RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NLGN1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000063887

Ensembl transcript IDs: ENSMUST00000075054.10, ENSMUST00000108308.10, ENSMUST00000191835.2, ENSMUST00000193603.6

Found 347 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CATGTATCAAGGATTATGCTTTTAGGTGCTGGAGAGATGGCTCAGTaGTTAAGAGCACTATCTGCTCTTCCAGGGGACCTGGGTTCAAAT +
Preference number: 1 (lower is better)
Translates to: HVSRIMLLGAGEMAQ*LRALSALPGDLGSN
Trigger: ATTTGAACCCAGGTCCCCTGGAAGAGCAGATAGTGCTCTTAAGCACTGAGCCATCTCTCCAGCACCTAAAAGCATAATCCTTGATACATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR TCA 90 bp CAGCTGTTGACTCTCCTAGGTTCTGCACCTACATTGTTCCTCTACTaGGATCTCATGAGTAAATTCAAGAGACCCTCAGCGAGAAAGATG +
Preference number: 1 (lower is better)
Translates to: QLLTLLGSAPTLFLY*DLMSKFKRPSARKM
Trigger: CATCTTTCTCGCTGAGGGTCTCTTGAATTTACTCATGAGATCTCAGTAGAGGAACAATGTAGGTGCAGAACCTAGGAGAGTCAACAGCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR CCA 90 bp TGTGTGTCCAAACACAGGTGGAACAGACCCAACCTGATGAAAGTATaGCACATTCCCAGTGAGTTGCTGACCAATATGACTTTAGAGAAG +
Preference number: 1 (lower is better)
Translates to: CVSKHRWNRPNLMKV*HIPSELLTNMTLEK
Trigger: CTTCTCTAAAGTCATATTGGTCAGCAACTCACTGGGAATGTGCCATACTTTCATCAGGTTGGGTCTGTTCCACCTGTGTTTGGACACACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR TCA 90 bp GAGATTCCTGTGGTCTTCGAGAATTCATTTGAAATTGCACATATGTaGAAGACAAACCCTCCAGCTGTTGACTCTCCTAGGTTCTGCACC +
Preference number: 1 (lower is better)
Translates to: EIPVVFENSFEIAHM*KTNPPAVDSPRFCT
Trigger: GGTGCAGAACCTAGGAGAGTCAACAGCTGGAGGGTTTGTCTTTCACATATGTGCAATTTCAAATGAATTCTCGAAGACCACAGGAATCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR TCA 90 bp TCTCCATATTATCTTTATTTCACCCAAGGACCACGGATGTGGTCGTaGTACACAGCATCCTTCCCACCGAGTAGTATACAAGTGTTTGCT +
Preference number: 1 (lower is better)
Translates to: SPYYLYFTQGPRMWS*YTASFPPSSIQVFA
Trigger: AGCAAACACTTGTATACTACTCGGTGGGAAGGATGCTGTGTATCACGACCACATCCGTGGTCCTTGGGTGAAATAAAGATAATATGGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR GCA 90 bp TTCTCCAAACATTTGGGGACATGTATCAAGGATTATGCTTTTAGGTaGTGGAGAGATGGCTCAGTGCTTAAGAGCACTATCTGCTCTTCC +
Preference number: 1 (lower is better)
Translates to: FSKHLGTCIKDYAFR*WRDGSVLKSTICSS
Trigger: GGAAGAGCAGATAGTGCTCTTAAGCACTGAGCCATCTCTCCAGCACCTAAAAGCATAATCCTTGATACATGTCCCCAAATGTTTGGAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR CCA 90 bp AAAATTCTAAAATATGGTCACTGGCTTAGAATTCCAGACTCATGGTaGGTGGCTAATGGCAAGAGTTCACAATTACAAGCTAGGACCAAA +
Preference number: 1 (lower is better)
Translates to: KILKYGHWLRIPDSW*VANGKSSQLQARTK
Trigger: TTTGGTCCTAGCTTGTAATTGTGAACTCTTGCCATTAGCCACCCACCATGAGTCTGGAATTCTAAGCCAGTGACCATATTTTAGAATTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR TCA 90 bp TGTGTACTTAAGCAAATATGGTCTACACAATTAAAGGGCTCCAAATaGAAACTGGCGAAATTATCTGACATTCCATTGGTGTGTCCCTTG +
Preference number: 1 (lower is better)
Translates to: CVLKQIWSTQLKGSK*KLAKLSDIPLVCPL
Trigger: CAAGGGACACACCAATGGAATGTCAGATAATTTCGCCAGTTTTCATTTGGAGCCCTTTAATTGTGTAGACCATATTTGCTTAAGTACACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR TCA 90 bp TCACATAATATTCCTCCTTATTTAAATAGTGAGAGTCTTCCGAGTTaGAAGCCAAGGAATCTTCCAATAATCTTTTACTGCACTCCATCA +
Preference number: 1 (lower is better)
Translates to: SHNIPPYLNSESLPS*KPRNLPIIFYCTPS
Trigger: TGATGGAGTGCAGTAAAAGATTATTGGAAGATTCCTTGGCTTTCAACTCGGAAGACTCTCACTATTTAAATAAGGAGGAATATTATGTGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000191835.2
ENSMUST00000193603.6
3UTR TCA 90 bp TTCATTCTAGCTTGGGAATTTTACCCTTGTCTTTGTTTATATGGATaGAATACAAATGTCTCATGCATCTACAGTCTCAAGGTCCAATCT +
Preference number: 1 (lower is better)
Translates to: FILAWEFYPCLCLYG*NTNVSCIYSLKVQS
Trigger: AGATTGGACCTTGAGACTGTAGATGCATGAGACATTTGTATTTCATCCATATAAACAAAGACAAGGGTAAAATTCCCAAGCTAGAATGAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR CCA 90 bp TATACTGATATTACTGGTAAACAACAGGGGATTCAGAGATTCCTGTaGTCTTCGAGAATTCATTTGAAATTGCACATATGTGAAAGACAA +
Preference number: 1 (lower is better)
Translates to: YTDITGKQQGIQRFL*SSRIHLKLHICERQ
Trigger: TTGTCTTTCACATATGTGCAATTTCAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGTAATATCAGTATA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR-3UTR GCA 90 bp GTTCCAGGTTCTAAGGTAGTACTAAAGTTCCCAGAGTCTCCCTCCATGCAGAGTGGCATCCTTACACCTTaGAAGACTGTTAACGAAAGG +
Preference number: 2 (lower is better)
Translates to: VPGSKVVLKFPESPSMQSGILTP*KTVNER
Trigger: CCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCC...ACTCTGCATGGAGGGAGACTCTGGGAACTTTAGTACTACCTTAGAACCTGGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR-3UTR TCA 90 bp GTTCCAGGTTCTAAGGTAGTACTAAAGTTCCCAGAGTCTCCCTCCATGCAGAGTGAGAAAGATGCAATGTaGAGAGGGACTATGCTTTCT +
Preference number: 2 (lower is better)
Translates to: VPGSKVVLKFPESPSMQSEKDAM*RGTMLS
Trigger: AGAAAGCATAGTCCCTCTTCACATTGCATCTTTCTC...ACTCTGCATGGAGGGAGACTCTGGGAACTTTAGTACTACCTTAGAACCTGGAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR-3UTR TCA 90 bp GTTCCAGGTTCTAAGGTAGTACTAAAGTTCCCAGAGTCTCCCTCCATGCAGAGTATCAGCATGTGCTCTTaGGGTCCATCTCATTGTTTT +
Preference number: 2 (lower is better)
Translates to: VPGSKVVLKFPESPSMQSISMCS*GPSHCF
Trigger: AAAACAATGAGATGGACCTCAAGAGCACATGCTGAT...ACTCTGCATGGAGGGAGACTCTGGGAACTTTAGTACTACCTTAGAACCTGGAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR-3UTR GCA 90 bp GAATGGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCGTTTGGTGTTCCACATaGCTAACTCCGTTAAGTAAC +
Preference number: 2 (lower is better)
Translates to: EWYCWGILTPCKTVNERSVWCST*LTPLSN
Trigger: GTTACTTAACGGAGTTAGGCATGTGGAACACCAAAC...GCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACCATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR CAA 90 bp AGGGGACCTGGGTTCAAATCCCAGTACCCATATGGTAGCTCACAATaGTTTGTAACACTAGTTCCAGTGAATCTGACACCCTTACATAGA +
Preference number: 2 (lower is better)
Translates to: RGPGFKSQYPYGSSQ*FVTLVPVNLTPLHR
Trigger: TCTATGTAAGGGTGTCAGATTCACTGGAACTAGTGTTACAAACAATTGTGAGCTACCATATGGGTACTGGGATTTGAACCCAGGTCCCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR-3UTR GCA 90 bp GTAACACTCTTACATGTATATTACATATCCATAGCAACCTCCAGACAACGTCAGCAGAGTCTCCCTCCATaGAGAGTTCTGCAGTTGCCT +
Preference number: 2 (lower is better)
Translates to: VTLLHVYYISIATSRQRQQSLPP*RVLQLP
Trigger: AGGCAACTGCAGAACTCTGCATGGAGGGAGACTCTG...CTGACGTTGTCTGGAGGTTGCTATGGATATGTAATATACATGTAAGAGTGTTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR-3UTR GCA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGCCTCAGCGAGAAAGATaGAATGTGAAGAGGGACTAT +
Preference number: 2 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLPQRER*NVKRDY
Trigger: ATAGTCCCTCTTCACATTGCATCTTTCTCGCTGAGG...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR-3UTR CCA 90 bp GAATGGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCGCTCCAAATGAAAACTaGCGAAATTATCTGACATTC +
Preference number: 2 (lower is better)
Translates to: EWYCWGILTPCKTVNERSAPNEN*RNYLTF
Trigger: GAATGTCAGATAATTTCGCCAGTTTTCATTTGGAGC...GCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACCATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR-3UTR CCA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACGCTCCAAATGAAAACTaGCGAAATTATCTGACATTC +
Preference number: 2 (lower is better)
Translates to: GTVGASLHLARLLTKGANAPNEN*RNYLTF
Trigger: GAATGTCAGATAATTTCGCCAGTTTTCATTTGGAGC...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR-3UTR TCA 90 bp TTCTCCATATTATCTTTATTTCACCCAAGGACCACGGATGTGGTCGTGATACACATCAGCATGTGCTCTTaGGGTCCATCTCATTGTTTT +
Preference number: 2 (lower is better)
Translates to: FSILSLFHPRTTDVVVIHISMCS*GPSHCF
Trigger: AAAACAATGAGATGGACCTCAAGAGCACATGCTGAT...GTGTATCACGACCACATCCGTGGTCCTTGGGTGAAATAAAGATAATATGGAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR-3UTR GCA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGGTTTGGTGTTCCACATaGCTAACTCCGTTAAGTAAC +
Preference number: 2 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLVWCST*LTPLSN
Trigger: GTTACTTAACGGAGTTAGGCATGTGGAACACCAAAC...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR-3UTR CCA 90 bp GAATGGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCGTACTTAAGCAAATATaGTCTACACAATTAAAGGGC +
Preference number: 2 (lower is better)
Translates to: EWYCWGILTPCKTVNERSVLKQI*STQLKG
Trigger: GCCCTTTAATTGTGTAGACCATATTTGCTTAAGTAC...GCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACCATTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR CAA 90 bp AAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTaGAAATTGCACATATGTGAAAGACAAACCCTCCAGCTGTTGACT +
Preference number: 2 (lower is better)
Translates to: KQQGIQRFLWSSRIH*KLHICERQTLQLLT
Trigger: AGTCAACAGCTGGAGGGTTTGTCTTTCACATATGTGCAATTTCAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR CAA 90 bp TGGGCATTGCTTACTAAAGAAATGAGTGGCTTAGACCTGTCATTCTaGAGTGACATTCTCTGGCTTCTAACTTCTCTGAGAAAAGAGGAA +
Preference number: 2 (lower is better)
Translates to: WALLTKEMSGLDLSF*SDILWLLTSLRKEE
Trigger: TTCCTCTTTTCTCAGAGAAGTTAGAAGCCAGAGAATGTCACTCAAGAATGACAGGTCTAAGCCACTCATTTCTTTAGTAAGCAATGCCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR-3UTR GCA 90 bp TTGGCCAAAATATTAGCCTGGGAAAAATTACCATCATACACCTTGATTGACAGAAAAGCCAGCACCATCTaGCCAACTCTCTGTATCCTT +
Preference number: 2 (lower is better)
Translates to: LAKILAWEKLPSYTLIDRKASTI*PTLCIL
Trigger: AAGGATACAGAGAGTTGGGCAGATGGTGCTGGCTTT...TCTGTCAATCAAGGTGTATGATGGTAATTTTTCCCAGGCTAATATTTTGGCCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR-3UTR CCA 90 bp TTCTCCATATTATCTTTATTTCACCCAAGGACCACGGATGTGGTCGTGATACACTATCTGACATTCCATTaGTGTGTCCCTTGTGCATAT +
Preference number: 2 (lower is better)
Translates to: FSILSLFHPRTTDVVVIHYLTFH*CVPCAY
Trigger: ATATGCACAAGGGACACACCAATGGAATGTCAGATA...GTGTATCACGACCACATCCGTGGTCCTTGGGTGAAATAAAGATAATATGGAGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR-3UTR CCA 90 bp GAGAAGGCACTTAAGCACCACAGGTGGATTTTCCAGTTTGTATTTTCTGTAGTGCTGAGCTCTCCAAATTaGGAACTTGTGATGTTCAAA +
Preference number: 2 (lower is better)
Translates to: EKALKHHRWIFQFVFSVVLSSPN*ELVMFK
Trigger: TTTGAACATCACAAGTTCCCAATTTGGAGAGCTCAG...CACTACAGAAAATACAAACTGGAAAATCCACCTGTGGTGCTTAAGTGCCTTCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR-3UTR TCA 90 bp TGCAAGACTGTTAACGAAAGGAGCAAACTTCAGAGTAACAAACCCACAGCAAATTTAGTTTCTGCCAATTaGTGGAGGAAGCTCCTATTA +
Preference number: 2 (lower is better)
Translates to: CKTVNERSKLQSNKPTANLVSAN*WRKLLL
Trigger: TAATAGGAGCTTCCTCCATCAATTGGCAGAAACTAA...ATTTGCTGTGGGTTTGTTACTCTGAAGTTTGCTCCTTTCGTTAACAGTCTTGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR-3UTR TCA 90 bp TTCTCCATATTATCTTTATTTCACCCAAGGACCACGGATGTGGTCGTGATACACTTTTGTCATGCAACATaGGTAAATCAATCGACTGAG +
Preference number: 2 (lower is better)
Translates to: FSILSLFHPRTTDVVVIHFCHAT*VNQSTE
Trigger: CTCAGTCGATTGATTTACTCATGTTGCATGACAAAA...GTGTATCACGACCACATCCGTGGTCCTTGGGTGAAATAAAGATAATATGGAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR-3UTR GCA 90 bp ATGCACATCGTGCTAAAAATATCCAGTCTCCTTGATCCCCACGACTTAGTACTGTTGGTGTGTCCCTTGTaGATATTCATAGTTGATTTT +
Preference number: 2 (lower is better)
Translates to: MHIVLKISSLLDPHDLVLLVCPL*IFIVDF
Trigger: AAAATCAACTATGAATATGCACAAGGGACACACCAA...CAGTACTAAGTCGTGGGGATCAAGGAGACTGGATATTTTTAGCACGATGTGCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR-3UTR TCA 90 bp GATACACAGCATCCTTCCCACCGAGTAGTATACAAGTGTTTGCTTTTGTATAATTTAGTTTCTGCCAATTaGTGGAGGAAGCTCCTATTA +
Preference number: 2 (lower is better)
Translates to: DTQHPSHRVVYKCLLLYNLVSAN*WRKLLL
Trigger: TAATAGGAGCTTCCTCCATCAATTGGCAGAAACTAA...ATTATACAAAAGCAAACACTTGTATACTACTCGGTGGGAAGGATGCTGTGTATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR-3UTR TCA 90 bp GTAACACTCTTACATGTATATTACATATCCATAGCAACCTCCAGACAACGTCAGTGGGATTCATATCAGTaGGTATTCACCACTATACCT +
Preference number: 2 (lower is better)
Translates to: VTLLHVYYISIATSRQRQWDSYQ*VFTTIP
Trigger: AGGTATAGTGGTGAATACTCACTGATATGAATCCCA...CTGACGTTGTCTGGAGGTTGCTATGGATATGTAATATACATGTAAGAGTGTTAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR-3UTR TCA 90 bp GTAACACTCTTACATGTATATTACATATCCATAGCAACCTCCAGACAACGTCAGATGTCTCTTAGCATTTaGCTAATCGCCATTCTCCAT +
Preference number: 2 (lower is better)
Translates to: VTLLHVYYISIATSRQRQMSLSI*LIAILH
Trigger: ATGGAGAATGGCGATTAGTCAAATGCTAAGAGACAT...CTGACGTTGTCTGGAGGTTGCTATGGATATGTAATATACATGTAAGAGTGTTAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR-3UTR TCA 90 bp TTGGCCAAAATATTAGCCTGGGAAAAATTACCATCATACACCTTGATTGACAGAGCAGCCCTAAAAATCTaGCTGTTTGTTTCCTTTCAG +
Preference number: 2 (lower is better)
Translates to: LAKILAWEKLPSYTLIDRAALKI*LFVSFQ
Trigger: CTGAAAGGAAACAAACAGTCAGATTTTTAGGGCTGC...TCTGTCAATCAAGGTGTATGATGGTAATTTTTCCCAGGCTAATATTTTGGCCAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR-3UTR GCA 90 bp TGCAAGACTGTTAACGAAAGGAGCAAACTTCAGAGTAACAAACCCACAGCAAATTTCAGCATGAACTTCTaGTATGCCATTAACAGCATA +
Preference number: 2 (lower is better)
Translates to: CKTVNERSKLQSNKPTANFSMNF*YAINSI
Trigger: TATGCTGTTAATGGCATAGCAGAAGTTCATGCTGAA...ATTTGCTGTGGGTTTGTTACTCTGAAGTTTGCTCCTTTCGTTAACAGTCTTGCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR-3UTR CCA 90 bp GATACACAGCATCCTTCCCACCGAGTAGTATACAAGTGTTTGCTTTTGTATAATTATCTGACATTCCATTaGTGTGTCCCTTGTGCATAT +
Preference number: 2 (lower is better)
Translates to: DTQHPSHRVVYKCLLLYNYLTFH*CVPCAY
Trigger: ATATGCACAAGGGACACACCAATGGAATGTCAGATA...ATTATACAAAAGCAAACACTTGTATACTACTCGGTGGGAAGGATGCTGTGTATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR-3UTR TCA 90 bp GATACACAGCATCCTTCCCACCGAGTAGTATACAAGTGTTTGCTTTTGTATAATTTTTGTCATGCAACATaGGTAAATCAATCGACTGAG +
Preference number: 2 (lower is better)
Translates to: DTQHPSHRVVYKCLLLYNFCHAT*VNQSTE
Trigger: CTCAGTCGATTGATTTACTCATGTTGCATGACAAAA...ATTATACAAAAGCAAACACTTGTATACTACTCGGTGGGAAGGATGCTGTGTATC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR-3UTR GCA 90 bp CAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTTTAGTTTGGTGTTCCACATaGCTAACTCCGTTAAGTAAC +
Preference number: 2 (lower is better)
Translates to: QLMEEAPIKNSNGMRRILVWCST*LTPLSN
Trigger: GTTACTTAACGGAGTTAGGCATGTGGAACACCAAAC...TAAAATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR-3UTR GCA 90 bp TGCAAGACTGTTAACGAAAGGAGCAAACTTCAGAGTAACAAACCCACAGCAAATTTGGTGTGTCCCTTGTaGATATTCATAGTTGATTTT +
Preference number: 2 (lower is better)
