Pregenerated sensors for NKX3-1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022061Ensembl transcript IDs: ENSMUST00000022646.9
Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCGCGCGCACACACACACACACACATCTGTGGATGGAAGCCTCGGTaGGGTTGTATTTTGAAGACAGTTTACCTCTCCTTGCTGGTTAGC | + |
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Preference number: 1 (lower is better) Translates to: ARAHTHTHICGWKPR*GCILKTVYLSLLVS Trigger: GCTAACCAGCAAGGAGAGGTAAACTGTCTTCAAAATACAACCTCACCGAGGCTTCCATCCACAGATGTGTGTGTGTGTGTGTGCGCGCGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR GCA 90 bp | ACTGGGACTACATCTTCAAATAGTCACTGCCCCAGATCTTTCACCTaGCCACCAGAGAAGAATTGGAGTGTTCCCTGGGAACCCCCAACA | + |
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Preference number: 1 (lower is better) Translates to: TGTTSSNSHCPRSFT*PPEKNWSVPWEPPT Trigger: TGTTGGGGGTTCCCAGGGAACACTCCAATTCTTCTCTGGTGGGCAGGTGAAAGATCTGGGGCAGTGACTATTTGAAGATGTAGTCCCAGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR CCA 90 bp | AGCCAAAAGACGGATAGAAAGAAGAGAACTGGACTCCTCCGGCTTTaGTATGGTCTAACGCTACCACAGTGGTCAGCAACAAGGGACACG | + |
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Preference number: 1 (lower is better) Translates to: SQKTDRKKRTGLLRL*YGLTLPQWSATRDT Trigger: CGTGTCCCTTGTTGCTGACCACTGTGGTAGCGTTAGACCATACCAAAGCCGGAGGAGTCCAGTTCTCTTCTTTCTATCCGTCTTTTGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR TCA 90 bp | CACACACACACATCTGTGGATGGAAGCCTCGGTGAGGTTGTATTTTaGAGACAGTTTACCTCTCCTTGCTGGTTAGCTTGGGCTGACAGC | + |
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Preference number: 1 (lower is better) Translates to: HTHTSVDGSLGEVVF*RQFTSPCWLAWADS Trigger: GCTGTCAGCCCAAGCTAACCAGCAAGGAGAGGTAAACTGTCTTCAAAATACAACCTCACCGAGGCTTCCATCCACAGATGTGTGTGTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR GCA 90 bp | ATTGCATCTGTAGCCATTCTAAGTTCTGGAAACAAGACTCAAACTTaGCTGGCTCTCTCTAAACAGGGGAGCGGGCAGCAGTCACCTACA | + |
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Preference number: 1 (lower is better) Translates to: IASVAILSSGNKTQT*LALSKQGSGQQSPT Trigger: TGTAGGTGACTGCTGCCCGCTCCCCTGTTTAGAGAGAGCCAGGCAAGTTTGAGTCTTGTTTCCAGAACTTAGAATGGCTACAGATGCAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR GCA 90 bp | ACCTACAGGACACTTGGAACTGGGACTACATCTTCAAATAGTCACTaGCCCAGATCTTTCACCTGCCCACCAGAGAAGAATTGGAGTGTT | + |
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Preference number: 1 (lower is better) Translates to: TYRTLGTGTTSSNSH*PRSFTCPPEKNWSV Trigger: AACACTCCAATTCTTCTCTGGTGGGCAGGTGAAAGATCTGGGGCAGTGACTATTTGAAGATGTAGTCCCAGTTCCAAGTGTCCTGTAGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR GCA 90 bp | TTGCTTGGCCCTTCCATGATACTCAGTCATGGGAGAGGATGGAGTTaGCACAACAGAATTCCTAGGAACGATATAGCCATTGCATCTGTA | + |
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Preference number: 1 (lower is better) Translates to: LLGPSMILSHGRGWS*HNRIPRNDIAIASV Trigger: TACAGATGCAATGGCTATATCGTTCCTAGGAATTCTGTTGTGGCAACTCCATCCTCTCCCATGACTGAGTATCATGGAAGGGCCAAGCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR CCA 90 bp | TACCTCCTTTATCTCCCATTCGGCAGGTTACCTGAGATATCAGGATaGAAAAGGGAAGGTCAACCAATTCTCTTTTTCACTCCTACCACT | + |
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Preference number: 1 (lower is better) Translates to: YLLYLPFGRLPEISG*KREGQPILFFTPTT Trigger: AGTGGTAGGAGTGAAAAAGAGAATTGGTTGACCTTCCCTTTTCCATCCTGATATCTCAGGTAACCTGCCGAATGGGAGATAAAGGAGGTA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR CCA 90 bp | GATTTCTCACTGTATAGCACTGAGTGGTGGGATAAAGGGATTTCCTaGCCCCAGAAAGTCTCATTTGTTATAAGTGTGCTCTACCTCCTT | + |
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Preference number: 1 (lower is better) Translates to: DFSLYSTEWWDKGIS*PQKVSFVISVLYLL Trigger: AAGGAGGTAGAGCACACTTATAACAAATGAGACTTTCTGGGGCCAGGAAATCCCTTTATCCCACCACTCAGTGCTATACAGTGAGAAATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR TCA 90 bp | TATAAGTGTGCTCTACCTCCTTTATCTCCCATTCGGCAGGTTACCTaGGATATCAGGATGGAAAAGGGAAGGTCAACCAATTCTCTTTTT | + |
