Pregenerated sensors for NKX6-3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063672Ensembl transcript IDs: ENSMUST00000071588.8
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGGAGGAGTGTGGCATTCAGAGCCCTTCTCTCTGTCCTGCTGAGATaGTCCCAAACTCTGATGGATGCCCTGGGTTGCCTTGGTGGGTAC | + |
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Preference number: 1 (lower is better) Translates to: WRSVAFRALLSVLLR*SQTLMDALGCLGGY Trigger: GTACCCACCAAGGCAACCCAGGGCATCCATCAGAGTTTGGGAGCATCTCAGCAGGACAGAGAGAAGGGCTCTGAATGCCACACTCCTCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| 3UTR CCA 90 bp | CAACCCCTTATTCTGCCTAGGGTTCGCCCAGTCTGGTGTCCCTATTaGAGGAGTGTGGCATTCAGAGCCCTTCTCTCTGTCCTGCTGAGA | + |
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Preference number: 1 (lower is better) Translates to: QPLILPRVRPVWCPY*RSVAFRALLSVLLR Trigger: TCTCAGCAGGACAGAGAGAAGGGCTCTGAATGCCACACTCCTCCAATAGGGACACCAGACTGGGCGAACCCTAGGCAGAATAAGGGGTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| 3UTR TCA 90 bp | GGGATCTGCGTTGAAAGTAAAGTGCAGTTGGGGGTCACAGGGTCCTaGAACTCAGGGTTAGAAGAGTTCCTATTTTCAGGACCCGCCCCC | + |
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Preference number: 1 (lower is better) Translates to: GICVESKVQLGVTGS*NSGLEEFLFSGPAP Trigger: GGGGGCGGGTCCTGAAAATAGGAACTCTTCTAACCCTGAGTTTCAGGACCCTGTGACCCCCAACTGCACTTTACTTTCAACGCAGATCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| 3UTR CCA 90 bp | GCTGAGATGCTCCCAAACTCTGATGGATGCCCTGGGTTGCCTTGGTaGGTACCTCCCAGAGACAACAAAACCTTAGGATTTTCTCATCTG | + |
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Preference number: 1 (lower is better) Translates to: AEMLPNSDGCPGLPW*VPPRDNKTLGFSHL Trigger: CAGATGAGAAAATCCTAAGGTTTTGTTGTCTCTGGGAGGTACCCACCAAGGCAACCCAGGGCATCCATCAGAGTTTGGGAGCATCTCAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| 3UTR-3UTR GCA 90 bp | AGCTGCGAACCCAGCTCCAAGTCTTCCAGAAGAGCAGCAGTAACCGCCGAGCCATCAGGCTCCGTCTTTTaGTTTGCAGTCCCAGCCTAC | + |
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Preference number: 2 (lower is better) Translates to: SCEPSSKSSRRAAVTAEPSGSVF*FAVPAY Trigger: GTAGGCTGGGACTGCAAAGCAAAAGACGGAGCCTGA...TGGCTCGGCGGTTACTGCTGCTCTTCTGGAAGACTTGGAGCTGGGTTCGCAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| 3UTR-3UTR TCA 90 bp | TGCCTGGCATCCCCTCGTCTCTTTCCCAGAGTCTTCCTTGGTACAGTGGGATCTGGGGTCACAGGGTCCTaGAACTCAGGGTTAGAAGAG | + |
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Preference number: 2 (lower is better) Translates to: CLASPRLFPRVFLGTVGSGVTGS*NSGLEE Trigger: CTCTTCTAACCCTGAGTTTCAGGACCCTGTGACCCC...AGATCCCACTGTACCAAGGAAGACTCTGGGAAAGAGACGAGGGGATGCCAGGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| 3UTR-3UTR GCA 90 bp | TGCCTGGCATCCCCTCGTCTCTTTCCCAGAGTCTTCCTTGGTACAGTGGGATCTAATGACAGAGAGGTGTaGCATCTTCTCCCTCGGGGC | + |
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Preference number: 2 (lower is better) Translates to: CLASPRLFPRVFLGTVGSNDREV*HLLPRG Trigger: GCCCCGAGGGAGAAGATGGCACACCTCTCTGTCATT...AGATCCCACTGTACCAAGGAAGACTCTGGGAAAGAGACGAGGGGATGCCAGGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| 3UTR-3UTR CCA 90 bp | CTGATGGATGCCCTGGGTTGCCTTGGTGGGTACCTCCCAGAGACAACAAAACCTTCCCAGAGTCTTCCTTaGTACAGTGGGATCTGCGTT | + |
