RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NKX3-2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000049691

Ensembl transcript IDs: ENSMUST00000060820.8

Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp GTCAAGTCCCAGCAGGATTTCATTCCCCACCTGCCTCATCCCCAGTaGAGCAGAACTCGCCTGCACAGAGTACACCTGTCCGTGGCGGTG +
Preference number: 2 (lower is better)
Translates to: VKSQQDFIPHLPHPQ*SRTRLHRVHLSVAV
Trigger: CACCGCCACGGACAGGTGTACTCTGTGCAGGCGAGTTCTGCTCAACTGGGGATGAGGCAGGTGGGGAATGAAATCCTGCTGGGACTTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
3UTR TCA 72 bp AGCAGGATTTCATTCCCCACCTGCCTCATCCCCAGTTaGGCAGAACTCGCCTGCACAGAGTACACCTGTCCG +
Preference number: 3 (lower is better)
Translates to: SRISFPTCLIPS*AELACTEYTCP
Trigger: CGGACAGGTGTACTCTGTGCAGGCGAGTTCTGCTCAACTGGGGATGAGGCAGGTGGGGAATGAAATCCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS-3UTR GCA 90 bp CCAGTTGAGCAGAACTCGCCTGCACAGAGTACACCTGTCCGTGGCGGTGCATACTCACCGCCACCTCTGTaGCCCCTGGTGCCGGGCGCC +
Preference number: 4 (lower is better)
Translates to: PVEQNSPAQSTPVRGGAYSPPPL*PLVPGA
Trigger: GGCGCCCGGCACCAGGGGGCACAGAGGTGGCGGTGA...GTATGCACCGCCACGGACAGGTGTACTCTGTGCAGGCGAGTTCTGCTCAACTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS-3UTR GCA 90 bp CACCTGCCTCATCCCCAGTTGAGCAGAACTCGCCTGCACAGAGTACACCTGTCCCGAAGCTGCCAGGTCTaGGCGCTCCGGCCCGGACAG +
Preference number: 4 (lower is better)
Translates to: HLPHPQLSRTRLHRVHLSRSCQV*ALRPGQ
Trigger: CTGTCCGGGCCGGAGCGCGCAGACCTGGCAGCTTCG...GGACAGGTGTACTCTGTGCAGGCGAGTTCTGCTCAACTGGGGATGAGGCAGGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS-3UTR GCA 90 bp CAGTTGAGCAGAACTCGCCTGCACAGAGTACACCTGTCCGTGGCGGTGCATACGAGAAGGGCGTCAAGGTaGCGCTGCCGCGCACAGCCA +
Preference number: 4 (lower is better)
Translates to: QLSRTRLHRVHLSVAVHTRRASR*RCRAQP
Trigger: TGGCTGTGCGCGGCAGCGGCACCTTGACGCCCTTCT...CGTATGCACCGCCACGGACAGGTGTACTCTGTGCAGGCGAGTTCTGCTCAACTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS-3UTR GCA 90 bp TCCCCACCTGCCTCATCCCCAGTTGAGCAGAACTCGCCTGCACAGAGTACACCTACATCTCGCTGTCGCTaGGGACCGGGGCTTCCTCCT +
Preference number: 4 (lower is better)
Translates to: SPPASSPVEQNSPAQSTPTSRCR*GPGLPP
Trigger: AGGAGGAAGCCCCGGTCCGCAGCGACAGCGAGATGT...AGGTGTACTCTGTGCAGGCGAGTTCTGCTCAACTGGGGATGAGGCAGGTGGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS-3UTR GCA 90 bp CAGTTGAGCAGAACTCGCCTGCACAGAGTACACCTGTCCGTGGCGGTGCATACGTCGCGGTTTAGGGGCTaGGGGCTCTTCCTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: QLSRTRLHRVHLSVAVHTSRFRG*GLFLLL
Trigger: GAGGAGGAGGAAGAGCCCGCAGCCCCTAAACCGCGA...CGTATGCACCGCCACGGACAGGTGTACTCTGTGCAGGCGAGTTCTGCTCAACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS-3UTR CCA 90 bp TTCATTCCCCACCTGCCTCATCCCCAGTTGAGCAGAACTCGCCTGCACAGAGTAAGCTCGCAGCCTGGCTaGTCCAGGCCCAGGGTCACC +