Translates to: CKTVNERSKLQSNKPTANLVCPL*IFIVDF
Trigger: AAAATCAACTATGAATATGCACAAGGGACACACCAA...ATTTGCTGTGGGTTTGTTACTCTGAAGTTTGCTCCTTTCGTTAACAGTCTTGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR-3UTR GCA 90 bp GATACACAGCATCCTTCCCACCGAGTAGTATACAAGTGTTTGCTTTTGTATAATTTCAGCATGAACTTCTaGTATGCCATTAACAGCATA +
Preference number: 2 (lower is better)
Translates to: DTQHPSHRVVYKCLLLYNFSMNF*YAINSI
Trigger: TATGCTGTTAATGGCATAGCAGAAGTTCATGCTGAA...ATTATACAAAAGCAAACACTTGTATACTACTCGGTGGGAAGGATGCTGTGTATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR-3UTR CCA 90 bp TTGGCCAAAATATTAGCCTGGGAAAAATTACCATCATACACCTTGATTGACAGATATCTGACATTCCATTaGTGTGTCCCTTGTGCATAT +
Preference number: 2 (lower is better)
Translates to: LAKILAWEKLPSYTLIDRYLTFH*CVPCAY
Trigger: ATATGCACAAGGGACACACCAATGGAATGTCAGATA...TCTGTCAATCAAGGTGTATGATGGTAATTTTTCCCAGGCTAATATTTTGGCCAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR-3UTR CCA 90 bp TGCCAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTTACCTGCCAGTCTTATaGCAACTTCTTTGTTTTACT +
Preference number: 2 (lower is better)
Translates to: CQLMEEAPIKNSNGMRRIYLPVL*QLLCFT
Trigger: AGTAAAACAAAGAAGTTGCCATAAGACTGGCAGGTA...AATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTGGCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR-3UTR CCA 90 bp GATACACAGCATCCTTCCCACCGAGTAGTATACAAGTGTTTGCTTTTGTATAATTACCTGCCAGTCTTATaGCAACTTCTTTGTTTTACT +
Preference number: 2 (lower is better)
Translates to: DTQHPSHRVVYKCLLLYNYLPVL*QLLCFT
Trigger: AGTAAAACAAAGAAGTTGCCATAAGACTGGCAGGTA...ATTATACAAAAGCAAACACTTGTATACTACTCGGTGGGAAGGATGCTGTGTATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR-3UTR GCA 90 bp TTGGCCAAAATATTAGCCTGGGAAAAATTACCATCATACACCTTGATTGACAGATTCAGCATGAACTTCTaGTATGCCATTAACAGCATA +
Preference number: 2 (lower is better)
Translates to: LAKILAWEKLPSYTLIDRFSMNF*YAINSI
Trigger: TATGCTGTTAATGGCATAGCAGAAGTTCATGCTGAA...TCTGTCAATCAAGGTGTATGATGGTAATTTTTCCCAGGCTAATATTTTGGCCAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR CAA 90 bp TCACCTTGGTGGAATTCTGTTCATTCTAGCTTGGGAATTTTACCCTaGTCTTTGTTTATATGGATGAAATACAAATGTCTCATGCATCTA +
Preference number: 2 (lower is better)
Translates to: SPWWNSVHSSLGILP*SLFIWMKYKCLMHL
Trigger: TAGATGCATGAGACATTTGTATTTCATCCATATAAACAAAGACAAGGGTAAAATTCCCAAGCTAGAATGAACAGAATTCCACCAAGGTGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR CAA 90 bp ATTGAAAGTCAAGCCTCACCTTGGTGGAATTCTGTTCATTCTAGCTaGGGAATTTTACCCTTGTCTTTGTTTATATGGATGAAATACAAA +
Preference number: 2 (lower is better)
Translates to: IESQASPWWNSVHSS*GILPLSLFIWMKYK
Trigger: TTTGTATTTCATCCATATAAACAAAGACAAGGGTAAAATTCCCAAGCTAGAATGAACAGAATTCCACCAAGGTGAGGCTTGACTTTCAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR-3UTR CCA 90 bp TTGGCCAAAATATTAGCCTGGGAAAAATTACCATCATACACCTTGATTGACAGAGTACTTAAGCAAATATaGTCTACACAATTAAAGGGC +
Preference number: 2 (lower is better)
Translates to: LAKILAWEKLPSYTLIDRVLKQI*STQLKG
Trigger: GCCCTTTAATTGTGTAGACCATATTTGCTTAAGTAC...TCTGTCAATCAAGGTGTATGATGGTAATTTTTCCCAGGCTAATATTTTGGCCAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR GCA 72 bp TGCTGGAGAGATGGCTCAGTGCTTAAGAGCACTATCTaGTCTTCCAGGGGACCTGGGTTCAAATCCCAGTAC +
Preference number: 3 (lower is better)
Translates to: CWRDGSVLKSTI*SSRGPGFKSQY
Trigger: GTACTGGGATTTGAACCCAGGTCCCCTGGAAGAGCAGATAGTGCTCTTAAGCACTGAGCCATCTCTCCAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR-3UTR CAA 90 bp GAATGGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCACAGTACTTTCCTGTTaGGTGTTCCACATGCCTAAC +
Preference number: 3 (lower is better)
Translates to: EWYCWGILTPCKTVNERSTVLSC*VFHMPN
Trigger: GTTAGGCATGTGGAACACCAAACAGGAAAGTACTGT...GCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACCATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR-3UTR CAA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGCAAACCCTCCAGCTGTaGACTCTCCTAGGTTCTGCA +
Preference number: 3 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLQTLQL*TLLGSA
Trigger: TGCAGAACCTAGGAGAGTCAACAGCTGGAGGGTTTG...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR GCA 72 bp TCCCGAAACTCTGATGCCTGTAAAGCCAGCACCATCTaGCCAACTCTCTGTATCCTTTCTGGATGTTCATAT +
Preference number: 3 (lower is better)
Translates to: SRNSDACKASTI*PTLCILSGCSY
Trigger: ATATGAACATCCAGAAAGGATACAGAGAGTTGGGCAGATGGTGCTGGCTTTACAGGCATCAGAGTTTCGGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR TCA 72 bp ACTCTCCTAGGTTCTGCACCTACATTGTTCCTCTACTaGGATCTCATGAGTAAATTCAAGAGACCCTCAGCG +
Preference number: 3 (lower is better)
Translates to: TLLGSAPTLFLY*DLMSKFKRPSA
Trigger: CGCTGAGGGTCTCTTGAATTTACTCATGAGATCTCAGTAGAGGAACAATGTAGGTGCAGAACCTAGGAGAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR TCA 72 bp TATCTTTATTTCACCCAAGGACCACGGATGTGGTCGTaGTACACAGCATCCTTCCCACCGAGTAGTATACAA +
Preference number: 3 (lower is better)
Translates to: YLYFTQGPRMWS*YTASFPPSSIQ
Trigger: TTGTATACTACTCGGTGGGAAGGATGCTGTGTATCACGACCACATCCGTGGTCCTTGGGTGAAATAAAGATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR CCA 72 bp AAACACAGGTGGAACAGACCCAACCTGATGAAAGTATaGCACATTCCCAGTGAGTTGCTGACCAATATGACT +
Preference number: 3 (lower is better)
Translates to: KHRWNRPNLMKV*HIPSELLTNMT
Trigger: AGTCATATTGGTCAGCAACTCACTGGGAATGTGCCATACTTTCATCAGGTTGGGTCTGTTCCACCTGTGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR CCA 72 bp TTGGGGACATGTATCAAGGATTATGCTTTTAGGTGCTaGAGAGATGGCTCAGTGCTTAAGAGCACTATCTGC +
Preference number: 3 (lower is better)
Translates to: LGTCIKDYAFRC*RDGSVLKSTIC
Trigger: GCAGATAGTGCTCTTAAGCACTGAGCCATCTCTCCAGCACCTAAAAGCATAATCCTTGATACATGTCCCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR CCA 72 bp ATGGTCACTGGCTTAGAATTCCAGACTCATGGTGGGTaGCTAATGGCAAGAGTTCACAATTACAAGCTAGGA +
Preference number: 3 (lower is better)
Translates to: MVTGLEFQTHGG*LMARVHNYKLG
Trigger: TCCTAGCTTGTAATTGTGAACTCTTGCCATTAGCCACCCACCATGAGTCTGGAATTCTAAGCCAGTGACCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR-3UTR CAA 90 bp ATGCACATCGTGCTAAAAATATCCAGTCTCCTTGATCCCCACGACTTAGTACTGACAGTACTTTCCTGTTaGGTGTTCCACATGCCTAAC +
Preference number: 3 (lower is better)
Translates to: MHIVLKISSLLDPHDLVLTVLSC*VFHMPN
Trigger: GTTAGGCATGTGGAACACCAAACAGGAAAGTACTGT...CAGTACTAAGTCGTGGGGATCAAGGAGACTGGATATTTTTAGCACGATGTGCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR-3UTR CAA 90 bp GTTCCAGGTTCTAAGGTAGTACTAAAGTTCCCAGAGTCTCCCTCCATGCAGAGTTTTAGTTTCTGCCAATaGATGGAGGAAGCTCCTATT +
Preference number: 3 (lower is better)
Translates to: VPGSKVVLKFPESPSMQSFSFCQ*MEEAPI
Trigger: AATAGGAGCTTCCTCCATCAATTGGCAGAAACTAAA...ACTCTGCATGGAGGGAGACTCTGGGAACTTTAGTACTACCTTAGAACCTGGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR-3UTR CAA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGATCAGAATGGTACTGTaGGGGCATCCTTACACCTTG +
Preference number: 3 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLIRMVL*GHPYTL
Trigger: CAAGGTGTAAGGATGCCCCAACAGTACCATTCTGAT...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR TCA 72 bp CAGACCCAACCTGATGAAAGTATGGCACATTCCCAGTaGGTTGCTGACCAATATGACTTTAGAGAAGGAATG +
Preference number: 3 (lower is better)
Translates to: QTQPDESMAHSQ*VADQYDFREGM
Trigger: CATTCCTTCTCTAAAGTCATATTGGTCAGCAACTCACTGGGAATGTGCCATACTTTCATCAGGTTGGGTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR GCA 72 bp ACTAAAGTTCCCAGAGTCTCCCTCCATGCAGAGTTCTaGAGTTGCCTATATGTCTTCCAAAATCGAACTGTT +
Preference number: 3 (lower is better)
Translates to: TKVPRVSLHAEF*SCLYVFQNRTV
Trigger: AACAGTTCGATTTTGGAAGACATATAGGCAACTGCAGAACTCTGCATGGAGGGAGACTCTGGGAACTTTAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR GCA 72 bp CATTTGGGGACATGTATCAAGGATTATGCTTTTAGGTaGTGGAGAGATGGCTCAGTGCTTAAGAGCACTATC +
Preference number: 3 (lower is better)
Translates to: HLGTCIKDYAFR*WRDGSVLKSTI
Trigger: GATAGTGCTCTTAAGCACTGAGCCATCTCTCCAGCACCTAAAAGCATAATCCTTGATACATGTCCCCAAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR-3UTR CAA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGACAGTACTTTCCTGTTaGGTGTTCCACATGCCTAAC +
Preference number: 3 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLTVLSC*VFHMPN
Trigger: GTTAGGCATGTGGAACACCAAACAGGAAAGTACTGT...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR-3UTR CAA 90 bp GAGAAGGCACTTAAGCACCACAGGTGGATTTTCCAGTTTGTATTTTCTGTAGTGGATCAGCATGTGCTCTaGAGGTCCATCTCATTGTTT +
Preference number: 3 (lower is better)
Translates to: EKALKHHRWIFQFVFSVVDQHVL*RSISLF
Trigger: AAACAATGAGATGGACCTCAAGAGCACATGCTGATC...CACTACAGAAAATACAAACTGGAAAATCCACCTGTGGTGCTTAAGTGCCTTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR TCA 72 bp TATCATGCACATCGTGCTAAAAATATCCAGTCTCCTTaGTCCCCACGACTTAGTACTGACAGCACTTATGTG +
Preference number: 3 (lower is better)
Translates to: YHAHRAKNIQSP*SPRLSTDSTYV
Trigger: CACATAAGTGCTGTCAGTACTAAGTCGTGGGGATCAAGGAGACTGGATATTTTTAGCACGATGTGCATGATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR GCA 72 bp CTGCCCAACTCTCTGTATCCTTTCTGGATGTTCATATaGATCCAGTACAACTGTACCAACAGACAAAATCAC +
Preference number: 3 (lower is better)
Translates to: LPNSLYPFWMFI*IQYNCTNRQNH
Trigger: GTGATTTTGTCTGTTGGTACAGTTGTACTGGATGCATATGAACATCCAGAAAGGATACAGAGAGTTGGGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR GCA 72 bp GTACCATGCCCGTTGTCTAACATGTTAGGCATCATTTaGCGAAGAAATAGAGGAATATGGGCATTGCTTACT +
Preference number: 3 (lower is better)
Translates to: VPCPLSNMLGII*RRNRGIWALLT
Trigger: AGTAAGCAATGCCCATATTCCTCTATTTCTTCGGCAAATGATGCCTAACATGTTAGACAACGGGCATGGTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR-3UTR CAA 90 bp TTGGCCAAAATATTAGCCTGGGAAAAATTACCATCATACACCTTGATTGACAGAAGGAGACATGTCATTTaGGAGAGGAAGGCTGCTCTT +
Preference number: 3 (lower is better)
Translates to: LAKILAWEKLPSYTLIDRRRHVI*ERKAAL
Trigger: AAGAGCAGCCTTCCTCTCCAAAATGACATGTCTCCT...TCTGTCAATCAAGGTGTATGATGGTAATTTTTCCCAGGCTAATATTTTGGCCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR TCA 72 bp GTAGCACTAGCTGGCCATATAGACATAAGTTGGCCTTaGACTCGTAAAAATATGTCTTCCTTTGCATCTGAA +
Preference number: 3 (lower is better)
Translates to: VALAGHIDISWP*TRKNMSSFASE
Trigger: TTCAGATGCAAAGGAAGACATATTTTTACGAGTTCAAGGCCAACTTATGTCTATATGGCCAGCTAGTGCTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR TCA 72 bp CAACGTCAGTGTTTTTCGATGACAATACGGAAATATTaGAAGTCAAGCCTCACCTTGGTGGAATTCTGTTCA +
Preference number: 3 (lower is better)
Translates to: QRQCFSMTIRKY*KSSLTLVEFCS
Trigger: TGAACAGAATTCCACCAAGGTGAGGCTTGACTTTCAATATTTCCGTATTGTCATCGAAAAACACTGACGTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR-3UTR CAA 90 bp GTAACACTCTTACATGTATATTACATATCCATAGCAACCTCCAGACAACGTCAGAGACTACTCGGGATTTaGAAGACTTTGCTTATGAGA +
Preference number: 3 (lower is better)
Translates to: VTLLHVYYISIATSRQRQRLLGI*KTLLMR
Trigger: TCTCATAAGCAAAGTCTTCAAAATCCCGAGTAGTCT...CTGACGTTGTCTGGAGGTTGCTATGGATATGTAATATACATGTAAGAGTGTTAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR-3UTR CAA 90 bp GTAACACTCTTACATGTATATTACATATCCATAGCAACCTCCAGACAACGTCAGTCAGCTGCTGAGTTTTaGTACTTGGCAACTTACAAA +
Preference number: 3 (lower is better)
Translates to: VTLLHVYYISIATSRQRQSAAEF*YLATYK
Trigger: TTTGTAAGTTGCCAAGTACAAAAACTCAGCAGCTGA...CTGACGTTGTCTGGAGGTTGCTATGGATATGTAATATACATGTAAGAGTGTTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR TCA 72 bp ATTAAAGGGCTCCAAATGAAAACTGGCGAAATTATCTaGCATTCCATTGGTGTGTCCCTTGTGCATATTCAT +
Preference number: 3 (lower is better)
Translates to: IKGLQMKTGEII*HSIGVSLVHIH
Trigger: ATGAATATGCACAAGGGACACACCAATGGAATGTCAGATAATTTCGCCAGTTTTCATTTGGAGCCCTTTAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR GCA 72 bp TTCTTTGTTTTACTGGCAATTTTCAGCATGAACTTCTaGTATGCCATTAACAGCATAGGTGTCCTGTGTACT +
Preference number: 3 (lower is better)
Translates to: FFVLLAIFSMNF*YAINSIGVLCT
Trigger: AGTACACAGGACACCTATGCTGTTAATGGCATAGCAGAAGTTCATGCTGAAAATTGCCAGTAAAACAAAGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR GCA 72 bp GAGCTTGGGCTTGCTGCTTTTCAGAGGATTAACTTCTaGCTAAGTTGTACATATTTAGAGGATATAAAGGTA +
Preference number: 3 (lower is better)
Translates to: ELGLAAFQRINF*LSCTYLEDIKV
Trigger: TACCTTTATATCCTCTAAATATGTACAACTTAGGCAGAAGTTAATCCTCTGAAAAGCAGCAAGCCCAAGCTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR CCA 72 bp CTCGTAAAAATATGTCTTCCTTTGCATCTGAAGTACTaGAATGAAAGGTATATACCACCACCTTTGGTTCTG +
Preference number: 3 (lower is better)
Translates to: LVKICLPLHLKY*NERYIPPPLVL
Trigger: CAGAACCAAAGGTGGTGGTATATACCTTTCATTCCAGTACTTCAGATGCAAAGGAAGACATATTTTTACGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR CCA 72 bp ATGTTAGGCATCATTTGCCGAAGAAATAGAGGAATATaGGCATTGCTTACTAAAGAAATGAGTGGCTTAGAC +
Preference number: 3 (lower is better)
Translates to: MLGIICRRNRGI*ALLTKEMSGLD
Trigger: GTCTAAGCCACTCATTTCTTTAGTAAGCAATGCCCATATTCCTCTATTTCTTCGGCAAATGATGCCTAACAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR TCA 72 bp AAGCAAATATGGTCTACACAATTAAAGGGCTCCAAATaGAAACTGGCGAAATTATCTGACATTCCATTGGTG +
Preference number: 3 (lower is better)
Translates to: KQIWSTQLKGSK*KLAKLSDIPLV
Trigger: CACCAATGGAATGTCAGATAATTTCGCCAGTTTTCATTTGGAGCCCTTTAATTGTGTAGACCATATTTGCTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR GCA 72 bp ATTCAGACACAGTACTTTCCTGTTTGGTGTTCCACATaGCTAACTCCGTTAAGTAACTTAAATCTTCAACAA +
Preference number: 3 (lower is better)
Translates to: IQTQYFPVWCST*LTPLSNLNLQQ
Trigger: TTGTTGAAGATTTAAGTTACTTAACGGAGTTAGGCATGTGGAACACCAAACAGGAAAGTACTGTGTCTGAAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR CCA 72 bp ATTACTGGTAAACAACAGGGGATTCAGAGATTCCTGTaGTCTTCGAGAATTCATTTGAAATTGCACATATGT +
Preference number: 3 (lower is better)
Translates to: ITGKQQGIQRFL*SSRIHLKLHIC
Trigger: ACATATGTGCAATTTCAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGTAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR-3UTR CAA 90 bp TTGGCCAAAATATTAGCCTGGGAAAAATTACCATCATACACCTTGATTGACAGACACTCACAGTACATTTaGCTGTCACCTTTATTTCTA +
Preference number: 3 (lower is better)
Translates to: LAKILAWEKLPSYTLIDRHSQYI*LSPLFL
Trigger: TAGAAATAAAGGTGACAGCAAAATGTACTGTGAGTG...TCTGTCAATCAAGGTGTATGATGGTAATTTTTCCCAGGCTAATATTTTGGCCAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACGGTCGTTGGTGGTCGTaGGCTGAGGGCTGCACCTCC +
Preference number: 4 (lower is better)
Translates to: GTVGASLHLARLLTKGANGRWWS*AEGCTS
Trigger: GGAGGTGCAGCCCTCAGCGCACGACCACCAACGACC...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp GTTCCAGGTTCTAAGGTAGTACTAAAGTTCCCAGAGTCTCCCTCCATGCAGAGTGGTCGTTGGTGGTCGTaGGCTGAGGGCTGCACCTCC +
