACAAATGATTTGTaGGACGTGAGCTCAGGGCCCCTGCTCCGAAGTGAG +
Preference number: 3 (lower is better)
Translates to: TLFVYPMNTNDL*DVSSGPLLRSE
Trigger: CTCACTTCGGAGCAGGGGCCCTGAGCTCACGTCGCACAAATCATTTGTGTTCATAGGGTATACGAATAGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CCA 72 bp TGCCCATCTGTCACTGTCTTGGAAGGTCCTTCTCCTTaGTCTGATTGTATGAACATTGGGAGTCCCAGAGCC +
Preference number: 3 (lower is better)
Translates to: CPSVTVLEGPSP*SDCMNIGSPRA
Trigger: GGCTCTGGGACTCCCAATGTTCATACAATCAGACCAAGGAGAAGGACCTTCCAAGACAGTGACAGATGGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CCA 72 bp TGGGGGTGCACATCCGTGGTCCTAGTACTCAGGAGATaGAAGCAGGAGGGTCAGAATTTGGAGTCATATTCT +
Preference number: 3 (lower is better)
Translates to: WGCTSVVLVLRR*KQEGQNLESYS
Trigger: AGAATATGACTCCAAATTCTGACCCTCCTGCTTCCATCTCCTGAGTACTAGGACCACGGATGTGCACCCCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCACGATAGTGGTGGCATaGGAGGAGGTGGTGGCAGCA +
Preference number: 3 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFTIVVA*EEVVAA
Trigger: TGCTGCCACCACCTCCTCCAATGCCACCACTATCGT...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp CAGTCATACATAACAAAACAACAGCTTCAAACCAGCCCTCGGGAAGCAGAGGCCGCACAGTCATTTCATTaGGCAGCTACTGGTGGGAGT +
Preference number: 3 (lower is better)
Translates to: QSYITKQQLQTSPREAEAAQSFH*AATGGS
Trigger: ACTCCCACCAGTAGCTGCCAAATGAAATGACTGTGC...GGCCTCTGCTTCCCGAGGGCTGGTTTGAAGCTGTTGTTTTGTTATGTATGACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR GCA 72 bp ATGGAAGCAGGAGGGTCAGAATTTGGAGTCATATTCTaGTACACAGTGAATTTGAGGCCAGCCCAGGCTCCA +
Preference number: 3 (lower is better)
Translates to: MEAGGSEFGVIF*YTVNLRPAQAP
Trigger: TGGAGCCTGGGCTGGCCTCAAATTCACTGTGTAGCAGAATATGACTCCAAATTCTGACCCTCCTGCTTCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp AGGGCCCAAAGCTATTCTCCAAAGCTATTCTCCAATCATGAAATCATTCAACATGAGGCCCAGAGCCAGTaGGTGCTCTGTCCTTGCTGG +
Preference number: 3 (lower is better)
Translates to: RAQSYSPKLFSNHEIIQHEAQSQ*VLCPCW
Trigger: CCAGCAAGGACAGAGCACCAACTGGCTCTGGGCCTC...ATGTTGAATGATTTCATGATTGGAGAATAGCTTTGGAGAATAGCTTTGGGCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR GCA 72 bp ACAGTACCTTGCACTGGTCCCCTTTGTACATCATCCTaGCTTGTGATGGCTCATCTCCTTCATTTTGTCAGG +
Preference number: 3 (lower is better)
Translates to: TVPCTGPLCTSS*LVMAHLLHFVR
Trigger: CCTGACAAAATGAAGGAGATGAGCCATCACAAGGCAGGATGATGTACAAAGGGGACCAGTGCAAGGTACTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR GCA 72 bp TTTCTGTGGGGTTTGAAAAACCACCACCAGGTGTTCTaGAGAGATGCCGTTGGAACTGCAATTGAGCAGATC +
Preference number: 3 (lower is better)
Translates to: FLWGLKNHHQVF*RDAVGTAIEQI
Trigger: GATCTGCTCAATTGCAGTTCCAACGGCATCTCTGCAGAACACCTGGTGGTGGTTTTTCAAACCCCACAGAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTCTCCCGAGTCTGCAGTaGGTAGAGGTGCAGTTCCGA +
Preference number: 3 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSLPSLQ*VEVQFR
Trigger: TCGGAACTGCACCTCTACCAACTGCAGACTCGGGAG...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGCCATCTGTCACTGTCTaGGAAGGTCCTTCTCCTTGG +
Preference number: 3 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGPSVTV*EGPSPW
Trigger: CCAAGGAGAAGGACCTTCCAAGACAGTGACAGATGG...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCTGCAACGGAGGCAGGTaGGGAGTGCTAACTGGATTT +
Preference number: 3 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFCNGGR*GVLTGF
Trigger: AAATCCAGTTAGCACTCCCAACCTGCCTCCGTTGCA...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp CAGTCATACATAACAAAACAACAGCTTCAAACCAGCCCTCGGGAAGCAGAGGCCGATGGCTTTCCTTTTTaGAGCATGGTTCCTGATGGT +
Preference number: 3 (lower is better)
Translates to: QSYITKQQLQTSPREAEADGFPF*SMVPDG
Trigger: ACCATCAGGAACCATGCTCAAAAAAGGAAAGCCATC...GGCCTCTGCTTCCCGAGGGCTGGTTTGAAGCTGTTGTTTTGTTATGTATGACTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp AGGGCCCAAAGCTATTCTCCAAAGCTATTCTCCAATCATGAAATCATTCAACATCTCCCGAGTCTGCAGTaGGTAGAGGTGCAGTTCCGA +
Preference number: 3 (lower is better)
Translates to: RAQSYSPKLFSNHEIIQHLPSLQ*VEVQFR
Trigger: TCGGAACTGCACCTCTACCAACTGCAGACTCGGGAG...ATGTTGAATGATTTCATGATTGGAGAATAGCTTTGGAGAATAGCTTTGGGCCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp AGGGCCCAAAGCTATTCTCCAAAGCTATTCTCCAATCATGAAATCATTCAACATACGATAGTGGTGGCATaGGAGGAGGTGGTGGCAGCA +
Preference number: 3 (lower is better)
Translates to: RAQSYSPKLFSNHEIIQHTIVVA*EEVVAA
Trigger: TGCTGCCACCACCTCCTCCAATGCCACCACTATCGT...ATGTTGAATGATTTCATGATTGGAGAATAGCTTTGGAGAATAGCTTTGGGCCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp CAGTCATACATAACAAAACAACAGCTTCAAACCAGCCCTCGGGAAGCAGAGGCCTTTGTCAGGGTCACTTaGAAGAATTCTATTCCTGGC +
Preference number: 3 (lower is better)
Translates to: QSYITKQQLQTSPREAEAFVRVT*KNSIPG
Trigger: GCCAGGAATAGAATTCTTCAAAGTGACCCTGACAAA...GGCCTCTGCTTCCCGAGGGCTGGTTTGAAGCTGTTGTTTTGTTATGTATGACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR TCA 72 bp TTCTGTAAGTCAATGGAGACAGAGCAGGTCACAAGCTaGTGCCACATATCCACAGGAGAAAGCGTTTCAGCA +
Preference number: 3 (lower is better)
Translates to: FCKSMETEQVTS*CHISTGESVSA
Trigger: TGCTGAAACGCTTTCTCCTGTGGATATGTGGCATCAGCTTGTGACCTGCTCTGTCTCCATTGACTTACAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR TCA 72 bp GGCCCAAAGCTATTCTCCAAAGCTATTCTCCAATCATaGAATCATTCAACATGCATTCCCTCTCCCGGTCCC +
Preference number: 3 (lower is better)
Translates to: GPKLFSKAILQS*NHSTCIPSPGP
Trigger: GGGACCGGGAGAGGGAATGCATGTTGAATGATTTCATGATTGGAGAATAGCTTTGGAGAATAGCTTTGGGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR GCA 72 bp GGTTCACGTCTGGATTTGTGTTTTTGTACATGCGGGTaGATGTCCACATCTGTCTGTGTTTATGCAGATGGG +
Preference number: 3 (lower is better)
Translates to: GSRLDLCFCTCG*MSTSVCVYADG
Trigger: CCCATCTGCATAAACACAGACAGATGTGGACATGCACCCGCATGTACAAAAACACAAATCCAGACGTGAACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CCA 72 bp GTTCTGGCTTCAATCTTTGTATACAGTACCTTGCACTaGTCCCCTTTGTACATCATCCTGCCTTGTGATGGC +
Preference number: 3 (lower is better)
Translates to: VLASIFVYSTLH*SPLYIILPCDG
Trigger: GCCATCACAAGGCAGGATGATGTACAAAGGGGACCAGTGCAAGGTACTGTATACAAAGATTGAAGCCAGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CCA 72 bp TCTCCCAAGAATGCTTCGTCTAATTCCACACAACTGTaGTCATGGCCTTCTCTTCAAGGACTTTCCCAGTCT +
Preference number: 3 (lower is better)
Translates to: SPKNASSNSTQL*SWPSLQGLSQS
Trigger: AGACTGGGAAAGTCCTTGAAGAGAAGGCCATGACCACAGTTGTGTGGAATTAGACGAAGCATTCTTGGGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTGGAAACCTACATCCCTaGAGGGAAGAATGGCCCTTC +
Preference number: 3 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSGNLHP*REEWPF
Trigger: GAAGGGCCATTCTTCCCTCAAGGGATGTAGGTTTCC...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR GCA 72 bp AGAATTCTATTCCTGGCTTCCGAGTATCAGCAACCCTaGCCAACTGTCACACTTGATGAGCAGATTTCAACT +
Preference number: 3 (lower is better)
Translates to: RILFLASEYQQP*PTVTLDEQIST
Trigger: AGTTGAAATCTGCTCATCAAGTGTGACAGTTGGGCAGGGTTGCTGATACTCGGAAGCCAGGAATAGAATTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CCA 72 bp TCATTTTGTCAGGGTCACTTTGAAGAATTCTATTCCTaGCTTCCGAGTATCAGCAACCCTGCCCAACTGTCA +
Preference number: 3 (lower is better)
Translates to: SFCQGHFEEFYS*LPSISNPAQLS
Trigger: TGACAGTTGGGCAGGGTTGCTGATACTCGGAAGCCAGGAATAGAATTCTTCAAAGTGACCCTGACAAAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CCA 72 bp AGGACTTTCCCAGTCTCTCCATCAAAGAGGGTGAGGTaGCTCTGTACAGTGACGACGAATCTTTATTTCATT +
Preference number: 3 (lower is better)
Translates to: RTFPVSPSKRVR*LCTVTTNLYFI
Trigger: AATGAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGAGACTGGGAAAGTCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CCA 72 bp AAGAATGCTTCGTCTAATTCCACACAACTGTGGTCATaGCCTTCTCTTCAAGGACTTTCCCAGTCTCTCCAT +
Preference number: 3 (lower is better)
Translates to: KNASSNSTQLWS*PSLQGLSQSLH
Trigger: ATGGAGAGACTGGGAAAGTCCTTGAAGAGAAGGCCATGACCACAGTTGTGTGGAATTAGACGAAGCATTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CCA 72 bp GGCCAGCCTGGTCAACATAGCAAATTCCAGGCTGGCTaGGTCTACATAGTAATATCTCATCTAAAACAAACC +
Preference number: 3 (lower is better)
Translates to: GQPGQHSKFQAG*VYIVISHLKQT
Trigger: GGTTTGTTTTAGATGAGATATTACTATGTAGACCCAGCCAGCCTGGAATTTGCTATGTTGACCAGGCTGGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp AGGGCCCAAAGCTATTCTCCAAAGCTATTCTCCAATCATGAAATCATTCAACATGGAAACCTACATCCCTaGAGGGAAGAATGGCCCTTC +
Preference number: 3 (lower is better)
Translates to: RAQSYSPKLFSNHEIIQHGNLHP*REEWPF
Trigger: GAAGGGCCATTCTTCCCTCAAGGGATGTAGGTTTCC...ATGTTGAATGATTTCATGATTGGAGAATAGCTTTGGAGAATAGCTTTGGGCCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp TTGTACATCATCCTGCCTTGTGATGGCTCATCTCCTTCATTTTGTCAGGGTCACAGTCCCCCAGAGAAATaGATCTCCAATTCACAGAAA +
Preference number: 3 (lower is better)
Translates to: LYIILPCDGSSPSFCQGHSPPEK*ISNSQK
Trigger: TTTCTGTGAATTGGAGATCAATTTCTCTGGGGGACT...GTGACCCTGACAAAATGAAGGAGATGAGCCATCACAAGGCAGGATGATGTACAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp TCTCCATCAAAGAGGGTGAGGTGGCTCTGTACAGTGACGACGAATCTTTATTTCGGCTTTCTCCTAGTCTaGTTTCCATTTTGTCATCCT +
Preference number: 3 (lower is better)
Translates to: SPSKRVRWLCTVTTNLYFGFLLV*FPFCHP
Trigger: AGGATGACAAAATGGAAACAAGACTAGGAGAAAGCC...GAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR TCA 72 bp GATCTCCAATTCACAGAAAAGGAAACCTACATCCCTTaGGGGAAGAATGGCCCTTCTGTAAGTCAATGGAGA +
Preference number: 3 (lower is better)
Translates to: DLQFTEKETYIP*GKNGPSVSQWR
Trigger: TCTCCATTGACTTACAGAAGGGCCATTCTTCCCTCAAGGGATGTAGGTTTCCTTTTCTGTGAATTGGAGATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR TCA 72 bp TTTGTCATCCTCAGAAGGATTGCAGCACACAGACCATaGAAGAACACAGCTTGGTCTTTATTCAGGAGTCAC +
Preference number: 3 (lower is better)
Translates to: FVILRRIAAHRP*KNTAWSLFRSH
Trigger: GTGACTCCTGAATAAAGACCAAGCTGTGTTCTTTCATGGTCTGTGTGCTGCAATCCTTCTGAGGATGACAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCTTAGCACTCAATGGGTaGGAAAAGCATTGGTTCCAA +
Preference number: 3 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFLALNG*EKHWFQ
Trigger: TTGGAACCAATGCTTTTCCAACCCATTGAGTGCTAA...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACCCATCTGTCACTGTCTaGGAAGGTCCTTCTCCTTGG +
Preference number: 3 (lower is better)
Translates to: QILEHLESVIHNKTTASNPSVTV*EGPSPW
Trigger: CCAAGGAGAAGGACCTTCCAAGACAGTGACAGATGG...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGAGTCCCCCAGAGAAATaGATCTCCAATTCACAGAAA +
Preference number: 3 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGSPPEK*ISNSQK
Trigger: TTTCTGTGAATTGGAGATCAATTTCTCTGGGGGACT...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACCACAATGCTAACCCTTaGAGGCCCCACCTTGAATCC +
Preference number: 3 (lower is better)
Translates to: QILEHLESVIHNKTTASNHNANP*RPHLES
Trigger: GGATTCAAGGTGGGGCCTCAAAGGGTTAGCATTGTG...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACGAGTTCCAGGCTGGCTaGGTCTACACAGCAAGTTTC +
Preference number: 3 (lower is better)
Translates to: QILEHLESVIHNKTTASNEFQAG*VYTASF
Trigger: GAAACTTGCTGTGTAGACCAAGCCAGCCTGGAACTC...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACTTGCACTGGTCCCCTTaGTACATCATCCTGCCTTGT +
Preference number: 3 (lower is better)
Translates to: QILEHLESVIHNKTTASNLHWSP*YIILPC
Trigger: ACAAGGCAGGATGATGTACAAAGGGGACCAGTGCAA...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTGATGGCTTTCCTTTTTaGAGCATGGTTCCTGATGGT +
Preference number: 3 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSDGFPF*SMVPDG
Trigger: ACCATCAGGAACCATGCTCAAAAAAGGAAAGCCATC...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR TCA 72 bp ACCACCAATGGCTCCACATTTATTAATTTGGAACTGTaGGATTCGCCTTTTCTCATCCAAACAGGTAGTCCT +
Preference number: 3 (lower is better)
Translates to: TTNGSTFINLEL*DSPFLIQTGSP
Trigger: AGGACTACCTGTTTGGATGAGAAAAGGCGAATCTCACAGTTCCAAATTAATAAATGTGGAGCCATTGGTGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR TCA 72 bp TTGCATTTGAGCCCCTACATCTACCATTACTCATTGTaGACTTTTCTGTCTTCTCCCAAGAATGCTTCGTCT +
Preference number: 3 (lower is better)
Translates to: LHLSPYIYHYSL*TFLSSPKNASS
Trigger: AGACGAAGCATTCTTGGGAGAAGACAGAAAAGTTCACAATGAGTAATGGTAGATGTAGGGGCTCAAATGCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACGGTTCACGTCTGGATTaGTGTTTTTGTACATGCGGG +
Preference number: 3 (lower is better)