Preference number: 4 (lower is better)
Translates to: FIPHLPHPQLSRTRLHRVSSQPG*SRPRVT
Trigger: GGTGACCCTGGGCCTGGACCAGCCAGGCTGCGAGCT...TACTCTGTGCAGGCGAGTTCTGCTCAACTGGGGATGAGGCAGGTGGGGAATGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS-3UTR CCA 90 bp CCCCACCTGCCTCATCCCCAGTTGAGCAGAACTCGCCTGCACAGAGTACACCTGGGTCGCCTGAAACGCTaGCTGACATCTCGCTGTCGC +
Preference number: 4 (lower is better)
Translates to: PHLPHPQLSRTRLHRVHLGRLKR*LTSRCR
Trigger: GCGACAGCGAGATGTCAGCCAGCGTTTCAGGCGACC...CAGGTGTACTCTGTGCAGGCGAGTTCTGCTCAACTGGGGATGAGGCAGGTGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS-3UTR GCA 90 bp TCCCCACCTGCCTCATCCCCAGTTGAGCAGAACTCGCCTGCACAGAGTACACCTGGACTCTCTGCGCTCTaGCCCACGGCTGTTCTGGTT +
Preference number: 4 (lower is better)
Translates to: SPPASSPVEQNSPAQSTPGLSAL*PTAVLV
Trigger: AACCAGAACAGCCGTGGGGCAGAGCGCAGAGAGTCC...AGGTGTACTCTGTGCAGGCGAGTTCTGCTCAACTGGGGATGAGGCAGGTGGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS-3UTR GCA 90 bp AGGTGTGTCAAGTCCCAGCAGGATTTCATTCCCCACCTGCCTCATCCCCAGTTGTTTCTTGGCGGCGGGTaGAGAGGCGAGCAGGTCGGC +
Preference number: 4 (lower is better)
Translates to: RCVKSQQDFIPHLPHPQLFLGGG*RGEQVG
Trigger: GCCGACCTGCTCGCCTCTGCACCCGCCGCCAAGAAA...CAACTGGGGATGAGGCAGGTGGGGAATGAAATCCTGCTGGGACTTGACACACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS-3UTR GCA 90 bp ATAGGTGTGTCAAGTCCCAGCAGGATTTCATTCCCCACCTGCCTCATCCCCAGTGAGCTTCAGCGAAGCTaGCAGGTCTGCGCGCTCCGG +
Preference number: 4 (lower is better)
Translates to: IGVSSPSRISFPTCLIPSELQRS*QVCALR
Trigger: CCGGAGCGCGCAGACCTGGCAGCTTCGCTGAAGCTC...ACTGGGGATGAGGCAGGTGGGGAATGAAATCCTGCTGGGACTTGACACACCTAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS-3UTR CCA 90 bp TCCCCAGTTGAGCAGAACTCGCCTGCACAGAGTACACCTGTCCGTGGCGGTGCACCATCTGCCGGCGTTTaGTCTTGTAGCGACGGTTCT +
Preference number: 4 (lower is better)
Translates to: SPVEQNSPAQSTPVRGGAPSAGV*SCSDGS
Trigger: AGAACCGTCGCTACAAGACCAAACGCCGGCAGATGG...TGCACCGCCACGGACAGGTGTACTCTGTGCAGGCGAGTTCTGCTCAACTGGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS-3UTR TCA 90 bp TCCCCAGTTGAGCAGAACTCGCCTGCACAGAGTACACCTGTCCGTGGCGGTGCAGCTCCTCTTTCTTGTTaGGGATCGCCTGGATGGAGA +
Preference number: 4 (lower is better)
Translates to: SPVEQNSPAQSTPVRGGAAPLSC*GSPGWR
Trigger: TCTCCATCCAGGCGATCCTCAACAAGAAAGAGGAGC...TGCACCGCCACGGACAGGTGTACTCTGTGCAGGCGAGTTCTGCTCAACTGGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS-3UTR TCA 90 bp CCTGCCTCATCCCCAGTTGAGCAGAACTCGCCTGCACAGAGTACACCTGTCCGTTCACTTGCGTCTCTGTaGGCTTCAGCGAAGCTGCCA +
Preference number: 4 (lower is better)
Translates to: PASSPVEQNSPAQSTPVRSLASL*ASAKLP
Trigger: TGGCAGCTTCGCTGAAGCTCACAGAGACGCAAGTGA...ACGGACAGGTGTACTCTGTGCAGGCGAGTTCTGCTCAACTGGGGATGAGGCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS-3UTR CCA 90 bp CACCTGCCTCATCCCCAGTTGAGCAGAACTCGCCTGCACAGAGTACACCTGTCCGGCAAATACTGTCTTTaGTCGTCACGCACCAGCACC +