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Preference number: 1 (lower is better) Translates to: YKCALPPLSPIRQVT*DIRMEKGRSTNSLF Trigger: AAAAAGAGAATTGGTTGACCTTCCCTTTTCCATCCTGATATCTCAGGTAACCTGCCGAATGGGAGATAAAGGAGGTAGAGCACACTTATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR-3UTR GCA 90 bp | TTAGCTTGGGCTGACAGCAGGACCCCTCCATCTCCCCCAGATCCCTCAGCAGTGTCCGCGTGTGTACCCTaGCACACTCAGGCTGCCCTG | + |
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Preference number: 2 (lower is better) Translates to: LAWADSRTPPSPPDPSAVSACVP*HTQAAL Trigger: CAGGGCAGCCTGAGTGTGGCAGGGTACACACGCGGA...CACTGCTGAGGGATCTGGGGGAGATGGAGGGGTCCTGCTGTCAGCCCAAGCTAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR-3UTR TCA 90 bp | TTAGCTTGGGCTGACAGCAGGACCCCTCCATCTCCCCCAGATCCCTCAGCAGTGTGCTTGGCCCTTCCATaGTACTCAGTCATGGGAGAG | + |
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Preference number: 2 (lower is better) Translates to: LAWADSRTPPSPPDPSAVCLALP*YSVMGE Trigger: CTCTCCCATGACTGAGTATCATGGAAGGGCCAAGCA...CACTGCTGAGGGATCTGGGGGAGATGGAGGGGTCCTGCTGTCAGCCCAAGCTAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR CAA 90 bp | ACCTCTGCCTACAGGGATCCCCAGGACCCCAATGGGCATCAGCCTTaGAACTGTAACACAGAGCTAGCACACAGCCCTGCGAAAGAACCT | + |
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Preference number: 2 (lower is better) Translates to: TSAYRDPQDPNGHQP*NCNTELAHSPAKEP Trigger: AGGTTCTTTCGCAGGGCTGTGTGCTAGCTCTGTGTTACAGTTCAAAGGCTGATGCCCATTGGGGTCCTGGGGATCCCTGTAGGCAGAGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR-3UTR GCA 90 bp | GAAGCTGCAGGCCCTCCTGAGTCTAAGCAGGAAGGGCAGGAGAGTCCTTTTCTTAGAGGAAGTCTGTTTTaGAGCCCACCCCTGCAGGCA | + |
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Preference number: 2 (lower is better) Translates to: EAAGPPESKQEGQESPFLRGSLF*SPPLQA Trigger: TGCCTGCAGGGGTGGGCTGCAAAACAGACTTCCTCT...AAGAAAAGGACTCTCCTGCCCTTCCTGCTTAGACTCAGGAGGGCCTGCAGCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR-3UTR GCA 90 bp | TCTGCCTACAGGGATCCCCAGGACCCCAATGGGCATCAGCCTTTGAACTGTAACGGGAGAGGATGGAGTTaGCACAACAGAATTCCTAGG | + |
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Preference number: 2 (lower is better) Translates to: SAYRDPQDPNGHQPLNCNGRGWS*HNRIPR Trigger: CCTAGGAATTCTGTTGTGGCAACTCCATCCTCTCCC...GTTACAGTTCAAAGGCTGATGCCCATTGGGGTCCTGGGGATCCCTGTAGGCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR CAA 90 bp | GCTCTCTCTAAACAGGGGAGCGGGCAGCAGTCACCTACAGGACACTaGGAACTGGGACTACATCTTCAAATAGTCACTGCCCCAGATCTT | + |
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Preference number: 2 (lower is better) Translates to: ALSKQGSGQQSPTGH*ELGLHLQIVTAPDL Trigger: AAGATCTGGGGCAGTGACTATTTGAAGATGTAGTCCCAGTTCCAAGTGTCCTGTAGGTGACTGCTGCCCGCTCCCCTGTTTAGAGAGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR-3UTR GCA 90 bp | AGGGGAGCGGGCAGCAGTCACCTACAGGACACTTGGAACTGGGACTACATCTTCGAACCCCCAACAGTTTaGATCTGTACATTTCTTGCT | + |
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Preference number: 2 (lower is better) Translates to: RGAGSSHLQDTWNWDYIFEPPTV*ICTFLA Trigger: AGCAAGAAATGTACAGATGCAAACTGTTGGGGGTTC...GAAGATGTAGTCCCAGTTCCAAGTGTCCTGTAGGTGACTGCTGCCCGCTCCCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR-3UTR GCA 90 bp | TCTGCCTACAGGGATCCCCAGGACCCCAATGGGCATCAGCCTTTGAACTGTAACTCTTCAAATAGTCACTaGCCCAGATCTTTCACCTGC | + |
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Preference number: 2 (lower is better) Translates to: SAYRDPQDPNGHQPLNCNSSNSH*PRSFTC Trigger: GCAGGTGAAAGATCTGGGGCAGTGACTATTTGAAGA...GTTACAGTTCAAAGGCTGATGCCCATTGGGGTCCTGGGGATCCCTGTAGGCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR-3UTR CCA 90 bp | AGAAAGAAGAGAACTGGACTCCTCCGGCTTTGGTATGGTCTAACGCTACCACAGCCACCAGAGAAGAATTaGAGTGTTCCCTGGGAACCC | + |