Translates to: QILEHLESVIHNKTTASNGSRLD*CFCTCG
Trigger: CCCGCATGTACAAAAACACAAATCCAGACGTGAACC...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTGGCTTTCTCCTAGTCTaGTTTCCATTTTGTCATCCT +
Preference number: 3 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSGFLLV*FPFCHP
Trigger: AGGATGACAAAATGGAAACAAGACTAGGAGAAAGCC...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CCA 72 bp AATACCTCTCACACCTTACACTTGGCTGTTACATTTTaGACTCCAATCTGTCGAATGACTAAAGCAGAATCT +
Preference number: 3 (lower is better)
Translates to: NTSHTLHLAVTF*TPICRMTKAES
Trigger: AGATTCTGCTTTAGTCATTCGACAGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACTTAGCACTCAATGGGTaGGAAAAGCATTGGTTCCAA +
Preference number: 3 (lower is better)
Translates to: QILEHLESVIHNKTTASNLALNG*EKHWFQ
Trigger: TTGGAACCAATGCTTTTCCAACCCATTGAGTGCTAA...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CCA 72 bp AAGTCTGTTTTCCTACAACCTCCACCCATCAGATCTTaGAGCATTTGGAATCAGTCATACATAACAAAACAA +
Preference number: 3 (lower is better)
Translates to: KSVFLQPPPIRS*SIWNQSYITKQ
Trigger: TTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTGATGGGTGGAGGTTGTAGGAAAACAGACTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR-3UTR CAA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACAGTCTTGTTTCCATTTaGTCATCCTCAGAAGGATTG +
Preference number: 3 (lower is better)
Translates to: QILEHLESVIHNKTTASNSLVSI*SSSEGL
Trigger: CAATCCTTCTGAGGATGACAAAATGGAAACAAGACT...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR TCA 72 bp ATCTGTCGAATGACTAAAGCAGAATCTTTTTGCATTTaGGCCCCTACATCTACCATTACTCATTGTGAACTT +
Preference number: 3 (lower is better)
Translates to: ICRMTKAESFCI*APTSTITHCEL
Trigger: AAGTTCACAATGAGTAATGGTAGATGTAGGGGCTCAAATGCAAAAAGATTCTGCTTTAGTCATTCGACAGAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp GCTCCAGAGGCTGTTGGGGCAGGCCTGTGCAACGGAGGCAGGTTGGGAGTGCTAGTGATGTGGGAGCTGTaGGTGGTGTCCGGGGGCGGC +
Preference number: 4 (lower is better)
Translates to: APEAVGAGLCNGGRLGVLVMWEL*VVSGGG
Trigger: GCCGCCCCCGGACACCACCCACAGCTCCCACATCAC...TAGCACTCCCAACCTGCCTCCGTTGCACAGGCCTGCCCCAACAGCCTCTGGAGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp GCTCCAGAGGCTGTTGGGGCAGGCCTGTGCAACGGAGGCAGGTTGGGAGTGCTATGTGGGAGCTGTGGGTaGTGTCCGGGGGCGGCACTT +
Preference number: 4 (lower is better)
Translates to: APEAVGAGLCNGGRLGVLCGSCG*CPGAAL
Trigger: AAGTGCCGCCCCCGGACACCACCCACAGCTCCCACA...TAGCACTCCCAACCTGCCTCCGTTGCACAGGCCTGCCCCAACAGCCTCTGGAGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp AGTCCTCTCTGGGAGGCCCAGAGCCAGTTGGTGCTCTGTCCTTGCTGGCCCTCATGTGGGAGCTGTGGGTaGTGTCCGGGGGCGGCACTT +
Preference number: 4 (lower is better)
Translates to: SPLWEAQSQLVLCPCWPSCGSCG*CPGAAL
Trigger: AAGTGCCGCCCCCGGACACCACCCACAGCTCCCACA...TGAGGGCCAGCAAGGACAGAGCACCAACTGGCTCTGGGCCTCCCAGAGAGGACT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp GCTCCAGAGGCTGTTGGGGCAGGCCTGTGCAACGGAGGCAGGTTGGGAGTGCTAAGTGGCCCCGCATCCTaGTCCCCATTCCAGGACCCA +
Preference number: 4 (lower is better)
Translates to: APEAVGAGLCNGGRLGVLSGPAS*SPFQDP
Trigger: TGGGTCCTGGAATGGGGACCAGGATGCGGGGCCACT...TAGCACTCCCAACCTGCCTCCGTTGCACAGGCCTGCCCCAACAGCCTCTGGAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp GCTCCAGAGGCTGTTGGGGCAGGCCTGTGCAACGGAGGCAGGTTGGGAGTGCTAGTTCTCAACCAGGAGTaGCCCCGCATCCTGGTCCCC +
Preference number: 4 (lower is better)
Translates to: APEAVGAGLCNGGRLGVLVLNQE*PRILVP
Trigger: GGGGACCAGGATGCGGGGCCACTCCTGGTTGAGAAC...TAGCACTCCCAACCTGCCTCCGTTGCACAGGCCTGCCCCAACAGCCTCTGGAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CAGGGCCCCAGGAGTGTCTGTGGTCGGGCTCAAGGAGCTGGTTCCAGCTGCTGTGGGGTACCGGCTTGTTaGGATCCCCGGTCTTGGCAA +
Preference number: 4 (lower is better)
Translates to: QGPRSVCGRAQGAGSSCCGVPAC*DPRSWQ
Trigger: TTGCCAAGACCGGGGATCCCAACAAGCCGGTACCCC...ACAGCAGCTGGAACCAGCTCCTTGAGCCCGACCACAGACACTCCTGGGGCCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp AGTCCTCTCTGGGAGGCCCAGAGCCAGTTGGTGCTCTGTCCTTGCTGGCCCTCAGGCCTACGGGTGATGTaGGAGCTGTGGGTGGTGTCC +
Preference number: 4 (lower is better)
Translates to: SPLWEAQSQLVLCPCWPSGLRVM*ELWVVS
Trigger: GGACACCACCCACAGCTCCCACATCACCCGTAGGCC...TGAGGGCCAGCAAGGACAGAGCACCAACTGGCTCTGGGCCTCCCAGAGAGGACT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR TCA 90 bp CAGGGCCCCAGGAGTGTCTGTGGTCGGGCTCAAGGAGCTGGTTCCAGCTGCTGTACCATGCGGGCTTCATaGGGCTCTGGCAGTGATGGT +
Preference number: 4 (lower is better)
Translates to: QGPRSVCGRAQGAGSSCCTMRAS*GSGSDG
Trigger: ACCATCACTGCCAGAGCCTCATGAAGCCCGCATGGT...ACAGCAGCTGGAACCAGCTCCTTGAGCCCGACCACAGACACTCCTGGGGCCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR TCA 90 bp CAGGGCCCCAGGAGTGTCTGTGGTCGGGCTCAAGGAGCTGGTTCCAGCTGCTGTATTGCTGTAGGCAGGTaGAATCGCCGGCCGCTTGGT +
Preference number: 4 (lower is better)
Translates to: QGPRSVCGRAQGAGSSCCIAVGR*NRRPLG
Trigger: ACCAAGCGGCCGGCGATTTCACCTGCCTACAGCAAT...ACAGCAGCTGGAACCAGCTCCTTGAGCCCGACCACAGACACTCCTGGGGCCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR TCA 90 bp CAGGGCCCCAGGAGTGTCTGTGGTCGGGCTCAAGGAGCTGGTTCCAGCTGCTGTGCAGCCCAGTACTGTTaGACCCTGCGGCAAAGGTGT +
Preference number: 4 (lower is better)
Translates to: QGPRSVCGRAQGAGSSCCAAQYC*TLRQRC
Trigger: ACACCTTTGCCGCAGGGTTCAACAGTACTGGGCTGC...ACAGCAGCTGGAACCAGCTCCTTGAGCCCGACCACAGACACTCCTGGGGCCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR GCA 90 bp CAGAGCGTCCTGATCTTGGAGCCCTCCCTTCCAGAGCTGCTTAGCACTCAATGGCTTTGGGGGCTAGGCTaGCTCAGGGGCTCCTGGCGC +
Preference number: 4 (lower is better)
Translates to: QSVLILEPSLPELLSTQWLWGLG*LRGSWR
Trigger: GCGCCAGGAGCCCCTGAGGCAGCCTAGCCCCCAAAG...CCATTGAGTGCTAAGCAGCTCTGGAAGGGAGGGCTCCAAGATCAGGACGCTCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CAGGGCCCCAGGAGTGTCTGTGGTCGGGCTCAAGGAGCTGGTTCCAGCTGCTGTCCGGGGGCGGCACTTTaGTGGTCGTGGATGTATAGT +
Preference number: 4 (lower is better)
Translates to: QGPRSVCGRAQGAGSSCCPGAAL*WSWMYS
Trigger: ACTATACATCCACGACCACCAAAGTGCCGCCCCCGG...ACAGCAGCTGGAACCAGCTCCTTGAGCCCGACCACAGACACTCCTGGGGCCCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp GCTCCAGAGGCTGTTGGGGCAGGCCTGTGCAACGGAGGCAGGTTGGGAGTGCTACCGGGGGCGGCACTTTaGTGGTCGTGGATGTATAGT +
Preference number: 4 (lower is better)
Translates to: APEAVGAGLCNGGRLGVLPGAAL*WSWMYS
Trigger: ACTATACATCCACGACCACCAAAGTGCCGCCCCCGG...TAGCACTCCCAACCTGCCTCCGTTGCACAGGCCTGCCCCAACAGCCTCTGGAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR TCA 90 bp AGTCCTCTCTGGGAGGCCCAGAGCCAGTTGGTGCTCTGTCCTTGCTGGCCCTCAATTGCTGTAGGCAGGTaGAATCGCCGGCCGCTTGGT +
Preference number: 4 (lower is better)
Translates to: SPLWEAQSQLVLCPCWPSIAVGR*NRRPLG
Trigger: ACCAAGCGGCCGGCGATTTCACCTGCCTACAGCAAT...TGAGGGCCAGCAAGGACAGAGCACCAACTGGCTCTGGGCCTCCCAGAGAGGACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR TCA 90 bp AGTCCTCTCTGGGAGGCCCAGAGCCAGTTGGTGCTCTGTCCTTGCTGGCCCTCAGCAGCCCAGTACTGTTaGACCCTGCGGCAAAGGTGT +
Preference number: 4 (lower is better)
Translates to: SPLWEAQSQLVLCPCWPSAAQYC*TLRQRC
Trigger: ACACCTTTGCCGCAGGGTTCAACAGTACTGGGCTGC...TGAGGGCCAGCAAGGACAGAGCACCAACTGGCTCTGGGCCTCCCAGAGAGGACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR GCA 90 bp CAGAGCGTCCTGATCTTGGAGCCCTCCCTTCCAGAGCTGCTTAGCACTCAATGGTCGCCGGCCGCTTGGTaGTCCAGGTCTTGCCGTTGG +
Preference number: 4 (lower is better)
Translates to: QSVLILEPSLPELLSTQWSPAAW*SRSCRW
Trigger: CCAACGGCAAGACCTGGAGCACCAAGCGGCCGGCGA...CCATTGAGTGCTAAGCAGCTCTGGAAGGGAGGGCTCCAAGATCAGGACGCTCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CAGAGCGTCCTGATCTTGGAGCCCTCCCTTCCAGAGCTGCTTAGCACTCAATGGGATGCCCGACCAGGATaGGGGTGGTTCAGGGGGCAG +
Preference number: 4 (lower is better)
Translates to: QSVLILEPSLPELLSTQWDARPG*GWFRGQ
Trigger: CTGCCCCCTGAACCACCCCCATCCTGGTCGGGCATC...CCATTGAGTGCTAAGCAGCTCTGGAAGGGAGGGCTCCAAGATCAGGACGCTCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065858.3
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp GGCCCTCAAGCCCCATCCATTGCTAGCCTCTTCCTCCTCTTACCCCATAGTCTTGTGATGTGGGAGCTGTaGGTGGTGTCCGGGGGCGGC +
Preference number: 4 (lower is better)
Translates to: GPQAPSIASLFLLLPHSLVMWEL*VVSGGG
Trigger: GCCGCCCCCGGACACCACCCACAGCTCCCACATCAC...AAGACTATGGGGTAAGAGGAGGAAGAGGCTAGCAATGGATGGGGCTTGAGGGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR GCA 90 bp AGTCCTCTCTGGGAGGCCCAGAGCCAGTTGGTGCTCTGTCCTTGCTGGCCCTCACAGCCTGATCTCCAGTaGTCAGGAAACCTAGCACCC +
Preference number: 4 (lower is better)
Translates to: SPLWEAQSQLVLCPCWPSQPDLQ*SGNLAP
Trigger: GGGTGCTAGGTTTCCTGAGCACTGGAGATCAGGCTG...TGAGGGCCAGCAAGGACAGAGCACCAACTGGCTCTGGGCCTCCCAGAGAGGACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR GCA 90 bp GGCCCTCAAGCCCCATCCATTGCTAGCCTCTTCCTCCTCTTACCCCATAGTCTTTCGCCGGCCGCTTGGTaGTCCAGGTCTTGCCGTTGG +
Preference number: 4 (lower is better)
Translates to: GPQAPSIASLFLLLPHSLSPAAW*SRSCRW
Trigger: CCAACGGCAAGACCTGGAGCACCAAGCGGCCGGCGA...AAGACTATGGGGTAAGAGGAGGAAGAGGCTAGCAATGGATGGGGCTTGAGGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp GCTCCAGAGGCTGTTGGGGCAGGCCTGTGCAACGGAGGCAGGTTGGGAGTGCTATGCAGGTTGTACAGGTaGGGCACCAGGTGTTTCCAA +
Preference number: 4 (lower is better)
Translates to: APEAVGAGLCNGGRLGVLCRLYR*GTRCFQ
Trigger: TTGGAAACACCTGGTGCCCCACCTGTACAACCTGCA...TAGCACTCCCAACCTGCCTCCGTTGCACAGGCCTGCCCCAACAGCCTCTGGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR TCA 90 bp CAGAGCGTCCTGATCTTGGAGCCCTCCCTTCCAGAGCTGCTTAGCACTCAATGGACGGGTAGTGGAGTGTaGGTGGGGCAGCCCAGTACT +
Preference number: 4 (lower is better)
Translates to: QSVLILEPSLPELLSTQWTGSGV*VGQPST
Trigger: AGTACTGGGCTGCCCCACTCACACTCCACTACCCGT...CCATTGAGTGCTAAGCAGCTCTGGAAGGGAGGGCTCCAAGATCAGGACGCTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCGTGGGTGCCGGGGCCTaGGTACTGGCCCTCAGCACC +
Preference number: 4 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPVGAGA*VLALST
Trigger: GGTGCTGAGGGCCAGTACCCAGGCCCCGGCACCCAC...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065858.3
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp AGTCCTCTCTGGGAGGCCCAGAGCCAGTTGGTGCTCTGTCCTTGCTGGCCCTCAGACCCAGGATTTCACTaGGCAATGGTACTCTGGCAC +
Preference number: 4 (lower is better)
Translates to: SPLWEAQSQLVLCPCWPSDPGFH*AMVLWH
Trigger: GTGCCAGAGTACCATTGCCCAGTGAAATCCTGGGTC...TGAGGGCCAGCAAGGACAGAGCACCAACTGGCTCTGGGCCTCCCAGAGAGGACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065858.3
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp GCTCCAGAGGCTGTTGGGGCAGGCCTGTGCAACGGAGGCAGGTTGGGAGTGCTATTGAGACCCTCACCCTaGTTGACGCCTAGCATGATA +
Preference number: 4 (lower is better)
Translates to: APEAVGAGLCNGGRLGVLLRPSP*LTPSMI
Trigger: TATCATGCTAGGCGTCAACCAGGGTGAGGGTCTCAA...TAGCACTCCCAACCTGCCTCCGTTGCACAGGCCTGCCCCAACAGCCTCTGGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp GGCCCTCAAGCCCCATCCATTGCTAGCCTCTTCCTCCTCTTACCCCATAGTCTTGTTCTCAACCAGGAGTaGCCCCGCATCCTGGTCCCC +
Preference number: 4 (lower is better)
Translates to: GPQAPSIASLFLLLPHSLVLNQE*PRILVP
Trigger: GGGGACCAGGATGCGGGGCCACTCCTGGTTGAGAAC...AAGACTATGGGGTAAGAGGAGGAAGAGGCTAGCAATGGATGGGGCTTGAGGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR TCA 90 bp GGCCCTCAAGCCCCATCCATTGCTAGCCTCTTCCTCCTCTTACCCCATAGTCTTATCGGCTGTCACCACTaGAGGCTCCACCCACTGGTG +
Preference number: 4 (lower is better)
Translates to: GPQAPSIASLFLLLPHSLIGCHH*RLHPLV
Trigger: CACCAGTGGGTGGAGCCTTCAGTGGTGACAGCCGAT...AAGACTATGGGGTAAGAGGAGGAAGAGGCTAGCAATGGATGGGGCTTGAGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR TCA 90 bp GGCCCTCAAGCCCCATCCATTGCTAGCCTCTTCCTCCTCTTACCCCATAGTCTTACGGGTAGTGGAGTGTaGGTGGGGCAGCCCAGTACT +
Preference number: 4 (lower is better)
Translates to: GPQAPSIASLFLLLPHSLTGSGV*VGQPST
Trigger: AGTACTGGGCTGCCCCACTCACACTCCACTACCCGT...AAGACTATGGGGTAAGAGGAGGAAGAGGCTAGCAATGGATGGGGCTTGAGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR GCA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCCTTTGGGGGCTAGGCTaGCTCAGGGGCTCCTGGCGC +
Preference number: 4 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPLWGLG*LRGSWR
Trigger: GCGCCAGGAGCCCCTGAGGCAGCCTAGCCCCCAAAG...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CAGAGCGTCCTGATCTTGGAGCCCTCCCTTCCAGAGCTGCTTAGCACTCAATGGTCGGGCACAGCTGTGTaGATGTTCTGGGGGCACACT +
Preference number: 4 (lower is better)
Translates to: QSVLILEPSLPELLSTQWSGTAV*MFWGHT