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Preference number: 2 (lower is better) Translates to: LMDALGCLGGYLPETTKPSQSLP*YSGICV Trigger: AACGCAGATCCCACTGTACCAAGGAAGACTCTGGGA...AGGTTTTGTTGTCTCTGGGAGGTACCCACCAAGGCAACCCAGGGCATCCATCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| 3UTR CAA 90 bp | CCTCGTCTCTTTCCCAGAGTCTTCCTTGGTACAGTGGGATCTGCGTaGAAAGTAAAGTGCAGTTGGGGGTCACAGGGTCCTGAAACTCAG | + |
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Preference number: 2 (lower is better) Translates to: PRLFPRVFLGTVGSA*KVKCSWGSQGPETQ Trigger: CTGAGTTTCAGGACCCTGTGACCCCCAACTGCACTTTACTTTCAACGCAGATCCCACTGTACCAAGGAAGACTCTGGGAAAGAGACGAGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| 3UTR CAA 90 bp | GGATCATTAGAAAGCACATCTGGACTTCAGGCTCCGTCTTTTGCTTaGCAGTCCCAGCCTACGACTAGGTGCGGTACTTTGTGTGACTCC | + |
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Preference number: 2 (lower is better) Translates to: GSLESTSGLQAPSFA*QSQPTTRCGTLCDS Trigger: GGAGTCACACAAAGTACCGCACCTAGTCGTAGGCTGGGACTGCAAAGCAAAAGACGGAGCCTGAAGTCCAGATGTGCTTTCTAATGATCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| 3UTR GCA 72 bp | CCAACTCCTCTTCTCTGGTCCCTGCCCACAGCGGACTaGACGGAAAGGGGAGGGGAAGGCTGGTCGGCGCGG | + |
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Preference number: 3 (lower is better) Translates to: PTPLLWSLPTAD*TERGGEGWSAR Trigger: CCGCGCCGACCAGCCTTCCCCTCCCCTTTCCGTGCAGTCCGCTGTGGGCAGGGACCAGAGAAGAGGAGTTGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| 3UTR GCA 72 bp | CTCTGTCCTGCTGAGATGCTCCCAAACTCTGATGGATaGCCTGGGTTGCCTTGGTGGGTACCTCCCAGAGAC | + |
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Preference number: 3 (lower is better) Translates to: LCPAEMLPNSDG*PGLPWWVPPRD Trigger: GTCTCTGGGAGGTACCCACCAAGGCAACCCAGGGCATCCATCAGAGTTTGGGAGCATCTCAGCAGGACAGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| 3UTR CCA 72 bp | ATTCTGCCTAGGGTTCGCCCAGTCTGGTGTCCCTATTaGAGGAGTGTGGCATTCAGAGCCCTTCTCTCTGTC | + |
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Preference number: 3 (lower is better) Translates to: ILPRVRPVWCPY*RSVAFRALLSV Trigger: GACAGAGAGAAGGGCTCTGAATGCCACACTCCTCCAATAGGGACACCAGACTGGGCGAACCCTAGGCAGAAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| 3UTR TCA 72 bp | ACTAGGTGCGGTACTTTGTGTGACTCCCTAACCAGCTaGTCCTTAGAGGGGAAAACAGCGCATCTGGAGCGC | + |
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Preference number: 3 (lower is better) Translates to: TRCGTLCDSLTS*SLEGKTAHLER Trigger: GCGCTCCAGATGCGCTGTTTTCCCCTCTAAGGATCAGCTGGTTAGGGAGTCACACAAAGTACCGCACCTAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| 3UTR GCA 72 bp | CTGAGATGCTCCCAAACTCTGATGGATGCCCTGGGTTaGCTTGGTGGGTACCTCCCAGAGACAACAAAACCT | + |
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Preference number: 3 (lower is better) Translates to: LRCSQTLMDALG*LGGYLPETTKP Trigger: AGGTTTTGTTGTCTCTGGGAGGTACCCACCAAGGCAACCCAGGGCATCCATCAGAGTTTGGGAGCATCTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| 3UTR GCA 72 bp | TTCCTTGGTACAGTGGGATCTGCGTTGAAAGTAAAGTaGAGTTGGGGGTCACAGGGTCCTGAAACTCAGGGT | + |
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Preference number: 3 (lower is better) Translates to: FLGTVGSALKVK*SWGSQGPETQG Trigger: ACCCTGAGTTTCAGGACCCTGTGACCCCCAACTGCACTTTACTTTCAACGCAGATCCCACTGTACCAAGGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| 3UTR GCA 72 bp | TCTCTTTCCCAGAGTCTTCCTTGGTACAGTGGGATCTaGGTTGAAAGTAAAGTGCAGTTGGGGGTCACAGGG | + |