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Preference number: 2 (lower is better) Translates to: RKKRTGLLRLWYGLTLPQPPEKN*SVPWEP Trigger: GGGTTCCCAGGGAACACTCCAATTCTTCTCTGGTGG...CTGTGGTAGCGTTAGACCATACCAAAGCCGGAGGAGTCCAGTTCTCTTCTTTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR-3UTR GCA 90 bp | TTAGCTTGGGCTGACAGCAGGACCCCTCCATCTCCCCCAGATCCCTCAGCAGTGACAGTTTCTGATATATaGAGTTATCAGCAGAACTGT | + |
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Preference number: 2 (lower is better) Translates to: LAWADSRTPPSPPDPSAVTVSDI*SYQQNC Trigger: ACAGTTCTGCTGATAACTGCATATATCAGAAACTGT...CACTGCTGAGGGATCTGGGGGAGATGGAGGGGTCCTGCTGTCAGCCCAAGCTAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR-3UTR GCA 90 bp | AGAAAGAAGAGAACTGGACTCCTCCGGCTTTGGTATGGTCTAACGCTACCACAGCAGTTTACCTCTCCTTaGTGGTTAGCTTGGGCTGAC | + |
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Preference number: 2 (lower is better) Translates to: RKKRTGLLRLWYGLTLPQQFTSP*WLAWAD Trigger: GTCAGCCCAAGCTAACCAGCAAGGAGAGGTAAACTG...CTGTGGTAGCGTTAGACCATACCAAAGCCGGAGGAGTCCAGTTCTCTTCTTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR-3UTR CCA 90 bp | AGAAAGAAGAGAACTGGACTCCTCCGGCTTTGGTATGGTCTAACGCTACCACAGTATAGCACTGAGTGGTaGGATAAAGGGATTTCCTGG | + |
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Preference number: 2 (lower is better) Translates to: RKKRTGLLRLWYGLTLPQYSTEW*DKGISW Trigger: CCAGGAAATCCCTTTATCCCACCACTCAGTGCTATA...CTGTGGTAGCGTTAGACCATACCAAAGCCGGAGGAGTCCAGTTCTCTTCTTTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR-3UTR TCA 90 bp | TCAATCACTAAGGGTCACCCCCTCCCACCCCCATTCTTCAAATCTTCCGTTTACAGGGAAGACAGTTTCTaGTATATGCAGTTATCAGCA | + |
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Preference number: 2 (lower is better) Translates to: SITKGHPLPPPFFKSSVYREDSF*YMQLSA Trigger: TGCTGATAACTGCATATATCAGAAACTGTCTTCCCT...GTAAACGGAAGATTTGAAGAATGGGGGTGGGAGGGGGTGACCCTTAGTGATTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR-3UTR GCA 90 bp | GATATCAGGATGGAAAAGGGAAGGTCAACCAATTCTCTTTTTCACTCCTACCACCCCAGATCTTTCACCTaGCCACCAGAGAAGAATTGG | + |
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Preference number: 2 (lower is better) Translates to: DIRMEKGRSTNSLFHSYHPRSFT*PPEKNW Trigger: CCAATTCTTCTCTGGTGGGCAGGTGAAAGATCTGGG...GTGGTAGGAGTGAAAAAGAGAATTGGTTGACCTTCCCTTTTCCATCCTGATATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR-3UTR CCA 90 bp | GTCTCATTTGTTATAAGTGTGCTCTACCTCCTTTATCTCCCATTCGGCAGGTTAAGACTCAAACTTGCCTaGCTCTCTCTAAACAGGGGA | + |
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Preference number: 2 (lower is better) Translates to: VSFVISVLYLLYLPFGRLRLKLA*LSLNRG Trigger: TCCCCTGTTTAGAGAGAGCCAGGCAAGTTTGAGTCT...TAACCTGCCGAATGGGAGATAAAGGAGGTAGAGCACACTTATAACAAATGAGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR-3UTR CCA 90 bp | TTTCTGACTTTGCCACACACTGCACACTATAATAGTTCAAACGTAGTGAAAGTGATCCCTCCCCTTGCTTaGCCCTTCCATGATACTCAG | + |
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Preference number: 2 (lower is better) Translates to: FLTLPHTAHYNSSNVVKVIPPLA*PFHDTQ Trigger: CTGAGTATCATGGAAGGGCCAAGCAAGGGGAGGGAT...CACTTTCACTACGTTTGAACTATTATAGTGTGCAGTGTGTGGCAAAGTCAGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR-3UTR CCA 90 bp | GATATCAGGATGGAAAAGGGAAGGTCAACCAATTCTCTTTTTCACTCCTACCACAGTCATGGGAGAGGATaGAGTTGCCACAACAGAATT | + |
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Preference number: 2 (lower is better) Translates to: DIRMEKGRSTNSLFHSYHSHGRG*SCHNRI Trigger: AATTCTGTTGTGGCAACTCCATCCTCTCCCATGACT...GTGGTAGGAGTGAAAAAGAGAATTGGTTGACCTTCCCTTTTCCATCCTGATATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR-3UTR CCA 90 bp | TTTCTGACTTTGCCACACACTGCACACTATAATAGTTCAAACGTAGTGAAAGTGCATGATACTCAGTCATaGGAGAGGATGGAGTTGCCA | + |
