Pregenerated sensors for NKX6-1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035187Ensembl transcript IDs: ENSMUST00000044125.11
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAACAAACGACTGTGCAAATTCGGAGGAGAACCCAAAGGCTGCTGTaGGAAGCTCGCGGGTTCCGGGATCTCAGACTGCAAGTCCCGGGG | + |
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Preference number: 1 (lower is better) Translates to: QQTTVQIRRRTQRLL*EARGFRDLRLQVPG Trigger: CCCCGGGACTTGCAGTCTGAGATCCCGGAACCCGCGAGCTTCTCACAGCAGCCTTTGGGTTCTCCTCCGAATTTGCACAGTCGTTTGTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| 3UTR CCA 90 bp | TATTTACATAGAGCCTTCAACAGGTTACTTGGTCGGCAGAGCAGTTaGGGGGAGGGAGAGCGTCCCTTTCTCCCTAGGTGGCAGCTGCCC | + |
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Preference number: 1 (lower is better) Translates to: YLHRAFNRLLGRQSS*GEGERPFLPRWQLP Trigger: GGGCAGCTGCCACCTAGGGAGAAAGGGACGCTCTCCCTCCCCCCAACTGCTCTGCCGACCAAGTAACCTGTTGAAGGCTCTATGTAAATA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| 3UTR GCA 90 bp | AATAGCAACAAACGACTGTGCAAATTCGGAGGAGAACCCAAAGGCTaGTGTGAGAAGCTCGCGGGTTCCGGGATCTCAGACTGCAAGTCC | + |
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Preference number: 1 (lower is better) Translates to: NSNKRLCKFGGEPKG*CEKLAGSGISDCKS Trigger: GGACTTGCAGTCTGAGATCCCGGAACCCGCGAGCTTCTCACAGCAGCCTTTGGGTTCTCCTCCGAATTTGCACAGTCGTTTGTTGCTATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| 3UTR CCA 90 bp | ATTCTTATGATACAAAACACTTTGAACTCAATTACAGCAACTAAGTaGAACTTTTATGTTCTGATCCGGAGCGCTTGTAACAATTCCCAC | + |
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Preference number: 1 (lower is better) Translates to: ILMIQNTLNSITATK*NFYVLIRSACNNSH Trigger: GTGGGAATTGTTACAAGCGCTCCGGATCAGAACATAAAAGTTCCACTTAGTTGCTGTAATTGAGTTCAAAGTGTTTTGTATCATAAGAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| 3UTR-3UTR CCA 90 bp | GGCTCAGCAAGGTCTGAAAGCCGGGCAAGAATTGGTGAAGGGAAAAAGCGGTTCGGGTGGGAAGGGTCCTaGGGAGCCGCGGGGATGCGG | + |
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Preference number: 2 (lower is better) Translates to: GSARSESRARIGEGKKRFGWEGS*GAAGMR Trigger: CCGCATCCCCGCGGCTCCCCAGGACCCTTCCCACCC...GAACCGCTTTTTCCCTTCACCAATTCTTGCCCGGCTTTCAGACCTTGCTGAGCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| 3UTR-3UTR CCA 90 bp | CTGATCCGGAGCGCTTGTAACAATTCCCACCATCTACTTTTAACACGCATTTTTGGTCGGCAGAGCAGTTaGGGGGAGGGAGAGCGTCCC | + |
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Preference number: 2 (lower is better) Translates to: LIRSACNNSHHLLLTRIFGRQSS*GEGERP Trigger: GGGACGCTCTCCCTCCCCCCAACTGCTCTGCCGACC...AAAAATGCGTGTTAAAAGTAGATGGTGGGAATTGTTACAAGCGCTCCGGATCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| 3UTR-3UTR CCA 90 bp | AACAGAAAGTGCATTACATTTCATGGGTCTCGCAAAGGGGCTGCCTTTTCTTTAGGTCTGGGGCTGCCCTaGGGCTCAGCAAGGTCTGAA | + |
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Preference number: 2 (lower is better) Translates to: NRKCITFHGSRKGAAFSLGLGLP*GSARSE Trigger: TTCAGACCTTGCTGAGCCCCAGGGCAGCCCCAGACC...TAAAGAAAAGGCAGCCCCTTTGCGAGACCCATGAAATGTAATGCACTTTCTGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| 3UTR-3UTR TCA 90 bp | ATGGGTCTCGCAAAGGGGCTGCCTTTTCTTTACAAACCGAATTCCTCTTATAAAGAGCCGAAAGAGAAGTaGGTTGGGAGGTGTCTGAGG | + |