Trigger: AGTGTGCCCCCAGAACATCCACACAGCTGTGCCCGA...CCATTGAGTGCTAAGCAGCTCTGGAAGGGAGGGCTCCAAGATCAGGACGCTCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065858.3
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CAGAGCGTCCTGATCTTGGAGCCCTCCCTTCCAGAGCTGCTTAGCACTCAATGGGGCAGTGAACCAGACTaGCAGCATGACTTCGGGCAC +
Preference number: 4 (lower is better)
Translates to: QSVLILEPSLPELLSTQWGSEPD*QHDFGH
Trigger: GTGCCCGAAGTCATGCTGCCAGTCTGGTTCACTGCC...CCATTGAGTGCTAAGCAGCTCTGGAAGGGAGGGCTCCAAGATCAGGACGCTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065858.3
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp GCTCCAGAGGCTGTTGGGGCAGGCCTGTGCAACGGAGGCAGGTTGGGAGTGCTATGTCTGCCAGCAAGCTaGTATACTTCACTGGTTGGT +
Preference number: 4 (lower is better)
Translates to: APEAVGAGLCNGGRLGVLCLPAS*YTSLVG
Trigger: ACCAACCAGTGAAGTATACCAGCTTGCTGGCAGACA...TAGCACTCCCAACCTGCCTCCGTTGCACAGGCCTGCCCCAACAGCCTCTGGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp GGCCCTCAAGCCCCATCCATTGCTAGCCTCTTCCTCCTCTTACCCCATAGTCTTGGGGTACCGGCTTGTTaGGATCCCCGGTCTTGGCAA +
Preference number: 4 (lower is better)
Translates to: GPQAPSIASLFLLLPHSLGVPAC*DPRSWQ
Trigger: TTGCCAAGACCGGGGATCCCAACAAGCCGGTACCCC...AAGACTATGGGGTAAGAGGAGGAAGAGGCTAGCAATGGATGGGGCTTGAGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp GGCCCTCAAGCCCCATCCATTGCTAGCCTCTTCCTCCTCTTACCCCATAGTCTTAAATCGCCGGCCGCTTaGTGCTCCAGGTCTTGCCGT +
Preference number: 4 (lower is better)
Translates to: GPQAPSIASLFLLLPHSLKSPAA*CSRSCR
Trigger: ACGGCAAGACCTGGAGCACCAAGCGGCCGGCGATTT...AAGACTATGGGGTAAGAGGAGGAAGAGGCTAGCAATGGATGGGGCTTGAGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CAA 72 bp GGAGCTCATCTAGCGCACATAAGGCTTTCGGGTCCATaGCCAGCACTGTCGCATCTGCACATGGGGGTGCAC +
Preference number: 4 (lower is better)
Translates to: GAHLAHIRLSGP*PALSHLHMGVH
Trigger: GTGCACCCCCATGTGCAGATGCGACAGTGCTGGCAATGGACCCGAAAGCCTTATGTGCGCTAGATGAGCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR GCA 90 bp CAGTCATACATAACAAAACAACAGCTTCAAACCAGCCCTCGGGAAGCAGAGGCCGCCGATCGGGGGAGCTaGGTAGGGTACCCCCAGGTA +
Preference number: 4 (lower is better)
Translates to: QSYITKQQLQTSPREAEAADRGS*VGYPQV
Trigger: TACCTGGGGGTACCCTACGCAGCTCCCCCGATCGGC...GGCCTCTGCTTCCCGAGGGCTGGTTTGAAGCTGTTGTTTTGTTATGTATGACTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000065858.3
ENSMUST00000151528.8
CDS-3UTR GCA 90 bp AGTCCTCTCTGGGAGGCCCAGAGCCAGTTGGTGCTCTGTCCTTGCTGGCCCTCAACAGCCCACTTTGTCTaGCAGCAAGCTGGTATACTT +
Preference number: 4 (lower is better)
Translates to: SPLWEAQSQLVLCPCWPSTAHFV*QQAGIL
Trigger: AAGTATACCAGCTTGCTGGCAGACAAAGTGGGCTGT...TGAGGGCCAGCAAGGACAGAGCACCAACTGGCTCTGGGCCTCCCAGAGAGGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CGTATGTGTCCCCATTTGAAGGGCCTATTCAGGTTCACGTCTGGATTTGTGTTTGTGGGTGCCGGGGCCTaGGTACTGGCCCTCAGCACC +
Preference number: 4 (lower is better)
Translates to: RMCPHLKGLFRFTSGFVFVGAGA*VLALST
Trigger: GGTGCTGAGGGCCAGTACCCAGGCCCCGGCACCCAC...AAACACAAATCCAGACGTGAACCTGAATAGGCCCTTCAAATGGGGACACATACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065858.3
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp AGTCCTCTCTGGGAGGCCCAGAGCCAGTTGGTGCTCTGTCCTTGCTGGCCCTCAGCTCCTGGATATAAGTaGCGACGATATCCAAGTTGG +
Preference number: 4 (lower is better)
Translates to: SPLWEAQSQLVLCPCWPSAPGYK*RRYPSW
Trigger: CCAACTTGGATATCGTCGCCACTTATATCCAGGAGC...TGAGGGCCAGCAAGGACAGAGCACCAACTGGCTCTGGGCCTCCCAGAGAGGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp AGTCCTCTCTGGGAGGCCCAGAGCCAGTTGGTGCTCTGTCCTTGCTGGCCCTCAGCTGGTATACTTCACTaGTTGGTAGTTCACAGCCCA +
Preference number: 4 (lower is better)
Translates to: SPLWEAQSQLVLCPCWPSAGILH*LVVHSP
Trigger: TGGGCTGTGAACTACCAACCAGTGAAGTATACCAGC...TGAGGGCCAGCAAGGACAGAGCACCAACTGGCTCTGGGCCTCCCAGAGAGGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp AGTCCTCTCTGGGAGGCCCAGAGCCAGTTGGTGCTCTGTCCTTGCTGGCCCTCAATGATCACGAACCCTTaGTTTCAGCCCGATGTGAAG +
Preference number: 4 (lower is better)
Translates to: SPLWEAQSQLVLCPCWPSMITNP*FQPDVK
Trigger: CTTCACATCGGGCTGAAACCAAGGGTTCGTGATCAT...TGAGGGCCAGCAAGGACAGAGCACCAACTGGCTCTGGGCCTCCCAGAGAGGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CAGAGCGTCCTGATCTTGGAGCCCTCCCTTCCAGAGCTGCTTAGCACTCAATGGGGGGCGGCACTTTGGTaGTCGTGGATGTATAGTGGA +
Preference number: 4 (lower is better)
Translates to: QSVLILEPSLPELLSTQWGAALW*SWMYSG
Trigger: TCCACTATACATCCACGACCACCAAAGTGCCGCCCC...CCATTGAGTGCTAAGCAGCTCTGGAAGGGAGGGCTCCAAGATCAGGACGCTCTG
57% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR GCA 90 bp GGCCCTCAAGCCCCATCCATTGCTAGCCTCTTCCTCCTCTTACCCCATAGTCTTCAGCCTGATCTCCAGTaGTCAGGAAACCTAGCACCC +
Preference number: 4 (lower is better)
Translates to: GPQAPSIASLFLLLPHSLQPDLQ*SGNLAP
Trigger: GGGTGCTAGGTTTCCTGAGCACTGGAGATCAGGCTG...AAGACTATGGGGTAAGAGGAGGAAGAGGCTAGCAATGGATGGGGCTTGAGGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp AGTCCTCTCTGGGAGGCCCAGAGCCAGTTGGTGCTCTGTCCTTGCTGGCCCTCAAAAAGGCTACCTTTGTaGCCCGGTAATGATCACGAA +
Preference number: 4 (lower is better)
Translates to: SPLWEAQSQLVLCPCWPSKRLPL*PGNDHE
Trigger: TTCGTGATCATTACCGGGCCACAAAGGTAGCCTTTT...TGAGGGCCAGCAAGGACAGAGCACCAACTGGCTCTGGGCCTCCCAGAGAGGACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp TTGTACATCATCCTGCCTTGTGATGGCTCATCTCCTTCATTTTGTCAGGGTCACGTGATGTGGGAGCTGTaGGTGGTGTCCGGGGGCGGC +
Preference number: 4 (lower is better)
Translates to: LYIILPCDGSSPSFCQGHVMWEL*VVSGGG
Trigger: GCCGCCCCCGGACACCACCCACAGCTCCCACATCAC...GTGACCCTGACAAAATGAAGGAGATGAGCCATCACAAGGCAGGATGATGTACAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CAGGGCCCCAGGAGTGTCTGTGGTCGGGCTCAAGGAGCTGGTTCCAGCTGCTGTGCTTTACATCTTCCGTaGGCACATACACATTCAGAT +
Preference number: 4 (lower is better)
Translates to: QGPRSVCGRAQGAGSSCCALHLP*AHTHSD
Trigger: ATCTGAATGTGTATGTGCCCACGGAAGATGTAAAGC...ACAGCAGCTGGAACCAGCTCCTTGAGCCCGACCACAGACACTCCTGGGGCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151528.8
CDS-3UTR TCA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCCCCGTGTGCTGCATCTaGCCATGCGGGCTTCATGAG +
Preference number: 4 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPPVCCI*PCGLHE
Trigger: CTCATGAAGCCCGCATGGTCAGATGCAGCACACGGG...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
54% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR TCA 90 bp TCTCCATCAAAGAGGGTGAGGTGGCTCTGTACAGTGACGACGAATCTTTATTTCCGTTGGGCCTACGGGTaGTGTGGGAGCTGTGGGTGG +
Preference number: 4 (lower is better)
Translates to: SPSKRVRWLCTVTTNLYFRWAYG*CGSCGW
Trigger: CCACCCACAGCTCCCACATCACCCGTAGGCCCAACG...GAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR TCA 90 bp TTGTACATCATCCTGCCTTGTGATGGCTCATCTCCTTCATTTTGTCAGGGTCACCGTTGGGCCTACGGGTaGTGTGGGAGCTGTGGGTGG +
Preference number: 4 (lower is better)
Translates to: LYIILPCDGSSPSFCQGHRWAYG*CGSCGW
Trigger: CCACCCACAGCTCCCACATCACCCGTAGGCCCAACG...GTGACCCTGACAAAATGAAGGAGATGAGCCATCACAAGGCAGGATGATGTACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR GCA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCAGTATTGACTGTGGGTaGCGGGGCCTGGGTACTGGC +
Preference number: 4 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPSIDCG*RGLGTG
Trigger: GCCAGTACCCAGGCCCCGGCACCCACAGTCAATACT...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065858.3
ENSMUST00000151528.8
CDS-3UTR GCA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGCTTTGGGGGCTAGGCTaGCTCAGGGGCTCCTGGCGC +
Preference number: 4 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGLWGLG*LRGSWR
Trigger: GCGCCAGGAGCCCCTGAGGCAGCCTAGCCCCCAAAG...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGGGCCAACTGTGGGCGTaGGGCTCAGGGACAGCGAGG +
Preference number: 4 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGGQLWA*GSGTAR
Trigger: CCTCGCTGTCCCTGAGCCCCACGCCCACAGTTGGCC...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065858.3
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp TCTCCATCAAAGAGGGTGAGGTGGCTCTGTACAGTGACGACGAATCTTTATTTCGATGCCCGACCAGGATaGGGGTGGTTCAGGGGGCAG +
Preference number: 4 (lower is better)
Translates to: SPSKRVRWLCTVTTNLYFDARPG*GWFRGQ
Trigger: CTGCCCCCTGAACCACCCCCATCCTGGTCGGGCATC...GAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065858.3
ENSMUST00000151528.8
CDS-3UTR TCA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCACCATGCGGGCTTCATaGGGCTCTGGCAGTGATGGT +
Preference number: 4 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPTMRAS*GSGSDG
Trigger: ACCATCACTGCCAGAGCCTCATGAAGCCCGCATGGT...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp TTGTACATCATCCTGCCTTGTGATGGCTCATCTCCTTCATTTTGTCAGGGTCACCTGGGGGAAAGTGTGTaGCGTTCCGGATGCCCGACC +
Preference number: 4 (lower is better)
Translates to: LYIILPCDGSSPSFCQGHLGESV*RSGCPT
Trigger: GGTCGGGCATCCGGAACGCCACACACTTTCCCCCAG...GTGACCCTGACAAAATGAAGGAGATGAGCCATCACAAGGCAGGATGATGTACAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065858.3
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CAGAGCGTCCTGATCTTGGAGCCCTCCCTTCCAGAGCTGCTTAGCACTCAATGGAGAGGCAATCTTCGTTaGGCTCCTGGATATAAGTGG +
Preference number: 4 (lower is better)
Translates to: QSVLILEPSLPELLSTQWRGNLR*APGYKW
Trigger: CCACTTATATCCAGGAGCCCAACGAAGATTGCCTCT...CCATTGAGTGCTAAGCAGCTCTGGAAGGGAGGGCTCCAAGATCAGGACGCTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp GGCCCTCAAGCCCCATCCATTGCTAGCCTCTTCCTCCTCTTACCCCATAGTCTTAGAGCAGAGCCACTTTaGATGATGGCCCTCTGGAAA +
Preference number: 4 (lower is better)
Translates to: GPQAPSIASLFLLLPHSLRAEPL*MMALWK
Trigger: TTTCCAGAGGGCCATCATCCAAAGTGGCTCTGCTCT...AAGACTATGGGGTAAGAGGAGGAAGAGGCTAGCAATGGATGGGGCTTGAGGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp TTGTACATCATCCTGCCTTGTGATGGCTCATCTCCTTCATTTTGTCAGGGTCACGGCCTACGGGTGATGTaGGAGCTGTGGGTGGTGTCC +
Preference number: 4 (lower is better)
Translates to: LYIILPCDGSSPSFCQGHGLRVM*ELWVVS
Trigger: GGACACCACCCACAGCTCCCACATCACCCGTAGGCC...GTGACCCTGACAAAATGAAGGAGATGAGCCATCACAAGGCAGGATGATGTACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp TCTCCATCAAAGAGGGTGAGGTGGCTCTGTACAGTGACGACGAATCTTTATTTCGTTCTCAACCAGGAGTaGCCCCGCATCCTGGTCCCC +
Preference number: 4 (lower is better)
Translates to: SPSKRVRWLCTVTTNLYFVLNQE*PRILVP
Trigger: GGGGACCAGGATGCGGGGCCACTCCTGGTTGAGAAC...GAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp TCTCCATCAAAGAGGGTGAGGTGGCTCTGTACAGTGACGACGAATCTTTATTTCTGCCTCAGGGGCTCCTaGCGCCGTTTGTCCTTACGG +
Preference number: 4 (lower is better)
Translates to: SPSKRVRWLCTVTTNLYFCLRGS*RRLSLR
Trigger: CCGTAAGGACAAACGGCGCCAGGAGCCCCTGAGGCA...GAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CGTATGTGTCCCCATTTGAAGGGCCTATTCAGGTTCACGTCTGGATTTGTGTTTTGCCTCAGGGGCTCCTaGCGCCGTTTGTCCTTACGG +
Preference number: 4 (lower is better)
Translates to: RMCPHLKGLFRFTSGFVFCLRGS*RRLSLR
Trigger: CCGTAAGGACAAACGGCGCCAGGAGCCCCTGAGGCA...AAACACAAATCCAGACGTGAACCTGAATAGGCCCTTCAAATGGGGACACATACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CAGTCATACATAACAAAACAACAGCTTCAAACCAGCCCTCGGGAAGCAGAGGCCGCGAAGTGTGTCATGTaGGGGACCGGCCTCACATTC +
Preference number: 4 (lower is better)
Translates to: QSYITKQQLQTSPREAEAAKCVM*GTGLTF
Trigger: GAATGTGAGGCCGGTCCCCCACATGACACACTTCGC...GGCCTCTGCTTCCCGAGGGCTGGTTTGAAGCTGTTGTTTTGTTATGTATGACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CAA 72 bp GAGCTATCCTGCTCTTTAAAGCTCCCGAGTCTGCAGTaGGTAGAGGTGCAGTTCCGAGAAGGCAAGCACCAA +
Preference number: 4 (lower is better)
Translates to: ELSCSLKLPSLQ*VEVQFREGKHQ
Trigger: TTGGTGCTTGCCTTCTCGGAACTGCACCTCTACCAACTGCAGACTCGGGAGCTTTAAAGAGCAGGATAGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR TCA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCCAGAGCCACTTTGGATaGTGGCCCTCTGGAAAAGCC +
Preference number: 4 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPQSHFG*WPSGKA
Trigger: GGCTTTTCCAGAGGGCCATCATCCAAAGTGGCTCTG...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR GCA 90 bp GGCCCTCAAGCCCCATCCATTGCTAGCCTCTTCCTCCTCTTACCCCATAGTCTTACAGCCCACTTTGTCTaGCAGCAAGCTGGTATACTT +
Preference number: 4 (lower is better)
Translates to: GPQAPSIASLFLLLPHSLTAHFV*QQAGIL