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Preference number: 2 (lower is better) Translates to: FLTLPHTAHYNSSNVVKVHDTQS*ERMELP Trigger: TGGCAACTCCATCCTCTCCCATGACTGAGTATCATG...CACTTTCACTACGTTTGAACTATTATAGTGTGCAGTGTGTGGCAAAGTCAGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR-3UTR CCA 90 bp | GATATCAGGATGGAAAAGGGAAGGTCAACCAATTCTCTTTTTCACTCCTACCACTGTAAATCCTTGGACTaGCACATCACTGTGAAAAGG | + |
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Preference number: 2 (lower is better) Translates to: DIRMEKGRSTNSLFHSYHCKSLD*HITVKR Trigger: CCTTTTCACAGTGATGTGCCAGTCCAAGGATTTACA...GTGGTAGGAGTGAAAAAGAGAATTGGTTGACCTTCCCTTTTCCATCCTGATATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR-3UTR TCA 90 bp | TTTCTGACTTTGCCACACACTGCACACTATAATAGTTCAAACGTAGTGAAAGTGGTGAAAAGGGTAAGTTaGAAATTCCACCTTCCACCC | + |
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Preference number: 2 (lower is better) Translates to: FLTLPHTAHYNSSNVVKVVKRVS*KFHLPP Trigger: GGGTGGAAGGTGGAATTTTCAACTTACCCTTTTCAC...CACTTTCACTACGTTTGAACTATTATAGTGTGCAGTGTGTGGCAAAGTCAGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR-3UTR TCA 90 bp | TTTCTGACTTTGCCACACACTGCACACTATAATAGTTCAAACGTAGTGAAAGTGTGTCATCACAAAGTGTaGATTTTCAGGCCAGGGAAG | + |
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Preference number: 2 (lower is better) Translates to: FLTLPHTAHYNSSNVVKVCHHKV*IFRPGK Trigger: CTTCCCTGGCCTGAAAATTCACACTTTGTGATGACA...CACTTTCACTACGTTTGAACTATTATAGTGTGCAGTGTGTGGCAAAGTCAGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR-3UTR GCA 90 bp | AATCTTACACGAAATAAGACAGGCACAGATGAAAAGCATGAACGGAGAGGTCCTGAACGATATAGCCATTaGATCTGTAGCCATTCTAAG | + |
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Preference number: 2 (lower is better) Translates to: NLTRNKTGTDEKHERRGPERYSH*ICSHSK Trigger: CTTAGAATGGCTACAGATGCAATGGCTATATCGTTC...AGGACCTCTCCGTTCATGCTTTTCATCTGTGCCTGTCTTATTTCGTGTAAGATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR TCA 72 bp | AAGACAGTTTACCTCTCCTTGCTGGTTAGCTTGGGCTaGCAGCAGGACCCCTCCATCTCCCCCAGATCCCTC | + |
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Preference number: 3 (lower is better) Translates to: KTVYLSLLVSLG*QQDPSISPRSL Trigger: GAGGGATCTGGGGGAGATGGAGGGGTCCTGCTGTCAGCCCAAGCTAACCAGCAAGGAGAGGTAAACTGTCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR-3UTR CAA 90 bp | AGTCAGAGTGAGAGGAGAGAAAGTACTGATAGGGAACTCAGAGCCAAAAGACGGGGGCCATCCCTCCCCTaGCTTGGCCCTTCCATGATA | + |
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Preference number: 3 (lower is better) Translates to: SQSERRESTDRELRAKRRGPSLP*LGPSMI Trigger: TATCATGGAAGGGCCAAGCAAGGGGAGGGATGGCCC...CCGTCTTTTGGCTCTGAGTTCCCTATCAGTACTTTCTCTCCTCTCACTCTGACT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR CCA 72 bp | GTGATACCCACAGCGATACCTTTCCCATTCACAGGCTaGAGACAACAGGCCACGTTTCTACCAGTTCAGGTG | + |
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Preference number: 3 (lower is better) Translates to: VIPTAIPFPFTG*RQQATFLPVQV Trigger: CACCTGAACTGGTAGAAACGTGGCCTGTTGTCTCCAGCCTGTGAATGGGAAAGGTATCGCTGTGGGTATCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR GCA 72 bp | GTAGCCATTCTAAGTTCTGGAAACAAGACTCAAACTTaGCTGGCTCTCTCTAAACAGGGGAGCGGGCAGCAG | + |
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Preference number: 3 (lower is better) Translates to: VAILSSGNKTQT*LALSKQGSGQQ Trigger: CTGCTGCCCGCTCCCCTGTTTAGAGAGAGCCAGGCAAGTTTGAGTCTTGTTTCCAGAACTTAGAATGGCTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR GCA 72 bp | TGTCTTGGAGAGGAAGTCTGTTTTGCAGCCCACCCCTaGAGGCAAACTGTTTACACAGCTTGTCTTAACCCC | + |
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Preference number: 3 (lower is better) Translates to: CLGEEVCFAAHP*RQTVYTACLNP Trigger: GGGGTTAAGACAAGCTGTGTAAACAGTTTGCCTGCAGGGGTGGGCTGCAAAACAGACTTCCTCTCCAAGACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR GCA 72 bp | CTGGGAACCCCCAACAGTTTGCATCTGTACATTTCTTaGTTCCGACTCCTTGACATCAGCCACTGTGGCTTT | + |