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Preference number: 2 (lower is better) Translates to: MGLAKGLPFLYKPNSSYKEPKEK*VGRCLR Trigger: CCTCAGACACCTCCCAACTCACTTCTCTTTCGGCTC...TTTATAAGAGGAATTCGGTTTGTAAAGAAAAGGCAGCCCCTTTGCGAGACCCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| 3UTR-3UTR TCA 90 bp | GAAAGTGCATTACATTTCATGGGTCTCGCAAAGGGGCTGCCTTTTCTTTACAAACCGGGCAAGAATTGGTaGAGGGAAAAAGCGGTTCGG | + |
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Preference number: 2 (lower is better) Translates to: ESALHFMGLAKGLPFLYKPGKNW*REKAVR Trigger: CCGAACCGCTTTTTCCCTTCACCAATTCTTGCCCGG...TTTGTAAAGAAAAGGCAGCCCCTTTGCGAGACCCATGAAATGTAATGCACTTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| 3UTR-3UTR GCA 90 bp | GAAAGTGCATTACATTTCATGGGTCTCGCAAAGGGGCTGCCTTTTCTTTACAAAAGCAACAAACGACTGTaGAAATTCGGAGGAGAACCC | + |
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Preference number: 2 (lower is better) Translates to: ESALHFMGLAKGLPFLYKSNKRL*KFGGEP Trigger: GGGTTCTCCTCCGAATTTGCACAGTCGTTTGTTGCT...TTTGTAAAGAAAAGGCAGCCCCTTTGCGAGACCCATGAAATGTAATGCACTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| 3UTR TCA 72 bp | CGCAGAGCAAGGAACGGAGCGTGGATGGGGGACGCCTaGCGTCGCGGGTGGGAAGGGTCCTGGGGAGCCGCG | + |
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Preference number: 3 (lower is better) Translates to: RRARNGAWMGDA*RRGWEGSWGAA Trigger: CGCGGCTCCCCAGGACCCTTCCCACCCGCGACGTCAGGCGTCCCCCATCCACGCTCCGTTCCTTGCTCTGCG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| 3UTR GCA 72 bp | GGGAGGGAGAGCGTCCCTTTCTCCCTAGGTGGCAGCTaGCCTCCTCGGCTCCGAGATTCTCACCAGGCGGTG | + |
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Preference number: 3 (lower is better) Translates to: GRESVPFSLGGS*PPRLRDSHQAV Trigger: CACCGCCTGGTGAGAATCTCGGAGCCGAGGAGGGCAGCTGCCACCTAGGGAGAAAGGGACGCTCTCCCTCCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| 3UTR CCA 72 bp | AGAGCCTTCAACAGGTTACTTGGTCGGCAGAGCAGTTaGGGGGAGGGAGAGCGTCCCTTTCTCCCTAGGTGG | + |
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Preference number: 3 (lower is better) Translates to: RAFNRLLGRQSS*GEGERPFLPRW Trigger: CCACCTAGGGAGAAAGGGACGCTCTCCCTCCCCCCAACTGCTCTGCCGACCAAGTAACCTGTTGAAGGCTCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| 3UTR GCA 72 bp | AAACGACTGTGCAAATTCGGAGGAGAACCCAAAGGCTaGTGTGAGAAGCTCGCGGGTTCCGGGATCTCAGAC | + |
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Preference number: 3 (lower is better) Translates to: KRLCKFGGEPKG*CEKLAGSGISD Trigger: GTCTGAGATCCCGGAACCCGCGAGCTTCTCACAGCAGCCTTTGGGTTCTCCTCCGAATTTGCACAGTCGTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| 3UTR TCA 72 bp | AAAGCGGTTCGGAAAGACCCAGAGCCGAAAGAGAAGTaGGTTGGGAGGTGTCTGAGGAGAGCTATGACATTG | + |