Preference number: 4 (lower is better)
Translates to: HLPHPQLSRTRLHRVHLSGKYCL*SSRTST
Trigger: GGTGCTGGTGCGTGACGACCAAAGACAGTATTTGCC...GGACAGGTGTACTCTGTGCAGGCGAGTTCTGCTCAACTGGGGATGAGGCAGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS GCA 90 bp CTGTCGCTGCGGACCGGGGCTTCCTCCTCCAGGTCCTTGGCGGCGTaGAGCTCGCAGCCTGGCTGGTCCAGGCCCAGGGTCACCCTGGCG +
Preference number: 5 (lower is better)
Translates to: LSLRTGASSSRSLAA*SSQPGWSRPRVTLA
Trigger: CGCCAGGGTGACCCTGGGCCTGGACCAGCCAGGCTGCGAGCTGCACGCCGCCAAGGACCTGGAGGAGGAAGCCCCGGTCCGCAGCGACAG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS CCA 90 bp CTGGCTGGTCCAGGCCCAGGGTCACCCTGGCGCGGCCGGTTCCACTaGCTCCCGGGACATCGGCGCAGCGCCTCCTGCCCTCGTTCTCTT +
Preference number: 5 (lower is better)
Translates to: LAGPGPGSPWRGRFH*LPGHRRSASCPRSL
Trigger: AAGAGAACGAGGGCAGGAGGCGCTGCGCCGATGTCCCGGGAGCCAGTGGAACCGGCCGCGCCAGGGTGACCCTGGGCCTGGACCAGCCAG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS CCA 90 bp GCTTCCTCCTCCAGGTCCTTGGCGGCGTGCAGCTCGCAGCCTGGCTaGTCCAGGCCCAGGGTCACCCTGGCGCGGCCGGTTCCACTGGCT +
Preference number: 5 (lower is better)
Translates to: ASSSRSLAACSSQPG*SRPRVTLARPVPLA
Trigger: AGCCAGTGGAACCGGCCGCGCCAGGGTGACCCTGGGCCTGGACCAGCCAGGCTGCGAGCTGCACGCCGCCAAGGACCTGGAGGAGGAAGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS CCA 90 bp ACATCTCGCTGTCGCTGCGGACCGGGGCTTCCTCCTCCAGGTCCTTaGCGGCGTGCAGCTCGCAGCCTGGCTGGTCCAGGCCCAGGGTCA +
Preference number: 5 (lower is better)
Translates to: TSRCRCGPGLPPPGP*RRAARSLAGPGPGS
Trigger: TGACCCTGGGCCTGGACCAGCCAGGCTGCGAGCTGCACGCCGCCAAGGACCTGGAGGAGGAAGCCCCGGTCCGCAGCGACAGCGAGATGT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS GCA 90 bp TCGGGCTGTGGTCGCCTGAAACGCTGGCTGACATCTCGCTGTCGCTaGGGACCGGGGCTTCCTCCTCCAGGTCCTTGGCGGCGTGCAGCT +
Preference number: 5 (lower is better)
Translates to: SGCGRLKRWLTSRCR*GPGLPPPGPWRRAA
Trigger: AGCTGCACGCCGCCAAGGACCTGGAGGAGGAAGCCCCGGTCCGCAGCGACAGCGAGATGTCAGCCAGCGTTTCAGGCGACCACAGCCCGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS GCA 90 bp GTCGTCACGCACCAGCACCTTTACGGCCACTTTCTTGGCGGCGGGTaGAGAGGCGAGCAGGTCGGCGGCCATCTGCCGGCGTTTGGTCTT +
Preference number: 5 (lower is better)
Translates to: VVTHQHLYGHFLGGG*RGEQVGGHLPAFGL
Trigger: AAGACCAAACGCCGGCAGATGGCCGCCGACCTGCTCGCCTCTGCACCCGCCGCCAAGAAAGTGGCCGTAAAGGTGCTGGTGCGTGACGAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS CCA 90 bp CGTGCACCTCCAGGGCTAACGCTGTCATCCTCGCCTCTCGGGCTGTaGTCGCCTGAAACGCTGGCTGACATCTCGCTGTCGCTGCGGACC +
Preference number: 5 (lower is better)
Translates to: RAPPGLTLSSSPLGL*SPETLADISLSLRT