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Preference number: 3 (lower is better) Translates to: LGTPNSLHLYIS*FRLLDISHCGF Trigger: AAAGCCACAGTGGCTGATGTCAAGGAGTCGGAAGCAAGAAATGTACAGATGCAAACTGTTGGGGGTTCCCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR CCA 72 bp | ACGGATAGAAAGAAGAGAACTGGACTCCTCCGGCTTTaGTATGGTCTAACGCTACCACAGTGGTCAGCAACA | + |
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Preference number: 3 (lower is better) Translates to: TDRKKRTGLLRL*YGLTLPQWSAT Trigger: TGTTGCTGACCACTGTGGTAGCGTTAGACCATACCAAAGCCGGAGGAGTCCAGTTCTCTTCTTTCTATCCGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR GCA 72 bp | ACATCTTCAAATAGTCACTGCCCCAGATCTTTCACCTaGCCACCAGAGAAGAATTGGAGTGTTCCCTGGGAA | + |
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Preference number: 3 (lower is better) Translates to: TSSNSHCPRSFT*PPEKNWSVPWE Trigger: TTCCCAGGGAACACTCCAATTCTTCTCTGGTGGGCAGGTGAAAGATCTGGGGCAGTGACTATTTGAAGATGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR-3UTR CAA 90 bp | AGAAAGAAGAGAACTGGACTCCTCCGGCTTTGGTATGGTCTAACGCTACCACAGGAAGCCTCGGTGAGGTaGTATTTTGAAGACAGTTTA | + |
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Preference number: 3 (lower is better) Translates to: RKKRTGLLRLWYGLTLPQEASVR*YFEDSL Trigger: TAAACTGTCTTCAAAATACAACCTCACCGAGGCTTC...CTGTGGTAGCGTTAGACCATACCAAAGCCGGAGGAGTCCAGTTCTCTTCTTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR TCA 72 bp | TCCTTGGACTGGCACATCACTGTGAAAAGGGTAAGTTaGAAATTCCACCTTCCACCCCCTTCACGTTCTATG | + |
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Preference number: 3 (lower is better) Translates to: SLDWHITVKRVS*KFHLPPPSRSM Trigger: CATAGAACGTGAAGGGGGTGGAAGGTGGAATTTTCAACTTACCCTTTTCACAGTGATGTGCCAGTCCAAGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR TCA 72 bp | ACATCTGTGGATGGAAGCCTCGGTGAGGTTGTATTTTaGAGACAGTTTACCTCTCCTTGCTGGTTAGCTTGG | + |
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Preference number: 3 (lower is better) Translates to: TSVDGSLGEVVF*RQFTSPCWLAW Trigger: CCAAGCTAACCAGCAAGGAGAGGTAAACTGTCTTCAAAATACAACCTCACCGAGGCTTCCATCCACAGATGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR TCA 72 bp | CACACACACACACACATCTGTGGATGGAAGCCTCGGTaGGGTTGTATTTTGAAGACAGTTTACCTCTCCTTG | + |
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Preference number: 3 (lower is better) Translates to: HTHTHICGWKPR*GCILKTVYLSL Trigger: CAAGGAGAGGTAAACTGTCTTCAAAATACAACCTCACCGAGGCTTCCATCCACAGATGTGTGTGTGTGTGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR TCA 72 bp | GCTCTACCTCCTTTATCTCCCATTCGGCAGGTTACCTaGGATATCAGGATGGAAAAGGGAAGGTCAACCAAT | + |
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Preference number: 3 (lower is better) Translates to: ALPPLSPIRQVT*DIRMEKGRSTN Trigger: ATTGGTTGACCTTCCCTTTTCCATCCTGATATCTCAGGTAACCTGCCGAATGGGAGATAAAGGAGGTAGAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR-3UTR CAA 90 bp | TTTCTGACTTTGCCACACACTGCACACTATAATAGTTCAAACGTAGTGAAAGTGCCCACCAGAGAAGAATaGGAGTGTTCCCTGGGAACC | + |
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Preference number: 3 (lower is better) Translates to: FLTLPHTAHYNSSNVVKVPTREE*ECSLGT Trigger: GGTTCCCAGGGAACACTCCAATTCTTCTCTGGTGGG...CACTTTCACTACGTTTGAACTATTATAGTGTGCAGTGTGTGGCAAAGTCAGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR-3UTR CAA 90 bp | AGTCAGAGTGAGAGGAGAGAAAGTACTGATAGGGAACTCAGAGCCAAAAGACGGTGTGAAAAGGGTAAGTaGAAAATTCCACCTTCCACC | + |
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Preference number: 3 (lower is better) Translates to: SQSERRESTDRELRAKRRCEKGK*KIPPST Trigger: GGTGGAAGGTGGAATTTTCAACTTACCCTTTTCACA...CCGTCTTTTGGCTCTGAGTTCCCTATCAGTACTTTCTCTCCTCTCACTCTGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR GCA 72 bp | CCTTCCATGATACTCAGTCATGGGAGAGGATGGAGTTaGCACAACAGAATTCCTAGGAACGATATAGCCATT | + |