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Preference number: 3 (lower is better) Translates to: KAVRKDPEPKEK*VGRCLRRAMTL Trigger: CAATGTCATAGCTCTCCTCAGACACCTCCCAACTCACTTCTCTTTCGGCTCTGGGTCTTTCCGAACCGCTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| 3UTR TCA 72 bp | ACTCAATTACAGCAACTAAGTGGAACTTTTATGTTCTaGTCCGGAGCGCTTGTAACAATTCCCACCATCTAC | + |
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Preference number: 3 (lower is better) Translates to: TQLQQLSGTFMF*SGALVTIPTIY Trigger: GTAGATGGTGGGAATTGTTACAAGCGCTCCGGATCAGAACATAAAAGTTCCACTTAGTTGCTGTAATTGAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| 3UTR GCA 72 bp | AAAGTGCATTACATTTCATGGGTCTCGCAAAGGGGCTaGCTTTTCTTTACAAACCGAATTCCTCTTATAAAT | + |
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Preference number: 3 (lower is better) Translates to: KVHYISWVSQRG*LFFTNRIPLIN Trigger: ATTTATAAGAGGAATTCGGTTTGTAAAGAAAAGGCAGCCCCTTTGCGAGACCCATGAAATGTAATGCACTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| CDS-3UTR TCA 90 bp | GAGCAGCCAGGATACTGGGGGCCGGGGGAACCGGCTGTGGGACGCGGTCGCGATGAGGGCTCAGGCTGCTaGAGCGGGGCAGGCCGGCCA | + |
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Preference number: 4 (lower is better) Translates to: EQPGYWGPGEPAVGRGRDEGSGC*SGAGRP Trigger: TGGCCGGCCTGCCCCGCTTCAGCAGCCTGAGCCCTC...ATCGCGACCGCGTCCCACAGCCGGTTCCCCCGGCCCCCAGTATCCTGGCTGCTC 73% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| CDS-3UTR GCA 90 bp | GAGCAGCCAGGATACTGGGGGCCGGGGGAACCGGCTGTGGGACGCGGTCGCGATATCTCGGCCATACTGTaGAGGGCGGCCAGGGGCGGG | + |
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Preference number: 4 (lower is better) Translates to: EQPGYWGPGEPAVGRGRDISAIL*RAARGG Trigger: CCCGCCCCTGGCCGCCCTGCACAGTATGGCCGAGAT...ATCGCGACCGCGTCCCACAGCCGGTTCCCCCGGCCCCCAGTATCCTGGCTGCTC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| CDS-3UTR GCA 90 bp | AGTAAAGGCCCGGCGAGCAGCCAGGATACTGGGGGCCGGGGGAACCGGCTGTGGCTCCACGGCGGACTCTaGATCACTCCGGGCCAGAAG | + |
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Preference number: 4 (lower is better) Translates to: SKGPASSQDTGGRGNRLWLHGGL*ITPGQK Trigger: CTTCTGGCCCGGAGTGATGCAGAGTCCGCCGTGGAG...CCACAGCCGGTTCCCCCGGCCCCCAGTATCCTGGCTGCTCGCCGGGCCTTTACT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| CDS-3UTR TCA 90 bp | AGCGTCCCTTTCTCCCTAGGTGGCAGCTGCCCTCCTCGGCTCCGAGATTCTCACGGCTCAGGATGTCGTTaGTGCCGTGTGGGGTGGCCG | + |
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Preference number: 4 (lower is better) Translates to: SVPFSLGGSCPPRLRDSHGSGCR*CRVGWP Trigger: CGGCCACCCCACACGGCATCAACGACATCCTGAGCC...GTGAGAATCTCGGAGCCGAGGAGGGCAGCTGCCACCTAGGGAGAAAGGGACGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| CDS-3UTR TCA 90 bp | CCTTTCTCCCTAGGTGGCAGCTGCCCTCCTCGGCTCCGAGATTCTCACCAGGCGTCTGGAACCAGACCTTaGCCTGACTCTCCGTCATCC | + |
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Preference number: 4 (lower is better) Translates to: PFSLGGSCPPRLRDSHQASGTRP*PDSPSS Trigger: GGATGACGGAGAGTCAGGTCAAGGTCTGGTTCCAGA...CGCCTGGTGAGAATCTCGGAGCCGAGGAGGGCAGCTGCCACCTAGGGAGAAAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| CDS-3UTR TCA 90 bp | GAGCAGCCAGGATACTGGGGGCCGGGGGAACCGGCTGTGGGACGCGGTCGCGATTTTTCAGCAGCTGAGTaGTTTTCTCGTCGTCAGAGT | + |