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Preference number: 3 (lower is better) Translates to: SLSQSLPWYSGI*VESKVQLGVTG Trigger: CCCTGTGACCCCCAACTGCACTTTACTTTCAACGCAGATCCCACTGTACCAAGGAAGACTCTGGGAAAGAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| 3UTR CCA 72 bp | CTCCCAAACTCTGATGGATGCCCTGGGTTGCCTTGGTaGGTACCTCCCAGAGACAACAAAACCTTAGGATTT | + |
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Preference number: 3 (lower is better) Translates to: LPNSDGCPGLPW*VPPRDNKTLGF Trigger: AAATCCTAAGGTTTTGTTGTCTCTGGGAGGTACCCACCAAGGCAACCCAGGGCATCCATCAGAGTTTGGGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| 3UTR TCA 72 bp | GTTGAAAGTAAAGTGCAGTTGGGGGTCACAGGGTCCTaGAACTCAGGGTTAGAAGAGTTCCTATTTTCAGGA | + |
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Preference number: 3 (lower is better) Translates to: VESKVQLGVTGS*NSGLEEFLFSG Trigger: TCCTGAAAATAGGAACTCTTCTAACCCTGAGTTTCAGGACCCTGTGACCCCCAACTGCACTTTACTTTCAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR TCA 90 bp | TGGTCCCTGCCCACAGCGGACTGCACGGAAAGGGGAGGGGAAGGCTGGTCGGCGTGTGCGCGCCCAGGCTaGGCACGGAGAAGGCGGCCC | + |
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Preference number: 4 (lower is better) Translates to: WSLPTADCTERGGEGWSACARPG*ARRRRP Trigger: GGGCCGCCTTCTCCGTGCTCAGCCTGGGCGCGCACA...CGCCGACCAGCCTTCCCCTCCCCTTTCCGTGCAGTCCGCTGTGGGCAGGGACCA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR TCA 90 bp | TGGTCCCTGCCCACAGCGGACTGCACGGAAAGGGGAGGGGAAGGCTGGTCGGCGCCGGGGTGTGGAGGATaGGGGCTCCAGGGCGCTCTT | + |
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Preference number: 4 (lower is better) Translates to: WSLPTADCTERGGEGWSAPGCGG*GLQGAL Trigger: AAGAGCGCCCTGGAGCCCTCATCCTCCACACCCCGG...CGCCGACCAGCCTTCCCCTCCCCTTTCCGTGCAGTCCGCTGTGGGCAGGGACCA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR GCA 90 bp | GGTCCCTGCCCACAGCGGACTGCACGGAAAGGGGAGGGGAAGGCTGGTCGGCGCGAGTCCACCAAAGCCTaGCACGTGGGGGTAGCCAGA | + |
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Preference number: 4 (lower is better) Translates to: GPCPQRTARKGEGKAGRRESTKA*HVGVAR Trigger: TCTGGCTACCCCCACGTGGCAGGCTTTGGTGGACTC...GCGCCGACCAGCCTTCCCCTCCCCTTTCCGTGCAGTCCGCTGTGGGCAGGGACC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR GCA 90 bp | CTTCTCTGGTCCCTGCCCACAGCGGACTGCACGGAAAGGGGAGGGGAAGGCTGGTGCATGGCCGAGCGCTaGCTCTCCAGTCCTGGCCTG | + |
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Preference number: 4 (lower is better) Translates to: LLWSLPTADCTERGGEGWCMAER*LSSPGL Trigger: CAGGCCAGGACTGGAGAGGCAGCGCTCGGCCATGCA...CCAGCCTTCCCCTCCCCTTTCCGTGCAGTCCGCTGTGGGCAGGGACCAGAGAAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR CCA 90 bp | GGTCCCTGCCCACAGCGGACTGCACGGAAAGGGGAGGGGAAGGCTGGTCGGCGCATGTCAGTGATTCCATaGGGAGTCCCAGCCGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: GPCPQRTARKGEGKAGRRMSVIP*GVPAAS Trigger: GCTGGCGGCTGGGACTCCCCATGGAATCACTGACAT...GCGCCGACCAGCCTTCCCCTCCCCTTTCCGTGCAGTCCGCTGTGGGCAGGGACC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR CCA 90 bp | TGGTCCCTGCCCACAGCGGACTGCACGGAAAGGGGAGGGGAAGGCTGGTCGGCGGTCACTCAGGGGGTCTaGAGTGTTGCTGCATGGCCG | + |