Trigger: AAGTATACCAGCTTGCTGGCAGACAAAGTGGGCTGT...AAGACTATGGGGTAAGAGGAGGAAGAGGCTAGCAATGGATGGGGCTTGAGGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CAGTCATACATAACAAAACAACAGCTTCAAACCAGCCCTCGGGAAGCAGAGGCCGGTACCCCCAGGTATTaGTCCACAGGACCCAGGATT +
Preference number: 4 (lower is better)
Translates to: QSYITKQQLQTSPREAEAGTPRY*STGPRI
Trigger: AATCCTGGGTCCTGTGGACCAATACCTGGGGGTACC...GGCCTCTGCTTCCCGAGGGCTGGTTTGAAGCTGTTGTTTTGTTATGTATGACTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065858.3
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCGGTACCCCCAGGTATTaGTCCACAGGACCCAGGATT +
Preference number: 4 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPGTPRY*STGPRI
Trigger: AATCCTGGGTCCTGTGGACCAATACCTGGGGGTACC...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065858.3
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGCTGGGGGAAAGTGTGTaGCGTTCCGGATGCCCGACC +
Preference number: 4 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGLGESV*RSGCPT
Trigger: GGTCGGGCATCCGGAACGCCACACACTTTCCCCCAG...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065858.3
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp TCTCCATCAAAGAGGGTGAGGTGGCTCTGTACAGTGACGACGAATCTTTATTTCGGGGTACCGGCTTGTTaGGATCCCCGGTCTTGGCAA +
Preference number: 4 (lower is better)
Translates to: SPSKRVRWLCTVTTNLYFGVPAC*DPRSWQ
Trigger: TTGCCAAGACCGGGGATCCCAACAAGCCGGTACCCC...GAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CAGAGCGTCCTGATCTTGGAGCCCTCCCTTCCAGAGCTGCTTAGCACTCAATGGGCACTTTGGTGGTCGTaGATGTATAGTGGAACATGT +
Preference number: 4 (lower is better)
Translates to: QSVLILEPSLPELLSTQWALWWS*MYSGTC
Trigger: ACATGTTCCACTATACATCCACGACCACCAAAGTGC...CCATTGAGTGCTAAGCAGCTCTGGAAGGGAGGGCTCCAAGATCAGGACGCTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp TTGTACATCATCCTGCCTTGTGATGGCTCATCTCCTTCATTTTGTCAGGGTCACAAATCGCCGGCCGCTTaGTGCTCCAGGTCTTGCCGT +
Preference number: 4 (lower is better)
Translates to: LYIILPCDGSSPSFCQGHKSPAA*CSRSCR
Trigger: ACGGCAAGACCTGGAGCACCAAGCGGCCGGCGATTT...GTGACCCTGACAAAATGAAGGAGATGAGCCATCACAAGGCAGGATGATGTACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGAGTGGCCCCGCATCCTaGTCCCCATTCCAGGACCCA +
Preference number: 4 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGSGPAS*SPFQDP
Trigger: TGGGTCCTGGAATGGGGACCAGGATGCGGGGCCACT...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCAGTGGCCCCGCATCCTaGTCCCCATTCCAGGACCCA +
Preference number: 4 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFSGPAS*SPFQDP
Trigger: TGGGTCCTGGAATGGGGACCAGGATGCGGGGCCACT...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CAGAGCGTCCTGATCTTGGAGCCCTCCCTTCCAGAGCTGCTTAGCACTCAATGGTTCGGGCGCATTCCTTaGAAATCCGCTTTACATCTT +
Preference number: 4 (lower is better)
Translates to: QSVLILEPSLPELLSTQWFGRIP*KSALHL
Trigger: AAGATGTAAAGCGGATTTCCAAGGAATGCGCCCGAA...CCATTGAGTGCTAAGCAGCTCTGGAAGGGAGGGCTCCAAGATCAGGACGCTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151528.8
CDS-3UTR TCA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCATCGGCTGTCACCACTaGAGGCTCCACCCACTGGTG +
Preference number: 4 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFIGCHH*RLHPLV
Trigger: CACCAGTGGGTGGAGCCTTCAGTGGTGACAGCCGAT...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR TCA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCCCCGTGTGCTGCATCTaGCCATGCGGGCTTCATGAG +
Preference number: 4 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFPVCCI*PCGLHE
Trigger: CTCATGAAGCCCGCATGGTCAGATGCAGCACACGGG...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR TCA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGACGGGTAGTGGAGTGTaGGTGGGGCAGCCCAGTACT +
Preference number: 4 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGTGSGV*VGQPST
Trigger: AGTACTGGGCTGCCCCACTCACACTCCACTACCCGT...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR GCA 90 bp GGCCCTCAAGCCCCATCCATTGCTAGCCTCTTCCTCCTCTTACCCCATAGTCTTGACGTTGCCGTAACTTaGAAGAACACTGCCATCAAT +
Preference number: 4 (lower is better)
Translates to: GPQAPSIASLFLLLPHSLDVAVT*KNTAIN
Trigger: ATTGATGGCAGTGTTCTTGCAAGTTACGGCAACGTC...AAGACTATGGGGTAAGAGGAGGAAGAGGCTAGCAATGGATGGGGCTTGAGGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR GCA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTTCGCCGGCCGCTTGGTaGTCCAGGTCTTGCCGTTGG +
Preference number: 4 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSSPAAW*SRSCRW
Trigger: CCAACGGCAAGACCTGGAGCACCAAGCGGCCGGCGA...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCGACCCAGGATTTCACTaGGCAATGGTACTCTGGCAC +
Preference number: 4 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPDPGFH*AMVLWH
Trigger: GTGCCAGAGTACCATTGCCCAGTGAAATCCTGGGTC...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065858.3
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp TCTCCATCAAAGAGGGTGAGGTGGCTCTGTACAGTGACGACGAATCTTTATTTCGTTCTGGGGGCACACTaGGGGAAAGTGTGTGGCGTT +
Preference number: 4 (lower is better)
Translates to: SPSKRVRWLCTVTTNLYFVLGAH*GKVCGV
Trigger: AACGCCACACACTTTCCCCCAGTGTGCCCCCAGAAC...GAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065858.3
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CGTATGTGTCCCCATTTGAAGGGCCTATTCAGGTTCACGTCTGGATTTGTGTTTGTTCTGGGGGCACACTaGGGGAAAGTGTGTGGCGTT +
Preference number: 4 (lower is better)
Translates to: RMCPHLKGLFRFTSGFVFVLGAH*GKVCGV
Trigger: AACGCCACACACTTTCCCCCAGTGTGCCCCCAGAAC...AAACACAAATCCAGACGTGAACCTGAATAGGCCCTTCAAATGGGGACACATACG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000065858.3
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp TCTCCATCAAAGAGGGTGAGGTGGCTCTGTACAGTGACGACGAATCTTTATTTCGCTGTGTGGATGTTCTaGGGGCACACTGGGGGAAAG +
Preference number: 4 (lower is better)
Translates to: SPSKRVRWLCTVTTNLYFAVWMF*GHTGGK
Trigger: CTTTCCCCCAGTGTGCCCCCAGAACATCCACACAGC...GAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065858.3
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp TCTCCATCAAAGAGGGTGAGGTGGCTCTGTACAGTGACGACGAATCTTTATTTCGGCAGTGAACCAGACTaGCAGCATGACTTCGGGCAC +
Preference number: 4 (lower is better)
Translates to: SPSKRVRWLCTVTTNLYFGSEPD*QHDFGH
Trigger: GTGCCCGAAGTCATGCTGCCAGTCTGGTTCACTGCC...GAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065858.3
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp TTGTACATCATCCTGCCTTGTGATGGCTCATCTCCTTCATTTTGTCAGGGTCACGAAGGCTCCACCCACTaGTGGTCAGTGAAGAGTGCC +
Preference number: 4 (lower is better)
Translates to: LYIILPCDGSSPSFCQGHEGSTH*WSVKSA
Trigger: GGCACTCTTCACTGACCACCAGTGGGTGGAGCCTTC...GTGACCCTGACAAAATGAAGGAGATGAGCCATCACAAGGCAGGATGATGTACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CAA 72 bp CCATTGCTAGCCTCTTCCTCCTCTTACCCCATAGTCTaGTGCCCATCTGTCACTGTCTTGGAAGGTCCTTCT +
Preference number: 4 (lower is better)
Translates to: PLLASSSSYPIV*CPSVTVLEGPS
Trigger: AGAAGGACCTTCCAAGACAGTGACAGATGGGCACAAGACTATGGGGTAAGAGGAGGAAGAGGCTAGCAATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CAA 72 bp AGCACCCTATTCGTATACCCTATGAACACAAATGATTaGTGCGACGTGAGCTCAGGGCCCCTGCTCCGAAGT +
Preference number: 4 (lower is better)
Translates to: STLFVYPMNTND*CDVSSGPLLRS
Trigger: ACTTCGGAGCAGGGGCCCTGAGCTCACGTCGCACAAATCATTTGTGTTCATAGGGTATACGAATAGGGTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR TCA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCGTAGAAGTAGGTAGGTaGGCCATAGCGGGCGTGCAG +
Preference number: 4 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFVEVGR*AIAGVQ
Trigger: CTGCACGCCCGCTATGGCTCACCTACCTACTTCTAC...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR TCA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGACCATGCGGGCTTCATaGGGCTCTGGCAGTGATGGT +
Preference number: 4 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGTMRAS*GSGSDG
Trigger: ACCATCACTGCCAGAGCCTCATGAAGCCCGCATGGT...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR TCA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCATTGCTGTAGGCAGGTaGAATCGCCGGCCGCTTGGT +
Preference number: 4 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFIAVGR*NRRPLG
Trigger: ACCAAGCGGCCGGCGATTTCACCTGCCTACAGCAAT...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR GCA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCAGGGTTGTCTCGGTCTaGCCAGTCCGTATACATGAA +
Preference number: 4 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPRVVSV*PVRIHE
Trigger: TTCATGTATACGGACTGGGCAGACCGAGACAACCCT...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACGGCCAACTGTGGGCGTaGGGCTCAGGGACAGCGAGG +
Preference number: 4 (lower is better)
Translates to: QILEHLESVIHNKTTASNGQLWA*GSGTAR
Trigger: CCTCGCTGTCCCTGAGCCCCACGCCCACAGTTGGCC...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065858.3
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCGCTGTGTGGATGTTCTaGGGGCACACTGGGGGAAAG +
Preference number: 4 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFAVWMF*GHTGGK
Trigger: CTTTCCCCCAGTGTGCCCCCAGAACATCCACACAGC...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065858.3
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCTCGGGCACAGCTGTGTaGATGTTCTGGGGGCACACT +
Preference number: 4 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFSGTAV*MFWGHT
Trigger: AGTGTGCCCCCAGAACATCCACACAGCTGTGCCCGA...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065858.3
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CAGTCATACATAACAAAACAACAGCTTCAAACCAGCCCTCGGGAAGCAGAGGCCTTGAGACCCTCACCCTaGTTGACGCCTAGCATGATA +
Preference number: 4 (lower is better)
Translates to: QSYITKQQLQTSPREAEALRPSP*LTPSMI
Trigger: TATCATGCTAGGCGTCAACCAGGGTGAGGGTCTCAA...GGCCTCTGCTTCCCGAGGGCTGGTTTGAAGCTGTTGTTTTGTTATGTATGACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCGAAGGCTCCACCCACTaGTGGTCAGTGAAGAGTGCC +
Preference number: 4 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFEGSTH*WSVKSA
Trigger: GGCACTCTTCACTGACCACCAGTGGGTGGAGCCTTC...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CGTATGTGTCCCCATTTGAAGGGCCTATTCAGGTTCACGTCTGGATTTGTGTTTGGGGCGGCACTTTGGTaGTCGTGGATGTATAGTGGA +
Preference number: 4 (lower is better)
Translates to: RMCPHLKGLFRFTSGFVFGAALW*SWMYSG
Trigger: TCCACTATACATCCACGACCACCAAAGTGCCGCCCC...AAACACAAATCCAGACGTGAACCTGAATAGGCCCTTCAAATGGGGACACATACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGCCGGGGGCGGCACTTTaGTGGTCGTGGATGTATAGT +
Preference number: 4 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGPGAAL*WSWMYS
Trigger: ACTATACATCCACGACCACCAAAGTGCCGCCCCCGG...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTTGCCTCAGGGGCTCCTaGCGCCGTTTGTCCTTACGG +
Preference number: 4 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSCLRGS*RRLSLR
Trigger: CCGTAAGGACAAACGGCGCCAGGAGCCCCTGAGGCA...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGGCGAAGTGTGTCATGTaGGGGACCGGCCTCACATTC +
Preference number: 4 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGAKCVM*GTGLTF
Trigger: GAATGTGAGGCCGGTCCCCCACATGACACACTTCGC...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCGCGAAGTGTGTCATGTaGGGGACCGGCCTCACATTC +
Preference number: 4 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFAKCVM*GTGLTF
Trigger: GAATGTGAGGCCGGTCCCCCACATGACACACTTCGC...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp TTGTACATCATCCTGCCTTGTGATGGCTCATCTCCTTCATTTTGTCAGGGTCACGTTGGGAGTCATGAGTaGGATGTCATCAGGGGAGCG +
Preference number: 4 (lower is better)
Translates to: LYIILPCDGSSPSFCQGHVGSHE*DVIRGA
Trigger: CGCTCCCCTGATGACATCCCACTCATGACTCCCAAC...GTGACCCTGACAAAATGAAGGAGATGAGCCATCACAAGGCAGGATGATGTACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CAA 72 bp TTCCCTCTCCCGGTCCCTCTGGTAACTGTCTCTGTGTaGGTTCAGCCATTACCTGTTCTGGTTTCATGTATG +
Preference number: 4 (lower is better)
Translates to: FPLPVPLVTVSV*VQPLPVLVSCM
Trigger: CATACATGAAACCAGAACAGGTAATGGCTGAACCAACACAGAGACAGTTACCAGAGGGACCGGGAGAGGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CAA 72 bp CCTCAGAGGGTGAAGGACACAGCACAGTCATTTCATTaGGCAGCTACTGGTGGGAGTTTTCAGGGTAGTCAA +
Preference number: 4 (lower is better)
Translates to: PQRVKDTAQSFH*AATGGSFQGSQ
Trigger: TTGACTACCCTGAAAACTCCCACCAGTAGCTGCCAAATGAAATGACTGTGCTGTGTCCTTCACCCTCTGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR TCA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGCAGAGCCACTTTGGATaGTGGCCCTCTGGAAAAGCC +