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Preference number: 4 (lower is better) Translates to: EQPGYWGPGEPAVGRGRDFSAAE*FSRRQS Trigger: ACTCTGACGACGAGAAAATCACTCAGCTGCTGAAAA...ATCGCGACCGCGTCCCACAGCCGGTTCCCCCGGCCCCCAGTATCCTGGCTGCTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| CDS-3UTR CCA 90 bp | AGTAAAGGCCCGGCGAGCAGCCAGGATACTGGGGGCCGGGGGAACCGGCTGTGGCAGAGAACGTGGGTCTaGTGTGTTTTCTCTTCCCAT | + |
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Preference number: 4 (lower is better) Translates to: SKGPASSQDTGGRGNRLWQRTWV*CVFSSH Trigger: ATGGGAAGAGAAAACACACCAGACCCACGTTCTCTG...CCACAGCCGGTTCCCCCGGCCCCCAGTATCCTGGCTGCTCGCCGGGCCTTTACT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| CDS-3UTR CCA 90 bp | AGCGTCCCTTTCTCCCTAGGTGGCAGCTGCCCTCCTCGGCTCCGAGATTCTCACGCTGTCCAGAGAACGTaGGTCTGGTGTGTTTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: SVPFSLGGSCPPRLRDSHAVQRT*VWCVFS Trigger: AGAGAAAACACACCAGACCCACGTTCTCTGGACAGC...GTGAGAATCTCGGAGCCGAGGAGGGCAGCTGCCACCTAGGGAGAAAGGGACGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| CDS-3UTR GCA 90 bp | AACAGAAAGTGCATTACATTTCATGGGTCTCGCAAAGGGGCTGCCTTTTCTTTAGCTGCTGCGGGGGACTaGCCAGGGACGAGAGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: NRKCITFHGSRKGAAFSLAAAGD*PGTRGP Trigger: GGGGCCTCTCGTCCCTGGGCAGTCCCCCGCAGCAGC...TAAAGAAAAGGCAGCCCCTTTGCGAGACCCATGAAATGTAATGCACTTTCTGTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| CDS-3UTR GCA 90 bp | CTGATCCGGAGCGCTTGTAACAATTCCCACCATCTACTTTTAACACGCATTTTTAGCAGGAACGCGCTCTaGCGAGGGCCCTCCATCGCC | + |
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Preference number: 4 (lower is better) Translates to: LIRSACNNSHHLLLTRIFSRNAL*RGPSIA Trigger: GGCGATGGAGGGCCCTCGGCAGAGCGCGTTCCTGCT...AAAAATGCGTGTTAAAAGTAGATGGTGGGAATTGTTACAAGCGCTCCGGATCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| CDS-3UTR CCA 90 bp | AACAGAAAGTGCATTACATTTCATGGGTCTCGCAAAGGGGCTGCCTTTTCTTTAGTCGTTGATGCCGTGTaGGGTGGCCGCCGAAAGCTG | + |
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Preference number: 4 (lower is better) Translates to: NRKCITFHGSRKGAAFSLVVDAV*GGRRKL Trigger: CAGCTTTCGGCGGCCACCCCACACGGCATCAACGAC...TAAAGAAAAGGCAGCCCCTTTGCGAGACCCATGAAATGTAATGCACTTTCTGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| CDS-3UTR GCA 90 bp | CTGATCCGGAGCGCTTGTAACAATTCCCACCATCTACTTTTAACACGCATTTTTGCCATCTCGGCTGCGTaGTTCTTTCTCCACTTGGTC | + |
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Preference number: 4 (lower is better) Translates to: LIRSACNNSHHLLLTRIFAISAA*FFLHLV Trigger: GACCAAGTGGAGAAAGAAGCACGCAGCCGAGATGGC...AAAAATGCGTGTTAAAAGTAGATGGTGGGAATTGTTACAAGCGCTCCGGATCAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| CDS-3UTR GCA 90 bp | CTGATCCGGAGCGCTTGTAACAATTCCCACCATCTACTTTTAACACGCATTTTTCGTGGCCATCTCGGCTaGGTGCTTCTTTCTCCACTT | + |