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Preference number: 4 (lower is better) Translates to: WSLPTADCTERGGEGWSAVTQGV*SVAAWP Trigger: CGGCCATGCAGCAACACTCCAGACCCCCTGAGTGAC...CGCCGACCAGCCTTCCCCTCCCCTTTCCGTGCAGTCCGCTGTGGGCAGGGACCA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR CCA 90 bp | CTTCTCTGGTCCCTGCCCACAGCGGACTGCACGGAAAGGGGAGGGGAAGGCTGGCAGCCTCGCCCGCTCTaGGCCAGCCAAGTACTTGGT | + |
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Preference number: 4 (lower is better) Translates to: LLWSLPTADCTERGGEGWQPRPL*ASQVLG Trigger: ACCAAGTACTTGGCTGGCCCAGAGCGGGCGAGGCTG...CCAGCCTTCCCCTCCCCTTTCCGTGCAGTCCGCTGTGGGCAGGGACCAGAGAAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR CCA 90 bp | GAGGGGAGGAATGACAGAGAGGTGTGCCATCTTCTCCCTCGGGGCACTCACCATCCGGGGCCCGGGGTGTaGAGGATGAGGGCTCCAGGG | + |
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Preference number: 4 (lower is better) Translates to: EGRNDREVCHLLPRGTHHPGPGV*RMRAPG Trigger: CCCTGGAGCCCTCATCCTCCACACCCCGGGCCCCGG...ATGGTGAGTGCCCCGAGGGAGAAGATGGCACACCTCTCTGTCATTCCTCCCCTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR TCA 90 bp | TGGTCCCTGCCCACAGCGGACTGCACGGAAAGGGGAGGGGAAGGCTGGTCGGCGTCTGGAACCACACCTTaGCCTGTGACTCCGTCATGC | + |
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Preference number: 4 (lower is better) Translates to: WSLPTADCTERGGEGWSASGTTP*PVTPSC Trigger: GCATGACGGAGTCACAGGTCAAGGTGTGGTTCCAGA...CGCCGACCAGCCTTCCCCTCCCCTTTCCGTGCAGTCCGCTGTGGGCAGGGACCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR TCA 90 bp | TCTTCTCTGGTCCCTGCCCACAGCGGACTGCACGGAAAGGGGAGGGGAAGGCTGCCACACCTTGACCTGTaGCTCCGTCATGCCCAGGGA | + |
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Preference number: 4 (lower is better) Translates to: SSLVPAHSGLHGKGRGRLPHLDL*LRHAQG Trigger: TCCCTGGGCATGACGGAGTCACAGGTCAAGGTGTGG...CAGCCTTCCCCTCCCCTTTCCGTGCAGTCCGCTGTGGGCAGGGACCAGAGAAGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR CCA 90 bp | TGGTCCCTGCCCACAGCGGACTGCACGGAAAGGGGAGGGGAAGGCTGGTCGGCGACTCATTTCCAGCCTTaGAAAAGCTCCCCACCTGGG | + |
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Preference number: 4 (lower is better) Translates to: WSLPTADCTERGGEGWSATHFQP*KSSPPG Trigger: CCCAGGTGGGGAGCTTTTCCAAGGCTGGAAATGAGT...CGCCGACCAGCCTTCCCCTCCCCTTTCCGTGCAGTCCGCTGTGGGCAGGGACCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR TCA 90 bp | AGCTGCGAACCCAGCTCCAAGTCTTCCAGAAGAGCAGCAGTAACCGCCGAGCCAAGACGCCCTGGGAGCTaGGTCCACCAAAGCCTGCCA | + |
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Preference number: 4 (lower is better) Translates to: SCEPSSKSSRRAAVTAEPRRPGS*VHQSLP Trigger: TGGCAGGCTTTGGTGGACTCAGCTCCCAGGGCGTCT...TGGCTCGGCGGTTACTGCTGCTCTTCTGGAAGACTTGGAGCTGGGTTCGCAGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR GCA 90 bp | CCCAGCGGTGGGATCATTAGAAAGCACATCTGGACTTCAGGCTCCGTCTTTTGCGAGAAGGCGGCCCGGTaGTTGCGCAGCAGCAGGCGG | + |
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Preference number: 4 (lower is better) Translates to: PSGGIIRKHIWTSGSVFCEKAAR*LRSSRR Trigger: CCGCCTGCTGCTGCGCAAGCACCGGGCCGCCTTCTC...GCAAAAGACGGAGCCTGAAGTCCAGATGTGCTTTCTAATGATCCCACCGCTGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR GCA 90 bp | CCCCCAGCGGTGGGATCATTAGAAAGCACATCTGGACTTCAGGCTCCGTCTTTTGTCCTGGCCTGTGTCTaGCCAGCAGTTCCGGGTCCG | + |