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Preference number: 3 (lower is better) Translates to: PSMILSHGRGWS*HNRIPRNDIAI Trigger: AATGGCTATATCGTTCCTAGGAATTCTGTTGTGGCAACTCCATCCTCTCCCATGACTGAGTATCATGGAAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR CCA 72 bp | CTGTATAGCACTGAGTGGTGGGATAAAGGGATTTCCTaGCCCCAGAAAGTCTCATTTGTTATAAGTGTGCTC | + |
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Preference number: 3 (lower is better) Translates to: LYSTEWWDKGIS*PQKVSFVISVL Trigger: GAGCACACTTATAACAAATGAGACTTTCTGGGGCCAGGAAATCCCTTTATCCCACCACTCAGTGCTATACAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR-3UTR CAA 90 bp | ACCCCCATTCTTCAAATCTTCCGTTTACCCTCATTTTTACAAGGGCAGAGAGAAGGAACCCCCAACAGTTaGCATCTGTACATTTCTTGC | + |
|
Preference number: 3 (lower is better) Translates to: TPILQIFRLPSFLQGQREGTPNS*HLYISC Trigger: GCAAGAAATGTACAGATGCAAACTGTTGGGGGTTCC...TTCTCTCTGCCCTTGTAAAAATGAGGGTAAACGGAAGATTTGAAGAATGGGGGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR CCA 72 bp | GTTGTTAAACCAAGAAAGGTAAACCTTGGGAGGAGGTaGGAGCAAATCTTACACGAAATAAGACAGGCACAG | + |
|
Preference number: 3 (lower is better) Translates to: VVKPRKVNLGRR*EQILHEIRQAQ Trigger: CTGTGCCTGTCTTATTTCGTGTAAGATTTGCTCCCACCTCCTCCCAAGGTTTACCTTTCTTGGTTTAACAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR CCA 72 bp | AGGAAATTAAAAGATTTCTCACTGTATAGCACTGAGTaGTGGGATAAAGGGATTTCCTGGCCCCAGAAAGTC | + |
|
Preference number: 3 (lower is better) Translates to: RKLKDFSLYSTE*WDKGISWPQKV Trigger: GACTTTCTGGGGCCAGGAAATCCCTTTATCCCACCACTCAGTGCTATACAGTGAGAAATCTTTTAATTTCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR-3UTR CAA 90 bp | TTTCTGACTTTGCCACACACTGCACACTATAATAGTTCAAACGTAGTGAAAGTGGCCACCAACAGTAAATaGGCCCATTTAAAAGGAGGA | + |
|
Preference number: 3 (lower is better) Translates to: FLTLPHTAHYNSSNVVKVATNSK*AHLKGG Trigger: TCCTCCTTTTAAATGGGCCAATTTACTGTTGGTGGC...CACTTTCACTACGTTTGAACTATTATAGTGTGCAGTGTGTGGCAAAGTCAGAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| CDS-3UTR TCA 90 bp | TTAGCTTGGGCTGACAGCAGGACCCCTCCATCTCCCCCAGATCCCTCAGCAGTGAGGTTCTTGGCCAGGTaGGCCCTCTCAGGGGCAGAC | + |
|
Preference number: 4 (lower is better) Translates to: LAWADSRTPPSPPDPSAVRFLAR*ALSGAD Trigger: GTCTGCCCCTGAGAGGGCTCACCTGGCCAAGAACCT...CACTGCTGAGGGATCTGGGGGAGATGGAGGGGTCCTGCTGTCAGCCCAAGCTAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| CDS-3UTR CCA 90 bp | CTAGCACACAGCCCTGCGAAAGAACCTGTCATCTTCAGCTCTCATGTCTTTAAACCGGGAGCGCTTCTGTaGCTGCTTGGTGACCTGGGG | + |
|
Preference number: 4 (lower is better) Translates to: LAHSPAKEPVIFSSHVFKPGALL*LLGDLG Trigger: CCCCAGGTCACCAAGCAGCCACAGAAGCGCTCCCGG...TTTAAAGACATGAGAGCTGAAGATGACAGGTTCTTTCGCAGGGCTGTGTGCTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR CAA 72 bp | CTGCCCCAGATCTTTCACCTGCCCACCAGAGAAGAATaGGAGTGTTCCCTGGGAACCCCCAACAGTTTGCAT | + |
|
Preference number: 4 (lower is better) Translates to: LPQIFHLPTREE*ECSLGTPNSLH Trigger: ATGCAAACTGTTGGGGGTTCCCAGGGAACACTCCAATTCTTCTCTGGTGGGCAGGTGAAAGATCTGGGGCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR CAA 72 bp | AAACAGGGGAGCGGGCAGCAGTCACCTACAGGACACTaGGAACTGGGACTACATCTTCAAATAGTCACTGCC | + |
|
Preference number: 4 (lower is better) Translates to: KQGSGQQSPTGH*ELGLHLQIVTA Trigger: GGCAGTGACTATTTGAAGATGTAGTCCCAGTTCCAAGTGTCCTGTAGGTGACTGCTGCCCGCTCCCCTGTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR CAA 72 bp | AAGAGGAAATCCTCATCTAAGGGGCCATCCCTCCCCTaGCTTGGCCCTTCCATGATACTCAGTCATGGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: KRKSSSKGPSLP*LGPSMILSHGR Trigger: TCTCCCATGACTGAGTATCATGGAAGGGCCAAGCAAGGGGAGGGATGGCCCCTTAGATGAGGATTTCCTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| CDS-3UTR TCA 90 bp | GAAGCTGCAGGCCCTCCTGAGTCTAAGCAGGAAGGGCAGGAGAGTCCTTTTCTTGGTACTTCTGATGGCTaGACTTCCTCTCCAACTCAA | + |
|