Preference number: 4 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGQSHFG*WPSGKA
Trigger: GGCTTTTCCAGAGGGCCATCATCCAAAGTGGCTCTG...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR GCA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTAGTATTGACTGTGGGTaGCGGGGCCTGGGTACTGGC +
Preference number: 4 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSSIDCG*RGLGTG
Trigger: GCCAGTACCCAGGCCCCGGCACCCACAGTCAATACT...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065858.3
ENSMUST00000151528.8
CDS-3UTR GCA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACGCCGATCGGGGGAGCTaGGTAGGGTACCCCCAGGTA +
Preference number: 4 (lower is better)
Translates to: QILEHLESVIHNKTTASNADRGS*VGYPQV
Trigger: TACCTGGGGGTACCCTACGCAGCTCCCCCGATCGGC...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000065858.3
ENSMUST00000151528.8
CDS-3UTR GCA 90 bp TTGTACATCATCCTGCCTTGTGATGGCTCATCTCCTTCATTTTGTCAGGGTCACAGTAGTCAAAGTCAGTaGCCGAGACACCATCCTCGG +
Preference number: 4 (lower is better)
Translates to: LYIILPCDGSSPSFCQGHSSQSQ*PRHHPR
Trigger: CCGAGGATGGTGTCTCGGGCACTGACTTTGACTACT...GTGACCCTGACAAAATGAAGGAGATGAGCCATCACAAGGCAGGATGATGTACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR GCA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCAGTACTGTTGAACCCTaGGGCAAAGGTGTTATAGGG +
Preference number: 4 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPSTVEP*GKGVIG
Trigger: CCCTATAACACCTTTGCCGCAGGGTTCAACAGTACT...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CAGTCATACATAACAAAACAACAGCTTCAAACCAGCCCTCGGGAAGCAGAGGCCAGAGGCAATCTTCGTTaGGCTCCTGGATATAAGTGG +
Preference number: 4 (lower is better)
Translates to: QSYITKQQLQTSPREAEARGNLR*APGYKW
Trigger: CCACTTATATCCAGGAGCCCAACGAAGATTGCCTCT...GGCCTCTGCTTCCCGAGGGCTGGTTTGAAGCTGTTGTTTTGTTATGTATGACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CGTATGTGTCCCCATTTGAAGGGCCTATTCAGGTTCACGTCTGGATTTGTGTTTCACATGGTAGCGGGCTaGCTGAATGTCCTGTTCTAC +
Preference number: 4 (lower is better)
Translates to: RMCPHLKGLFRFTSGFVFHMVAG*LNVLFY
Trigger: GTAGAACAGGACATTCAGCCAGCCCGCTACCATGTG...AAACACAAATCCAGACGTGAACCTGAATAGGCCCTTCAAATGGGGACACATACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp TCTCCATCAAAGAGGGTGAGGTGGCTCTGTACAGTGACGACGAATCTTTATTTCCACATGGTAGCGGGCTaGCTGAATGTCCTGTTCTAC +
Preference number: 4 (lower is better)
Translates to: SPSKRVRWLCTVTTNLYFHMVAG*LNVLFY
Trigger: GTAGAACAGGACATTCAGCCAGCCCGCTACCATGTG...GAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CAGTCATACATAACAAAACAACAGCTTCAAACCAGCCCTCGGGAAGCAGAGGCCATGATCACGAACCCTTaGTTTCAGCCCGATGTGAAG +
Preference number: 4 (lower is better)
Translates to: QSYITKQQLQTSPREAEAMITNP*FQPDVK
Trigger: CTTCACATCGGGCTGAAACCAAGGGTTCGTGATCAT...GGCCTCTGCTTCCCGAGGGCTGGTTTGAAGCTGTTGTTTTGTTATGTATGACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp TCTCCATCAAAGAGGGTGAGGTGGCTCTGTACAGTGACGACGAATCTTTATTTCTGCAGGTTGTACAGGTaGGGCACCAGGTGTTTCCAA +
Preference number: 4 (lower is better)
Translates to: SPSKRVRWLCTVTTNLYFCRLYR*GTRCFQ
Trigger: TTGGAAACACCTGGTGCCCCACCTGTACAACCTGCA...GAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACTGTGGGAGCTGTGGGTaGTGTCCGGGGGCGGCACTT +
Preference number: 4 (lower is better)
Translates to: QILEHLESVIHNKTTASNCGSCG*CPGAAL
Trigger: AAGTGCCGCCCCCGGACACCACCCACAGCTCCCACA...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp AGGGCCCAAAGCTATTCTCCAAAGCTATTCTCCAATCATGAAATCATTCAACATGGCCTACGGGTGATGTaGGAGCTGTGGGTGGTGTCC +
Preference number: 4 (lower is better)
Translates to: RAQSYSPKLFSNHEIIQHGLRVM*ELWVVS
Trigger: GGACACCACCCACAGCTCCCACATCACCCGTAGGCC...ATGTTGAATGATTTCATGATTGGAGAATAGCTTTGGAGAATAGCTTTGGGCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTAAATCGCCGGCCGCTTaGTGCTCCAGGTCTTGCCGT +
Preference number: 4 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSKSPAA*CSRSCR
Trigger: ACGGCAAGACCTGGAGCACCAAGCGGCCGGCGATTT...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR TCA 90 bp AGGGCCCAAAGCTATTCTCCAAAGCTATTCTCCAATCATGAAATCATTCAACATCCCGTGTGCTGCATCTaGCCATGCGGGCTTCATGAG +
Preference number: 4 (lower is better)
Translates to: RAQSYSPKLFSNHEIIQHPVCCI*PCGLHE
Trigger: CTCATGAAGCCCGCATGGTCAGATGCAGCACACGGG...ATGTTGAATGATTTCATGATTGGAGAATAGCTTTGGAGAATAGCTTTGGGCCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR TCA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTGCAGCCCAGTACTGTTaGACCCTGCGGCAAAGGTGT +
Preference number: 4 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSAAQYC*TLRQRC
Trigger: ACACCTTTGCCGCAGGGTTCAACAGTACTGGGCTGC...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR GCA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCAGTAGTCAAAGTCAGTaGCCGAGACACCATCCTCGG +
Preference number: 4 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFSSQSQ*PRHHPR
Trigger: CCGAGGATGGTGTCTCGGGCACTGACTTTGACTACT...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR GCA 90 bp TCTCCATCAAAGAGGGTGAGGTGGCTCTGTACAGTGACGACGAATCTTTATTTCAGGGTTGTCTCGGTCTaGCCAGTCCGTATACATGAA +
Preference number: 4 (lower is better)
Translates to: SPSKRVRWLCTVTTNLYFRVVSV*PVRIHE
Trigger: TTCATGTATACGGACTGGGCAGACCGAGACAACCCT...GAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR GCA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCGTGGTCAGTGAAGAGTaGCACCAGTGTTTTACGGCG +
Preference number: 4 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFVVSEE*HQCFTA
Trigger: CGCCGTAAAACACTGGTGGCACTCTTCACTGACCAC...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCTGGGCAATGGTACTCTaGCACCCCTTAGCTTCCCAA +
Preference number: 4 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFWAMVL*HPLASQ
Trigger: TTGGGAAGCTAAGGGGTGCCAGAGTACCATTGCCCA...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065858.3
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp TCTCCATCAAAGAGGGTGAGGTGGCTCTGTACAGTGACGACGAATCTTTATTTCAGAGCAGAGCCACTTTaGATGATGGCCCTCTGGAAA +
Preference number: 4 (lower is better)
Translates to: SPSKRVRWLCTVTTNLYFRAEPL*MMALWK
Trigger: TTTCCAGAGGGCCATCATCCAAAGTGGCTCTGCTCT...GAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CGTATGTGTCCCCATTTGAAGGGCCTATTCAGGTTCACGTCTGGATTTGTGTTTAGAGCAGAGCCACTTTaGATGATGGCCCTCTGGAAA +
Preference number: 4 (lower is better)
Translates to: RMCPHLKGLFRFTSGFVFRAEPL*MMALWK
Trigger: TTTCCAGAGGGCCATCATCCAAAGTGGCTCTGCTCT...AAACACAAATCCAGACGTGAACCTGAATAGGCCCTTCAAATGGGGACACATACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CAGTCATACATAACAAAACAACAGCTTCAAACCAGCCCTCGGGAAGCAGAGGCCGCACTTTGGTGGTCGTaGATGTATAGTGGAACATGT +
Preference number: 4 (lower is better)
Translates to: QSYITKQQLQTSPREAEAALWWS*MYSGTC
Trigger: ACATGTTCCACTATACATCCACGACCACCAAAGTGC...GGCCTCTGCTTCCCGAGGGCTGGTTTGAAGCTGTTGTTTTGTTATGTATGACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR TCA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTCAGAGCCACTTTGGATaGTGGCCCTCTGGAAAAGCC +
Preference number: 4 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSQSHFG*WPSGKA
Trigger: GGCTTTTCCAGAGGGCCATCATCCAAAGTGGCTCTG...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR GCA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTCAGCCTGATCTCCAGTaGTCAGGAAACCTAGCACCC +
Preference number: 4 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSQPDLQ*SGNLAP
Trigger: GGGTGCTAGGTTTCCTGAGCACTGGAGATCAGGCTG...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR GCA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCAGGGTTGTCTCGGTCTaGCCAGTCCGTATACATGAA +
Preference number: 4 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFRVVSV*PVRIHE
Trigger: TTCATGTATACGGACTGGGCAGACCGAGACAACCCT...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR GCA 90 bp CGTATGTGTCCCCATTTGAAGGGCCTATTCAGGTTCACGTCTGGATTTGTGTTTAGTACTGTTGAACCCTaGGGCAAAGGTGTTATAGGG +
Preference number: 4 (lower is better)
Translates to: RMCPHLKGLFRFTSGFVFSTVEP*GKGVIG
Trigger: CCCTATAACACCTTTGCCGCAGGGTTCAACAGTACT...AAACACAAATCCAGACGTGAACCTGAATAGGCCCTTCAAATGGGGACACATACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CGTATGTGTCCCCATTTGAAGGGCCTATTCAGGTTCACGTCTGGATTTGTGTTTGCTCCTGGATATAAGTaGCGACGATATCCAAGTTGG +
Preference number: 4 (lower is better)
Translates to: RMCPHLKGLFRFTSGFVFAPGYK*RRYPSW
Trigger: CCAACTTGGATATCGTCGCCACTTATATCCAGGAGC...AAACACAAATCCAGACGTGAACCTGAATAGGCCCTTCAAATGGGGACACATACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp TCTCCATCAAAGAGGGTGAGGTGGCTCTGTACAGTGACGACGAATCTTTATTTCAGAGGCAATCTTCGTTaGGCTCCTGGATATAAGTGG +
Preference number: 4 (lower is better)
Translates to: SPSKRVRWLCTVTTNLYFRGNLR*APGYKW
Trigger: CCACTTATATCCAGGAGCCCAACGAAGATTGCCTCT...GAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp TTGTACATCATCCTGCCTTGTGATGGCTCATCTCCTTCATTTTGTCAGGGTCACTGTCTGCCAGCAAGCTaGTATACTTCACTGGTTGGT +
Preference number: 4 (lower is better)
Translates to: LYIILPCDGSSPSFCQGHCLPAS*YTSLVG
Trigger: ACCAACCAGTGAAGTATACCAGCTTGCTGGCAGACA...GTGACCCTGACAAAATGAAGGAGATGAGCCATCACAAGGCAGGATGATGTACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CGTATGTGTCCCCATTTGAAGGGCCTATTCAGGTTCACGTCTGGATTTGTGTTTGTTCTACCAGCTCCTTaGCACTCTTTTGTCGAAGAC +
Preference number: 4 (lower is better)
Translates to: RMCPHLKGLFRFTSGFVFVLPAP*HSFVED
Trigger: GTCTTCGACAAAAGAGTGCCAAGGAGCTGGTAGAAC...AAACACAAATCCAGACGTGAACCTGAATAGGCCCTTCAAATGGGGACACATACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CGTATGTGTCCCCATTTGAAGGGCCTATTCAGGTTCACGTCTGGATTTGTGTTTATGATCACGAACCCTTaGTTTCAGCCCGATGTGAAG +
Preference number: 4 (lower is better)
Translates to: RMCPHLKGLFRFTSGFVFMITNP*FQPDVK
Trigger: CTTCACATCGGGCTGAAACCAAGGGTTCGTGATCAT...AAACACAAATCCAGACGTGAACCTGAATAGGCCCTTCAAATGGGGACACATACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCTACAAATTTTCTTGTTaGGCTTTCGGGCGCATTCCT +
Preference number: 4 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPYKFSC*AFGRIP
Trigger: AGGAATGCGCCCGAAAGCCCAACAAGAAAATTTGTA...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151528.8
3UTR CAA 72 bp TCTTACCCCATAGTCTTGTGCCCATCTGTCACTGTCTaGGAAGGTCCTTCTCCTTGGTCTGATTGTATGAAC +
Preference number: 4 (lower is better)
Translates to: SYPIVLCPSVTV*EGPSPWSDCMN
Trigger: GTTCATACAATCAGACCAAGGAGAAGGACCTTCCAAGACAGTGACAGATGGGCACAAGACTATGGGGTAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR TCA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACGTAGAAGTAGGTAGGTaGGCCATAGCGGGCGTGCAG +
Preference number: 4 (lower is better)
Translates to: QILEHLESVIHNKTTASNVEVGR*AIAGVQ
Trigger: CTGCACGCCCGCTATGGCTCACCTACCTACTTCTAC...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR GCA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTGTGGTCAGTGAAGAGTaGCACCAGTGTTTTACGGCG +
Preference number: 4 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSVVSEE*HQCFTA
Trigger: CGCCGTAAAACACTGGTGGCACTCTTCACTGACCAC...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCCGGATCCATCTTCCGTaGGCACATACACATTCAGAT +
Preference number: 4 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFRIHLP*AHTHSD
Trigger: ATCTGAATGTGTATGTGCCCACGGAAGATGGATCCG...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
CDS-3UTR CCA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGGCTGGTATACTTCACTaGTTGGTAGTTCACAGCCCA +
Preference number: 4 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGAGILH*LVVHSP
Trigger: TGGGCTGTGAACTACCAACCAGTGAAGTATACCAGC...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGTGTCTGCCAGCAAGCTaGTATACTTCACTGGTTGGT +
Preference number: 4 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGCLPAS*YTSLVG
Trigger: ACCAACCAGTGAAGTATACCAGCTTGCTGGCAGACA...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGGTTCTACCAGCTCCTTaGCACTCTTTTGTCGAAGAC +
Preference number: 4 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGVLPAP*HSFVED
Trigger: GTCTTCGACAAAAGAGTGCCAAGGAGCTGGTAGAAC...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTCACATGGTAGCGGGCTaGCTGAATGTCCTGTTCTAC +
Preference number: 4 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSHMVAG*LNVLFY