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Preference number: 4 (lower is better) Translates to: LIRSACNNSHHLLLTRIFRGHLG*VLLSPL Trigger: AAGTGGAGAAAGAAGCACGCAGCCGAGATGGCCACG...AAAAATGCGTGTTAAAAGTAGATGGTGGGAATTGTTACAAGCGCTCCGGATCAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| CDS-3UTR GCA 90 bp | ATGGGTCTCGCAAAGGGGCTGCCTTTTCTTTACAAACCGAATTCCTCTTATAAATCCAGGGCGAAGATTTaGTGTCCAGAGAACGTGGGT | + |
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Preference number: 4 (lower is better) Translates to: MGLAKGLPFLYKPNSSYKSRAKI*CPENVG Trigger: ACCCACGTTCTCTGGACAGCAAATCTTCGCCCTGGA...TTTATAAGAGGAATTCGGTTTGTAAAGAAAAGGCAGCCCCTTTGCGAGACCCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| CDS-3UTR GCA 90 bp | AACAGAAAGTGCATTACATTTCATGGGTCTCGCAAAGGGGCTGCCTTTTCTTTAAGAATAGGCCAAGCGTaGTCTCTCTGGTCCTGCCAA | + |
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Preference number: 4 (lower is better) Translates to: NRKCITFHGSRKGAAFSLRIGQA*SLWSCQ Trigger: TTGGCAGGACCAGAGAGAGCACGCTTGGCCTATTCT...TAAAGAAAAGGCAGCCCCTTTGCGAGACCCATGAAATGTAATGCACTTTCTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| CDS-3UTR CAA 90 bp | AACAGAAAGTGCATTACATTTCATGGGTCTCGCAAAGGGGCTGCCTTTTCTTTAAGCTCGGCCAGGGGCTaGGGGTACCGGCCCACGGCG | + |
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Preference number: 5 (lower is better) Translates to: NRKCITFHGSRKGAAFSLSSARG*GYRPTA Trigger: CGCCGTGGGCCGGTACCCCAAGCCCCTGGCCGAGCT...TAAAGAAAAGGCAGCCCCTTTGCGAGACCCATGAAATGTAATGCACTTTCTGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| CDS-3UTR CAA 90 bp | GGCTCAGCAAGGTCTGAAAGCCGGGCAAGAATTGGTGAAGGGAAAAAGCGGTTCTGCCAAGTACTTCGTTaGTTCGAAAGTCTTCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: GSARSESRARIGEGKKRFCQVLR*FESLLQ Trigger: CTGGAGAAGACTTTCGAACAAACGAAGTACTTGGCA...GAACCGCTTTTTCCCTTCACCAATTCTTGCCCGGCTTTCAGACCTTGCTGAGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| CDS-3UTR CAA 90 bp | ATGGGTCTCGCAAAGGGGCTGCCTTTTCTTTACAAACCGAATTCCTCTTATAAACTCCAGGGCGAAGATTaGCTGTCCAGAGAACGTGGG | + |
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Preference number: 5 (lower is better) Translates to: MGLAKGLPFLYKPNSSYKLQGED*LSRERG Trigger: CCCACGTTCTCTGGACAGCAAATCTTCGCCCTGGAG...TTTATAAGAGGAATTCGGTTTGTAAAGAAAAGGCAGCCCCTTTGCGAGACCCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| CDS CCA 72 bp | CGCGGCGCTGGGGCTAAAGTAGAGCCCGGGCGGCGGTaGCGGAGGGCTCAGGCTGCTGAAGCGGGGCAGGCC | + |
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Preference number: 6 (lower is better) Translates to: RGAGAKVEPGRR*RRAQAAEAGQA Trigger: GGCCTGCCCCGCTTCAGCAGCCTGAGCCCTCCGCCACCGCCGCCCGGGCTCTACTTTAGCCCCAGCGCCGCG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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| CDS GCA 72 bp | CCCCAGAGAATAGGCCAAGCGTGCTCTCTCTGGTCCTaGCAAGTACTTCGTTTGTTCGAAAGTCTTCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: PQRIGQACSLWS*QVLRLFESLLQ Trigger: CTGGAGAAGACTTTCGAACAAACGAAGTACTTGGCAGGACCAGAGAGAGCACGCTTGGCCTATTCTCTGGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044125.11 |
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