Preference number: 4 (lower is better) Translates to: EAAGPPESKQEGQESPFLGTSDG*TSSPTQ Trigger: TTGAGTTGGAGAGGAAGTTCAGCCATCAGAAGTACC...AAGAAAAGGACTCTCCTGCCCTTCCTGCTTAGACTCAGGAGGGCCTGCAGCTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| CDS-3UTR CCA 90 bp | AGGGGAGCGGGCAGCAGTCACCTACAGGACACTTGGAACTGGGACTACATCTTCACAGCTGCTTTCGCTTaGTCTTATAGCGTCTGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: RGAGSSHLQDTWNWDYIFTAAFA*SYSVCS Trigger: AGAACAGACGCTATAAGACCAAGCGAAAGCAGCTGT...GAAGATGTAGTCCCAGTTCCAAGTGTCCTGTAGGTGACTGCTGCCCGCTCCCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR CAA 72 bp | CTCCCCCAGATCCCTCAGCAGTGCCAGCCCTTCCTTTaGTCCTGTTCTTCCTTACACATGAAAAACAAGCAC | + |
|
Preference number: 4 (lower is better) Translates to: LPQIPQQCQPFL*SCSSLHMKNKH Trigger: GTGCTTGTTTTTCATGTGTAAGGAAGAACAGGACAAAAGGAAGGGCTGGCACTGCTGAGGGATCTGGGGGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| CDS-3UTR CCA 90 bp | TTTCTGACTTTGCCACACACTGCACACTATAATAGTTCAAACGTAGTGAAAGTGCTTGGACTGCGTGGGTaGCGCTGCCCAAGGACTGCG | + |
|
Preference number: 4 (lower is better) Translates to: FLTLPHTAHYNSSNVVKVLGLRG*RCPRTA Trigger: CGCAGTCCTTGGGCAGCGCCACCCACGCAGTCCAAG...CACTTTCACTACGTTTGAACTATTATAGTGTGCAGTGTGTGGCAAAGTCAGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR CAA 72 bp | ACAGGGTGCAAGCCGCCAGCTTTCTATCAACTTCCTTaGGCAGTTTTGCCACCAACAGTAAATTGGCCCATT | + |
|
Preference number: 4 (lower is better) Translates to: TGCKPPAFYQLP*AVLPPTVNWPI Trigger: AATGGGCCAATTTACTGTTGGTGGCAAAACTGCCAAAGGAAGTTGATAGAAAGCTGGCGGCTTGCACCCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| CDS-3UTR GCA 90 bp | CTTGGGAGGAGGTGGGAGCAAATCTTACACGAAATAAGACAGGCACAGATGAAATACCAGAAAGATGGATaGCAGCTGCCCAGACAGTAC | + |
|
Preference number: 4 (lower is better) Translates to: LGRRWEQILHEIRQAQMKYQKDG*QLPRQY Trigger: GTACTGTCTGGGCAGCTGGCATCCATCTTTCTGGTA...TTTCATCTGTGCCTGTCTTATTTCGTGTAAGATTTGCTCCCACCTCCTCCCAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| CDS-3UTR TCA 90 bp | AATCTTACACGAAATAAGACAGGCACAGATGAAAAGCATGAACGGAGAGGTCCTGCAGACAGGTACTTCTaGTGGCTGAACTTCCTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: NLTRNKTGTDEKHERRGPADRYF*WLNFLS Trigger: GGAGAGGAAGTTCAGCCATCAGAAGTACCTGTCTGC...AGGACCTCTCCGTTCATGCTTTTCATCTGTGCCTGTCTTATTTCGTGTAAGATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| CDS-3UTR GCA 90 bp | GTCTCATTTGTTATAAGTGTGCTCTACCTCCTTTATCTCCCATTCGGCAGGTTAAAGATGGATGCCAGCTaGCCAGACAGTACAGGTAGG | + |
|
Preference number: 4 (lower is better) Translates to: VSFVISVLYLLYLPFGRLKMDAS*PDSTGR Trigger: CCTACCTGTACTGTCTGGGCAGCTGGCATCCATCTT...TAACCTGCCGAATGGGAGATAAAGGAGGTAGAGCACACTTATAACAAATGAGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| 3UTR CAA 72 bp | ACACACACACATCTGTGGATGGAAGCCTCGGTGAGGTaGTATTTTGAAGACAGTTTACCTCTCCTTGCTGGT | + |
|
Preference number: 4 (lower is better) Translates to: THTHLWMEASVR*YFEDSLPLLAG Trigger: ACCAGCAAGGAGAGGTAAACTGTCTTCAAAATACAACCTCACCGAGGCTTCCATCCACAGATGTGTGTGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| CDS-3UTR CCA 90 bp | ACCCCCATTCTTCAAATCTTCCGTTTACCCTCATTTTTACAAGGGCAGAGAGAAAGACCAAGGAGGTACTaGGCAGGCTGTCATCTTTCA | + |
|
Preference number: 4 (lower is better) Translates to: TPILQIFRLPSFLQGQRERPRRY*AGCHLS Trigger: TGAAAGATGACAGCCTGCCCAGTACCTCCTTGGTCT...TTCTCTCTGCCCTTGTAAAAATGAGGGTAAACGGAAGATTTGAAGAATGGGGGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| CDS-3UTR CCA 90 bp | AAGTTTAACTCAAGAGGAAATCCTCATCTAAGGGGCCATCCCTCCCCTTGCTTGAACCATATTTTGACTTaGGTTTCGGTGAGTTTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: KFNSRGNPHLRGHPSPCLNHILT*VSVSLR Trigger: CCTCAAACTCACCGAAACCCAAGTCAAAATATGGTT...CAAGCAAGGGGAGGGATGGCCCCTTAGATGAGGATTTCCTCTTGAGTTAAACTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| CDS-3UTR GCA 90 bp | ACCCCCATTCTTCAAATCTTCCGTTTACCCTCATTTTTACAAGGGCAGAGAGAAATAAGTCTCAAAATGTaGATCAGACTCGGGTTCAGT | + |
|
Preference number: 4 (lower is better) Translates to: TPILQIFRLPSFLQGQREISLKM*IRLGFS Trigger: ACTGAACCCGAGTCTGATGCACATTTTGAGACTTAT...TTCTCTCTGCCCTTGTAAAAATGAGGGTAAACGGAAGATTTGAAGAATGGGGGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| CDS TCA 90 bp | TGGAGCGGAGTCCCTCCTAGGGTCCGGCGAGTGCTGCGGATTGCCTaGGTGTCCCCCGTGCCGCTCCGCGCGGTCCCGCAGGATGTCCTG | + |