Trigger: GGTCCGCAGCGACAGCGAGATGTCAGCCAGCGTTTCAGGCGACCACAGCCCGAGAGGCGAGGATGACAGCGTTAGCCCTGGAGGTGCACG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS CCA 90 bp ACTGTCTTTGGTCGTCACGCACCAGCACCTTTACGGCCACTTTCTTaGCGGCGGGTGCAGAGGCGAGCAGGTCGGCGGCCATCTGCCGGC +
Preference number: 5 (lower is better)
Translates to: TVFGRHAPAPLRPLS*RRVQRRAGRRPSAG
Trigger: GCCGGCAGATGGCCGCCGACCTGCTCGCCTCTGCACCCGCCGCCAAGAAAGTGGCCGTAAAGGTGCTGGTGCGTGACGACCAAAGACAGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS GCA 90 bp CTCAGGGCTGAGTCTGAGTCCCAACCTCCCGGACTCTCTGCGCTCTaGCCCACGGCTGTTCTGGTTCGGGCGGGAGATGCCAGAAGAGAG +
Preference number: 5 (lower is better)
Translates to: LRAESESQPPGLSAL*PTAVLVRAGDARRE
Trigger: CTCTCTTCTGGCATCTCCCGCCCGAACCAGAACAGCCGTGGGGCAGAGCGCAGAGAGTCCGGGAGGTTGGGACTCAGACTCAGCCCTGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS-3UTR CAA 90 bp TCCCCACCTGCCTCATCCCCAGTTGAGCAGAACTCGCCTGCACAGAGTACACCTTTTACGGCCACTTTCTaGGCGGCGGGTGCAGAGGCG +
Preference number: 5 (lower is better)
Translates to: SPPASSPVEQNSPAQSTPFTATF*AAGAEA
Trigger: CGCCTCTGCACCCGCCGCCAAGAAAGTGGCCGTAAA...AGGTGTACTCTGTGCAGGCGAGTTCTGCTCAACTGGGGATGAGGCAGGTGGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS CCA 90 bp CCAGCCCGGGAGACAGTAGTAAGGGTAGTAGTAGGAGGGCTGCAGTaGCAGAAGGGAAGGTGGCCTCAGCACCTCTCCGGGCAAATACTG +
Preference number: 5 (lower is better)
Translates to: PARETVVRVVVGGLQ*QKGRWPQHLSGQIL
Trigger: CAGTATTTGCCCGGAGAGGTGCTGAGGCCACCTTCCCTTCTGCCACTGCAGCCCTCCTACTACTACCCTTACTACTGTCTCCCGGGCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS CCA 90 bp AGAAGGGAAGGTGGCCTCAGCACCTCTCCGGGCAAATACTGTCTTTaGTCGTCACGCACCAGCACCTTTACGGCCACTTTCTTGGCGGCG +
Preference number: 5 (lower is better)
Translates to: RREGGLSTSPGKYCL*SSRTSTFTATFLAA
Trigger: CGCCGCCAAGAAAGTGGCCGTAAAGGTGCTGGTGCGTGACGACCAAAGACAGTATTTGCCCGGAGAGGTGCTGAGGCCACCTTCCCTTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS-3UTR CAA 90 bp TCCCCAGTTGAGCAGAACTCGCCTGCACAGAGTACACCTGTCCGTGGCGGTGCACGCTCCTCTTTCTTGTaGAGGATCGCCTGGATGGAG +
Preference number: 5 (lower is better)
Translates to: SPVEQNSPAQSTPVRGGARSSFL*RIAWME
Trigger: CTCCATCCAGGCGATCCTCAACAAGAAAGAGGAGCG...TGCACCGCCACGGACAGGTGTACTCTGTGCAGGCGAGTTCTGCTCAACTGGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS CCA 90 bp GTAGTAAGGGTAGTAGTAGGAGGGCTGCAGTGGCAGAAGGGAAGGTaGCCTCAGCACCTCTCCGGGCAAATACTGTCTTTGGTCGTCACG +
Preference number: 5 (lower is better)
Translates to: VVRVVVGGLQWQKGR*PQHLSGQILSLVVT
Trigger: CGTGACGACCAAAGACAGTATTTGCCCGGAGAGGTGCTGAGGCCACCTTCCCTTCTGCCACTGCAGCCCTCCTACTACTACCCTTACTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS-3UTR CAA 90 bp TTCATTCCCCACCTGCCTCATCCCCAGTTGAGCAGAACTCGCCTGCACAGAGTACCGCGCTCCTCTTTCTaGTTGAGGATCGCCTGGATG +
Preference number: 5 (lower is better)
Translates to: FIPHLPHPQLSRTRLHRVPRSSF*LRIAWM