Preference number: 4 (lower is better)
Translates to: VPGSKVVLKFPESPSMQSGRWWS*AEGCTS
Trigger: GGAGGTGCAGCCCTCAGCGCACGACCACCAACGACC...ACTCTGCATGGAGGGAGACTCTGGGAACTTTAGTACTACCTTAGAACCTGGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACCATGGGTTAGGTCGTTaGTGGTCGTGCGCTGAGGGC +
Preference number: 4 (lower is better)
Translates to: GTVGASLHLARLLTKGANHGLGR*WSCAEG
Trigger: GCCCTCAGCGCACGACCACCAACGACCTAACCCATG...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GTTCCAGGTTCTAAGGTAGTACTAAAGTTCCCAGAGTCTCCCTCCATGCAGAGTCATGGGTTAGGTCGTTaGTGGTCGTGCGCTGAGGGC +
Preference number: 4 (lower is better)
Translates to: VPGSKVVLKFPESPSMQSHGLGR*WSCAEG
Trigger: GCCCTCAGCGCACGACCACCAACGACCTAACCCATG...ACTCTGCATGGAGGGAGACTCTGGGAACTTTAGTACTACCTTAGAACCTGGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACGTTCGAGTGAAGGTCTaGTGTGGCCACAGCAGGTGC +
Preference number: 4 (lower is better)
Translates to: GTVGASLHLARLLTKGANVRVKV*CGHSRC
Trigger: GCACCTGCTGTGGCCACAGCAGACCTTCACTCGAAC...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGGGTCGTTGGTGGTCGTaGGCTGAGGGCTGCACCTCC +
Preference number: 4 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLGRWWS*AEGCTS
Trigger: GGAGGTGCAGCCCTCAGCGCACGACCACCAACGACC...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACCAAGCAGAGAGTCAATaGGGCACCGGATCCCCTGTG +
Preference number: 4 (lower is better)
Translates to: GTVGASLHLARLLTKGANQAESQ*GTGSPV
Trigger: CACAGGGGATCCGGTGCCCCATTGACTCTCTGCTTG...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACGTCCATCTTAGGGCCTaGATGAGGTCAAGGAGCCCG +
Preference number: 4 (lower is better)
Translates to: GTVGASLHLARLLTKGANVHLRA*MRSRSP
Trigger: CGGGCTCCTTGACCTCATCCAGGCCCTAAGATGGAC...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp GAATGGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCGAGCCAAAGTTCGAGTaGAGGTCTGCTGTGGCCACA +
Preference number: 4 (lower is better)
Translates to: EWYCWGILTPCKTVNERSEPKFE*RSAVAT
Trigger: TGTGGCCACAGCAGACCTTCACTCGAACTTTGGCTC...GCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACCATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp GAATGGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCCAGCCTGATCCCCTGTaGTCAAGAAGCCAAGTACCC +
Preference number: 4 (lower is better)
Translates to: EWYCWGILTPCKTVNERSQPDPL*SRSQVP
Trigger: GGGTACTTGGCTTCTTGAGCACAGGGGATCAGGCTG...GCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACCATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GAATGGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAGACCAGGGAGATGGTaGTTCTGGAGGCTGGAAACG +
Preference number: 4 (lower is better)
Translates to: EWYCWGILTPCKTVNERSRPGRW*FWRLET
Trigger: CGTTTCCAGCCTCCAGAACCACCATCTCCCTGGTCT...GCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACCATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GAATGGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCACACCATCACTGGTTTaGGACCCCCACTGTCCCGAA +
Preference number: 4 (lower is better)
Translates to: EWYCWGILTPCKTVNERSTPSLV*DPHCPE
Trigger: TTCGGGACAGTGGGGGTCCCAAACCAGTGATGGTGT...GCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACCATTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GTTCTTTTTGTTCACTGTCAGTGGCAACACATTCTCGTAAGTATGAGCTCGTCAGGGTTAGGTCGTTGGTaGTCGTGCGCTGAGGGCTGC +
Preference number: 4 (lower is better)
Translates to: VLFVHCQWQHILVSMSSSGLGRW*SCAEGC
Trigger: GCAGCCCTCAGCGCACGACCACCAACGACCTAACCC...TGACGAGCTCATACTTACGAGAATGTGTTGCCACTGACAGTGAACAAAAAGAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp GAATGGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCTTTCCTTTGGCAGCCTaGTCCCCTGTGCTCAAGAAG +
Preference number: 4 (lower is better)
Translates to: EWYCWGILTPCKTVNERSFPLAA*SPVLKK
Trigger: CTTCTTGAGCACAGGGGATCAGGCTGCCAAAGGAAA...GCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACCATTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACTTTCCTTTGGCAGCCTaGTCCCCTGTGCTCAAGAAG +
Preference number: 4 (lower is better)
Translates to: GTVGASLHLARLLTKGANFPLAA*SPVLKK
Trigger: CTTCTTGAGCACAGGGGATCAGGCTGCCAAAGGAAA...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACCTGATCCAAACACAGTaGTTCGCAAGGGGTCACCAC +
Preference number: 4 (lower is better)
Translates to: GTVGASLHLARLLTKGANLIQTQ*FARGHH
Trigger: GTGGTGACCCCTTGCGAATCACTGTGTTTGGATCAG...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp GAATGGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCGCAGGTGCTACCCATTaGTGGTCCGTAAACAAAGCC +
Preference number: 4 (lower is better)
Translates to: EWYCWGILTPCKTVNERSAGATH*WSVNKA
Trigger: GGCTTTGTTTACGGACCATCAATGGGTAGCACCTGC...GCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACCATTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACGCAGGTGCTACCCATTaGTGGTCCGTAAACAAAGCC +
Preference number: 4 (lower is better)
Translates to: GTVGASLHLARLLTKGANAGATH*WSVNKA
Trigger: GGCTTTGTTTACGGACCATCAATGGGTAGCACCTGC...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACGGCAGTGGGAAAGGCTaGTGTGACTGGTGTGGAATT +
Preference number: 4 (lower is better)
Translates to: GTVGASLHLARLLTKGANGSGKG*CDWCGI
Trigger: AATTCCACACCAGTCACATCAGCCTTTCCCACTGCC...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp ATGCACATCGTGCTAAAAATATCCAGTCTCCTTGATCCCCACGACTTAGTACTGGTTCGAGTGAAGGTCTaGTGTGGCCACAGCAGGTGC +
Preference number: 4 (lower is better)
Translates to: MHIVLKISSLLDPHDLVLVRVKV*CGHSRC
Trigger: GCACCTGCTGTGGCCACAGCAGACCTTCACTCGAAC...CAGTACTAAGTCGTGGGGATCAAGGAGACTGGATATTTTTAGCACGATGTGCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGTCGTGCGCTGAGGGCTaGACCTCCGGTGGACATCAT +
Preference number: 4 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLSCAEG*TSGGHH
Trigger: ATGATGTCCACCGGAGGTGCAGCCCTCAGCGCACGA...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACGGGAGATGGTGGTTCTaGAGGCTGGAAACGATGTTC +
Preference number: 4 (lower is better)
Translates to: GTVGASLHLARLLTKGANGRWWF*RLETMF
Trigger: GAACATCGTTTCCAGCCTCCAGAACCACCATCTCCC...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACACCCAATGTTCTCGCTaGTCCATCTTAGGGCCTGGA +
Preference number: 4 (lower is better)
Translates to: GTVGASLHLARLLTKGANTQCSR*SILGPG
Trigger: TCCAGGCCCTAAGATGGACCAGCGAGAACATTGGGT...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GTTCCAGGTTCTAAGGTAGTACTAAAGTTCCCAGAGTCTCCCTCCATGCAGAGTACCCAATGTTCTCGCTaGTCCATCTTAGGGCCTGGA +
Preference number: 4 (lower is better)
Translates to: VPGSKVVLKFPESPSMQSTQCSR*SILGPG
Trigger: TCCAGGCCCTAAGATGGACCAGCGAGAACATTGGGT...ACTCTGCATGGAGGGAGACTCTGGGAACTTTAGTACTACCTTAGAACCTGGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp TGCAAGACTGTTAACGAAAGGAGCAAACTTCAGAGTAACAAACCCACAGCAAATGGGTTAGGTCGTTGGTaGTCGTGCGCTGAGGGCTGC +
Preference number: 4 (lower is better)
Translates to: CKTVNERSKLQSNKPTANGLGRW*SCAEGC
Trigger: GCAGCCCTCAGCGCACGACCACCAACGACCTAACCC...ATTTGCTGTGGGTTTGTTACTCTGAAGTTTGCTCCTTTCGTTAACAGTCTTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp AATTACGGCTTAACCAGCAGCACAGCCACCAAGCATATAAATTATCATGCACATGGGTTAGGTCGTTGGTaGTCGTGCGCTGAGGGCTGC +
Preference number: 4 (lower is better)
Translates to: NYGLTSSTATKHINYHAHGLGRW*SCAEGC
Trigger: GCAGCCCTCAGCGCACGACCACCAACGACCTAACCC...ATGTGCATGATAATTTATATGCTTGGTGGCTGTGCTGCTGGTTAAGCCGTAATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp GAATGGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCATGGACTCACACTCGTaGTCCAAGTCAGTGTGCTTC +
Preference number: 4 (lower is better)
Translates to: EWYCWGILTPCKTVNERSMDSHS*SKSVCF
Trigger: GAAGCACACTGACTTGGATCACGAGTGTGAGTCCAT...GCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACCATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACACGATGTTCTCCTGTTaGTGGAGCGGCATATGGAAC +
Preference number: 4 (lower is better)
Translates to: GTVGASLHLARLLTKGANTMFSC*WSGIWN
Trigger: GTTCCATATGCCGCTCCACCAACAGGAGAACATCGT...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GAGAAGGCACTTAAGCACCACAGGTGGATTTTCCAGTTTGTATTTTCTGTAGTGGTCCATCTTAGGGCCTaGATGAGGTCAAGGAGCCCG +
Preference number: 4 (lower is better)
Translates to: EKALKHHRWIFQFVFSVVVHLRA*MRSRSP
Trigger: CGGGCTCCTTGACCTCATCCAGGCCCTAAGATGGAC...CACTACAGAAAATACAAACTGGAAAATCCACCTGTGGTGCTTAAGTGCCTTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp ATGCACATCGTGCTAAAAATATCCAGTCTCCTTGATCCCCACGACTTAGTACTGGGGCTGCACCTCCGGTaGACATCATGTCTCCTCTTA +
Preference number: 4 (lower is better)
Translates to: MHIVLKISSLLDPHDLVLGLHLR*TSCLLL
Trigger: TAAGAGGAGACATGATGTCCACCGGAGGTGCAGCCC...CAGTACTAAGTCGTGGGGATCAAGGAGACTGGATATTTTTAGCACGATGTGCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp ATTACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATCATGGGTTAGGTCGTTaGTGGTCGTGCGCTGAGGGC +
Preference number: 4 (lower is better)
Translates to: ITGKQQGIQRFLWSSRIHHGLGR*WSCAEG
Trigger: GCCCTCAGCGCACGACCACCAACGACCTAACCCATG...ATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGTAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GAATGGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCCCTCATGTGGATGGATaGACTCACACTCGTGATCCA +
Preference number: 4 (lower is better)
Translates to: EWYCWGILTPCKTVNERSPHVDG*THTRDP
Trigger: TGGATCACGAGTGTGAGTCCATCCATCCACATGAGG...GCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACCATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GTTCCAGGTTCTAAGGTAGTACTAAAGTTCCCAGAGTCTCCCTCCATGCAGAGTCCTCATGTGGATGGATaGACTCACACTCGTGATCCA +
Preference number: 4 (lower is better)
Translates to: VPGSKVVLKFPESPSMQSPHVDG*THTRDP
Trigger: TGGATCACGAGTGTGAGTCCATCCATCCACATGAGG...ACTCTGCATGGAGGGAGACTCTGGGAACTTTAGTACTACCTTAGAACCTGGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp ATGCACATCGTGCTAAAAATATCCAGTCTCCTTGATCCCCACGACTTAGTACTGCTGATCCAAACACAGTaGTTCGCAAGGGGTCACCAC +
Preference number: 4 (lower is better)
Translates to: MHIVLKISSLLDPHDLVLLIQTQ*FARGHH
Trigger: GTGGTGACCCCTTGCGAATCACTGTGTTTGGATCAG...CAGTACTAAGTCGTGGGGATCAAGGAGACTGGATATTTTTAGCACGATGTGCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp ATGCACATCGTGCTAAAAATATCCAGTCTCCTTGATCCCCACGACTTAGTACTGATAAAGTCAGCAGGTTaGCACATGAACCCCCAGCGC +
Preference number: 4 (lower is better)
Translates to: MHIVLKISSLLDPHDLVLIKSAG*HMNPQR
Trigger: GCGCTGGGGGTTCATGTGTCAACCTGCTGACTTTAT...CAGTACTAAGTCGTGGGGATCAAGGAGACTGGATATTTTTAGCACGATGTGCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp AATTACGGCTTAACCAGCAGCACAGCCACCAAGCATATAAATTATCATGCACATGGAACCTCATCCCCATaGGCTGCATCAGCCCAAGCT +
Preference number: 4 (lower is better)
Translates to: NYGLTSSTATKHINYHAHGTSSP*AASAQA
Trigger: AGCTTGGGCTGATGCAGCTCATGGGGATGAGGTTCC...ATGTGCATGATAATTTATATGCTTGGTGGCTGTGCTGCTGGTTAAGCCGTAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp TTCTCCATATTATCTTTATTTCACCCAAGGACCACGGATGTGGTCGTGATACACCAGCCTGATCCCCTGTaGTCAAGAAGCCAAGTACCC +
Preference number: 4 (lower is better)
Translates to: FSILSLFHPRTTDVVVIHQPDPL*SRSQVP
Trigger: GGGTACTTGGCTTCTTGAGCACAGGGGATCAGGCTG...GTGTATCACGACCACATCCGTGGTCCTTGGGTGAAATAAAGATAATATGGAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp ATTACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATGTTCGAGTGAAGGTCTaGTGTGGCCACAGCAGGTGC +
Preference number: 4 (lower is better)
Translates to: ITGKQQGIQRFLWSSRIHVRVKV*CGHSRC
Trigger: GCACCTGCTGTGGCCACAGCAGACCTTCACTCGAAC...ATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGTAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACAAGGGGCTTGGTTGTTaGTTGGGATCATCCTGTTTG +
Preference number: 4 (lower is better)
Translates to: GTVGASLHLARLLTKGANKGLGC*LGSSCL
Trigger: CAAACAGGATGATCCCAAGCAACAACCAAGCCCCTT...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp GAATGGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAGGGGCTTGGTTGTTaGTTGGGATCATCCTGTTTG +
Preference number: 4 (lower is better)
Translates to: EWYCWGILTPCKTVNERSKGLGC*LGSSCL
Trigger: CAAACAGGATGATCCCAAGCAACAACCAAGCCCCTT...GCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACCATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp TGCCAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTTCGTGCGCTGAGGGCTaGACCTCCGGTGGACATCAT +
Preference number: 4 (lower is better)
Translates to: CQLMEEAPIKNSNGMRRISCAEG*TSGGHH
Trigger: ATGATGTCCACCGGAGGTGCAGCCCTCAGCGCACGA...AATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTGGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACTGGTGGAGCGGCATATaGAACCCCAAGAAACTGAAT +
Preference number: 4 (lower is better)
Translates to: GTVGASLHLARLLTKGANWWSGI*NPKKLN
Trigger: ATTCAGTTTCTTGGGGTTCCATATGCCGCTCCACCA...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp TTCTCCATATTATCTTTATTTCACCCAAGGACCACGGATGTGGTCGTGATACACACACCATCACTGGTTTaGGACCCCCACTGTCCCGAA +
Preference number: 4 (lower is better)
Translates to: FSILSLFHPRTTDVVVIHTPSLV*DPHCPE
Trigger: TTCGGGACAGTGGGGGTCCCAAACCAGTGATGGTGT...GTGTATCACGACCACATCCGTGGTCCTTGGGTGAAATAAAGATAATATGGAGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp ATGCACATCGTGCTAAAAATATCCAGTCTCCTTGATCCCCACGACTTAGTACTGGATGTACACCATCACTaGTTTGGGACCCCCACTGTC +
Preference number: 4 (lower is better)
Translates to: MHIVLKISSLLDPHDLVLDVHHH*FGTPTV
Trigger: GACAGTGGGGGTCCCAAACCAGTGATGGTGTACATC...CAGTACTAAGTCGTGGGGATCAAGGAGACTGGATATTTTTAGCACGATGTGCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp AATTACGGCTTAACCAGCAGCACAGCCACCAAGCATATAAATTATCATGCACATAGTGAAGGTCTGCTGTaGCCACAGCAGGTGCTACCC +
Preference number: 4 (lower is better)
Translates to: NYGLTSSTATKHINYHAHSEGLL*PQQVLP
Trigger: GGGTAGCACCTGCTGTGGCCACAGCAGACCTTCACT...ATGTGCATGATAATTTATATGCTTGGTGGCTGTGCTGCTGGTTAAGCCGTAATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACAAGAACCACCTCATGTaGATGGATGGACTCACACTC +
Preference number: 4 (lower is better)
Translates to: GTVGASLHLARLLTKGANKNHLM*MDGLTL
Trigger: GAGTGTGAGTCCATCCATCCACATGAGGTGGTTCTT...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp AATTACGGCTTAACCAGCAGCACAGCCACCAAGCATATAAATTATCATGCACATGAGCCAAAGTTCGAGTaGAGGTCTGCTGTGGCCACA +
Preference number: 4 (lower is better)
Translates to: NYGLTSSTATKHINYHAHEPKFE*RSAVAT
Trigger: TGTGGCCACAGCAGACCTTCACTCGAACTTTGGCTC...ATGTGCATGATAATTTATATGCTTGGTGGCTGTGCTGCTGGTTAAGCCGTAATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp TTCTCCATATTATCTTTATTTCACCCAAGGACCACGGATGTGGTCGTGATACACGGCAGTGGGAAAGGCTaGTGTGACTGGTGTGGAATT +