Trigger: GTAGAACAGGACATTCAGCCAGCCCGCTACCATGTG...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CGTATGTGTCCCCATTTGAAGGGCCTATTCAGGTTCACGTCTGGATTTGTGTTTAAAAGGCTACCTTTGTaGCCCGGTAATGATCACGAA +
Preference number: 4 (lower is better)
Translates to: RMCPHLKGLFRFTSGFVFKRLPL*PGNDHE
Trigger: TTCGTGATCATTACCGGGCCACAAAGGTAGCCTTTT...AAACACAAATCCAGACGTGAACCTGAATAGGCCCTTCAAATGGGGACACATACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp TCTCCATCAAAGAGGGTGAGGTGGCTCTGTACAGTGACGACGAATCTTTATTTCGCACTTTGGTGGTCGTaGATGTATAGTGGAACATGT +
Preference number: 4 (lower is better)
Translates to: SPSKRVRWLCTVTTNLYFALWWS*MYSGTC
Trigger: ACATGTTCCACTATACATCCACGACCACCAAAGTGC...GAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp AGGGCCCAAAGCTATTCTCCAAAGCTATTCTCCAATCATGAAATCATTCAACATGGGGCGGCACTTTGGTaGTCGTGGATGTATAGTGGA +
Preference number: 4 (lower is better)
Translates to: RAQSYSPKLFSNHEIIQHGAALW*SWMYSG
Trigger: TCCACTATACATCCACGACCACCAAAGTGCCGCCCC...ATGTTGAATGATTTCATGATTGGAGAATAGCTTTGGAGAATAGCTTTGGGCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp AGGGCCCAAAGCTATTCTCCAAAGCTATTCTCCAATCATGAAATCATTCAACATGTTGGGAGTCATGAGTaGGATGTCATCAGGGGAGCG +
Preference number: 4 (lower is better)
Translates to: RAQSYSPKLFSNHEIIQHVGSHE*DVIRGA
Trigger: CGCTCCCCTGATGACATCCCACTCATGACTCCCAAC...ATGTTGAATGATTTCATGATTGGAGAATAGCTTTGGAGAATAGCTTTGGGCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CAA 72 bp TCAATCTTTGTATACAGTACCTTGCACTGGTCCCCTTaGTACATCATCCTGCCTTGTGATGGCTCATCTCCT +
Preference number: 4 (lower is better)
Translates to: SIFVYSTLHWSP*YIILPCDGSSP
Trigger: AGGAGATGAGCCATCACAAGGCAGGATGATGTACAAAGGGGACCAGTGCAAGGTACTGTATACAAAGATTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CAA 72 bp AGCACTCAGGCAGATCTCTATATGTTCAAGACCAGTTaGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACT +
Preference number: 4 (lower is better)
Translates to: STQADLYMFKTS*VYLASFRTART
Trigger: AGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTGGTCTTGAACATATAGAGATCTGCCTGAGTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR GCA 90 bp AGGGCCCAAAGCTATTCTCCAAAGCTATTCTCCAATCATGAAATCATTCAACATGTGGTCAGTGAAGAGTaGCACCAGTGTTTTACGGCG +
Preference number: 4 (lower is better)
Translates to: RAQSYSPKLFSNHEIIQHVVSEE*HQCFTA
Trigger: CGCCGTAAAACACTGGTGGCACTCTTCACTGACCAC...ATGTTGAATGATTTCATGATTGGAGAATAGCTTTGGAGAATAGCTTTGGGCCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACGTTGGGAGTCATGAGTaGGATGTCATCAGGGGAGCG +
Preference number: 4 (lower is better)
Translates to: QILEHLESVIHNKTTASNVGSHE*DVIRGA
Trigger: CGCTCCCCTGATGACATCCCACTCATGACTCCCAAC...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CAA 72 bp GTGATGGCTCATCTCCTTCATTTTGTCAGGGTCACTTaGAAGAATTCTATTCCTGGCTTCCGAGTATCAGCA +
Preference number: 4 (lower is better)
Translates to: VMAHLLHFVRVT*KNSIPGFRVSA
Trigger: TGCTGATACTCGGAAGCCAGGAATAGAATTCTTCAAAGTGACCCTGACAAAATGAAGGAGATGAGCCATCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CAA 72 bp CCTAGTCTTGTTTCCATTTTGTCATCCTCAGAAGGATaGCAGCACACAGACCATGAAAGAACACAGCTTGGT +
Preference number: 4 (lower is better)
Translates to: PSLVSILSSSEG*QHTDHERTQLG
Trigger: ACCAAGCTGTGTTCTTTCATGGTCTGTGTGCTGCAATCCTTCTGAGGATGACAAAATGGAAACAAGACTAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR GCA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTACAGCCCACTTTGTCTaGCAGCAAGCTGGTATACTT +
Preference number: 4 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSTAHFV*QQAGIL
Trigger: AAGTATACCAGCTTGCTGGCAGACAAAGTGGGCTGT...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR GCA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACAGTAGTCAAAGTCAGTaGCCGAGACACCATCCTCGG +
Preference number: 4 (lower is better)
Translates to: QILEHLESVIHNKTTASNSSQSQ*PRHHPR
Trigger: CCGAGGATGGTGTCTCGGGCACTGACTTTGACTACT...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTGCTCCTGGATATAAGTaGCGACGATATCCAAGTTGG +
Preference number: 4 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSAPGYK*RRYPSW
Trigger: CCAACTTGGATATCGTCGCCACTTATATCCAGGAGC...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTGCTGGTATACTTCACTaGTTGGTAGTTCACAGCCCA +
Preference number: 4 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSAGILH*LVVHSP
Trigger: TGGGCTGTGAACTACCAACCAGTGAAGTATACCAGC...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CCA 90 bp AGGGCCCAAAGCTATTCTCCAAAGCTATTCTCCAATCATGAAATCATTCAACATGTTCTACCAGCTCCTTaGCACTCTTTTGTCGAAGAC +
Preference number: 4 (lower is better)
Translates to: RAQSYSPKLFSNHEIIQHVLPAP*HSFVED
Trigger: GTCTTCGACAAAAGAGTGCCAAGGAGCTGGTAGAAC...ATGTTGAATGATTTCATGATTGGAGAATAGCTTTGGAGAATAGCTTTGGGCCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CAA 72 bp TTTCCTACAACCTCCACCCATCAGATCTTGGAGCATTaGGAATCAGTCATACATAACAAAACAACAGCTTCA +
Preference number: 4 (lower is better)
Translates to: FPTTSTHQILEH*ESVIHNKTTAS
Trigger: TGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTGATGGGTGGAGGTTGTAGGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CAA 72 bp CAAGTCTGTTTTCCTACAACCTCCACCCATCAGATCTaGGAGCATTTGGAATCAGTCATACATAACAAAACA +
Preference number: 4 (lower is better)
Translates to: QVCFPTTSTHQI*EHLESVIHNKT
Trigger: TGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTGATGGGTGGAGGTTGTAGGAAAACAGACTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
3UTR CAA 72 bp TATACTCTTAAGAACAATACCTCTCACACCTTACACTaGGCTGTTACATTTTGGACTCCAATCTGTCGAATG +
Preference number: 4 (lower is better)
Translates to: YTLKNNTSHTLH*AVTFWTPICRM
Trigger: CATTCGACAGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCTTAAGAGTATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS TCA 90 bp TCGCCGGCCGCTTGGTGCTCCAGGTCTTGCCGTTGGGCCTACGGGTaGTGTGGGAGCTGTGGGTGGTGTCCGGGGGCGGCACTTTGGTGG +
Preference number: 5 (lower is better)
Translates to: SPAAWCSRSCRWAYG*CGSCGWCPGAALWW
Trigger: CCACCAAAGTGCCGCCCCCGGACACCACCCACAGCTCCCACATCACCCGTAGGCCCAACGGCAAGACCTGGAGCACCAAGCGGCCGGCGA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS CCA 90 bp GGCCGCTTGGTGCTCCAGGTCTTGCCGTTGGGCCTACGGGTGATGTaGGAGCTGTGGGTGGTGTCCGGGGGCGGCACTTTGGTGGTCGTG +
Preference number: 5 (lower is better)
Translates to: GRLVLQVLPLGLRVM*ELWVVSGGGTLVVV
Trigger: CACGACCACCAAAGTGCCGCCCCCGGACACCACCCACAGCTCCCACATCACCCGTAGGCCCAACGGCAAGACCTGGAGCACCAAGCGGCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp AGTCCTCTCTGGGAGGCCCAGAGCCAGTTGGTGCTCTGTCCTTGCTGGCCCTCATTGGTGCTCCAGGTCTaGCCGTTGGGCCTACGGGTG +
Preference number: 5 (lower is better)
Translates to: SPLWEAQSQLVLCPCWPSLVLQV*PLGLRV
Trigger: CACCCGTAGGCCCAACGGCAAGACCTGGAGCACCAA...TGAGGGCCAGCAAGGACAGAGCACCAACTGGCTCTGGGCCTCCCAGAGAGGACT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp CAGGGCCCCAGGAGTGTCTGTGGTCGGGCTCAAGGAGCTGGTTCCAGCTGCTGTGGCAGCCCAGTACTGTaGAACCCTGCGGCAAAGGTG +
Preference number: 5 (lower is better)
Translates to: QGPRSVCGRAQGAGSSCCGSPVL*NPAAKV
Trigger: CACCTTTGCCGCAGGGTTCAACAGTACTGGGCTGCC...ACAGCAGCTGGAACCAGCTCCTTGAGCCCGACCACAGACACTCCTGGGGCCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp GCTCCAGAGGCTGTTGGGGCAGGCCTGTGCAACGGAGGCAGGTTGGGAGTGCTAGGCAGCCCAGTACTGTaGAACCCTGCGGCAAAGGTG +
Preference number: 5 (lower is better)
Translates to: APEAVGAGLCNGGRLGVLGSPVL*NPAAKV
Trigger: CACCTTTGCCGCAGGGTTCAACAGTACTGGGCTGCC...TAGCACTCCCAACCTGCCTCCGTTGCACAGGCCTGCCCCAACAGCCTCTGGAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS TCA 90 bp GTCCCCATTCCAGGACCCAGGGGCATTCTCATTGCTGTAGGCAGGTaGAATCGCCGGCCGCTTGGTGCTCCAGGTCTTGCCGTTGGGCCT +
Preference number: 5 (lower is better)
Translates to: VPIPGPRGILIAVGR*NRRPLGAPGLAVGP
Trigger: AGGCCCAACGGCAAGACCTGGAGCACCAAGCGGCCGGCGATTTCACCTGCCTACAGCAATGAGAATGCCCCTGGGTCCTGGAATGGGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS TCA 90 bp CATCAGGGGAGCGCCGCAGGGTCAGGGTATAGTCGGGCAGTGCTGTaGGGCGAAGTGTGTCATGTGGGGGACCGGCCTCACATTCATGGT +
Preference number: 5 (lower is better)
Translates to: HQGSAAGSGYSRAVL*GEVCHVGDRPHIHG
Trigger: ACCATGAATGTGAGGCCGGTCCCCCACATGACACACTTCGCCTCACAGCACTGCCCGACTATACCCTGACCCTGCGGCGCTCCCCTGATG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp CAGAGCGTCCTGATCTTGGAGCCCTCCCTTCCAGAGCTGCTTAGCACTCAATGGCGGCGGGTCTCAGGGTaGTCTCGGTCTGCCCAGTCC +
Preference number: 5 (lower is better)
Translates to: QSVLILEPSLPELLSTQWRRVSG*SRSAQS
Trigger: GGACTGGGCAGACCGAGACAACCCTGAGACCCGCCG...CCATTGAGTGCTAAGCAGCTCTGGAAGGGAGGGCTCCAAGATCAGGACGCTCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp CAGGGCCCCAGGAGTGTCTGTGGTCGGGCTCAAGGAGCTGGTTCCAGCTGCTGTGCAAAGGCCAACACATaGAGAAACAGGAGGGAGGCC +
Preference number: 5 (lower is better)
Translates to: QGPRSVCGRAQGAGSSCCAKANT*RNRREA
Trigger: GGCCTCCCTCCTGTTTCTCAATGTGTTGGCCTTTGC...ACAGCAGCTGGAACCAGCTCCTTGAGCCCGACCACAGACACTCCTGGGGCCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS CCA 90 bp GGCGAAGTGTGTCATGTGGGGGACCGGCCTCACATTCATGGTGAGTaGGACCCAACTGTAATGCTGCCAGCTCCTCCTCCGGAGCAGTTC +
Preference number: 5 (lower is better)
Translates to: GEVCHVGDRPHIHGE*DPTVMLPAPPPEQF
Trigger: GAACTGCTCCGGAGGAGGAGCTGGCAGCATTACAGTTGGGTCCCACTCACCATGAATGTGAGGCCGGTCCCCCACATGACACACTTCGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp CAGGGCCCCAGGAGTGTCTGTGGTCGGGCTCAAGGAGCTGGTTCCAGCTGCTGTACGTTACAGCCCACTTaGTCTGCCAGCAAGCTGGTA +
Preference number: 5 (lower is better)
Translates to: QGPRSVCGRAQGAGSSCCTLQPT*SASKLV
Trigger: TACCAGCTTGCTGGCAGACAAAGTGGGCTGTAACGT...ACAGCAGCTGGAACCAGCTCCTTGAGCCCGACCACAGACACTCCTGGGGCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp CAGAGCGTCCTGATCTTGGAGCCCTCCCTTCCAGAGCTGCTTAGCACTCAATGGCTCCAGGTCTTGCCGTaGGGCCTACGGGTGATGTGG +
Preference number: 5 (lower is better)
Translates to: QSVLILEPSLPELLSTQWLQVLP*GLRVMW
Trigger: CCACATCACCCGTAGGCCCAACGGCAAGACCTGGAG...CCATTGAGTGCTAAGCAGCTCTGGAAGGGAGGGCTCCAAGATCAGGACGCTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp GGCCCTCAAGCCCCATCCATTGCTAGCCTCTTCCTCCTCTTACCCCATAGTCTTGAAATCGCCGGCCGCTaGGTGCTCCAGGTCTTGCCG +
Preference number: 5 (lower is better)
Translates to: GPQAPSIASLFLLLPHSLEIAGR*VLQVLP
Trigger: CGGCAAGACCTGGAGCACCAAGCGGCCGGCGATTTC...AAGACTATGGGGTAAGAGGAGGAAGAGGCTAGCAATGGATGGGGCTTGAGGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS TCA 90 bp TGGGCAATGGTACTCTGGCACCCCTTAGCTTCCCAAAGTGAGTATTaGCTGTGGGTGCCGGGGCCTGGGTACTGGCCCTCAGCACCAAAC +
Preference number: 5 (lower is better)
Translates to: WAMVLWHPLASQSEY*LWVPGPGYWPSAPN
Trigger: GTTTGGTGCTGAGGGCCAGTACCCAGGCCCCGGCACCCACAGTCAATACTCACTTTGGGAAGCTAAGGGGTGCCAGAGTACCATTGCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000130555.8
ENSMUST00000151528.8
CDS CCA 90 bp TGTGGGAGCTGTGGGTGGTGTCCGGGGGCGGCACTTTGGTGGTCGTaGATGTATAGTGGAACATGTCATGCAGGTTGTACAGGTGGGGCA +
Preference number: 5 (lower is better)
Translates to: CGSCGWCPGAALWWS*MYSGTCHAGCTGGA
Trigger: TGCCCCACCTGTACAACCTGCATGACATGTTCCACTATACATCCACGACCACCAAAGTGCCGCCCCCGGACACCACCCACAGCTCCCACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp GGCCCTCAAGCCCCATCCATTGCTAGCCTCTTCCTCCTCTTACCCCATAGTCTTTCCTGGGGTACCGGCTaGTTGGGATCCCCGGTCTTG +
Preference number: 5 (lower is better)
Translates to: GPQAPSIASLFLLLPHSLSWGTG*LGSPVL
Trigger: CAAGACCGGGGATCCCAACAAGCCGGTACCCCAGGA...AAGACTATGGGGTAAGAGGAGGAAGAGGCTAGCAATGGATGGGGCTTGAGGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp GCTCCAGAGGCTGTTGGGGCAGGCCTGTGCAACGGAGGCAGGTTGGGAGTGCTATCCAAAAGGCTACCTTaGTGGCCCGGTAATGATCAC +
Preference number: 5 (lower is better)
Translates to: APEAVGAGLCNGGRLGVLSKRLP*WPGNDH
Trigger: GTGATCATTACCGGGCCACAAAGGTAGCCTTTTGGA...TAGCACTCCCAACCTGCCTCCGTTGCACAGGCCTGCCCCAACAGCCTCTGGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS TCA 90 bp ATTTCACTGGGCAATGGTACTCTGGCACCCCTTAGCTTCCCAAAGTaGGTATTGACTGTGGGTGCCGGGGCCTGGGTACTGGCCCTCAGC +
Preference number: 5 (lower is better)
Translates to: ISLGNGTLAPLSFPK*VLTVGAGAWVLALS
Trigger: GCTGAGGGCCAGTACCCAGGCCCCGGCACCCACAGTCAATACTCACTTTGGGAAGCTAAGGGGTGCCAGAGTACCATTGCCCAGTGAAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000130555.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp GCTCCAGAGGCTGTTGGGGCAGGCCTGTGCAACGGAGGCAGGTTGGGAGTGCTACTCCTTGGCACTCTTTaGTCGAAGACAATCCACCAT +