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Preference number: 4 (lower is better) Translates to: PPAVGSLESTSGLQAPSFVLACV*PAVPGP Trigger: CGGACCCGGAACTGCTGGGCAGACACAGGCCAGGAC...AAAAGACGGAGCCTGAAGTCCAGATGTGCTTTCTAATGATCCCACCGCTGGGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR CCA 90 bp | TCTTCTCTGGTCCCTGCCCACAGCGGACTGCACGGAAAGGGGAGGGGAAGGCTGCCGAGTACTGGCACATaGGAGCCTTCATTTCTGAGA | + |
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Preference number: 4 (lower is better) Translates to: SSLVPAHSGLHGKGRGRLPSTGT*EPSFLR Trigger: TCTCAGAAATGAAGGCTCCCATGTGCCAGTACTCGG...CAGCCTTCCCCTCCCCTTTCCGTGCAGTCCGCTGTGGGCAGGGACCAGAGAAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR TCA 90 bp | AGCTGCGAACCCAGCTCCAAGTCTTCCAGAAGAGCAGCAGTAACCGCCGAGCCATGCTCAGGATGTCAGTaGTTCCATGGGGAGTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: SCEPSSKSSRRAAVTAEPCSGCQ*FHGESQ Trigger: CTGGGACTCCCCATGGAATCACTGACATCCTGAGCA...TGGCTCGGCGGTTACTGCTGCTCTTCTGGAAGACTTGGAGCTGGGTTCGCAGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR GCA 90 bp | CCCCCAGCGGTGGGATCATTAGAAAGCACATCTGGACTTCAGGCTCCGTCTTTTCCTGTGACTCCGTCATaGCCAGGGAATAAGCCAGCC | + |
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Preference number: 4 (lower is better) Translates to: PPAVGSLESTSGLQAPSFPVTPS*PGNKPA Trigger: GGCTGGCTTATTCCCTGGGCATGACGGAGTCACAGG...AAAAGACGGAGCCTGAAGTCCAGATGTGCTTTCTAATGATCCCACCGCTGGGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR CCA 90 bp | GTGTCCAGCAGCACTCCCAACCCCTTATTCTGCCTAGGGTTCGCCCAGTCTGGTTTCTGCACCGAGTACTaGCACATGGGAGCCTTCATT | + |
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Preference number: 4 (lower is better) Translates to: VSSSTPNPLFCLGFAQSGFCTEY*HMGAFI Trigger: AATGAAGGCTCCCATGTGCCAGTACTCGGTGCAGAA...ACCAGACTGGGCGAACCCTAGGCAGAATAAGGGGTTGGGAGTGCTGCTGGACAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR CCA 90 bp | CCCAGCGGTGGGATCATTAGAAAGCACATCTGGACTTCAGGCTCCGTCTTTTGCTCCAGGGCAAAGATCTaGTGGCCCGTGAAGGTAGGG | + |
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Preference number: 4 (lower is better) Translates to: PSGGIIRKHIWTSGSVFCSRAKI*WPVKVG Trigger: CCCTACCTTCACGGGCCACCAGATCTTTGCCCTGGA...GCAAAAGACGGAGCCTGAAGTCCAGATGTGCTTTCTAATGATCCCACCGCTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| 3UTR CAA 72 bp | GCTGAGATGCTCCCAAACTCTGATGGATGCCCTGGGTaGCCTTGGTGGGTACCTCCCAGAGACAACAAAACC | + |
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Preference number: 4 (lower is better) Translates to: AEMLPNSDGCPG*PWWVPPRDNKT Trigger: GGTTTTGTTGTCTCTGGGAGGTACCCACCAAGGCAACCCAGGGCATCCATCAGAGTTTGGGAGCATCTCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR TCA 90 bp | CCCAGCGGTGGGATCATTAGAAAGCACATCTGGACTTCAGGCTCCGTCTTTTGCGGGAGCCTTCATTTCTaGGAACTGGGCCAGCTGTGT | + |
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Preference number: 4 (lower is better) Translates to: PSGGIIRKHIWTSGSVFCGSLHF*ELGQLC Trigger: ACACAGCTGGCCCAGTTCTCAGAAATGAAGGCTCCC...GCAAAAGACGGAGCCTGAAGTCCAGATGTGCTTTCTAATGATCCCACCGCTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR CCA 90 bp | GTGGGATCATTAGAAAGCACATCTGGACTTCAGGCTCCGTCTTTTGCTTTGCAGAGGGCAAAGATCTGGTaGCCCGTGAAGGTAGGGCGG | + |