Preference number: 4 (lower is better)
Translates to: FSILSLFHPRTTDVVVIHGSGKG*CDWCGI
Trigger: AATTCCACACCAGTCACATCAGCCTTTCCCACTGCC...GTGTATCACGACCACATCCGTGGTCCTTGGGTGAAATAAAGATAATATGGAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGATGTTCTCCTGTTGGTaGAGCGGCATATGGAACCCC +
Preference number: 4 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLMFSCW*SGIWNP
Trigger: GGGGTTCCATATGCCGCTCCACCAACAGGAGAACAT...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp TTCTCCATATTATCTTTATTTCACCCAAGGACCACGGATGTGGTCGTGATACACATGTTCTCCTGTTGGTaGAGCGGCATATGGAACCCC +
Preference number: 4 (lower is better)
Translates to: FSILSLFHPRTTDVVVIHMFSCW*SGIWNP
Trigger: GGGGTTCCATATGCCGCTCCACCAACAGGAGAACAT...GTGTATCACGACCACATCCGTGGTCCTTGGGTGAAATAAAGATAATATGGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGGGGAGATGGTGGTTCTaGAGGCTGGAAACGATGTTC +
Preference number: 4 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLGRWWF*RLETMF
Trigger: GAACATCGTTTCCAGCCTCCAGAACCACCATCTCCC...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp ATTACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATAGACCAGGGAGATGGTaGTTCTGGAGGCTGGAAACG +
Preference number: 4 (lower is better)
Translates to: ITGKQQGIQRFLWSSRIHRPGRW*FWRLET
Trigger: CGTTTCCAGCCTCCAGAACCACCATCTCCCTGGTCT...ATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGTAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GATACACAGCATCCTTCCCACCGAGTAGTATACAAGTGTTTGCTTTTGTATAATGTCCATCTTAGGGCCTaGATGAGGTCAAGGAGCCCG +
Preference number: 4 (lower is better)
Translates to: DTQHPSHRVVYKCLLLYNVHLRA*MRSRSP
Trigger: CGGGCTCCTTGACCTCATCCAGGCCCTAAGATGGAC...ATTATACAAAAGCAAACACTTGTATACTACTCGGTGGGAAGGATGCTGTGTATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp ATGCACATCGTGCTAAAAATATCCAGTCTCCTTGATCCCCACGACTTAGTACTGGCGTATTTTGCAGGCTaGAAACTAACAGCCCAGCTG +
Preference number: 4 (lower is better)
Translates to: MHIVLKISSLLDPHDLVLAYFAG*KLTAQL
Trigger: CAGCTGGGCTGTTAGTTTCCAGCCTGCAAAATACGC...CAGTACTAAGTCGTGGGGATCAAGGAGACTGGATATTTTTAGCACGATGTGCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGCACCGAGAAGGGGCTTaGTTGTTGCTTGGGATCATC +
Preference number: 4 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLHREGA*LLLGII
Trigger: GATGATCCCAAGCAACAACCAAGCCCCTTCTCGGTG...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACCCCCAAGAAACTGAATaGCAGGACCCAAAATTTCAT +
Preference number: 4 (lower is better)
Translates to: GTVGASLHLARLLTKGANPQETE*QDPKFH
Trigger: ATGAAATTTTGGGTCCTGTCATTCAGTTTCTTGGGG...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp AATTACGGCTTAACCAGCAGCACAGCCACCAAGCATATAAATTATCATGCACATATAAAGTCAGCAGGTTaGCACATGAACCCCCAGCGC +
Preference number: 4 (lower is better)
Translates to: NYGLTSSTATKHINYHAHIKSAG*HMNPQR
Trigger: GCGCTGGGGGTTCATGTGTCAACCTGCTGACTTTAT...ATGTGCATGATAATTTATATGCTTGGTGGCTGTGCTGCTGGTTAAGCCGTAATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp TTCTCCATATTATCTTTATTTCACCCAAGGACCACGGATGTGGTCGTGATACACTTGAGATTATGCAGATaGGGTACCAGCTCCAGCCAG +
Preference number: 4 (lower is better)
Translates to: FSILSLFHPRTTDVVVIHLRLCR*GTSSSQ
Trigger: CTGGCTGGAGCTGGTACCTCATCTGCATAATCTCAA...GTGTATCACGACCACATCCGTGGTCCTTGGGTGAAATAAAGATAATATGGAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp AATTACGGCTTAACCAGCAGCACAGCCACCAAGCATATAAATTATCATGCACATGGCAGTGGGAAAGGCTaGTGTGACTGGTGTGGAATT +
Preference number: 4 (lower is better)
Translates to: NYGLTSSTATKHINYHAHGSGKG*CDWCGI
Trigger: AATTCCACACCAGTCACATCAGCCTTTCCCACTGCC...ATGTGCATGATAATTTATATGCTTGGTGGCTGTGCTGCTGGTTAAGCCGTAATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGATGGACTCACACTCGTaGTCCAAGTCAGTGTGCTTC +
Preference number: 4 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLMDSHS*SKSVCF
Trigger: GAAGCACACTGACTTGGATCACGAGTGTGAGTCCAT...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACAATGTATGTAAGGGCTaGATCCCTGGTATAGTGTTG +
Preference number: 4 (lower is better)
Translates to: GTVGASLHLARLLTKGANNVCKG*IPGIVL
Trigger: CAACACTATACCAGGGATTCAGCCCTTACATACATT...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp ATGCACATCGTGCTAAAAATATCCAGTCTCCTTGATCCCCACGACTTAGTACTGTGGTGGAGCGGCATATaGAACCCCAAGAAACTGAAT +
Preference number: 4 (lower is better)
Translates to: MHIVLKISSLLDPHDLVLWWSGI*NPKKLN
Trigger: ATTCAGTTTCTTGGGGTTCCATATGCCGCTCCACCA...CAGTACTAAGTCGTGGGGATCAAGGAGACTGGATATTTTTAGCACGATGTGCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp TTCTCCATATTATCTTTATTTCACCCAAGGACCACGGATGTGGTCGTGATACACACGATGTTCTCCTGTTaGTGGAGCGGCATATGGAAC +
Preference number: 4 (lower is better)
Translates to: FSILSLFHPRTTDVVVIHTMFSC*WSGIWN
Trigger: GTTCCATATGCCGCTCCACCAACAGGAGAACATCGT...GTGTATCACGACCACATCCGTGGTCCTTGGGTGAAATAAAGATAATATGGAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GTTCTTTTTGTTCACTGTCAGTGGCAACACATTCTCGTAAGTATGAGCTCGTCAACGATGTTCTCCTGTTaGTGGAGCGGCATATGGAAC +
Preference number: 4 (lower is better)
Translates to: VLFVHCQWQHILVSMSSSTMFSC*WSGIWN
Trigger: GTTCCATATGCCGCTCCACCAACAGGAGAACATCGT...TGACGAGCTCATACTTACGAGAATGTGTTGCCACTGACAGTGAACAAAAAGAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GATACACAGCATCCTTCCCACCGAGTAGTATACAAGTGTTTGCTTTTGTATAATAGACCAGGGAGATGGTaGTTCTGGAGGCTGGAAACG +
Preference number: 4 (lower is better)
Translates to: DTQHPSHRVVYKCLLLYNRPGRW*FWRLET
Trigger: CGTTTCCAGCCTCCAGAACCACCATCTCCCTGGTCT...ATTATACAAAAGCAAACACTTGTATACTACTCGGTGGGAAGGATGCTGTGTATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GTAACACTCTTACATGTATATTACATATCCATAGCAACCTCCAGACAACGTCAGACACCATCACTGGTTTaGGACCCCCACTGTCCCGAA +
Preference number: 4 (lower is better)
Translates to: VTLLHVYYISIATSRQRQTPSLV*DPHCPE
Trigger: TTCGGGACAGTGGGGGTCCCAAACCAGTGATGGTGT...CTGACGTTGTCTGGAGGTTGCTATGGATATGTAATATACATGTAAGAGTGTTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp TTCTCCATATTATCTTTATTTCACCCAAGGACCACGGATGTGGTCGTGATACACGCGTATTTTGCAGGCTaGAAACTAACAGCCCAGCTG +
Preference number: 4 (lower is better)
Translates to: FSILSLFHPRTTDVVVIHAYFAG*KLTAQL
Trigger: CAGCTGGGCTGTTAGTTTCCAGCCTGCAAAATACGC...GTGTATCACGACCACATCCGTGGTCCTTGGGTGAAATAAAGATAATATGGAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp ATGCACATCGTGCTAAAAATATCCAGTCTCCTTGATCCCCACGACTTAGTACTGTGCATCAGCCCAAGCTaGAACTTGATCTGTTTGGCA +
Preference number: 4 (lower is better)
Translates to: MHIVLKISSLLDPHDLVLCISPS*NLICLA
Trigger: TGCCAAACAGATCAAGTTCCAGCTTGGGCTGATGCA...CAGTACTAAGTCGTGGGGATCAAGGAGACTGGATATTTTTAGCACGATGTGCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGTGGGATCATCCTGTTTaGCAGTGGGAAAGGCTGATG +
Preference number: 4 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLWDHPV*QWERLM
Trigger: CATCAGCCTTTCCCACTGCCAAACAGGATGATCCCA...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp TTCTCCATATTATCTTTATTTCACCCAAGGACCACGGATGTGGTCGTGATACACTGGGATCATCCTGTTTaGCAGTGGGAAAGGCTGATG +
Preference number: 4 (lower is better)
Translates to: FSILSLFHPRTTDVVVIHWDHPV*QWERLM
Trigger: CATCAGCCTTTCCCACTGCCAAACAGGATGATCCCA...GTGTATCACGACCACATCCGTGGTCCTTGGGTGAAATAAAGATAATATGGAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGGGCTTGGTTGTTGCTTaGGATCATCCTGTTTGGCAG +
Preference number: 4 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLGLVVA*DHPVWQ
Trigger: CTGCCAAACAGGATGATCCCAAGCAACAACCAAGCC...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GTTCTTTTTGTTCACTGTCAGTGGCAACACATTCTCGTAAGTATGAGCTCGTCAGGCTTGGTTGTTGCTTaGGATCATCCTGTTTGGCAG +
Preference number: 4 (lower is better)
Translates to: VLFVHCQWQHILVSMSSSGLVVA*DHPVWQ
Trigger: CTGCCAAACAGGATGATCCCAAGCAACAACCAAGCC...TGACGAGCTCATACTTACGAGAATGTGTTGCCACTGACAGTGAACAAAAAGAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp AATTACGGCTTAACCAGCAGCACAGCCACCAAGCATATAAATTATCATGCACATCACCGAGAAGGGGCTTaGTTGTTGCTTGGGATCATC +
Preference number: 4 (lower is better)
Translates to: NYGLTSSTATKHINYHAHHREGA*LLLGII
Trigger: GATGATCCCAAGCAACAACCAAGCCCCTTCTCGGTG...ATGTGCATGATAATTTATATGCTTGGTGGCTGTGCTGCTGGTTAAGCCGTAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp TGCCAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTGGGCTGCACCTCCGGTaGACATCATGTCTCCTCTTA +
Preference number: 4 (lower is better)
Translates to: CQLMEEAPIKNSNGMRRIGLHLR*TSCLLL
Trigger: TAAGAGGAGACATGATGTCCACCGGAGGTGCAGCCC...AATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTGGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp TGCAAGACTGTTAACGAAAGGAGCAAACTTCAGAGTAACAAACCCACAGCAAATGGGTGTGGGTGGGGATaGGGCAGTGTATTATTCTGT +
Preference number: 4 (lower is better)
Translates to: CKTVNERSKLQSNKPTANGCGWG*GSVLFC
Trigger: ACAGAATAATACACTGCCCCATCCCCACCCACACCC...ATTTGCTGTGGGTTTGTTACTCTGAAGTTTGCTCCTTTCGTTAACAGTCTTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp ATTACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATGGGTGTGGGTGGGGATaGGGCAGTGTATTATTCTGT +
Preference number: 4 (lower is better)
Translates to: ITGKQQGIQRFLWSSRIHGCGWG*GSVLFC
Trigger: ACAGAATAATACACTGCCCCATCCCCACCCACACCC...ATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGTAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp TGCCAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTATAAAGTCAGCAGGTTaGCACATGAACCCCCAGCGC +
Preference number: 4 (lower is better)
Translates to: CQLMEEAPIKNSNGMRRIIKSAG*HMNPQR
Trigger: GCGCTGGGGGTTCATGTGTCAACCTGCTGACTTTAT...AATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTGGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp CAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTTTAGGAACCTCATCCCCATaGGCTGCATCAGCCCAAGCT +
Preference number: 4 (lower is better)
Translates to: QLMEEAPIKNSNGMRRILGTSSP*AASAQA
Trigger: AGCTTGGGCTGATGCAGCTCATGGGGATGAGGTTCC...TAAAATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp TGCAAGACTGTTAACGAAAGGAGCAAACTTCAGAGTAACAAACCCACAGCAAATATGGACTCACACTCGTaGTCCAAGTCAGTGTGCTTC +
Preference number: 4 (lower is better)
Translates to: CKTVNERSKLQSNKPTANMDSHS*SKSVCF
Trigger: GAAGCACACTGACTTGGATCACGAGTGTGAGTCCAT...ATTTGCTGTGGGTTTGTTACTCTGAAGTTTGCTCCTTTCGTTAACAGTCTTGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp ATGCACATCGTGCTAAAAATATCCAGTCTCCTTGATCCCCACGACTTAGTACTGCACATTGCCATAGCTTaGCAAGACACTCCCATCATA +
Preference number: 4 (lower is better)
Translates to: MHIVLKISSLLDPHDLVLHIAIA*QDTPII
Trigger: TATGATGGGAGTGTCTTGGCAAGCTATGGCAATGTG...CAGTACTAAGTCGTGGGGATCAAGGAGACTGGATATTTTTAGCACGATGTGCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp ATGCACATCGTGCTAAAAATATCCAGTCTCCTTGATCCCCACGACTTAGTACTGGTCCTTTGGTTGAATTaGTCCAACGGTTACCTTCAG +
Preference number: 4 (lower is better)
Translates to: MHIVLKISSLLDPHDLVLVLWLN*SNGYLQ
Trigger: CTGAAGGTAACCGTTGGAGCAATTCAACCAAAGGAC...CAGTACTAAGTCGTGGGGATCAAGGAGACTGGATATTTTTAGCACGATGTGCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075054.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACTCCACTCTGAGCTATTaGTCGTTGAAAAAGTCCTTT +
Preference number: 4 (lower is better)
Translates to: GTVGASLHLARLLTKGANSTLSY*SLKKSF
Trigger: AAAGGACTTTTTCAACGAGCAATAGCTCAGAGTGGA...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075054.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp GAATGGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCTCCACTCTGAGCTATTaGTCGTTGAAAAAGTCCTTT +
Preference number: 4 (lower is better)
Translates to: EWYCWGILTPCKTVNERSSTLSY*SLKKSF
Trigger: AAAGGACTTTTTCAACGAGCAATAGCTCAGAGTGGA...GCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACCATTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075054.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACAATTCTAGCGTATTTTaGAGGCTGGAAACTAACAGC +
Preference number: 4 (lower is better)
Translates to: GTVGASLHLARLLTKGANNSSVF*RLETNS
Trigger: GCTGTTAGTTTCCAGCCTGCAAAATACGCTAGAATT...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGAAGGGGCTTGGTTGTTaGTTGGGATCATCCTGTTTG +
Preference number: 4 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLKGLGC*LGSSCL
Trigger: CAAACAGGATGATCCCAAGCAACAACCAAGCCCCTT...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp CAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTTTACAAGCAGAGAGTCAATaGGGCACCGGATCCCCTGTG +
Preference number: 4 (lower is better)
Translates to: QLMEEAPIKNSNGMRRILQAESQ*GTGSPV
Trigger: CACAGGGGATCCGGTGCCCCATTGACTCTCTGCTTG...TAAAATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGTGGTGGAGCGGCATATaGAACCCCAAGAAACTGAAT +
Preference number: 4 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLWWSGI*NPKKLN
Trigger: ATTCAGTTTCTTGGGGTTCCATATGCCGCTCCACCA...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp TGCAAGACTGTTAACGAAAGGAGCAAACTTCAGAGTAACAAACCCACAGCAAATGGTGGTTCTGGAGGCTaGAAACGATGTTCTCCTGTT +
Preference number: 4 (lower is better)
Translates to: CKTVNERSKLQSNKPTANGGSGG*KRCSPV
Trigger: AACAGGAGAACATCGTTTCCAGCCTCCAGAACCACC...ATTTGCTGTGGGTTTGTTACTCTGAAGTTTGCTCCTTTCGTTAACAGTCTTGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GATACACAGCATCCTTCCCACCGAGTAGTATACAAGTGTTTGCTTTTGTATAATACCCAATGTTCTCGCTaGTCCATCTTAGGGCCTGGA +
Preference number: 4 (lower is better)
Translates to: DTQHPSHRVVYKCLLLYNTQCSR*SILGPG
Trigger: TCCAGGCCCTAAGATGGACCAGCGAGAACATTGGGT...ATTATACAAAAGCAAACACTTGTATACTACTCGGTGGGAAGGATGCTGTGTATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp AATTACGGCTTAACCAGCAGCACAGCCACCAAGCATATAAATTATCATGCACATCCTCATGTGGATGGATaGACTCACACTCGTGATCCA +
Preference number: 4 (lower is better)
Translates to: NYGLTSSTATKHINYHAHPHVDG*THTRDP
Trigger: TGGATCACGAGTGTGAGTCCATCCATCCACATGAGG...ATGTGCATGATAATTTATATGCTTGGTGGCTGTGCTGCTGGTTAAGCCGTAATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR CAA 72 bp AAATTGCACATATGTGAAAGACAAACCCTCCAGCTGTaGACTCTCCTAGGTTCTGCACCTACATTGTTCCTC +
Preference number: 4 (lower is better)
Translates to: KLHICERQTLQL*TLLGSAPTLFL
Trigger: GAGGAACAATGTAGGTGCAGAACCTAGGAGAGTCAACAGCTGGAGGGTTTGTCTTTCACATATGTGCAATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR CAA 72 bp AGTTCCCAGAGTCTCCCTCCATGCAGAGTTCTGCAGTaGCCTATATGTCTTCCAAAATCGAACTGTTCTAAA +
Preference number: 4 (lower is better)
Translates to: SSQSLPPCRVLQ*PICLPKSNCSK
Trigger: TTTAGAACAGTTCGATTTTGGAAGACATATAGGCAACTGCAGAACTCTGCATGGAGGGAGACTCTGGGAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR CAA 72 bp GGGTTCAAATCCCAGTACCCATATGGTAGCTCACAATaGTTTGTAACACTAGTTCCAGTGAATCTGACACCC +