Trigger: CATCCAGGCGATCCTCAACAAGAAAGAGGAGCGCGG...TACTCTGTGCAGGCGAGTTCTGCTCAACTGGGGATGAGGCAGGTGGGGAATGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS-3UTR CAA 90 bp TGGATAGGTGTGTCAAGTCCCAGCAGGATTTCATTCCCCACCTGCCTCATCCCCGGGCAAATACTGTCTTaGGTCGTCACGCACCAGCAC +
Preference number: 5 (lower is better)
Translates to: WIGVSSPSRISFPTCLIPGQILS*VVTHQH
Trigger: GTGCTGGTGCGTGACGACCAAAGACAGTATTTGCCC...GGGGATGAGGCAGGTGGGGAATGAAATCCTGCTGGGACTTGACACACCTATCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS CCA 72 bp CTCCTCCAGGTCCTTGGCGGCGTGCAGCTCGCAGCCTaGCTGGTCCAGGCCCAGGGTCACCCTGGCGCGGCC +
Preference number: 6 (lower is better)
Translates to: LLQVLGGVQLAA*LVQAQGHPGAA
Trigger: GGCCGCGCCAGGGTGACCCTGGGCCTGGACCAGCCAGGCTGCGAGCTGCACGCCGCCAAGGACCTGGAGGAG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS GCA 72 bp CGGACCGGGGCTTCCTCCTCCAGGTCCTTGGCGGCGTaGAGCTCGCAGCCTGGCTGGTCCAGGCCCAGGGTC +
Preference number: 6 (lower is better)
Translates to: RTGASSSRSLAA*SSQPGWSRPRV
Trigger: GACCCTGGGCCTGGACCAGCCAGGCTGCGAGCTGCACGCCGCCAAGGACCTGGAGGAGGAAGCCCCGGTCCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS GCA 72 bp CCCGCTGCCCGCGGCGCCGCGCAACCCAGGCACGCGTaGACCTCCAGGGCTAACGCTGTCATCCTCGCCTCT +
Preference number: 6 (lower is better)
Translates to: PAARGAAQPRHA*TSRANAVILAS
Trigger: AGAGGCGAGGATGACAGCGTTAGCCCTGGAGGTGCACGCGTGCCTGGGTTGCGCGGCGCCGCGGGCAGCGGG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS CCA 72 bp TCCAGGTCCTTGGCGGCGTGCAGCTCGCAGCCTGGCTaGTCCAGGCCCAGGGTCACCCTGGCGCGGCCGGTT +
Preference number: 6 (lower is better)
Translates to: SRSLAACSSQPG*SRPRVTLARPV
Trigger: AACCGGCCGCGCCAGGGTGACCCTGGGCCTGGACCAGCCAGGCTGCGAGCTGCACGCCGCCAAGGACCTGGA
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS CAA 90 bp GGGCGCCCCTCCGGCGTAGCCAACCCGCCGCGCTCCTCTTTCTTGTaGAGGATCGCCTGGATGGAGAAGGGCGTCAAGGTGCCGCTGCCG +
Preference number: 6 (lower is better)
Translates to: GRPSGVANPPRSSFL*RIAWMEKGVKVPLP
Trigger: CGGCAGCGGCACCTTGACGCCCTTCTCCATCCAGGCGATCCTCAACAAGAAAGAGGAGCGCGGCGGGTTGGCTACGCCGGAGGGGCGCCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS GCA 72 bp CACCAGCACCTTTACGGCCACTTTCTTGGCGGCGGGTaGAGAGGCGAGCAGGTCGGCGGCCATCTGCCGGCG +
Preference number: 6 (lower is better)
Translates to: HQHLYGHFLGGG*RGEQVGGHLPA
Trigger: CGCCGGCAGATGGCCGCCGACCTGCTCGCCTCTGCACCCGCCGCCAAGAAAGTGGCCGTAAAGGTGCTGGTG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS GCA 72 bp GGTCGCCTGAAACGCTGGCTGACATCTCGCTGTCGCTaGGGACCGGGGCTTCCTCCTCCAGGTCCTTGGCGG +
Preference number: 6 (lower is better)
Translates to: GRLKRWLTSRCR*GPGLPPPGPWR
Trigger: CCGCCAAGGACCTGGAGGAGGAAGCCCCGGTCCGCAGCGACAGCGAGATGTCAGCCAGCGTTTCAGGCGACC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS CCA 72 bp GGTCGTCACGCACCAGCACCTTTACGGCCACTTTCTTaGCGGCGGGTGCAGAGGCGAGCAGGTCGGCGGCCA +