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Preference number: 4 (lower is better) Translates to: VGSLESTSGLQAPSFALQRAKIW*PVKVGR Trigger: CCGCCCTACCTTCACGGGCCACCAGATCTTTGCCCT...CTGCAAAGCAAAAGACGGAGCCTGAAGTCCAGATGTGCTTTCTAATGATCCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR CCA 90 bp | TGCCTGGCATCCCCTCGTCTCTTTCCCAGAGTCTTCCTTGGTACAGTGGGATCTTTCATTTCTGAGAACTaGGCCAGCTGTGTGTTGTTC | + |
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Preference number: 4 (lower is better) Translates to: CLASPRLFPRVFLGTVGSFISEN*ASCVLF Trigger: GAACAACACACAGCTGGCCCAGTTCTCAGAAATGAA...AGATCCCACTGTACCAAGGAAGACTCTGGGAAAGAGACGAGGGGATGCCAGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR CCA 90 bp | CCCCCAGCGGTGGGATCATTAGAAAGCACATCTGGACTTCAGGCTCCGTCTTTTGGCCAGCCAAGTACTTaGTCTGCTCAAAGGTTTTCT | + |
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Preference number: 4 (lower is better) Translates to: PPAVGSLESTSGLQAPSFGQPST*SAQRFS Trigger: AGAAAACCTTTGAGCAGACCAAGTACTTGGCTGGCC...AAAAGACGGAGCCTGAAGTCCAGATGTGCTTTCTAATGATCCCACCGCTGGGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| 3UTR CAA 72 bp | TTTCCCAGAGTCTTCCTTGGTACAGTGGGATCTGCGTaGAAAGTAAAGTGCAGTTGGGGGTCACAGGGTCCT | + |
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Preference number: 4 (lower is better) Translates to: FPRVFLGTVGSA*KVKCSWGSQGP Trigger: AGGACCCTGTGACCCCCAACTGCACTTTACTTTCAACGCAGATCCCACTGTACCAAGGAAGACTCTGGGAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR CCA 90 bp | GTGGGATCATTAGAAAGCACATCTGGACTTCAGGCTCCGTCTTTTGCTTTGCAGGTGTGCTTTTTCTTGTaGATAGTGTCACTCAGGGGG | + |
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Preference number: 4 (lower is better) Translates to: VGSLESTSGLQAPSFALQVCFFL*IVSLRG Trigger: CCCCCTGAGTGACACTATCCACAAGAAAAAGCACAC...CTGCAAAGCAAAAGACGGAGCCTGAAGTCCAGATGTGCTTTCTAATGATCCCAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS GCA 90 bp | GTTGCTGCATGGCCGAGCGCTGCCTCTCCAGTCCTGGCCTGTGTCTaGCCAGCAGTTCCGGGTCCGGGTCGGGTACTCATTTCCAGCCTT | + |
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Preference number: 5 (lower is better) Translates to: VAAWPSAASPVLACV*PAVPGPGRVLISSL Trigger: AAGGCTGGAAATGAGTACCCGACCCGGACCCGGAACTGCTGGGCAGACACAGGCCAGGACTGGAGAGGCAGCGCTCGGCCATGCAGCAAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS TCA 90 bp | CATGGGGAGTCCCAGCCGCCAGCTGGGGGCCAAGTCCCGGAGGGCTaGGCTTGTAGAAAGAGTTCTGCACCGAGTACTGGCACATGGGAG | + |
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Preference number: 5 (lower is better) Translates to: HGESQPPAGGQVPEG*ACRKSSAPSTGTWE Trigger: CTCCCATGTGCCAGTACTCGGTGCAGAACTCTTTCTACAAGCTCAGCCCTCCGGGACTTGGCCCCCAGCTGGCGGCTGGGACTCCCCATG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS CCA 90 bp | AGGGCGGGTGTGCTTTTTCTTGTGGATAGTGTCACTCAGGGGGTCTaGAGTGTTGCTGCATGGCCGAGCGCTGCCTCTCCAGTCCTGGCC | + |
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Preference number: 5 (lower is better) Translates to: RAGVLFLVDSVTQGV*SVAAWPSAASPVLA Trigger: GGCCAGGACTGGAGAGGCAGCGCTCGGCCATGCAGCAACACTCCAGACCCCCTGAGTGACACTATCCACAAGAAAAAGCACACCCGCCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS CCA 90 bp | AAGATCTGGTGGCCCGTGAAGGTAGGGCGGGTGTGCTTTTTCTTGTaGATAGTGTCACTCAGGGGGTCTGGAGTGTTGCTGCATGGCCGA | + |