Preference number: 4 (lower is better)
Translates to: GFKSQYPYGSSQ*FVTLVPVNLTP
Trigger: GGGTGTCAGATTCACTGGAACTAGTGTTACAAACAATTGTGAGCTACCATATGGGTACTGGGATTTGAACCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp TTCTCCATATTATCTTTATTTCACCCAAGGACCACGGATGTGGTCGTGATACACGCAATCTGCCATCAATaGTATTCTGGGGACATACAG +
Preference number: 4 (lower is better)
Translates to: FSILSLFHPRTTDVVVIHAICHQ*YSGDIQ
Trigger: CTGTATGTCCCCAGAATATCATTGATGGCAGATTGC...GTGTATCACGACCACATCCGTGGTCCTTGGGTGAAATAAAGATAATATGGAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp TTGGCCAAAATATTAGCCTGGGAAAAATTACCATCATACACCTTGATTGACAGATTTCCTTTGGCAGCCTaGTCCCCTGTGCTCAAGAAG +
Preference number: 4 (lower is better)
Translates to: LAKILAWEKLPSYTLIDRFPLAA*SPVLKK
Trigger: CTTCTTGAGCACAGGGGATCAGGCTGCCAAAGGAAA...TCTGTCAATCAAGGTGTATGATGGTAATTTTTCCCAGGCTAATATTTTGGCCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp TTGGCCAAAATATTAGCCTGGGAAAAATTACCATCATACACCTTGATTGACAGACTGATCCAAACACAGTaGTTCGCAAGGGGTCACCAC +
Preference number: 4 (lower is better)
Translates to: LAKILAWEKLPSYTLIDRLIQTQ*FARGHH
Trigger: GTGGTGACCCCTTGCGAATCACTGTGTTTGGATCAG...TCTGTCAATCAAGGTGTATGATGGTAATTTTTCCCAGGCTAATATTTTGGCCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp ATGCACATCGTGCTAAAAATATCCAGTCTCCTTGATCCCCACGACTTAGTACTGTGTTCCATCAGTATCTaGGGGTCATCTGGTATTACA +
Preference number: 4 (lower is better)
Translates to: MHIVLKISSLLDPHDLVLCSISI*GSSGIT
Trigger: TGTAATACCAGATGACCCTCAGATACTGATGGAACA...CAGTACTAAGTCGTGGGGATCAAGGAGACTGGATATTTTTAGCACGATGTGCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp GATACACAGCATCCTTCCCACCGAGTAGTATACAAGTGTTTGCTTTTGTATAATTTGAGATTATGCAGATaGGGTACCAGCTCCAGCCAG +
Preference number: 4 (lower is better)
Translates to: DTQHPSHRVVYKCLLLYNLRLCR*GTSSSQ
Trigger: CTGGCTGGAGCTGGTACCTCATCTGCATAATCTCAA...ATTATACAAAAGCAAACACTTGTATACTACTCGGTGGGAAGGATGCTGTGTATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACACTGAGAAATGTCATTaGGATTATGCAGATGAGGTA +
Preference number: 4 (lower is better)
Translates to: GTVGASLHLARLLTKGANTEKCH*DYADEV
Trigger: TACCTCATCTGCATAATCTCAATGACATTTCTCAGT...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGCACATTGCCATAGCTTaGCAAGACACTCCCATCATA +
Preference number: 4 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLHIAIA*QDTPII
Trigger: TATGATGGGAGTGTCTTGGCAAGCTATGGCAATGTG...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp TGCCAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTGGTGGTTCTGGAGGCTaGAAACGATGTTCTCCTGTT +
Preference number: 4 (lower is better)
Translates to: CQLMEEAPIKNSNGMRRIGGSGG*KRCSPV
Trigger: AACAGGAGAACATCGTTTCCAGCCTCCAGAACCACC...AATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTGGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp TTGGCCAAAATATTAGCCTGGGAAAAATTACCATCATACACCTTGATTGACAGAGATGTACACCATCACTaGTTTGGGACCCCCACTGTC +
Preference number: 4 (lower is better)
Translates to: LAKILAWEKLPSYTLIDRDVHHH*FGTPTV
Trigger: GACAGTGGGGGTCCCAAACCAGTGATGGTGTACATC...TCTGTCAATCAAGGTGTATGATGGTAATTTTTCCCAGGCTAATATTTTGGCCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GTAACACTCTTACATGTATATTACATATCCATAGCAACCTCCAGACAACGTCAGGCGTATTTTGCAGGCTaGAAACTAACAGCCCAGCTG +
Preference number: 4 (lower is better)
Translates to: VTLLHVYYISIATSRQRQAYFAG*KLTAQL
Trigger: CAGCTGGGCTGTTAGTTTCCAGCCTGCAAAATACGC...CTGACGTTGTCTGGAGGTTGCTATGGATATGTAATATACATGTAAGAGTGTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp TTCTCCATATTATCTTTATTTCACCCAAGGACCACGGATGTGGTCGTGATACACCTAGTTTCAGGATTATaGCGATCAGCCCAGTCAGTA +
Preference number: 4 (lower is better)
Translates to: FSILSLFHPRTTDVVVIHLVSGL*RSAQSV
Trigger: TACTGACTGGGCTGATCGCCATAATCCTGAAACTAG...GTGTATCACGACCACATCCGTGGTCCTTGGGTGAAATAAAGATAATATGGAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp TGCAAGACTGTTAACGAAAGGAGCAAACTTCAGAGTAACAAACCCACAGCAAATTGCATCAGCCCAAGCTaGAACTTGATCTGTTTGGCA +
Preference number: 4 (lower is better)
Translates to: CKTVNERSKLQSNKPTANCISPS*NLICLA
Trigger: TGCCAAACAGATCAAGTTCCAGCTTGGGCTGATGCA...ATTTGCTGTGGGTTTGTTACTCTGAAGTTTGCTCCTTTCGTTAACAGTCTTGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGTGTGTCTTGAGGAACTaGTTGATTTGGGTCACCAGT +
Preference number: 4 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLCVLRN*LIWVTS
Trigger: ACTGGTGACCCAAATCAACCAGTTCCTCAAGACACA...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GAGAAGGCACTTAAGCACCACAGGTGGATTTTCCAGTTTGTATTTTCTGTAGTGAGTGATGTCCGTGGATaGCACTTTAGTTGTTGTCGA +
Preference number: 4 (lower is better)
Translates to: EKALKHHRWIFQFVFSVVSDVRG*HFSCCR
Trigger: TCGACAACAACTAAAGTGCCATCCACGGACATCACT...CACTACAGAAAATACAAACTGGAAAATCCACCTGTGGTGCTTAAGTGCCTTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GATACACAGCATCCTTCCCACCGAGTAGTATACAAGTGTTTGCTTTTGTATAATGGCTTGGTTGTTGCTTaGGATCATCCTGTTTGGCAG +
Preference number: 4 (lower is better)
Translates to: DTQHPSHRVVYKCLLLYNGLVVA*DHPVWQ
Trigger: CTGCCAAACAGGATGATCCCAAGCAACAACCAAGCC...ATTATACAAAAGCAAACACTTGTATACTACTCGGTGGGAAGGATGCTGTGTATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp CAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTTTAGGGCTGCACCTCCGGTaGACATCATGTCTCCTCTTA +
Preference number: 4 (lower is better)
Translates to: QLMEEAPIKNSNGMRRILGLHLR*TSCLLL
Trigger: TAAGAGGAGACATGATGTCCACCGGAGGTGCAGCCC...TAAAATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR CAA 72 bp GTAAGTAGAGAAGTCATGGAAACAGAAGGTCTGTTTTaGAGGAGACATGTCATTTTGGAGAGGAAGGCTGCT +
Preference number: 4 (lower is better)
Translates to: VSREVMETEGLF*RRHVILERKAA
Trigger: AGCAGCCTTCCTCTCCAAAATGACATGTCTCCTCAAAAACAGACCTTCTGTTTCCATGACTTCTCTACTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp TTCTCCATATTATCTTTATTTCACCCAAGGACCACGGATGTGGTCGTGATACACAAAAAGTCCTTTGGTTaGATTGCTCCAACGGTTACC +
Preference number: 4 (lower is better)
Translates to: FSILSLFHPRTTDVVVIHKKSFG*IAPTVT
Trigger: GGTAACCGTTGGAGCAATTCAACCAAAGGACTTTTT...GTGTATCACGACCACATCCGTGGTCCTTGGGTGAAATAAAGATAATATGGAGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075054.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGAAAAAGTCCTTTGGTTaGATTGCTCCAACGGTTACC +
Preference number: 4 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLKKSFG*IAPTVT
Trigger: GGTAACCGTTGGAGCAATTCAACCAAAGGACTTTTT...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075054.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp TTCTCCATATTATCTTTATTTCACCCAAGGACCACGGATGTGGTCGTGATACACTGTTCCATCAGTATCTaGGGGTCATCTGGTATTACA +
Preference number: 4 (lower is better)
Translates to: FSILSLFHPRTTDVVVIHCSISI*GSSGIT
Trigger: TGTAATACCAGATGACCCTCAGATACTGATGGAACA...GTGTATCACGACCACATCCGTGGTCCTTGGGTGAAATAAAGATAATATGGAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp AGAGGATATAAAGGTAGACATCTGAAAGGACCATCCTATGAATTCTATAACTTGGCAGGTGCTACCCATTaGTGGTCCGTAAACAAAGCC +
Preference number: 4 (lower is better)
Translates to: RGYKGRHLKGPSYEFYNLAGATH*WSVNKA
Trigger: GGCTTTGTTTACGGACCATCAATGGGTAGCACCTGC...CAAGTTATAGAATTCATAGGATGGTCCTTTCAGATGTCTACCTTTATATCCTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp TTCTCCATATTATCTTTATTTCACCCAAGGACCACGGATGTGGTCGTGATACACCTGTATCTGAAACATTaGAGCCAACTTTTGTGGCCA +
Preference number: 4 (lower is better)
Translates to: FSILSLFHPRTTDVVVIHLYLKH*SQLLWP
Trigger: TGGCCACAAAAGTTGGCTGCAATGTTTCAGATACAG...GTGTATCACGACCACATCCGTGGTCCTTGGGTGAAATAAAGATAATATGGAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGCTGTATCTGAAACATTaGAGCCAACTTTTGTGGCCA +
Preference number: 4 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLLYLKH*SQLLWP
Trigger: TGGCCACAAAAGTTGGCTGCAATGTTTCAGATACAG...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp GAATGGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCCTCTCAAAACATCTTTaGCTTCAGGATATCCATATA +
Preference number: 4 (lower is better)
Translates to: EWYCWGILTPCKTVNERSLSKHL*LQDIHI
Trigger: TATATGGATATCCTGAAGGCAAAGATGTTTTGAGAG...GCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACCATTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGGGAATATCTGGTCCATaGTACTTCTTCAAAGCGGTT +
Preference number: 4 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLGISGP*YFFKAV
Trigger: AACCGCTTTGAAGAAGTAGCATGGACCAGATATTCC...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp TTCTCCATATTATCTTTATTTCACCCAAGGACCACGGATGTGGTCGTGATACACTCTCCAAACATAATTTaGCCACATGCATCTGGGAAG +
Preference number: 4 (lower is better)
Translates to: FSILSLFHPRTTDVVVIHSPNII*PHASGK
Trigger: CTTCCCAGATGCATGTGGCCAAATTATGTTTGGAGA...GTGTATCACGACCACATCCGTGGTCCTTGGGTGAAATAAAGATAATATGGAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGTCTCCAAACATAATTTaGCCACATGCATCTGGGAAG +
Preference number: 4 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLSPNII*PHASGK
Trigger: CTTCCCAGATGCATGTGGCCAAATTATGTTTGGAGA...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp CAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTTTAATGTTCTCCTGTTGGTaGAGCGGCATATGGAACCCC +
Preference number: 4 (lower is better)
Translates to: QLMEEAPIKNSNGMRRILMFSCW*SGIWNP
Trigger: GGGGTTCCATATGCCGCTCCACCAACAGGAGAACAT...TAAAATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp CAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTTTAGGGAGATGGTGGTTCTaGAGGCTGGAAACGATGTTC +
Preference number: 4 (lower is better)
Translates to: QLMEEAPIKNSNGMRRILGRWWF*RLETMF
Trigger: GAACATCGTTTCCAGCCTCCAGAACCACCATCTCCC...TAAAATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGCCATCAATGATATTCTaGGGACATACAGGAGCAAAC +
Preference number: 4 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLPSMIF*GHTGAN
Trigger: GTTTGCTCCTGTATGTCCCCAGAATATCATTGATGG...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp TTCTCCATATTATCTTTATTTCACCCAAGGACCACGGATGTGGTCGTGATACACTCTTCACTCTGGTCTTaGACGTATGATGAAACCACA +
Preference number: 4 (lower is better)
Translates to: FSILSLFHPRTTDVVVIHSSLWS*TYDETT
Trigger: TGTGGTTTCATCATACGTCCAAGACCAGAGTGAAGA...GTGTATCACGACCACATCCGTGGTCCTTGGGTGAAATAAAGATAATATGGAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGAGACAGTCTTCACTCTaGTCTTGGACGTATGATGAA +
Preference number: 4 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLRQSSL*SWTYDE
Trigger: TTCATCATACGTCCAAGACCAGAGTGAAGACTGTCT...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp ATGCACATCGTGCTAAAAATATCCAGTCTCCTTGATCCCCACGACTTAGTACTGGTTGAAAAAGTCCTTTaGTTGAATTGCTCCAACGGT +
Preference number: 4 (lower is better)
Translates to: MHIVLKISSLLDPHDLVLVEKVL*LNCSNG
Trigger: ACCGTTGGAGCAATTCAACCAAAGGACTTTTTCAAC...CAGTACTAAGTCGTGGGGATCAAGGAGACTGGATATTTTTAGCACGATGTGCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000075054.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGTATGTGGTATCGGGCTaGTTGAACATCTTGATCAAC +
Preference number: 4 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLYVVSG*LNILIN
Trigger: GTTGATCAAGATGTTCAACCAGCCCGATACCACATA...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp TGCAAGACTGTTAACGAAAGGAGCAAACTTCAGAGTAACAAACCCACAGCAAATCTAGTTTCAGGATTATaGCGATCAGCCCAGTCAGTA +
Preference number: 4 (lower is better)
Translates to: CKTVNERSKLQSNKPTANLVSGL*RSAQSV
Trigger: TACTGACTGGGCTGATCGCCATAATCCTGAAACTAG...ATTTGCTGTGGGTTTGTTACTCTGAAGTTTGCTCCTTTCGTTAACAGTCTTGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp TGCCAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTTGCATCAGCCCAAGCTaGAACTTGATCTGTTTGGCA +
Preference number: 4 (lower is better)
Translates to: CQLMEEAPIKNSNGMRRICISPS*NLICLA
Trigger: TGCCAAACAGATCAAGTTCCAGCTTGGGCTGATGCA...AATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTGGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp ATGCACATCGTGCTAAAAATATCCAGTCTCCTTGATCCCCACGACTTAGTACTGAGGAACTGGTTGATTTaGGTCACCAGTTTTAGCAAA +
Preference number: 4 (lower is better)
Translates to: MHIVLKISSLLDPHDLVLRNWLI*VTSFSK
Trigger: TTTGCTAAAACTGGTGACCCAAATCAACCAGTTCCT...CAGTACTAAGTCGTGGGGATCAAGGAGACTGGATATTTTTAGCACGATGTGCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp AATTACGGCTTAACCAGCAGCACAGCCACCAAGCATATAAATTATCATGCACATAGTGATGTCCGTGGATaGCACTTTAGTTGTTGTCGA +
Preference number: 4 (lower is better)
Translates to: NYGLTSSTATKHINYHAHSDVRG*HFSCCR
Trigger: TCGACAACAACTAAAGTGCCATCCACGGACATCACT...ATGTGCATGATAATTTATATGCTTGGTGGCTGTGCTGCTGGTTAAGCCGTAATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp TGCAAGACTGTTAACGAAAGGAGCAAACTTCAGAGTAACAAACCCACAGCAAATAGTGATGTCCGTGGATaGCACTTTAGTTGTTGTCGA +
Preference number: 4 (lower is better)
Translates to: CKTVNERSKLQSNKPTANSDVRG*HFSCCR
Trigger: TCGACAACAACTAAAGTGCCATCCACGGACATCACT...ATTTGCTGTGGGTTTGTTACTCTGAAGTTTGCTCCTTTCGTTAACAGTCTTGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp AGAGGATATAAAGGTAGACATCTGAAAGGACCATCCTATGAATTCTATAACTTGCACCGAGAAGGGGCTTaGTTGTTGCTTGGGATCATC +
Preference number: 4 (lower is better)
Translates to: RGYKGRHLKGPSYEFYNLHREGA*LLLGII
Trigger: GATGATCCCAAGCAACAACCAAGCCCCTTCTCGGTG...CAAGTTATAGAATTCATAGGATGGTCCTTTCAGATGTCTACCTTTATATCCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GATACACAGCATCCTTCCCACCGAGTAGTATACAAGTGTTTGCTTTTGTATAATAAGAACCACCTCATGTaGATGGATGGACTCACACTC +
Preference number: 4 (lower is better)
Translates to: DTQHPSHRVVYKCLLLYNKNHLM*MDGLTL
Trigger: GAGTGTGAGTCCATCCATCCACATGAGGTGGTTCTT...ATTATACAAAAGCAAACACTTGTATACTACTCGGTGGGAAGGATGCTGTGTATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp CAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTTTAGGGTGTGGGTGGGGATaGGGCAGTGTATTATTCTGT +
Preference number: 4 (lower is better)
Translates to: QLMEEAPIKNSNGMRRILGCGWG*GSVLFC
Trigger: ACAGAATAATACACTGCCCCATCCCCACCCACACCC...TAAAATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR CAA 72 bp GAAACAGAAGGTCTGTTTTTGAGGAGACATGTCATTTaGGAGAGGAAGGCTGCTCTTAAAATGAACTGCAGT +
Preference number: 4 (lower is better)
Translates to: ETEGLFLRRHVI*ERKAALKMNCS
Trigger: ACTGCAGTTCATTTTAAGAGCAGCCTTCCTCTCCAAAATGACATGTCTCCTCAAAAACAGACCTTCTGTTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR CAA 72 bp GGCATCATTTGCCGAAGAAATAGAGGAATATGGGCATaGCTTACTAAAGAAATGAGTGGCTTAGACCTGTCA +
Preference number: 4 (lower is better)
Translates to: GIICRRNRGIWA*LTKEMSGLDLS