|
Preference number: 5 (lower is better) Translates to: WSGVPPRVRRVLRIA*VSPVPLRAVPQDVL Trigger: CAGGACATCCTGCGGGACCGCGCGGAGCGGCACGGGGGACACTCAGGCAATCCGCAGCACTCGCCGGACCCTAGGAGGGACTCCGCTCCA 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| CDS GCA 90 bp | CTGGATGAGGAAGGAGGTGAGCCGCTTGGACTGCGTGGGTGGCGCTaGCCAAGGACTGCGGCCACCCGCCTCCACCCGTGGCTCTCGGGG | + |
|
Preference number: 5 (lower is better) Translates to: LDEEGGEPLGLRGWR*PRTAATRLHPWLSG Trigger: CCCCGAGAGCCACGGGTGGAGGCGGGTGGCCGCAGTCCTTGGGCAGCGCCACCCACGCAGTCCAAGCGGCTCACCTCCTTCCTCATCCAG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| CDS GCA 90 bp | CTCCTAGGGTCCGGCGAGTGCTGCGGATTGCCTGAGTGTCCCCCGTaGCGCTCCGCGCGGTCCCGCAGGATGTCCTGGATGAGGAAGGAG | + |
|
Preference number: 5 (lower is better) Translates to: LLGSGECCGLPECPP*RSARSRRMSWMRKE Trigger: CTCCTTCCTCATCCAGGACATCCTGCGGGACCGCGCGGAGCGGCACGGGGGACACTCAGGCAATCCGCAGCACTCGCCGGACCCTAGGAG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| CDS CCA 90 bp | GATGTCCTGGATGAGGAAGGAGGTGAGCCGCTTGGACTGCGTGGGTaGCGCTGCCCAAGGACTGCGGCCACCCGCCTCCACCCGTGGCTC | + |
|
Preference number: 5 (lower is better) Translates to: DVLDEEGGEPLGLRG*RCPRTAATRLHPWL Trigger: GAGCCACGGGTGGAGGCGGGTGGCCGCAGTCCTTGGGCAGCGCCACCCACGCAGTCCAAGCGGCTCACCTCCTTCCTCATCCAGGACATC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| CDS-3UTR CAA 90 bp | CCATCTCCCCCAGATCCCTCAGCAGTGCCAGCCCTTCCTTTTGTCCTGTTCTTCGAACCATATTTTGACTaGGGTTTCGGTGAGTTTGAG | + |
|
Preference number: 5 (lower is better) Translates to: PSPPDPSAVPALPFVLFFEPYFD*GFGEFE Trigger: CTCAAACTCACCGAAACCCAAGTCAAAATATGGTTC...GAAGAACAGGACAAAAGGAAGGGCTGGCACTGCTGAGGGATCTGGGGGAGATGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| CDS CAA 90 bp | GGCTCTGGAGCGGAGTCCCTCCTAGGGTCCGGCGAGTGCTGCGGATaGCCTGAGTGTCCCCCGTGCCGCTCCGCGCGGTCCCGCAGGATG | + |
|
Preference number: 6 (lower is better) Translates to: GSGAESLLGSGECCG*PECPPCRSARSRRM Trigger: CATCCTGCGGGACCGCGCGGAGCGGCACGGGGGACACTCAGGCAATCCGCAGCACTCGCCGGACCCTAGGAGGGACTCCGCTCCAGAGCC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| CDS GCA 72 bp | TCCGGCGAGTGCTGCGGATTGCCTGAGTGTCCCCCGTaGCGCTCCGCGCGGTCCCGCAGGATGTCCTGGATG | + |
|
Preference number: 6 (lower is better) Translates to: SGECCGLPECPP*RSARSRRMSWM Trigger: CATCCAGGACATCCTGCGGGACCGCGCGGAGCGGCACGGGGGACACTCAGGCAATCCGCAGCACTCGCCGGA 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| CDS CCA 72 bp | GATGAGGAAGGAGGTGAGCCGCTTGGACTGCGTGGGTaGCGCTGCCCAAGGACTGCGGCCACCCGCCTCCAC | + |
|
Preference number: 6 (lower is better) Translates to: DEEGGEPLGLRG*RCPRTAATRLH Trigger: GTGGAGGCGGGTGGCCGCAGTCCTTGGGCAGCGCCACCCACGCAGTCCAAGCGGCTCACCTCCTTCCTCATC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| CDS CCA 72 bp | GCGGCCCGGGAGCGCTTCTGTGGCTGCTTGGTGACCTaGGGGGCACTTGCTAAGTCCCCTGGATTATGTTCA | + |
|
Preference number: 6 (lower is better) Translates to: AARERFCGCLVT*GALAKSPGLCS Trigger: TGAACATAATCCAGGGGACTTAGCAAGTGCCCCCCAGGTCACCAAGCAGCCACAGAAGCGCTCCCGGGCCGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| CDS TCA 72 bp | GAGCCCTCTCAGGGGCAGACAGGTACTTCTGATGGCTaGACTTCCTCTCCAACTCAATCACCTGAGTGTGAG | + |
|
Preference number: 6 (lower is better) Translates to: EPSQGQTGTSDG*TSSPTQSPECE Trigger: CTCACACTCAGGTGATTGAGTTGGAGAGGAAGTTCAGCCATCAGAAGTACCTGTCTGCCCCTGAGAGGGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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| CDS GCA 72 bp | ATTATGTTCACAGTCCAAAAGATAAGTCTCAAAATGTaGATCAGACTCGGGTTCAGTCGGTGTCTCCGCGGG | + |
|
Preference number: 6 (lower is better) Translates to: IMFTVQKISLKM*IRLGFSRCLRG Trigger: CCCGCGGAGACACCGACTGAACCCGAGTCTGATGCACATTTTGAGACTTATCTTTTGGACTGTGAACATAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022646.9 |
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