Preference number: 5 (lower is better)
Translates to: APEAVGAGLCNGGRLGVLLLGTL*SKTIHH
Trigger: ATGGTGGATTGTCTTCGACAAAAGAGTGCCAAGGAG...TAGCACTCCCAACCTGCCTCCGTTGCACAGGCCTGCCCCAACAGCCTCTGGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp GCTCCAGAGGCTGTTGGGGCAGGCCTGTGCAACGGAGGCAGGTTGGGAGTGCTATTTCGGGCGCATTCCTaGGAAATCCGCTTTACATCT +
Preference number: 5 (lower is better)
Translates to: APEAVGAGLCNGGRLGVLFRAHS*EIRFTS
Trigger: AGATGTAAAGCGGATTTCCAAGGAATGCGCCCGAAA...TAGCACTCCCAACCTGCCTCCGTTGCACAGGCCTGCCCCAACAGCCTCTGGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp AGTCCTCTCTGGGAGGCCCAGAGCCAGTTGGTGCTCTGTCCTTGCTGGCCCTCAAATGATCACGAACCCTaGGTTTCAGCCCGATGTGAA +
Preference number: 5 (lower is better)
Translates to: SPLWEAQSQLVLCPCWPSNDHEP*VSARCE
Trigger: TTCACATCGGGCTGAAACCAAGGGTTCGTGATCATT...TGAGGGCCAGCAAGGACAGAGCACCAACTGGCTCTGGGCCTCCCAGAGAGGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp CAGTCATACATAACAAAACAACAGCTTCAAACCAGCCCTCGGGAAGCAGAGGCCTTGGTGCTCCAGGTCTaGCCGTTGGGCCTACGGGTG +
Preference number: 5 (lower is better)
Translates to: QSYITKQQLQTSPREAEALVLQV*PLGLRV
Trigger: CACCCGTAGGCCCAACGGCAAGACCTGGAGCACCAA...GGCCTCTGCTTCCCGAGGGCTGGTTTGAAGCTGTTGTTTTGTTATGTATGACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp GGCCCTCAAGCCCCATCCATTGCTAGCCTCTTCCTCCTCTTACCCCATAGTCTTGCAAAGGCCAACACATaGAGAAACAGGAGGGAGGCC +
Preference number: 5 (lower is better)
Translates to: GPQAPSIASLFLLLPHSLAKANT*RNRREA
Trigger: GGCCTCCCTCCTGTTTCTCAATGTGTTGGCCTTTGC...AAGACTATGGGGTAAGAGGAGGAAGAGGCTAGCAATGGATGGGGCTTGAGGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS CCA 90 bp CGTAGGGTACCCCCAGGTATTGGTCCACAGGACCCAGGATTTCACTaGGCAATGGTACTCTGGCACCCCTTAGCTTCCCAAAGTGAGTAT +
Preference number: 5 (lower is better)
Translates to: RRVPPGIGPQDPGFH*AMVLWHPLASQSEY
Trigger: ATACTCACTTTGGGAAGCTAAGGGGTGCCAGAGTACCATTGCCCAGTGAAATCCTGGGTCCTGTGGACCAATACCTGGGGGTACCCTACG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000130555.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCCGGCGGGTCTCAGGGTaGTCTCGGTCTGCCCAGTCC +
Preference number: 5 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFRRVSG*SRSAQS
Trigger: GGACTGGGCAGACCGAGACAACCCTGAGACCCGCCG...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp TTGTACATCATCCTGCCTTGTGATGGCTCATCTCCTTCATTTTGTCAGGGTCACGAAATCGCCGGCCGCTaGGTGCTCCAGGTCTTGCCG +
Preference number: 5 (lower is better)
Translates to: LYIILPCDGSSPSFCQGHEIAGR*VLQVLP
Trigger: CGGCAAGACCTGGAGCACCAAGCGGCCGGCGATTTC...GTGACCCTGACAAAATGAAGGAGATGAGCCATCACAAGGCAGGATGATGTACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp CAGAGCGTCCTGATCTTGGAGCCCTCCCTTCCAGAGCTGCTTAGCACTCAATGGTGTTCTACCAGCTCCTaGGCACTCTTTTGTCGAAGA +
Preference number: 5 (lower is better)
Translates to: QSVLILEPSLPELLSTQWCSTSS*ALFCRR
Trigger: TCTTCGACAAAAGAGTGCCAAGGAGCTGGTAGAACA...CCATTGAGTGCTAAGCAGCTCTGGAAGGGAGGGCTCCAAGATCAGGACGCTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp TTGTACATCATCCTGCCTTGTGATGGCTCATCTCCTTCATTTTGTCAGGGTCACCTCCAGGTCTTGCCGTaGGGCCTACGGGTGATGTGG +
Preference number: 5 (lower is better)
Translates to: LYIILPCDGSSPSFCQGHLQVLP*GLRVMW
Trigger: CCACATCACCCGTAGGCCCAACGGCAAGACCTGGAG...GTGACCCTGACAAAATGAAGGAGATGAGCCATCACAAGGCAGGATGATGTACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGGAAATCGCCGGCCGCTaGGTGCTCCAGGTCTTGCCG +
Preference number: 5 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGEIAGR*VLQVLP
Trigger: CGGCAAGACCTGGAGCACCAAGCGGCCGGCGATTTC...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS CCA 90 bp CCACATGGTAGCGGGCTGGCTGAATGTCCTGTTCTACCAGCTCCTTaGCACTCTTTTGTCGAAGACAATCCACCATATCCACAGTGTCCA +
Preference number: 5 (lower is better)
Translates to: PHGSGLAECPVLPAP*HSFVEDNPPYPQCP
Trigger: TGGACACTGTGGATATGGTGGATTGTCTTCGACAAAAGAGTGCCAAGGAGCTGGTAGAACAGGACATTCAGCCAGCCCGCTACCATGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000130555.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCACCCCTTCCACAAACTaGAGACCCTCACCCTGGTTG +
Preference number: 5 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPTPSTN*RPSPWL
Trigger: CAACCAGGGTGAGGGTCTCAAGTTTGTGGAAGGGGT...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS GCA 90 bp AAGCCCCTCAGAATGATGAGACAGTGTAAGGAGACTGACACAGGATaGACCGATGCCAGAGCCAAAGACAGTAATTCTACGGGGATCTCC +
Preference number: 5 (lower is better)
Translates to: KPLRMMRQCKETDTG*TDARAKDSNSTGIS
Trigger: GGAGATCCCCGTAGAATTACTGTCTTTGGCTCTGGCATCGGTGCATCCTGTGTCAGTCTCCTTACACTGTCTCATCATTCTGAGGGGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000130555.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCGGGTACCCCCAGGTATaGGTCCACAGGACCCAGGAT +
Preference number: 5 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFGYPQV*VHRTQD
Trigger: ATCCTGGGTCCTGTGGACCAATACCTGGGGGTACCC...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065858.3
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp AGGGCCCAAAGCTATTCTCCAAAGCTATTCTCCAATCATGAAATCATTCAACATCGGCGGGTCTCAGGGTaGTCTCGGTCTGCCCAGTCC +
Preference number: 5 (lower is better)
Translates to: RAQSYSPKLFSNHEIIQHRRVSG*SRSAQS
Trigger: GGACTGGGCAGACCGAGACAACCCTGAGACCCGCCG...ATGTTGAATGATTTCATGATTGGAGAATAGCTTTGGAGAATAGCTTTGGGCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp CAGAGCGTCCTGATCTTGGAGCCCTCCCTTCCAGAGCTGCTTAGCACTCAATGGAGCATAACATCATTCTaGGAGAAGTTGCAGGGGAAA +
Preference number: 5 (lower is better)
Translates to: QSVLILEPSLPELLSTQWSITSF*EKLQGK
Trigger: TTTCCCCTGCAACTTCTCCAAGAATGATGTTATGCT...CCATTGAGTGCTAAGCAGCTCTGGAAGGGAGGGCTCCAAGATCAGGACGCTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp CGTATGTGTCCCCATTTGAAGGGCCTATTCAGGTTCACGTCTGGATTTGTGTTTGCGACGATATCCAAGTaGGCAGTGAACCAGACTGGC +
Preference number: 5 (lower is better)
Translates to: RMCPHLKGLFRFTSGFVFATISK*AVNQTG
Trigger: GCCAGTCTGGTTCACTGCCAACTTGGATATCGTCGC...AAACACAAATCCAGACGTGAACCTGAATAGGCCCTTCAAATGGGGACACATACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp CGTATGTGTCCCCATTTGAAGGGCCTATTCAGGTTCACGTCTGGATTTGTGTTTACCCCTTCCACAAACTaGAGACCCTCACCCTGGTTG +
Preference number: 5 (lower is better)
Translates to: RMCPHLKGLFRFTSGFVFTPSTN*RPSPWL
Trigger: CAACCAGGGTGAGGGTCTCAAGTTTGTGGAAGGGGT...AAACACAAATCCAGACGTGAACCTGAATAGGCCCTTCAAATGGGGACACATACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp GGCCCTCAAGCCCCATCCATTGCTAGCCTCTTCCTCCTCTTACCCCATAGTCTTAGCATAACATCATTCTaGGAGAAGTTGCAGGGGAAA +
Preference number: 5 (lower is better)
Translates to: GPQAPSIASLFLLLPHSLSITSF*EKLQGK
Trigger: TTTCCCCTGCAACTTCTCCAAGAATGATGTTATGCT...AAGACTATGGGGTAAGAGGAGGAAGAGGCTAGCAATGGATGGGGCTTGAGGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTTCCTGGGGTACCGGCTaGTTGGGATCCCCGGTCTTG +
Preference number: 5 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSSWGTG*LGSPVL
Trigger: CAAGACCGGGGATCCCAACAAGCCGGTACCCCAGGA...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp CGTATGTGTCCCCATTTGAAGGGCCTATTCAGGTTCACGTCTGGATTTGTGTTTGCAAAGGCCAACACATaGAGAAACAGGAGGGAGGCC +
Preference number: 5 (lower is better)
Translates to: RMCPHLKGLFRFTSGFVFAKANT*RNRREA
Trigger: GGCCTCCCTCCTGTTTCTCAATGTGTTGGCCTTTGC...AAACACAAATCCAGACGTGAACCTGAATAGGCCCTTCAAATGGGGACACATACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCCTCCTTGGCACTCTTTaGTCGAAGACAATCCACCAT +
Preference number: 5 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPLLGTL*SKTIHH
Trigger: ATGGTGGATTGTCTTCGACAAAAGAGTGCCAAGGAG...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp TTGTACATCATCCTGCCTTGTGATGGCTCATCTCCTTCATTTTGTCAGGGTCACAGACCCTCACCCTGGTaGACGCCTAGCATGATATCA +
Preference number: 5 (lower is better)
Translates to: LYIILPCDGSSPSFCQGHRPSPW*TPSMIS
Trigger: TGATATCATGCTAGGCGTCAACCAGGGTGAGGGTCT...GTGACCCTGACAAAATGAAGGAGATGAGCCATCACAAGGCAGGATGATGTACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp CGTATGTGTCCCCATTTGAAGGGCCTATTCAGGTTCACGTCTGGATTTGTGTTTAGACCCTCACCCTGGTaGACGCCTAGCATGATATCA +
Preference number: 5 (lower is better)
Translates to: RMCPHLKGLFRFTSGFVFRPSPW*TPSMIS
Trigger: TGATATCATGCTAGGCGTCAACCAGGGTGAGGGTCT...AAACACAAATCCAGACGTGAACCTGAATAGGCCCTTCAAATGGGGACACATACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCACCCCTTCCACAAACTaGAGACCCTCACCCTGGTTG +
Preference number: 5 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFTPSTN*RPSPWL
Trigger: CAACCAGGGTGAGGGTCTCAAGTTTGTGGAAGGGGT...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp AGGGCCCAAAGCTATTCTCCAAAGCTATTCTCCAATCATGAAATCATTCAACATCTCCAGGTCTTGCCGTaGGGCCTACGGGTGATGTGG +
Preference number: 5 (lower is better)
Translates to: RAQSYSPKLFSNHEIIQHLQVLP*GLRVMW
Trigger: CCACATCACCCGTAGGCCCAACGGCAAGACCTGGAG...ATGTTGAATGATTTCATGATTGGAGAATAGCTTTGGAGAATAGCTTTGGGCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACTCCTGGGGTACCGGCTaGTTGGGATCCCCGGTCTTG +
Preference number: 5 (lower is better)
Translates to: QILEHLESVIHNKTTASNSWGTG*LGSPVL
Trigger: CAAGACCGGGGATCCCAACAAGCCGGTACCCCAGGA...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp TCTCCATCAAAGAGGGTGAGGTGGCTCTGTACAGTGACGACGAATCTTTATTTCTCCAAAAGGCTACCTTaGTGGCCCGGTAATGATCAC +
Preference number: 5 (lower is better)
Translates to: SPSKRVRWLCTVTTNLYFSKRLP*WPGNDH
Trigger: GTGATCATTACCGGGCCACAAAGGTAGCCTTTTGGA...GAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACTTGGTGCTCCAGGTCTaGCCGTTGGGCCTACGGGTG +
Preference number: 5 (lower is better)
Translates to: QILEHLESVIHNKTTASNLVLQV*PLGLRV
Trigger: CACCCGTAGGCCCAACGGCAAGACCTGGAGCACCAA...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACGGGTACCCCCAGGTATaGGTCCACAGGACCCAGGAT +
Preference number: 5 (lower is better)
Translates to: QILEHLESVIHNKTTASNGYPQV*VHRTQD
Trigger: ATCCTGGGTCCTGTGGACCAATACCTGGGGGTACCC...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065858.3
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTGCGACGATATCCAAGTaGGCAGTGAACCAGACTGGC +
Preference number: 5 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSATISK*AVNQTG
Trigger: GCCAGTCTGGTTCACTGCCAACTTGGATATCGTCGC...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp CAGTTTGGTCTACTTAGCAAGTTTCAGGACAGCCAGGACTACATGGAGAGACCCAGCATAACATCATTCTaGGAGAAGTTGCAGGGGAAA +
Preference number: 5 (lower is better)
Translates to: QFGLLSKFQDSQDYMERPSITSF*EKLQGK
Trigger: TTTCCCCTGCAACTTCTCCAAGAATGATGTTATGCT...GGGTCTCTCCATGTAGTCCTGGCTGTCCTGAAACTTGCTAAGTAGACCAAACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp TCTCCATCAAAGAGGGTGAGGTGGCTCTGTACAGTGACGACGAATCTTTATTTCAATGATCACGAACCCTaGGTTTCAGCCCGATGTGAA +
Preference number: 5 (lower is better)
Translates to: SPSKRVRWLCTVTTNLYFNDHEP*VSARCE
Trigger: TTCACATCGGGCTGAAACCAAGGGTTCGTGATCATT...GAAATAAAGATTCGTCGTCACTGTACAGAGCCACCTCACCCTCTTTGATGGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp TGGAGAGCTGATTTAATAGTTAAGAGCACTTGTTACTCTTGCAGAGGACCTGGGTCCAAAAGGCTACCTTaGTGGCCCGGTAATGATCAC +
Preference number: 5 (lower is better)
Translates to: WRADLIVKSTCYSCRGPGSKRLP*WPGNDH
Trigger: GTGATCATTACCGGGCCACAAAGGTAGCCTTTTGGA...CCCAGGTCCTCTGCAAGAGTAACAAGTGCTCTTAACTATTAAATCAGCTCTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACGGCAGCCCAGTACTGTaGAACCCTGCGGCAAAGGTG +
Preference number: 5 (lower is better)
Translates to: QILEHLESVIHNKTTASNGSPVL*NPAAKV
Trigger: CACCTTTGCCGCAGGGTTCAACAGTACTGGGCTGCC...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCCTCCTTGGCACTCTTTaGTCGAAGACAATCCACCAT +
Preference number: 5 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFLLGTL*SKTIHH
Trigger: ATGGTGGATTGTCTTCGACAAAAGAGTGCCAAGGAG...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCTGTTCTACCAGCTCCTaGGCACTCTTTTGTCGAAGA +
Preference number: 5 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFCSTSS*ALFCRR
Trigger: TCTTCGACAAAAGAGTGCCAAGGAGCTGGTAGAACA...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp AGAACAATACCTCTCACACCTTACACTTGGCTGTTACATTTTGGACTCCAATCTGGTATACTTCACTGGTaGGTAGTTCACAGCCCAGCT +
Preference number: 5 (lower is better)
Translates to: RTIPLTPYTWLLHFGLQSGILHW*VVHSPA
Trigger: AGCTGGGCTGTGAACTACCAACCAGTGAAGTATACC...AGATTGGAGTCCAAAATGTAACAGCCAAGTGTAAGGTGTGAGAGGTATTGTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp AGGGCCCAAAGCTATTCTCCAAAGCTATTCTCCAATCATGAAATCATTCAACATACGTTACAGCCCACTTaGTCTGCCAGCAAGCTGGTA +