Trigger: TGACAGGTCTAAGCCACTCATTTCTTTAGTAAGCAATGCCCATATTCCTCTATTTCTTCGGCAAATGATGCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp TGCAAGACTGTTAACGAAAGGAGCAAACTTCAGAGTAACAAACCCACAGCAAATCCCCAAGAAACTGAATaGCAGGACCCAAAATTTCAT +
Preference number: 4 (lower is better)
Translates to: CKTVNERSKLQSNKPTANPQETE*QDPKFH
Trigger: ATGAAATTTTGGGTCCTGTCATTCAGTTTCTTGGGG...ATTTGCTGTGGGTTTGTTACTCTGAAGTTTGCTCCTTTCGTTAACAGTCTTGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp GATACACAGCATCCTTCCCACCGAGTAGTATACAAGTGTTTGCTTTTGTATAATGCAATCTGCCATCAATaGTATTCTGGGGACATACAG +
Preference number: 4 (lower is better)
Translates to: DTQHPSHRVVYKCLLLYNAICHQ*YSGDIQ
Trigger: CTGTATGTCCCCAGAATATCATTGATGGCAGATTGC...ATTATACAAAAGCAAACACTTGTATACTACTCGGTGGGAAGGATGCTGTGTATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp CAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTTTATTGAGATTATGCAGATaGGGTACCAGCTCCAGCCAG +
Preference number: 4 (lower is better)
Translates to: QLMEEAPIKNSNGMRRILLRLCR*GTSSSQ
Trigger: CTGGCTGGAGCTGGTACCTCATCTGCATAATCTCAA...TAAAATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp GATACACAGCATCCTTCCCACCGAGTAGTATACAAGTGTTTGCTTTTGTATAATCACATTGCCATAGCTTaGCAAGACACTCCCATCATA +
Preference number: 4 (lower is better)
Translates to: DTQHPSHRVVYKCLLLYNHIAIA*QDTPII
Trigger: TATGATGGGAGTGTCTTGGCAAGCTATGGCAATGTG...ATTATACAAAAGCAAACACTTGTATACTACTCGGTGGGAAGGATGCTGTGTATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp GATACACAGCATCCTTCCCACCGAGTAGTATACAAGTGTTTGCTTTTGTATAATGTCCTTTGGTTGAATTaGTCCAACGGTTACCTTCAG +
Preference number: 4 (lower is better)
Translates to: DTQHPSHRVVYKCLLLYNVLWLN*SNGYLQ
Trigger: CTGAAGGTAACCGTTGGAGCAATTCAACCAAAGGAC...ATTATACAAAAGCAAACACTTGTATACTACTCGGTGGGAAGGATGCTGTGTATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075054.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp TGCAAGACTGTTAACGAAAGGAGCAAACTTCAGAGTAACAAACCCACAGCAAATCCATCAATGATATTCTaGGGACATACAGGAGCAAAC +
Preference number: 4 (lower is better)
Translates to: CKTVNERSKLQSNKPTANPSMIF*GHTGAN
Trigger: GTTTGCTCCTGTATGTCCCCAGAATATCATTGATGG...ATTTGCTGTGGGTTTGTTACTCTGAAGTTTGCTCCTTTCGTTAACAGTCTTGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp AATTACGGCTTAACCAGCAGCACAGCCACCAAGCATATAAATTATCATGCACATTCTTCACTCTGGTCTTaGACGTATGATGAAACCACA +
Preference number: 4 (lower is better)
Translates to: NYGLTSSTATKHINYHAHSSLWS*TYDETT
Trigger: TGTGGTTTCATCATACGTCCAAGACCAGAGTGAAGA...ATGTGCATGATAATTTATATGCTTGGTGGCTGTGCTGCTGGTTAAGCCGTAATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp ATTACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATAGACAGTCTTCACTCTaGTCTTGGACGTATGATGAA +
Preference number: 4 (lower is better)
Translates to: ITGKQQGIQRFLWSSRIHRQSSL*SWTYDE
Trigger: TTCATCATACGTCCAAGACCAGAGTGAAGACTGTCT...ATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGTAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp ATTACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTATGTGGTATCGGGCTaGTTGAACATCTTGATCAAC +
Preference number: 4 (lower is better)
Translates to: ITGKQQGIQRFLWSSRIHYVVSG*LNILIN
Trigger: GTTGATCAAGATGTTCAACCAGCCCGATACCACATA...ATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGTAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GTTCTTTTTGTTCACTGTCAGTGGCAACACATTCTCGTAAGTATGAGCTCGTCATTCAACCCTTCCCCTTaGTTAACTCCCAACATTATA +
Preference number: 4 (lower is better)
Translates to: VLFVHCQWQHILVSMSSSFNPSP*LTPNII
Trigger: TATAATGTTGGGAGTTAACCAAGGGGAAGGGTTGAA...TGACGAGCTCATACTTACGAGAATGTGTTGCCACTGACAGTGAACAAAAAGAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp TGCCAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTCTAGTTTCAGGATTATaGCGATCAGCCCAGTCAGTA +
Preference number: 4 (lower is better)
Translates to: CQLMEEAPIKNSNGMRRILVSGL*RSAQSV
Trigger: TACTGACTGGGCTGATCGCCATAATCCTGAAACTAG...AATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTGGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp TTCTCCATATTATCTTTATTTCACCCAAGGACCACGGATGTGGTCGTGATACACAGGAACTGGTTGATTTaGGTCACCAGTTTTAGCAAA +
Preference number: 4 (lower is better)
Translates to: FSILSLFHPRTTDVVVIHRNWLI*VTSFSK
Trigger: TTTGCTAAAACTGGTGACCCAAATCAACCAGTTCCT...GTGTATCACGACCACATCCGTGGTCCTTGGGTGAAATAAAGATAATATGGAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GATACACAGCATCCTTCCCACCGAGTAGTATACAAGTGTTTGCTTTTGTATAATTGTGTCTTGAGGAACTaGTTGATTTGGGTCACCAGT +
Preference number: 4 (lower is better)
Translates to: DTQHPSHRVVYKCLLLYNCVLRN*LIWVTS
Trigger: ACTGGTGACCCAAATCAACCAGTTCCTCAAGACACA...ATTATACAAAAGCAAACACTTGTATACTACTCGGTGGGAAGGATGCTGTGTATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGCTTTCTGGGAATATCTaGTCCATGCTACTTCTTCAA +
Preference number: 4 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLLSGNI*SMLLLQ
Trigger: TTGAAGAAGTAGCATGGACCAGATATTCCCAGAAAG...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp CAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTTTATGGGATCATCCTGTTTaGCAGTGGGAAAGGCTGATG +
Preference number: 4 (lower is better)
Translates to: QLMEEAPIKNSNGMRRILWDHPV*QWERLM
Trigger: CATCAGCCTTTCCCACTGCCAAACAGGATGATCCCA...TAAAATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp TGCCAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTTGTTCCATCAGTATCTaGGGGTCATCTGGTATTACA +
Preference number: 4 (lower is better)
Translates to: CQLMEEAPIKNSNGMRRICSISI*GSSGIT
Trigger: TGTAATACCAGATGACCCTCAGATACTGATGGAACA...AATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTGGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGACATTATATCATAGTTaGGGAACTCTCCTTGTTCCA +
Preference number: 4 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLTLYHS*GTLLVP
Trigger: TGGAACAAGGAGAGTTCCTCAACTATGATATAATGT...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGGTTGTCGAGGTATACTaGGAAATGTCATTGAGATTA +
Preference number: 4 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLVVEVY*EMSLRL
Trigger: TAATCTCAATGACATTTCTCAGTATACCTCGACAAC...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp AATTACGGCTTAACCAGCAGCACAGCCACCAAGCATATAAATTATCATGCACATAATTCTAGCGTATTTTaGAGGCTGGAAACTAACAGC +
Preference number: 4 (lower is better)
Translates to: NYGLTSSTATKHINYHAHNSSVF*RLETNS
Trigger: GCTGTTAGTTTCCAGCCTGCAAAATACGCTAGAATT...ATGTGCATGATAATTTATATGCTTGGTGGCTGTGCTGCTGGTTAAGCCGTAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp GATACACAGCATCCTTCCCACCGAGTAGTATACAAGTGTTTGCTTTTGTATAATCTGTATCTGAAACATTaGAGCCAACTTTTGTGGCCA +
Preference number: 4 (lower is better)
Translates to: DTQHPSHRVVYKCLLLYNLYLKH*SQLLWP
Trigger: TGGCCACAAAAGTTGGCTGCAATGTTTCAGATACAG...ATTATACAAAAGCAAACACTTGTATACTACTCGGTGGGAAGGATGCTGTGTATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp ATGCACATCGTGCTAAAAATATCCAGTCTCCTTGATCCCCACGACTTAGTACTGCTCTCAAAACATCTTTaGCTTCAGGATATCCATATA +
Preference number: 4 (lower is better)
Translates to: MHIVLKISSLLDPHDLVLLSKHL*LQDIHI
Trigger: TATATGGATATCCTGAAGGCAAAGATGTTTTGAGAG...CAGTACTAAGTCGTGGGGATCAAGGAGACTGGATATTTTTAGCACGATGTGCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp TGCCAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTCCATCAATGATATTCTaGGGACATACAGGAGCAAAC +
Preference number: 4 (lower is better)
Translates to: CQLMEEAPIKNSNGMRRIPSMIF*GHTGAN
Trigger: GTTTGCTCCTGTATGTCCCCAGAATATCATTGATGG...AATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTGGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp ATTACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATGTTGAAAAAGTCCTTTaGTTGAATTGCTCCAACGGT +
Preference number: 4 (lower is better)
Translates to: ITGKQQGIQRFLWSSRIHVEKVL*LNCSNG
Trigger: ACCGTTGGAGCAATTCAACCAAAGGACTTTTTCAAC...ATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGTAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075054.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp AATTACGGCTTAACCAGCAGCACAGCCACCAAGCATATAAATTATCATGCACATCTTTCTGGGAATATCTaGTCCATGCTACTTCTTCAA +
Preference number: 4 (lower is better)
Translates to: NYGLTSSTATKHINYHAHLSGNI*SMLLLQ
Trigger: TTGAAGAAGTAGCATGGACCAGATATTCCCAGAAAG...ATGTGCATGATAATTTATATGCTTGGTGGCTGTGCTGCTGGTTAAGCCGTAATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp ATTACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATCTTTCTGGGAATATCTaGTCCATGCTACTTCTTCAA +
Preference number: 4 (lower is better)
Translates to: ITGKQQGIQRFLWSSRIHLSGNI*SMLLLQ
Trigger: TTGAAGAAGTAGCATGGACCAGATATTCCCAGAAAG...ATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGTAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp CAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTTTAAAGAACCACCTCATGTaGATGGATGGACTCACACTC +
Preference number: 4 (lower is better)
Translates to: QLMEEAPIKNSNGMRRILKNHLM*MDGLTL
Trigger: GAGTGTGAGTCCATCCATCCACATGAGGTGGTTCTT...TAAAATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR CAA 72 bp CAAGCCTCACCTTGGTGGAATTCTGTTCATTCTAGCTaGGGAATTTTACCCTTGTCTTTGTTTATATGGATG +
Preference number: 4 (lower is better)
Translates to: QASPWWNSVHSS*GILPLSLFIWM
Trigger: CATCCATATAAACAAAGACAAGGGTAAAATTCCCAAGCTAGAATGAACAGAATTCCACCAAGGTGAGGCTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR CAA 72 bp CTTACTAAAGAAATGAGTGGCTTAGACCTGTCATTCTaGAGTGACATTCTCTGGCTTCTAACTTCTCTGAGA +
Preference number: 4 (lower is better)
Translates to: LTKEMSGLDLSF*SDILWLLTSLR
Trigger: TCTCAGAGAAGTTAGAAGCCAGAGAATGTCACTCAAGAATGACAGGTCTAAGCCACTCATTTCTTTAGTAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp TGCAAGACTGTTAACGAAAGGAGCAAACTTCAGAGTAACAAACCCACAGCAAATGTTGTCGAGGTATACTaGGAAATGTCATTGAGATTA +
Preference number: 4 (lower is better)
Translates to: CKTVNERSKLQSNKPTANVVEVY*EMSLRL
Trigger: TAATCTCAATGACATTTCTCAGTATACCTCGACAAC...ATTTGCTGTGGGTTTGTTACTCTGAAGTTTGCTCCTTTCGTTAACAGTCTTGCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp AATTACGGCTTAACCAGCAGCACAGCCACCAAGCATATAAATTATCATGCACATGTTGTCGAGGTATACTaGGAAATGTCATTGAGATTA +
Preference number: 4 (lower is better)
Translates to: NYGLTSSTATKHINYHAHVVEVY*EMSLRL
Trigger: TAATCTCAATGACATTTCTCAGTATACCTCGACAAC...ATGTGCATGATAATTTATATGCTTGGTGGCTGTGCTGCTGGTTAAGCCGTAATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGCTCTCAAAACATCTTTaGCTTCAGGATATCCATATA +
Preference number: 4 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLLSKHL*LQDIHI
Trigger: TATATGGATATCCTGAAGGCAAAGATGTTTTGAGAG...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp TTCTCCATATTATCTTTATTTCACCCAAGGACCACGGATGTGGTCGTGATACACGTATGTCATTACTACTaGACTCAACATCACATCATT +
Preference number: 4 (lower is better)
Translates to: FSILSLFHPRTTDVVVIHVCHYY*TQHHII
Trigger: AATGATGTGATGTTGAGTGCAGTAGTAATGACATAC...GTGTATCACGACCACATCCGTGGTCCTTGGGTGAAATAAAGATAATATGGAGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp GATACACAGCATCCTTCCCACCGAGTAGTATACAAGTGTTTGCTTTTGTATAATTTCAACCCTTCCCCTTaGTTAACTCCCAACATTATA +
Preference number: 4 (lower is better)
Translates to: DTQHPSHRVVYKCLLLYNFNPSP*LTPNII
Trigger: TATAATGTTGGGAGTTAACCAAGGGGAAGGGTTGAA...ATTATACAAAAGCAAACACTTGTATACTACTCGGTGGGAAGGATGCTGTGTATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp TGCCAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTAGGAACTGGTTGATTTaGGTCACCAGTTTTAGCAAA +
Preference number: 4 (lower is better)
Translates to: CQLMEEAPIKNSNGMRRIRNWLI*VTSFSK
Trigger: TTTGCTAAAACTGGTGACCCAAATCAACCAGTTCCT...AATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTGGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR CAA 72 bp CGTCACTCATCAGTGGTGAGTAGACTACTCGGGATTTaGAAGACTTTGCTTATGAGAAAGAATTGTAGTTTT +
Preference number: 4 (lower is better)
Translates to: RHSSVVSRLLGI*KTLLMRKNCSF
Trigger: AAAACTACAATTCTTTCTCATAAGCAAAGTCTTCAAAATCCCGAGTAGTCTACTCACCACTGATGAGTGACG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
3UTR CAA 72 bp TTCTTATGTCCTGGTCTTTCTAGGATCTCTTTGTCTTaGCTTGTCTCTTTTCTTATCAGGCTAACTCCAAGA +
Preference number: 4 (lower is better)
Translates to: FLCPGLSRISLS*LVSFLIRLTPR
Trigger: TCTTGGAGTTAGCCTGATAAGAAAAGAGACAAGCAAAGACAAAGAGATCCTAGAAAGACCAGGACATAAGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp AGAGGATATAAAGGTAGACATCTGAAAGGACCATCCTATGAATTCTATAACTTGCCCCAAGAAACTGAATaGCAGGACCCAAAATTTCAT +
Preference number: 4 (lower is better)
Translates to: RGYKGRHLKGPSYEFYNLPQETE*QDPKFH
Trigger: ATGAAATTTTGGGTCCTGTCATTCAGTTTCTTGGGG...CAAGTTATAGAATTCATAGGATGGTCCTTTCAGATGTCTACCTTTATATCCTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp TGCCAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTACATTATATCATAGTTaGGGAACTCTCCTTGTTCCA +
Preference number: 4 (lower is better)
Translates to: CQLMEEAPIKNSNGMRRITLYHS*GTLLVP
Trigger: TGGAACAAGGAGAGTTCCTCAACTATGATATAATGT...AATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTGGCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp TGCCAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTACTGAGAAATGTCATTaGGATTATGCAGATGAGGTA +
Preference number: 4 (lower is better)
Translates to: CQLMEEAPIKNSNGMRRITEKCH*DYADEV
Trigger: TACCTCATCTGCATAATCTCAATGACATTTCTCAGT...AATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTGGCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp CAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTTTAAATGTATGTAAGGGCTaGATCCCTGGTATAGTGTTG +
Preference number: 4 (lower is better)
Translates to: QLMEEAPIKNSNGMRRILNVCKG*IPGIVL
Trigger: CAACACTATACCAGGGATTCAGCCCTTACATACATT...TAAAATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp ATTACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATGTATGTCATTACTACTaGACTCAACATCACATCATT +
Preference number: 4 (lower is better)
Translates to: ITGKQQGIQRFLWSSRIHVCHYY*TQHHII
Trigger: AATGATGTGATGTTGAGTGCAGTAGTAATGACATAC...ATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGTAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp CAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTTTAGGAATATCTGGTCCATaGTACTTCTTCAAAGCGGTT +
Preference number: 4 (lower is better)
Translates to: QLMEEAPIKNSNGMRRILGISGP*YFFKAV
Trigger: AACCGCTTTGAAGAAGTAGCATGGACCAGATATTCC...TAAAATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp CAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTTTATCCACTCTGAGCTATTaGTCGTTGAAAAAGTCCTTC +
Preference number: 4 (lower is better)
Translates to: QLMEEAPIKNSNGMRRILSTLSY*SLKKSF
Trigger: GAAGGACTTTTTCAACGAGCAATAGCTCAGAGTGGA...TAAAATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000108308.10