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Preference number: 5 (lower is better) Translates to: KIWWPVKVGRVCFFL*IVSLRGSGVLLHGR Trigger: TCGGCCATGCAGCAACACTCCAGACCCCCTGAGTGACACTATCCACAAGAAAAAGCACACCCGCCCTACCTTCACGGGCCACCAGATCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR CAA 90 bp | CCCAGCGGTGGGATCATTAGAAAGCACATCTGGACTTCAGGCTCCGTCTTTTGCTGGGCCAGCTGTGTGTaGTTCAGGAGGAAGGTCCCC | + |
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Preference number: 5 (lower is better) Translates to: PSGGIIRKHIWTSGSVFCWASCV*FRRKVP Trigger: GGGGACCTTCCTCCTGAACAACACACAGCTGGCCCA...GCAAAAGACGGAGCCTGAAGTCCAGATGTGCTTTCTAATGATCCCACCGCTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR CAA 90 bp | GTGTCCAGCAGCACTCCCAACCCCTTATTCTGCCTAGGGTTCGCCCAGTCTGGTGGGCCAGCCAAGTACTaGGTCTGCTCAAAGGTTTTC | + |
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Preference number: 5 (lower is better) Translates to: VSSSTPNPLFCLGFAQSGGPAKY*VCSKVF Trigger: GAAAACCTTTGAGCAGACCAAGTACTTGGCTGGCCC...ACCAGACTGGGCGAACCCTAGGCAGAATAAGGGGTTGGGAGTGCTGCTGGACAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR CAA 90 bp | GTGTCCAGCAGCACTCCCAACCCCTTATTCTGCCTAGGGTTCGCCCAGTCTGGTTTCTGGAACCACACCTaGACCTGTGACTCCGTCATG | + |
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Preference number: 5 (lower is better) Translates to: VSSSTPNPLFCLGFAQSGFWNHT*TCDSVM Trigger: CATGACGGAGTCACAGGTCAAGGTGTGGTTCCAGAA...ACCAGACTGGGCGAACCCTAGGCAGAATAAGGGGTTGGGAGTGCTGCTGGACAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR CAA 90 bp | CCCAGCGGTGGGATCATTAGAAAGCACATCTGGACTTCAGGCTCCGTCTTTTGCTCCGGGTCCAGCGGCTaGTTGTACTCATCGTCCTCG | + |
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Preference number: 5 (lower is better) Translates to: PSGGIIRKHIWTSGSVFCSGSSG*LYSSSS Trigger: CGAGGACGATGAGTACAACAAGCCGCTGGACCCGGA...GCAAAAGACGGAGCCTGAAGTCCAGATGTGCTTTCTAATGATCCCACCGCTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR CAA 90 bp | CCCAGCGGTGGGATCATTAGAAAGCACATCTGGACTTCAGGCTCCGTCTTTTGCGGGTCCAGCGGCTTGTaGTACTCATCGTCCTCGTTC | + |
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Preference number: 5 (lower is better) Translates to: PSGGIIRKHIWTSGSVFCGSSGL*YSSSSF Trigger: GAACGAGGACGATGAGTACAACAAGCCGCTGGACCC...GCAAAAGACGGAGCCTGAAGTCCAGATGTGCTTTCTAATGATCCCACCGCTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR CAA 90 bp | CCCCCAGCGGTGGGATCATTAGAAAGCACATCTGGACTTCAGGCTCCGTCTTTTCGGGTGTGCTTTTTCTaGTGGATAGTGTCACTCAGG | + |
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Preference number: 5 (lower is better) Translates to: PPAVGSLESTSGLQAPSFRVCFF*WIVSLR Trigger: CCTGAGTGACACTATCCACAAGAAAAAGCACACCCG...AAAAGACGGAGCCTGAAGTCCAGATGTGCTTTCTAATGATCCCACCGCTGGGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS-3UTR CAA 90 bp | GTGGGATCATTAGAAAGCACATCTGGACTTCAGGCTCCGTCTTTTGCTTTGCAGTACTCATTTCCAGCCTaGGAAAAGCTCCCCACCTGG | + |
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Preference number: 5 (lower is better) Translates to: VGSLESTSGLQAPSFALQYSFPA*EKLPTW Trigger: CCAGGTGGGGAGCTTTTCCAAGGCTGGAAATGAGTA...CTGCAAAGCAAAAGACGGAGCCTGAAGTCCAGATGTGCTTTCTAATGATCCCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS GCA 72 bp | TGCGCGCCCAGGCTGAGCACGGAGAAGGCGGCCCGGTaGTTGCGCAGCAGCAGGCGGATCTTCTCGTCGTCC | + |