Preference number: 5 (lower is better)
Translates to: RAQSYSPKLFSNHEIIQHTLQPT*SASKLV
Trigger: TACCAGCTTGCTGGCAGACAAAGTGGGCTGTAACGT...ATGTTGAATGATTTCATGATTGGAGAATAGCTTTGGAGAATAGCTTTGGGCCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp AGGGCCCAAAGCTATTCTCCAAAGCTATTCTCCAATCATGAAATCATTCAACATAGACCCTCACCCTGGTaGACGCCTAGCATGATATCA +
Preference number: 5 (lower is better)
Translates to: RAQSYSPKLFSNHEIIQHRPSPW*TPSMIS
Trigger: TGATATCATGCTAGGCGTCAACCAGGGTGAGGGTCT...ATGTTGAATGATTTCATGATTGGAGAATAGCTTTGGAGAATAGCTTTGGGCCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp GGCATGATGGTACACATCTTTAATCCCAGCACTCAGGCAGATCTCTATATGTTCTTCCTACAAATTTTCTaGTTGGGCTTTCGGGCGCAT +
Preference number: 5 (lower is better)
Translates to: GMMVHIFNPSTQADLYMFFLQIF*LGFRAH
Trigger: ATGCGCCCGAAAGCCCAACAAGAAAATTTGTAGGAA...GAACATATAGAGATCTGCCTGAGTGCTGGGATTAAAGATGTGTACCATCATGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACACGTTACAGCCCACTTaGTCTGCCAGCAAGCTGGTA +
Preference number: 5 (lower is better)
Translates to: QILEHLESVIHNKTTASNTLQPT*SASKLV
Trigger: TACCAGCTTGCTGGCAGACAAAGTGGGCTGTAACGT...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp AGGGCCCAAAGCTATTCTCCAAAGCTATTCTCCAATCATGAAATCATTCAACATCTACAAATTTTCTTGTaGGGCTTTCGGGCGCATTCC +
Preference number: 5 (lower is better)
Translates to: RAQSYSPKLFSNHEIIQHLQIFL*GFRAHS
Trigger: GGAATGCGCCCGAAAGCCCAACAAGAAAATTTGTAG...ATGTTGAATGATTTCATGATTGGAGAATAGCTTTGGAGAATAGCTTTGGGCCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACTGTTCTACCAGCTCCTaGGCACTCTTTTGTCGAAGA +
Preference number: 5 (lower is better)
Translates to: QILEHLESVIHNKTTASNCSTSS*ALFCRR
Trigger: TCTTCGACAAAAGAGTGCCAAGGAGCTGGTAGAACA...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS-3UTR CAA 90 bp CAGATCTTGGAGCATTTGGAATCAGTCATACATAACAAAACAACAGCTTCAAACAATGATCACGAACCCTaGGTTTCAGCCCGATGTGAA +
Preference number: 5 (lower is better)
Translates to: QILEHLESVIHNKTTASNNDHEP*VSARCE
Trigger: TTCACATCGGGCTGAAACCAAGGGTTCGTGATCATT...GTTTGAAGCTGTTGTTTTGTTATGTATGACTGATTCCAAATGCTCCAAGATCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS TCA 72 bp GCTTGGTGCTCCAGGTCTTGCCGTTGGGCCTACGGGTaGTGTGGGAGCTGTGGGTGGTGTCCGGGGGCGGCA +
Preference number: 6 (lower is better)
Translates to: AWCSRSCRWAYG*CGSCGWCPGAA
Trigger: TGCCGCCCCCGGACACCACCCACAGCTCCCACATCACCCGTAGGCCCAACGGCAAGACCTGGAGCACCAAGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS GCA 72 bp AGGGGAGCGCCGCAGGGTCAGGGTATAGTCGGGCAGTaGTGTGAGGCGAAGTGTGTCATGTGGGGGACCGGC +
Preference number: 6 (lower is better)
Translates to: RGAPQGQGIVGQ*CEAKCVMWGTG
Trigger: GCCGGTCCCCCACATGACACACTTCGCCTCACAGCACTGCCCGACTATACCCTGACCCTGCGGCGCTCCCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS CCA 72 bp GTCTTGCCGTTGGGCCTACGGGTGATGTGGGAGCTGTaGGTGGTGTCCGGGGGCGGCACTTTGGTGGTCGTG +
Preference number: 6 (lower is better)
Translates to: VLPLGLRVMWEL*VVSGGGTLVVV
Trigger: CACGACCACCAAAGTGCCGCCCCCGGACACCACCCACAGCTCCCACATCACCCGTAGGCCCAACGGCAAGAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS CCA 72 bp GTGCTCCAGGTCTTGCCGTTGGGCCTACGGGTGATGTaGGAGCTGTGGGTGGTGTCCGGGGGCGGCACTTTG +
Preference number: 6 (lower is better)
Translates to: VLQVLPLGLRVM*ELWVVSGGGTL
Trigger: CAAAGTGCCGCCCCCGGACACCACCCACAGCTCCCACATCACCCGTAGGCCCAACGGCAAGACCTGGAGCAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS TCA 72 bp AGCGCCGCAGGGTCAGGGTATAGTCGGGCAGTGCTGTaGGGCGAAGTGTGTCATGTGGGGGACCGGCCTCAC +
Preference number: 6 (lower is better)
Translates to: SAAGSGYSRAVL*GEVCHVGDRPH
Trigger: GTGAGGCCGGTCCCCCACATGACACACTTCGCCTCACAGCACTGCCCGACTATACCCTGACCCTGCGGCGCT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS CAA 72 bp GAAATCGCCGGCCGCTTGGTGCTCCAGGTCTTGCCGTaGGGCCTACGGGTGATGTGGGAGCTGTGGGTGGTG +
Preference number: 6 (lower is better)
Translates to: EIAGRLVLQVLP*GLRVMWELWVV
Trigger: CACCACCCACAGCTCCCACATCACCCGTAGGCCCAACGGCAAGACCTGGAGCACCAAGCGGCCGGCGATTTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS CAA 72 bp GCAGGTGAAATCGCCGGCCGCTTGGTGCTCCAGGTCTaGCCGTTGGGCCTACGGGTGATGTGGGAGCTGTGG +
Preference number: 6 (lower is better)
Translates to: AGEIAGRLVLQV*PLGLRVMWELW
Trigger: CCACAGCTCCCACATCACCCGTAGGCCCAACGGCAAGACCTGGAGCACCAAGCGGCCGGCGATTTCACCTGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS CCA 72 bp GGGAAAGTGTGTGGCGTTCCGGATGCCCGACCAGGATaGGGGTGGTTCAGGGGGCAGGAAACGTTTCTCGCC +
Preference number: 6 (lower is better)
Translates to: GKVCGVPDARPG*GWFRGQETFLA
Trigger: GGCGAGAAACGTTTCCTGCCCCCTGAACCACCCCCATCCTGGTCGGGCATCCGGAACGCCACACACTTTCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000130555.8
ENSMUST00000151528.8
CDS GCA 72 bp CCTGGTCCCCATTCCAGGACCCAGGGGCATTCTCATTaGTGTAGGCAGGTGAAATCGCCGGCCGCTTGGTGC +
Preference number: 6 (lower is better)
Translates to: PGPHSRTQGHSH*CRQVKSPAAWC
Trigger: GCACCAAGCGGCCGGCGATTTCACCTGCCTACAGCAATGAGAATGCCCCTGGGTCCTGGAATGGGGACCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS CCA 72 bp GGCAGCATGACTTCGGGCACAGCTGTGTGGATGTTCTaGGGGCACACTGGGGGAAAGTGTGTGGCGTTCCGG +
Preference number: 6 (lower is better)
Translates to: GSMTSGTAVWMF*GHTGGKCVAFR
Trigger: CCGGAACGCCACACACTTTCCCCCAGTGTGCCCCCAGAACATCCACACAGCTGTGCCCGAAGTCATGCTGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000130555.8
ENSMUST00000151528.8
CDS CCA 72 bp TTCAGTGGAGTAGTCTCGAGGGTTCTCAACCAGGAGTaGCCCCGCATCCTGGTCCCCATTCCAGGACCCAGG +
Preference number: 6 (lower is better)
Translates to: FSGVVSRVLNQE*PRILVPIPGPR
Trigger: CCTGGGTCCTGGAATGGGGACCAGGATGCGGGGCCACTCCTGGTTGAGAACCCTCGAGACTACTCCACTGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS CAA 90 bp ACGTTTCTCGCCGATCGGGGGAGCTGCGTAGGGTACCCCCAGGTATaGGTCCACAGGACCCAGGATTTCACTGGGCAATGGTACTCTGGC +
Preference number: 6 (lower is better)
Translates to: TFLADRGSCVGYPQV*VHRTQDFTGQWYSG
Trigger: GCCAGAGTACCATTGCCCAGTGAAATCCTGGGTCCTGTGGACCAATACCTGGGGGTACCCTACGCAGCTCCCCCGATCGGCGAGAAACGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000130555.8
ENSMUST00000151528.8
CDS TCA 72 bp GTACTCTGGCACCCCTTAGCTTCCCAAAGTGAGTATTaGCTGTGGGTGCCGGGGCCTGGGTACTGGCCCTCA +
Preference number: 6 (lower is better)
Translates to: VLWHPLASQSEY*LWVPGPGYWPS
Trigger: TGAGGGCCAGTACCCAGGCCCCGGCACCCACAGTCAATACTCACTTTGGGAAGCTAAGGGGTGCCAGAGTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000130555.8
ENSMUST00000151528.8
CDS CCA 72 bp GGGAGCTGTGGGTGGTGTCCGGGGGCGGCACTTTGGTaGTCGTGGATGTATAGTGGAACATGTCATGCAGGT +
Preference number: 6 (lower is better)
Translates to: GSCGWCPGAALW*SWMYSGTCHAG
Trigger: ACCTGCATGACATGTTCCACTATACATCCACGACCACCAAAGTGCCGCCCCCGGACACCACCCACAGCTCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS CCA 72 bp TGTCATGTGGGGGACCGGCCTCACATTCATGGTGAGTaGGACCCAACTGTAATGCTGCCAGCTCCTCCTCCG +
Preference number: 6 (lower is better)
Translates to: CHVGDRPHIHGE*DPTVMLPAPPP
Trigger: CGGAGGAGGAGCTGGCAGCATTACAGTTGGGTCCCACTCACCATGAATGTGAGGCCGGTCCCCCACATGACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS CCA 72 bp ATAGTCGGGCAGTGCTGTGAGGCGAAGTGTGTCATGTaGGGGACCGGCCTCACATTCATGGTGAGTGGGACC +
Preference number: 6 (lower is better)
Translates to: IVGQCCEAKCVM*GTGLTFMVSGT
Trigger: GGTCCCACTCACCATGAATGTGAGGCCGGTCCCCCACATGACACACTTCGCCTCACAGCACTGCCCGACTAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS TCA 72 bp GGCAATGGTACTCTGGCACCCCTTAGCTTCCCAAAGTaGGTATTGACTGTGGGTGCCGGGGCCTGGGTACTG +
Preference number: 6 (lower is better)
Translates to: GNGTLAPLSFPK*VLTVGAGAWVL
Trigger: CAGTACCCAGGCCCCGGCACCCACAGTCAATACTCACTTTGGGAAGCTAAGGGGTGCCAGAGTACCATTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000130555.8
ENSMUST00000151528.8
CDS CCA 72 bp CCCCCAGGTATTGGTCCACAGGACCCAGGATTTCACTaGGCAATGGTACTCTGGCACCCCTTAGCTTCCCAA +
Preference number: 6 (lower is better)
Translates to: PPGIGPQDPGFH*AMVLWHPLASQ
Trigger: TTGGGAAGCTAAGGGGTGCCAGAGTACCATTGCCCAGTGAAATCCTGGGTCCTGTGGACCAATACCTGGGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000130555.8
ENSMUST00000151528.8
CDS CCA 72 bp TGCAGATCGGCTGTCACCACTGAAGGCTCCACCCACTaGTGGTCAGTGAAGAGTGCCACCAGTGTTTTACGG +
Preference number: 6 (lower is better)
Translates to: CRSAVTTEGSTH*WSVKSATSVLR
Trigger: CCGTAAAACACTGGTGGCACTCTTCACTGACCACCAGTGGGTGGAGCCTTCAGTGGTGACAGCCGATCTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000130555.8
ENSMUST00000151528.8
CDS CCA 72 bp GGTGGGGCACCAGGTGTTTCCAAAAGGCTACCTTTGTaGCCCGGTAATGATCACGAACCCTTGGTTTCAGCC +
Preference number: 6 (lower is better)
Translates to: GGAPGVSKRLPL*PGNDHEPLVSA
Trigger: GGCTGAAACCAAGGGTTCGTGATCATTACCGGGCCACAAAGGTAGCCTTTTGGAAACACCTGGTGCCCCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS CCA 72 bp TGTGGGTGGTGTCCGGGGGCGGCACTTTGGTGGTCGTaGATGTATAGTGGAACATGTCATGCAGGTTGTACA +
Preference number: 6 (lower is better)
Translates to: CGWCPGAALWWS*MYSGTCHAGCT
Trigger: TGTACAACCTGCATGACATGTTCCACTATACATCCACGACCACCAAAGTGCCGCCCCCGGACACCACCCACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000151528.8
CDS CAA 90 bp GCGGGCTGGCTGAATGTCCTGTTCTACCAGCTCCTTGGCACTCTTTaGTCGAAGACAATCCACCATATCCACAGTGTCCAGGACGTTACA +
Preference number: 6 (lower is better)
Translates to: AGWLNVLFYQLLGTL*SKTIHHIHSVQDVT
Trigger: TGTAACGTCCTGGACACTGTGGATATGGTGGATTGTCTTCGACAAAAGAGTGCCAAGGAGCTGGTAGAACAGGACATTCAGCCAGCCCGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000130555.8
ENSMUST00000151528.8
CDS CCA 72 bp AGCGGGCTGGCTGAATGTCCTGTTCTACCAGCTCCTTaGCACTCTTTTGTCGAAGACAATCCACCATATCCA +
Preference number: 6 (lower is better)
Translates to: SGLAECPVLPAP*HSFVEDNPPYP
Trigger: TGGATATGGTGGATTGTCTTCGACAAAAGAGTGCCAAGGAGCTGGTAGAACAGGACATTCAGCCAGCCCGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000130555.8
ENSMUST00000151528.8
CDS CAA 72 bp ACCATATCCACAGTGTCCAGGACGTTACAGCCCACTTaGTCTGCCAGCAAGCTGGTATACTTCACTGGTTGG +
Preference number: 6 (lower is better)
Translates to: TISTVSRTLQPT*SASKLVYFTGW
Trigger: CCAACCAGTGAAGTATACCAGCTTGCTGGCAGACAAAGTGGGCTGTAACGTCCTGGACACTGTGGATATGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000130555.8
ENSMUST00000151528.8
CDS GCA 72 bp ATCCACAGTGTCCAGGACGTTACAGCCCACTTTGTCTaGCAGCAAGCTGGTATACTTCACTGGTTGGTAGTT +
Preference number: 6 (lower is better)
Translates to: IHSVQDVTAHFV*QQAGILHWLVV
Trigger: AACTACCAACCAGTGAAGTATACCAGCTTGCTGGCAGACAAAGTGGGCTGTAACGTCCTGGACACTGTGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000130555.8
ENSMUST00000151528.8
CDS CCA 72 bp GGGCGCATTCCTTGGAAATCCGCTTTACATCTTCCGTaGGCACATACACATTCAGATAGAGGCAATCTTCGT +
Preference number: 6 (lower is better)
Translates to: GRIPWKSALHLP*AHTHSDRGNLR
Trigger: ACGAAGATTGCCTCTATCTGAATGTGTATGTGCCCACGGAAGATGTAAAGCGGATTTCCAAGGAATGCGCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151528.8
CDS GCA 72 bp AGAATGATGAGACAGTGTAAGGAGACTGACACAGGATaGACCGATGCCAGAGCCAAAGACAGTAATTCTACG +
Preference number: 6 (lower is better)
Translates to: RMMRQCKETDTG*TDARAKDSNST
Trigger: CGTAGAATTACTGTCTTTGGCTCTGGCATCGGTGCATCCTGTGTCAGTCTCCTTACACTGTCTCATCATTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000130555.8
ENSMUST00000151528.8
CDS CCA 72 bp TGGGCACATACACATTCAGATAGAGGCAATCTTCGTTaGGCTCCTGGATATAAGTGGCGACGATATCCAAGT +
Preference number: 6 (lower is better)
Translates to: WAHTHSDRGNLR*APGYKWRRYPS
Trigger: ACTTGGATATCGTCGCCACTTATATCCAGGAGCCCAACGAAGATTGCCTCTATCTGAATGTGTATGTGCCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065858.3
ENSMUST00000118111.8
ENSMUST00000130555.8
ENSMUST00000151528.8
CDS CAA 72 bp CTACAAATTTTCTTGTTGGGCTTTCGGGCGCATTCCTaGGAAATCCGCTTTACATCTTCCGTGGGCACATAC +
Preference number: 6 (lower is better)
Translates to: LQIFLLGFRAHS*EIRFTSSVGTY
Trigger: GTATGTGCCCACGGAAGATGTAAAGCGGATTTCCAAGGAATGCGCCCGAAAGCCCAACAAGAAAATTTGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151528.8
CDS CCA 72 bp TACAAATTTTCTTGTTGGGCTTTCGGGCGCATTCCTTaGAAATCCGCTTTACATCTTCCGTGGGCACATACA +
Preference number: 6 (lower is better)
Translates to: YKFSCWAFGRIP*KSALHLPWAHT
Trigger: TGTATGTGCCCACGGAAGATGTAAAGCGGATTTCCAAGGAATGCGCCCGAAAGCCCAACAAGAAAATTTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151528.8