CDS-3UTR CCA 90 bp CAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTTTATCTCCAAACATAATTTaGCCACATGCATCTGGGAAG +
Preference number: 4 (lower is better)
Translates to: QLMEEAPIKNSNGMRRILSPNII*PHASGK
Trigger: CTTCCCAGATGCATGTGGCCAAATTATGTTTGGAGA...TAAAATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CCA 90 bp CAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTTTATATGTGGTATCGGGCTaGTTGAACATCTTGATCAAC +
Preference number: 4 (lower is better)
Translates to: QLMEEAPIKNSNGMRRILYVVSG*LNILIN
Trigger: GTTGATCAAGATGTTCAACCAGCCCGATACCACATA...TAAAATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp AGAGGATATAAAGGTAGACATCTGAAAGGACCATCCTATGAATTCTATAACTTGAATTCTAGCGTATTTTaGAGGCTGGAAACTAACAGC +
Preference number: 4 (lower is better)
Translates to: RGYKGRHLKGPSYEFYNLNSSVF*RLETNS
Trigger: GCTGTTAGTTTCCAGCCTGCAAAATACGCTAGAATT...CAAGTTATAGAATTCATAGGATGGTCCTTTCAGATGTCTACCTTTATATCCTCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR GCA 90 bp GTAACACTCTTACATGTATATTACATATCCATAGCAACCTCCAGACAACGTCAGGTATGTCATTACTACTaGACTCAACATCACATCATT +
Preference number: 4 (lower is better)
Translates to: VTLLHVYYISIATSRQRQVCHYY*TQHHII
Trigger: AATGATGTGATGTTGAGTGCAGTAGTAATGACATAC...CTGACGTTGTCTGGAGGTTGCTATGGATATGTAATATACATGTAAGAGTGTTAC
37% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp AGAGGATATAAAGGTAGACATCTGAAAGGACCATCCTATGAATTCTATAACTTGACATTATATCATAGTTaGGGAACTCTCCTTGTTCCA +
Preference number: 4 (lower is better)
Translates to: RGYKGRHLKGPSYEFYNLTLYHS*GTLLVP
Trigger: TGGAACAAGGAGAGTTCCTCAACTATGATATAATGT...CAAGTTATAGAATTCATAGGATGGTCCTTTCAGATGTCTACCTTTATATCCTCT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR TCA 90 bp CAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTTTAACTGAGAAATGTCATTaGGATTATGCAGATGAGGTA +
Preference number: 4 (lower is better)
Translates to: QLMEEAPIKNSNGMRRILTEKCH*DYADEV
Trigger: TACCTCATCTGCATAATCTCAATGACATTTCTCAGT...TAAAATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
3UTR CAA 72 bp ACACAGCATCCTTCCCACCGAGTAGTATACAAGTGTTaGCTTTTGTATAATAAGCTTTCGATTCTTGAAAAA +
Preference number: 4 (lower is better)
Translates to: TQHPSHRVVYKC*LLYNKLSILEK
Trigger: TTTTTCAAGAATCGAAAGCTTATTATACAAAAGCAAACACTTGTATACTACTCGGTGGGAAGGATGCTGTGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS TCA 90 bp ATTTCCTCTTCTGGAGCATGGGTTAGGTCGTTGGTGGTCGTGCGCTaGGGGCTGCACCTCCGGTGGACATCATGTCTCCTCTTATCCTTC +
Preference number: 5 (lower is better)
Translates to: ISSSGAWVRSLVVVR*GLHLRWTSCLLLSF
Trigger: GAAGGATAAGAGGAGACATGATGTCCACCGGAGGTGCAGCCCTCAGCGCACGACCACCAACGACCTAACCCATGCTCCAGAAGAGGAAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000191835.2
ENSMUST00000193603.6
CDS GCA 90 bp CTTCTGGAGCATGGGTTAGGTCGTTGGTGGTCGTGCGCTGAGGGCTaGACCTCCGGTGGACATCATGTCTCCTCTTATCCTTCTTGTAGT +
Preference number: 5 (lower is better)
Translates to: LLEHGLGRWWSCAEG*TSGGHHVSSYPSCS
Trigger: ACTACAAGAAGGATAAGAGGAGACATGATGTCCACCGGAGGTGCAGCCCTCAGCGCACGACCACCAACGACCTAACCCATGCTCCAGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000191835.2
ENSMUST00000193603.6
CDS CCA 90 bp AATCTGGGGGACAGGCGGTCCGAAGAACCACCTCATGTGGATGGATaGACTCACACTCGTGATCCAAGTCAGTGTGCTTCATTTGGAGAG +
Preference number: 5 (lower is better)
Translates to: NLGDRRSEEPPHVDG*THTRDPSQCASFGE
Trigger: CTCTCCAAATGAAGCACACTGACTTGGATCACGAGTGTGAGTCCATCCATCCACATGAGGTGGTTCTTCGGACCGCCTGTCCCCCAGATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000191835.2
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACCGAGAAGGGGCTTGGTaGTTGCTTGGGATCATCCTG +
Preference number: 5 (lower is better)
Translates to: GTVGASLHLARLLTKGANREGAW*LLGIIL
Trigger: CAGGATGATCCCAAGCAACAACCAAGCCCCTTCTCG...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACGGGCTTGGTTGTTGCTaGGGATCATCCTGTTTGGCA +
Preference number: 5 (lower is better)
Translates to: GTVGASLHLARLLTKGANGLGCC*GSSCLA
Trigger: TGCCAAACAGGATGATCCCAAGCAACAACCAAGCCC...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS TCA 90 bp GCGGTCCGAAGAACCACCTCATGTGGATGGATGGACTCACACTCGTaGTCCAAGTCAGTGTGCTTCATTTGGAGAGACATAATTTCCTCT +
Preference number: 5 (lower is better)
Translates to: AVRRTTSCGWMDSHS*SKSVCFIWRDIISS
Trigger: AGAGGAAATTATGTCTCTCCAAATGAAGCACACTGACTTGGATCACGAGTGTGAGTCCATCCATCCACATGAGGTGGTTCTTCGGACCGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000191835.2
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp GAATGGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCGCAAAAGCCAAGATGTaGAGAAACAGCAGAGAGGCC +
Preference number: 5 (lower is better)
Translates to: EWYCWGILTPCKTVNERSAKAKM*RNSREA
Trigger: GGCCTCTCTGCTGTTTCTCAACATCTTGGCTTTTGC...GCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACCATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACGCAAAAGCCAAGATGTaGAGAAACAGCAGAGAGGCC +
Preference number: 5 (lower is better)
Translates to: GTVGASLHLARLLTKGANAKAKM*RNSREA
Trigger: GGCCTCTCTGCTGTTTCTCAACATCTTGGCTTTTGC...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp AATTACGGCTTAACCAGCAGCACAGCCACCAAGCATATAAATTATCATGCACATTACACCATCACTGGTTaGGGACCCCCACTGTCCCGA +
Preference number: 5 (lower is better)
Translates to: NYGLTSSTATKHINYHAHYTITG*GPPLSR
Trigger: TCGGGACAGTGGGGGTCCCAAACCAGTGATGGTGTA...ATGTGCATGATAATTTATATGCTTGGTGGCTGTGCTGCTGGTTAAGCCGTAATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp ATTACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTACACCATCACTGGTTaGGGACCCCCACTGTCCCGA +
Preference number: 5 (lower is better)
Translates to: ITGKQQGIQRFLWSSRIHYTITG*GPPLSR
Trigger: TCGGGACAGTGGGGGTCCCAAACCAGTGATGGTGTA...ATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGTAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACTCACATTGCCATAGCTaGCCAAGACACTCCCATCAT +
Preference number: 5 (lower is better)
Translates to: GTVGASLHLARLLTKGANSHCHS*PRHSHH
Trigger: ATGATGGGAGTGTCTTGGCAAGCTATGGCAATGTGA...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp GAATGGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAGCCCAAGCTGGAACTaGATCTGTTTGGCAATGATG +
Preference number: 5 (lower is better)
Translates to: EWYCWGILTPCKTVNERSSPSWN*ICLAMM
Trigger: CATCATTGCCAAACAGATCAAGTTCCAGCTTGGGCT...GCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACCATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACAGCCCAAGCTGGAACTaGATCTGTTTGGCAATGATG +
Preference number: 5 (lower is better)
Translates to: GTVGASLHLARLLTKGANSPSWN*ICLAMM
Trigger: CATCATTGCCAAACAGATCAAGTTCCAGCTTGGGCT...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp GAATGGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCCTCTCCAAACATAATTaGGCCACATGCATCTGGGAA +
Preference number: 5 (lower is better)
Translates to: EWYCWGILTPCKTVNERSLSKHN*ATCIWE
Trigger: TTCCCAGATGCATGTGGCCAAATTATGTTTGGAGAG...GCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACCATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACCTCTCCAAACATAATTaGGCCACATGCATCTGGGAA +
Preference number: 5 (lower is better)
Translates to: GTVGASLHLARLLTKGANLSKHN*ATCIWE
Trigger: TTCCCAGATGCATGTGGCCAAATTATGTTTGGAGAG...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACCTTCAACCCTTCCCCTaGGTTAACTCCCAACATTAT +
Preference number: 5 (lower is better)
Translates to: GTVGASLHLARLLTKGANLQPFP*VNSQHY
Trigger: ATAATGTTGGGAGTTAACCAAGGGGAAGGGTTGAAG...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp TTCTCCATATTATCTTTATTTCACCCAAGGACCACGGATGTGGTCGTGATACACGGGCTTGGTTGTTGCTaGGGATCATCCTGTTTGGCA +
Preference number: 5 (lower is better)
Translates to: FSILSLFHPRTTDVVVIHGLGCC*GSSCLA
Trigger: TGCCAAACAGGATGATCCCAAGCAACAACCAAGCCC...GTGTATCACGACCACATCCGTGGTCCTTGGGTGAAATAAAGATAATATGGAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp TGCAAGACTGTTAACGAAAGGAGCAAACTTCAGAGTAACAAACCCACAGCAAATCGAGAAGGGGCTTGGTaGTTGCTTGGGATCATCCTG +
Preference number: 5 (lower is better)
Translates to: CKTVNERSKLQSNKPTANREGAW*LLGIIL
Trigger: CAGGATGATCCCAAGCAACAACCAAGCCCCTTCTCG...ATTTGCTGTGGGTTTGTTACTCTGAAGTTTGCTCCTTTCGTTAACAGTCTTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS CCA 90 bp TTCTGGAGGCTGGAAACGATGTTCTCCTGTTGGTGGAGCGGCATATaGAACCCCAAGAAACTGAATGACAGGACCCAAAATTTCATTATT +
Preference number: 5 (lower is better)
Translates to: FWRLETMFSCWWSGI*NPKKLNDRTQNFII
Trigger: AATAATGAAATTTTGGGTCCTGTCATTCAGTTTCTTGGGGTTCCATATGCCGCTCCACCAACAGGAGAACATCGTTTCCAGCCTCCAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000191835.2
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp AATTACGGCTTAACCAGCAGCACAGCCACCAAGCATATAAATTATCATGCACATGATAAAGTCAGCAGGTaGACACATGAACCCCCAGCG +
Preference number: 5 (lower is better)
Translates to: NYGLTSSTATKHINYHAHDKVSR*THEPPA
Trigger: CGCTGGGGGTTCATGTGTCAACCTGCTGACTTTATC...ATGTGCATGATAATTTATATGCTTGGTGGCTGTGCTGCTGGTTAAGCCGTAATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp TGCAAGACTGTTAACGAAAGGAGCAAACTTCAGAGTAACAAACCCACAGCAAATGATAAAGTCAGCAGGTaGACACATGAACCCCCAGCG +
Preference number: 5 (lower is better)
Translates to: CKTVNERSKLQSNKPTANDKVSR*THEPPA
Trigger: CGCTGGGGGTTCATGTGTCAACCTGCTGACTTTATC...ATTTGCTGTGGGTTTGTTACTCTGAAGTTTGCTCCTTTCGTTAACAGTCTTGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACTTCCACTCTGAGCTATaGCTCGTTGAAAAAGTCCTT +
Preference number: 5 (lower is better)
Translates to: GTVGASLHLARLLTKGANFHSEL*LVEKVL
Trigger: AAGGACTTTTTCAACGAGCAATAGCTCAGAGTGGAA...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp GAATGGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCTCAAAGCGGTTGGGTTaGGTATGGATGAATTTTGTG +
Preference number: 5 (lower is better)
Translates to: EWYCWGILTPCKTVNERSSKRLG*VWMNFV
Trigger: CACAAAATTCATCCATACCAAACCCAACCGCTTTGA...GCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACCATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp GATACACAGCATCCTTCCCACCGAGTAGTATACAAGTGTTTGCTTTTGTATAATCGAGAAGGGGCTTGGTaGTTGCTTGGGATCATCCTG +
Preference number: 5 (lower is better)
Translates to: DTQHPSHRVVYKCLLLYNREGAW*LLGIIL
Trigger: CAGGATGATCCCAAGCAACAACCAAGCCCCTTCTCG...ATTATACAAAAGCAAACACTTGTATACTACTCGGTGGGAAGGATGCTGTGTATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS CCA 90 bp TGGTGTGGAATTCTTCCTTGTAGGTCTGAGAGTGATGTCCGTGGATaGCACTTTAGTTGTTGTCGAGGTATACTGAGAAATGTCATTGAG +
Preference number: 5 (lower is better)
Translates to: WCGILPCRSESDVRG*HFSCCRGILRNVIE
Trigger: CTCAATGACATTTCTCAGTATACCTCGACAACAACTAAAGTGCCATCCACGGACATCACTCTCAGACCTACAAGGAAGAATTCCACACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000191835.2
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp CAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTTTATACACCATCACTGGTTaGGGACCCCCACTGTCCCGA +
Preference number: 5 (lower is better)
Translates to: QLMEEAPIKNSNGMRRILYTITG*GPPLSR
Trigger: TCGGGACAGTGGGGGTCCCAAACCAGTGATGGTGTA...TAAAATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGTCACATTGCCATAGCTaGCCAAGACACTCCCATCAT +
Preference number: 5 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLSHCHS*PRHSHH
Trigger: ATGATGGGAGTGTCTTGGCAAGCTATGGCAATGTGA...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp GTAACACTCTTACATGTATATTACATATCCATAGCAACCTCCAGACAACGTCAGGATAAAGTCAGCAGGTaGACACATGAACCCCCAGCG +
Preference number: 5 (lower is better)
Translates to: VTLLHVYYISIATSRQRQDKVSR*THEPPA
Trigger: CGCTGGGGGTTCATGTGTCAACCTGCTGACTTTATC...CTGACGTTGTCTGGAGGTTGCTATGGATATGTAATATACATGTAAGAGTGTTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp ATGCACATCGTGCTAAAAATATCCAGTCTCCTTGATCCCCACGACTTAGTACTGAGTCCTTTGGTTGAATaGCTCCAACGGTTACCTTCA +
Preference number: 5 (lower is better)
Translates to: MHIVLKISSLLDPHDLVLSPLVE*LQRLPS
Trigger: TGAAGGTAACCGTTGGAGCAATTCAACCAAAGGACT...CAGTACTAAGTCGTGGGGATCAAGGAGACTGGATATTTTTAGCACGATGTGCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075054.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp GGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCAAACGGCTGGTTGAACATCTaGATCAACAAGTTCTTTGTA +
Preference number: 5 (lower is better)
Translates to: GTVGASLHLARLLTKGANGWLNI*INKFFV
Trigger: TACAAAGAACTTGTTGATCAAGATGTTCAACCAGCC...GTTTGCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp ATGCACATCGTGCTAAAAATATCCAGTCTCCTTGATCCCCACGACTTAGTACTGCTTCAACCCTTCCCCTaGGTTAACTCCCAACATTAT +
Preference number: 5 (lower is better)
Translates to: MHIVLKISSLLDPHDLVLLQPFP*VNSQHY
Trigger: ATAATGTTGGGAGTTAACCAAGGGGAAGGGTTGAAG...CAGTACTAAGTCGTGGGGATCAAGGAGACTGGATATTTTTAGCACGATGTGCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp AATTACGGCTTAACCAGCAGCACAGCCACCAAGCATATAAATTATCATGCACATAGCAGGTGCTACCCATaGATGGTCCGTAAACAAAGC +
Preference number: 5 (lower is better)
Translates to: NYGLTSSTATKHINYHAHSRCYP*MVRKQS
Trigger: GCTTTGTTTACGGACCATCAATGGGTAGCACCTGCT...ATGTGCATGATAATTTATATGCTTGGTGGCTGTGCTGCTGGTTAAGCCGTAATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp TGCAAGACTGTTAACGAAAGGAGCAAACTTCAGAGTAACAAACCCACAGCAAATAGCAGGTGCTACCCATaGATGGTCCGTAAACAAAGC +
Preference number: 5 (lower is better)
Translates to: CKTVNERSKLQSNKPTANSRCYP*MVRKQS
Trigger: GCTTTGTTTACGGACCATCAATGGGTAGCACCTGCT...ATTTGCTGTGGGTTTGTTACTCTGAAGTTTGCTCCTTTCGTTAACAGTCTTGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp GAATGGTACTGTTGGGGCATCCTTACACCTTGCAAGACTGTTAACGAAAGGAGCTGGAACTTGATCTGTTaGGCAATGATGATAAAAGGC +
Preference number: 5 (lower is better)
Translates to: EWYCWGILTPCKTVNERSWNLIC*AMMIKG
Trigger: GCCTTTTATCATCATTGCCAAACAGATCAAGTTCCA...GCTCCTTTCGTTAACAGTCTTGCAAGGTGTAAGGATGCCCCAACAGTACCATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp TGCAAGACTGTTAACGAAAGGAGCAAACTTCAGAGTAACAAACCCACAGCAAATGAAGGGGCTTGGTTGTaGCTTGGGATCATCCTGTTT +
Preference number: 5 (lower is better)
Translates to: CKTVNERSKLQSNKPTANEGAWL*LGIILF
Trigger: AAACAGGATGATCCCAAGCAACAACCAAGCCCCTTC...ATTTGCTGTGGGTTTGTTACTCTGAAGTTTGCTCCTTTCGTTAACAGTCTTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp ATTACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTCACATTGCCATAGCTaGCCAAGACACTCCCATCAT +
Preference number: 5 (lower is better)
Translates to: ITGKQQGIQRFLWSSRIHSHCHS*PRHSHH
Trigger: ATGATGGGAGTGTCTTGGCAAGCTATGGCAATGTGA...ATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGTAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGACTGTATCTGAAACATaGCAGCCAACTTTTGTGGCC +