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Preference number: 6 (lower is better) Translates to: CAPRLSTEKAAR*LRSSRRIFSSS Trigger: GGACGACGAGAAGATCCGCCTGCTGCTGCGCAAGCACCGGGCCGCCTTCTCCGTGCTCAGCCTGGGCGCGCA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS GCA 72 bp | TGGCCGAGCGCTGCCTCTCCAGTCCTGGCCTGTGTCTaGCCAGCAGTTCCGGGTCCGGGTCGGGTACTCATT | + |
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Preference number: 6 (lower is better) Translates to: WPSAASPVLACV*PAVPGPGRVLI Trigger: AATGAGTACCCGACCCGGACCCGGAACTGCTGGGCAGACACAGGCCAGGACTGGAGAGGCAGCGCTCGGCCA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS TCA 72 bp | TCCCAGCCGCCAGCTGGGGGCCAAGTCCCGGAGGGCTaGGCTTGTAGAAAGAGTTCTGCACCGAGTACTGGC | + |
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Preference number: 6 (lower is better) Translates to: SQPPAGGQVPEG*ACRKSSAPSTG Trigger: GCCAGTACTCGGTGCAGAACTCTTTCTACAAGCTCAGCCCTCCGGGACTTGGCCCCCAGCTGGCGGCTGGGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS GCA 72 bp | CAAAGCCTGCCACGTGGGGGTAGCCAGAGAGGAGGCTaGTGTTCGGGGTGGCAACCGGTCTGCTCAGGATGT | + |
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Preference number: 6 (lower is better) Translates to: QSLPRGGSQRGG*CSGWQPVCSGC Trigger: ACATCCTGAGCAGACCGGTTGCCACCCCGAACAGCAGCCTCCTCTCTGGCTACCCCCACGTGGCAGGCTTTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS CCA 72 bp | GATAGTGTCACTCAGGGGGTCTGGAGTGTTGCTGCATaGCCGAGCGCTGCCTCTCCAGTCCTGGCCTGTGTC | + |
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Preference number: 6 (lower is better) Translates to: DSVTQGVWSVAA*PSAASPVLACV Trigger: GACACAGGCCAGGACTGGAGAGGCAGCGCTCGGCCATGCAGCAACACTCCAGACCCCCTGAGTGACACTATC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS CAA 90 bp | GCAAAGATCTGGTGGCCCGTGAAGGTAGGGCGGGTGTGCTTTTTCTaGTGGATAGTGTCACTCAGGGGGTCTGGAGTGTTGCTGCATGGC | + |
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Preference number: 6 (lower is better) Translates to: AKIWWPVKVGRVCFF*WIVSLRGSGVLLHG Trigger: GCCATGCAGCAACACTCCAGACCCCCTGAGTGACACTATCCACAAGAAAAAGCACACCCGCCCTACCTTCACGGGCCACCAGATCTTTGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS CCA 72 bp | GTGCTTTTTCTTGTGGATAGTGTCACTCAGGGGGTCTaGAGTGTTGCTGCATGGCCGAGCGCTGCCTCTCCA | + |
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Preference number: 6 (lower is better) Translates to: VLFLVDSVTQGV*SVAAWPSAASP Trigger: TGGAGAGGCAGCGCTCGGCCATGCAGCAACACTCCAGACCCCCTGAGTGACACTATCCACAAGAAAAAGCAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS CAA 72 bp | TGGTGGCCCGTGAAGGTAGGGCGGGTGTGCTTTTTCTaGTGGATAGTGTCACTCAGGGGGTCTGGAGTGTTG | + |
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Preference number: 6 (lower is better) Translates to: WWPVKVGRVCFF*WIVSLRGSGVL Trigger: CAACACTCCAGACCCCCTGAGTGACACTATCCACAAGAAAAAGCACACCCGCCCTACCTTCACGGGCCACCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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| CDS CCA 72 bp | GCTTGTAGAAAGAGTTCTGCACCGAGTACTGGCACATaGGAGCCTTCATTTCTGAGAACTGGGCCAGCTGTG | + |
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Preference number: 6 (lower is better) Translates to: ACRKSSAPSTGT*EPSFLRTGPAV Trigger: CACAGCTGGCCCAGTTCTCAGAAATGAAGGCTCCCATGTGCCAGTACTCGGTGCAGAACTCTTTCTACAAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071588.8 |
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