Preference number: 6 (lower is better)
Translates to: GRHAPAPLRPLS*RRVQRRAGRRP
Trigger: TGGCCGCCGACCTGCTCGCCTCTGCACCCGCCGCCAAGAAAGTGGCCGTAAAGGTGCTGGTGCGTGACGACC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS CCA 72 bp CTCCCGGACTCTCTGCGCTCTGCCCCACGGCTGTTCTaGTTCGGGCGGGAGATGCCAGAAGAGAGTCCTCGG +
Preference number: 6 (lower is better)
Translates to: LPDSLRSAPRLF*FGREMPEESPR
Trigger: CCGAGGACTCTCTTCTGGCATCTCCCGCCCGAACCAGAACAGCCGTGGGGCAGAGCGCAGAGAGTCCGGGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS CCA 72 bp CATCCTCGCCTCTCGGGCTGTGGTCGCCTGAAACGCTaGCTGACATCTCGCTGTCGCTGCGGACCGGGGCTT +
Preference number: 6 (lower is better)
Translates to: HPRLSGCGRLKR*LTSRCRCGPGL
Trigger: AAGCCCCGGTCCGCAGCGACAGCGAGATGTCAGCCAGCGTTTCAGGCGACCACAGCCCGAGAGGCGAGGATG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS CAA 90 bp TACTGTCTTTGGTCGTCACGCACCAGCACCTTTACGGCCACTTTCTaGGCGGCGGGTGCAGAGGCGAGCAGGTCGGCGGCCATCTGCCGG +
Preference number: 6 (lower is better)
Translates to: YCLWSSRTSTFTATF*AAGAEASRSAAICR
Trigger: CCGGCAGATGGCCGCCGACCTGCTCGCCTCTGCACCCGCCGCCAAGAAAGTGGCCGTAAAGGTGCTGGTGCGTGACGACCAAAGACAGTA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS CCA 72 bp CCAGGGCTAACGCTGTCATCCTCGCCTCTCGGGCTGTaGTCGCCTGAAACGCTGGCTGACATCTCGCTGTCG +
Preference number: 6 (lower is better)
Translates to: PGLTLSSSPLGL*SPETLADISLS
Trigger: CGACAGCGAGATGTCAGCCAGCGTTTCAGGCGACCACAGCCCGAGAGGCGAGGATGACAGCGTTAGCCCTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS CAA 72 bp CCCTCCGGCGTAGCCAACCCGCCGCGCTCCTCTTTCTaGTTGAGGATCGCCTGGATGGAGAAGGGCGTCAAG +
Preference number: 6 (lower is better)
Translates to: PSGVANPPRSSF*LRIAWMEKGVK
Trigger: CTTGACGCCCTTCTCCATCCAGGCGATCCTCAACAAGAAAGAGGAGCGCGGCGGGTTGGCTACGCCGGAGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS CAA 90 bp CAGAAGGGAAGGTGGCCTCAGCACCTCTCCGGGCAAATACTGTCTTaGGTCGTCACGCACCAGCACCTTTACGGCCACTTTCTTGGCGGC +
Preference number: 6 (lower is better)
Translates to: QKGRWPQHLSGQILS*VVTHQHLYGHFLGG
Trigger: GCCGCCAAGAAAGTGGCCGTAAAGGTGCTGGTGCGTGACGACCAAAGACAGTATTTGCCCGGAGAGGTGCTGAGGCCACCTTCCCTTCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS CCA 72 bp GGTGGCCTCAGCACCTCTCCGGGCAAATACTGTCTTTaGTCGTCACGCACCAGCACCTTTACGGCCACTTTC +
Preference number: 6 (lower is better)
Translates to: GGLSTSPGKYCL*SSRTSTFTATF
Trigger: GAAAGTGGCCGTAAAGGTGCTGGTGCGTGACGACCAAAGACAGTATTTGCCCGGAGAGGTGCTGAGGCCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8
CDS CAA 72 bp AGGTGGCCTCAGCACCTCTCCGGGCAAATACTGTCTTaGGTCGTCACGCACCAGCACCTTTACGGCCACTTT +
Preference number: 6 (lower is better)
Translates to: RWPQHLSGQILS*VVTHQHLYGHF
Trigger: AAAGTGGCCGTAAAGGTGCTGGTGCGTGACGACCAAAGACAGTATTTGCCCGGAGAGGTGCTGAGGCCACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060820.8