Preference number: 5 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLTVSET*QPTFVA
Trigger: GGCCACAAAAGTTGGCTGCAATGTTTCAGATACAGT...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp TTCTCCATATTATCTTTATTTCACCCAAGGACCACGGATGTGGTCGTGATACACACTGTATCTGAAACATaGCAGCCAACTTTTGTGGCC +
Preference number: 5 (lower is better)
Translates to: FSILSLFHPRTTDVVVIHTVSET*QPTFVA
Trigger: GGCCACAAAAGTTGGCTGCAATGTTTCAGATACAGT...GTGTATCACGACCACATCCGTGGTCCTTGGGTGAAATAAAGATAATATGGAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp TTGGCCAAAATATTAGCCTGGGAAAAATTACCATCATACACCTTGATTGACAGAGGGCTTGGTTGTTGCTaGGGATCATCCTGTTTGGCA +
Preference number: 5 (lower is better)
Translates to: LAKILAWEKLPSYTLIDRGLGCC*GSSCLA
Trigger: TGCCAAACAGGATGATCCCAAGCAACAACCAAGCCC...TCTGTCAATCAAGGTGTATGATGGTAATTTTTCCCAGGCTAATATTTTGGCCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp TGCCAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTGAAGGGGCTTGGTTGTaGCTTGGGATCATCCTGTTT +
Preference number: 5 (lower is better)
Translates to: CQLMEEAPIKNSNGMRRIEGAWL*LGIILF
Trigger: AAACAGGATGATCCCAAGCAACAACCAAGCCCCTTC...AATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTGGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp GATACACAGCATCCTTCCCACCGAGTAGTATACAAGTGTTTGCTTTTGTATAATGAAGGGGCTTGGTTGTaGCTTGGGATCATCCTGTTT +
Preference number: 5 (lower is better)
Translates to: DTQHPSHRVVYKCLLLYNEGAWL*LGIILF
Trigger: AAACAGGATGATCCCAAGCAACAACCAAGCCCCTTC...ATTATACAAAAGCAAACACTTGTATACTACTCGGTGGGAAGGATGCTGTGTATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp TGCCAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTGCAAAAGCCAAGATGTaGAGAAACAGCAGAGAGGCC +
Preference number: 5 (lower is better)
Translates to: CQLMEEAPIKNSNGMRRIAKAKM*RNSREA
Trigger: GGCCTCTCTGCTGTTTCTCAACATCTTGGCTTTTGC...AATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTGGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp TTCTCCATATTATCTTTATTTCACCCAAGGACCACGGATGTGGTCGTGATACACATCCCTGGTATAGTGTaGGGAATCATTGTGATGGTG +
Preference number: 5 (lower is better)
Translates to: FSILSLFHPRTTDVVVIHIPGIV*GIIVMV
Trigger: CACCATCACAATGATTCCCAACACTATACCAGGGAT...GTGTATCACGACCACATCCGTGGTCCTTGGGTGAAATAAAGATAATATGGAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp GTTCTTTTTGTTCACTGTCAGTGGCAACACATTCTCGTAAGTATGAGCTCGTCAATCCCTGGTATAGTGTaGGGAATCATTGTGATGGTG +
Preference number: 5 (lower is better)
Translates to: VLFVHCQWQHILVSMSSSIPGIV*GIIVMV
Trigger: CACCATCACAATGATTCCCAACACTATACCAGGGAT...TGACGAGCTCATACTTACGAGAATGTGTTGCCACTGACAGTGAACAAAAAGAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp TTCTCCATATTATCTTTATTTCACCCAAGGACCACGGATGTGGTCGTGATACACTTCCACTCTGAGCTATaGCTCGTTGAAAAAGTCCTT +
Preference number: 5 (lower is better)
Translates to: FSILSLFHPRTTDVVVIHFHSEL*LVEKVL
Trigger: AAGGACTTTTTCAACGAGCAATAGCTCAGAGTGGAA...GTGTATCACGACCACATCCGTGGTCCTTGGGTGAAATAAAGATAATATGGAGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp AATTACGGCTTAACCAGCAGCACAGCCACCAAGCATATAAATTATCATGCACATATCCCTGGTATAGTGTaGGGAATCATTGTGATGGTG +
Preference number: 5 (lower is better)
Translates to: NYGLTSSTATKHINYHAHIPGIV*GIIVMV
Trigger: CACCATCACAATGATTCCCAACACTATACCAGGGAT...ATGTGCATGATAATTTATATGCTTGGTGGCTGTGCTGCTGGTTAAGCCGTAATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp TGCCAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTCTCTCCAAACATAATTaGGCCACATGCATCTGGGAA +
Preference number: 5 (lower is better)
Translates to: CQLMEEAPIKNSNGMRRILSKHN*ATCIWE
Trigger: TTCCCAGATGCATGTGGCCAAATTATGTTTGGAGAG...AATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTGGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp TGCCAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTACTGTATCTGAAACATaGCAGCCAACTTTTGTGGCC +
Preference number: 5 (lower is better)
Translates to: CQLMEEAPIKNSNGMRRITVSET*QPTFVA
Trigger: GGCCACAAAAGTTGGCTGCAATGTTTCAGATACAGT...AATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTGGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGGGCTGGTTGAACATCTaGATCAACAAGTTCTTTGTA +
Preference number: 5 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLGWLNI*INKFFV
Trigger: TACAAAGAACTTGTTGATCAAGATGTTCAACCAGCC...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGTGGAACTTGATCTGTTaGGCAATGATGATAAAAGGC +
Preference number: 5 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLWNLIC*AMMIKG
Trigger: GCCTTTTATCATCATTGCCAAACAGATCAAGTTCCA...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp ATTACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTCAAAGCGGTTGGGTTaGGTATGGATGAATTTTGTG +
Preference number: 5 (lower is better)
Translates to: ITGKQQGIQRFLWSSRIHSKRLG*VWMNFV
Trigger: CACAAAATTCATCCATACCAAACCCAACCGCTTTGA...ATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGTAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp ACTGGTAAACAACAGGGGATTCAGAGATTCCTGTGGTCTTCGAGAATTCATTTGTACATCATCCAACTTTaGAGAGAGTACGTGAAAAGT +
Preference number: 5 (lower is better)
Translates to: TGKQQGIQRFLWSSRIHLYIIQL*REYVKS
Trigger: ACTTTTCACGTACTCTCTCAAAAGTTGGATGATGTA...CAAATGAATTCTCGAAGACCACAGGAATCTCTGAATCCCCTGTTGTTTACCAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp TTCTCCATATTATCTTTATTTCACCCAAGGACCACGGATGTGGTCGTGATACACTCTCTCAAAACATCTTaGCCTTCAGGATATCCATAT +
Preference number: 5 (lower is better)
Translates to: FSILSLFHPRTTDVVVIHSLKTS*PSGYPY
Trigger: ATATGGATATCCTGAAGGCAAAGATGTTTTGAGAGA...GTGTATCACGACCACATCCGTGGTCCTTGGGTGAAATAAAGATAATATGGAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp TGCAAGACTGTTAACGAAAGGAGCAAACTTCAGAGTAACAAACCCACAGCAAATTGGAACTTGATCTGTTaGGCAATGATGATAAAAGGC +
Preference number: 5 (lower is better)
Translates to: CKTVNERSKLQSNKPTANWNLIC*AMMIKG
Trigger: GCCTTTTATCATCATTGCCAAACAGATCAAGTTCCA...ATTTGCTGTGGGTTTGTTACTCTGAAGTTTGCTCCTTTCGTTAACAGTCTTGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp AATTACGGCTTAACCAGCAGCACAGCCACCAAGCATATAAATTATCATGCACATTACATCATCCAACTTTaGAGAGAGTACGTGAAAAGT +
Preference number: 5 (lower is better)
Translates to: NYGLTSSTATKHINYHAHYIIQL*REYVKS
Trigger: ACTTTTCACGTACTCTCTCAAAAGTTGGATGATGTA...ATGTGCATGATAATTTATATGCTTGGTGGCTGTGCTGCTGGTTAAGCCGTAATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp CAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTTTAAGTCCTTTGGTTGAATaGCTCCAACGGTTACCTTCA +
Preference number: 5 (lower is better)
Translates to: QLMEEAPIKNSNGMRRILSPLVE*LQRLPS
Trigger: TGAAGGTAACCGTTGGAGCAATTCAACCAAAGGACT...TAAAATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000075054.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp GATACACAGCATCCTTCCCACCGAGTAGTATACAAGTGTTTGCTTTTGTATAATGGCTGGTTGAACATCTaGATCAACAAGTTCTTTGTA +
Preference number: 5 (lower is better)
Translates to: DTQHPSHRVVYKCLLLYNGWLNI*INKFFV
Trigger: TACAAAGAACTTGTTGATCAAGATGTTCAACCAGCC...ATTATACAAAAGCAAACACTTGTATACTACTCGGTGGGAAGGATGCTGTGTATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp CAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTTTACTTCAACCCTTCCCCTaGGTTAACTCCCAACATTAT +
Preference number: 5 (lower is better)
Translates to: QLMEEAPIKNSNGMRRILLQPFP*VNSQHY
Trigger: ATAATGTTGGGAGTTAACCAAGGGGAAGGGTTGAAG...TAAAATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp TGCAAGACTGTTAACGAAAGGAGCAAACTTCAGAGTAACAAACCCACAGCAAATTCTCTCAAAACATCTTaGCCTTCAGGATATCCATAT +
Preference number: 5 (lower is better)
Translates to: CKTVNERSKLQSNKPTANSLKTS*PSGYPY
Trigger: ATATGGATATCCTGAAGGCAAAGATGTTTTGAGAGA...ATTTGCTGTGGGTTTGTTACTCTGAAGTTTGCTCCTTTCGTTAACAGTCTTGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000193603.6
CDS-3UTR CAA 90 bp TGCCAATTGATGGAGGAAGCTCCTATTAAAAACTCCAATGGGATGAGAAGAATTCTGAGCTATTGCTCGTaGAAAAAGTCCTTCAGAATA +
Preference number: 5 (lower is better)
Translates to: CQLMEEAPIKNSNGMRRILSYCS*KKSFRI
Trigger: TATTCTGAAGGACTTTTTCAACGAGCAATAGCTCAG...AATTCTTCTCATCCCATTGGAGTTTTTAATAGGAGCTTCCTCCATCAATTGGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000108308.10
CDS TCA 72 bp TCTGGAGCATGGGTTAGGTCGTTGGTGGTCGTGCGCTaGGGGCTGCACCTCCGGTGGACATCATGTCTCCTC +
Preference number: 6 (lower is better)
Translates to: SGAWVRSLVVVR*GLHLRWTSCLL
Trigger: GAGGAGACATGATGTCCACCGGAGGTGCAGCCCTCAGCGCACGACCACCAACGACCTAACCCATGCTCCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000191835.2
ENSMUST00000193603.6
CDS GCA 72 bp CATGGGTTAGGTCGTTGGTGGTCGTGCGCTGAGGGCTaGACCTCCGGTGGACATCATGTCTCCTCTTATCCT +
Preference number: 6 (lower is better)
Translates to: HGLGRWWSCAEG*TSGGHHVSSYP
Trigger: AGGATAAGAGGAGACATGATGTCCACCGGAGGTGCAGCCCTCAGCGCACGACCACCAACGACCTAACCCATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000191835.2
ENSMUST00000193603.6
CDS CCA 72 bp CCCTCTGATCCACCGAGAAGGGGCTTGGTTGTTGCTTaGGATCATCCTGTTTGGCAGTGGGAAAGGCTGATG +
Preference number: 6 (lower is better)
Translates to: PSDPPRRGLVVA*DHPVWQWERLM
Trigger: CATCAGCCTTTCCCACTGCCAAACAGGATGATCCCAAGCAACAACCAAGCCCCTTCTCGGTGGATCAGAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000191835.2
ENSMUST00000193603.6
CDS CCA 72 bp ATCTGGGGGACAGGCGGTCCGAAGAACCACCTCATGTaGATGGATGGACTCACACTCGTGATCCAAGTCAGT +
Preference number: 6 (lower is better)
Translates to: IWGTGGPKNHLM*MDGLTLVIQVS
Trigger: ACTGACTTGGATCACGAGTGTGAGTCCATCCATCCACATGAGGTGGTTCTTCGGACCGCCTGTCCCCCAGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000191835.2
ENSMUST00000193603.6
CDS CAA 72 bp CTGTGGAGTAGTCCCTCTGATCCACCGAGAAGGGGCTaGGTTGTTGCTTGGGATCATCCTGTTTGGCAGTGG +
Preference number: 6 (lower is better)
Translates to: LWSSPSDPPRRG*VVAWDHPVWQW
Trigger: CCACTGCCAAACAGGATGATCCCAAGCAACAACCAAGCCCCTTCTCGGTGGATCAGAGGGACTACTCCACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000191835.2
ENSMUST00000193603.6
CDS CAA 90 bp CACTTAGCTCTGTGGAGTAGTCCCTCTGATCCACCGAGAAGGGGCTaGGTTGTTGCTTGGGATCATCCTGTTTGGCAGTGGGAAAGGCTG +
Preference number: 6 (lower is better)
Translates to: HLALWSSPSDPPRRG*VVAWDHPVWQWERL
Trigger: CAGCCTTTCCCACTGCCAAACAGGATGATCCCAAGCAACAACCAAGCCCCTTCTCGGTGGATCAGAGGGACTACTCCACAGAGCTAAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000191835.2
ENSMUST00000193603.6
CDS CCA 72 bp GACAGGCGGTCCGAAGAACCACCTCATGTGGATGGATaGACTCACACTCGTGATCCAAGTCAGTGTGCTTCA +
Preference number: 6 (lower is better)
Translates to: DRRSEEPPHVDG*THTRDPSQCAS
Trigger: TGAAGCACACTGACTTGGATCACGAGTGTGAGTCCATCCATCCACATGAGGTGGTTCTTCGGACCGCCTGTC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000191835.2
ENSMUST00000193603.6
CDS CAA 72 bp GGAGTAGTCCCTCTGATCCACCGAGAAGGGGCTTGGTaGTTGCTTGGGATCATCCTGTTTGGCAGTGGGAAA +
Preference number: 6 (lower is better)
Translates to: GVVPLIHREGAW*LLGIILFGSGK
Trigger: TTTCCCACTGCCAAACAGGATGATCCCAAGCAACAACCAAGCCCCTTCTCGGTGGATCAGAGGGACTACTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000191835.2
ENSMUST00000193603.6
CDS CCA 72 bp TGGTGGTTCTGGAGGCTGGAAACGATGTTCTCCTGTTaGTGGAGCGGCATATGGAACCCCAAGAAACTGAAT +
Preference number: 6 (lower is better)
Translates to: WWFWRLETMFSC*WSGIWNPKKLN
Trigger: ATTCAGTTTCTTGGGGTTCCATATGCCGCTCCACCAACAGGAGAACATCGTTTCCAGCCTCCAGAACCACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000191835.2
ENSMUST00000193603.6
CDS CCA 72 bp TGTAAGAGCCGCCATGGATGTACACCATCACTGGTTTaGGACCCCCACTGTCCCGAATATCATCTTCAGTTG +
Preference number: 6 (lower is better)
Translates to: CKSRHGCTPSLV*DPHCPEYHLQL
Trigger: CAACTGAAGATGATATTCGGGACAGTGGGGGTCCCAAACCAGTGATGGTGTACATCCATGGCGGCTCTTACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108308.10
ENSMUST00000191835.2
CDS TCA 72 bp GGTTACCTTCAGAATAATGGGATAAAGTCAGCAGGTTaGCACATGAACCCCCAGCGCCTGATCCAAACACAG +
Preference number: 6 (lower is better)
Translates to: GYLQNNGIKSAG*HMNPQRLIQTQ
Trigger: CTGTGTTTGGATCAGGCGCTGGGGGTTCATGTGTCAACCTGCTGACTTTATCCCATTATTCTGAAGGTAACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000075054.10
ENSMUST00000193603.6
CDS CCA 72 bp CTGGAAACGATGTTCTCCTGTTGGTGGAGCGGCATATaGAACCCCAAGAAACTGAATGACAGGACCCAAAAT +
Preference number: 6 (lower is better)
Translates to: LETMFSCWWSGI*NPKKLNDRTQN
Trigger: ATTTTGGGTCCTGTCATTCAGTTTCTTGGGGTTCCATATGCCGCTCCACCAACAGGAGAACATCGTTTCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000191835.2
ENSMUST00000193603.6
CDS TCA 72 bp AGAACCACCTCATGTGGATGGATGGACTCACACTCGTaGTCCAAGTCAGTGTGCTTCATTTGGAGAGACATA +
Preference number: 6 (lower is better)
Translates to: RTTSCGWMDSHS*SKSVCFIWRDI
Trigger: TATGTCTCTCCAAATGAAGCACACTGACTTGGATCACGAGTGTGAGTCCATCCATCCACATGAGGTGGTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000191835.2
ENSMUST00000193603.6
CDS CAA 72 bp TCCAAAGGCTATGTGGTATCGGGCTGGTTGAACATCTaGATCAACAAGTTCTTTGTAAGGCTTCTTCTGCAG +
Preference number: 6 (lower is better)
Translates to: SKGYVVSGWLNI*INKFFVRLLLQ
Trigger: CTGCAGAAGAAGCCTTACAAAGAACTTGTTGATCAAGATGTTCAACCAGCCCGATACCACATAGCCTTTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000191835.2
ENSMUST00000193603.6
CDS CCA 72 bp ATTCTTCCTTGTAGGTCTGAGAGTGATGTCCGTGGATaGCACTTTAGTTGTTGTCGAGGTATACTGAGAAAT +
Preference number: 6 (lower is better)
Translates to: ILPCRSESDVRG*HFSCCRGILRN
Trigger: ATTTCTCAGTATACCTCGACAACAACTAAAGTGCCATCCACGGACATCACTCTCAGACCTACAAGGAAGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000191835.2
ENSMUST00000193603.6
CDS TCA 72 bp TGTCCTCCAGTAAATGTGTTGAATGTATGTAAGGGCTaGATCCCTGGTATAGTGTTGGGAATCATTGTGATG +
Preference number: 6 (lower is better)
Translates to: CPPVNVLNVCKG*IPGIVLGIIVM
Trigger: CATCACAATGATTCCCAACACTATACCAGGGATTCAGCCCTTACATACATTCAACACATTTACTGGAGGACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000191835.2
ENSMUST00000193603.6
CDS CCA 72 bp AATTCCCCTAATCTTGCCAAAGTTAGTAGTAACCAATaGGTCTACATCATCCAACTTTTGAGAGAGTACGTG +
Preference number: 6 (lower is better)
Translates to: NSPNLAKVSSNQ*VYIIQLLREYV
Trigger: CACGTACTCTCTCAAAAGTTGGATGATGTAGACCCATTGGTTACTACTAACTTTGGCAAGATTAGGGGAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000191835.2
ENSMUST00000193603.6
CDS TCA 72 bp AACAAAATTAGAAACAGCAAAGTCGAAATCACTGGCTaGTACACCATCATCACTATCTACTATATTTTCGAC +
Preference number: 6 (lower is better)
Translates to: NKIRNSKVEITG*YTIITIYYIFD
Trigger: GTCGAAAATATAGTAGATAGTGATGATGGTGTATCAGCCAGTGATTTCGACTTTGCTGTTTCTAATTTTGTT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000075054.10
ENSMUST00000108308.10
ENSMUST00000191835.2
ENSMUST00000193603.6