Pregenerated sensors for NKX2-9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000058669Ensembl transcript IDs: ENSMUST00000072631.6
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR GCA 90 bp | GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTaGCGGTTAGGGCAATCCAGGGACCCAGGACTCAAGAAGGGCTCC | + |
Preference number: 1 (lower is better) Translates to: VCVCVCVCVCVCVCV*RLGQSRDPGLKKGS Trigger: GGAGCCCTTCTTGAGTCCTGGGTCCCTGGATTGCCCTAACCGGCAAACACACACACACACACACACACACACACACACACACACACACAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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3UTR CCA 90 bp | AAAATCTTGCTCTGGGACTGGCGCCCGGGCAACCATTCCGAGTCTTaGAGACAGTCCCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT | + |
Preference number: 1 (lower is better) Translates to: KILLWDWRPGNHSES*RQSLVCVCVCVCVC Trigger: ACACACACACACACACACACACACACACACAAGGGACTGTCTCCAAGACTCGGAATGGTTGCCCGGGCGCCAGTCCCAGAGCAAGATTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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3UTR CAA 90 bp | TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTaGCCGGTTAGGGCAATCCAGGGACCCAGGACTCAAGAAGGGCTC | + |
Preference number: 2 (lower is better) Translates to: CVCVCVCVCVCVCVC*PVRAIQGPRTQEGL Trigger: GAGCCCTTCTTGAGTCCTGGGTCCCTGGATTGCCCTAACCGGCAAACACACACACACACACACACACACACACACACACACACACACACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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3UTR TCA 72 bp | CAGGACTCAAGAAGGGCTCCTGCAAGGGTCACCTCCTaGCTTTGGTGTGGCTGTAGCTCTACTGCGGCGGAC | + |
Preference number: 3 (lower is better) Translates to: QDSRRAPARVTS*LWCGCSSTAAD Trigger: GTCCGCCGCAGTAGAGCTACAGCCACACCAAAGTCAGGAGGTGACCCTTGCAGGAGCCCTTCTTGAGTCCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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3UTR CCA 72 bp | CTCTGGGACTGGCGCCCGGGCAACCATTCCGAGTCTTaGAGACAGTCCCTTGTGTGTGTGTGTGTGTGTGTG | + |
Preference number: 3 (lower is better) Translates to: LWDWRPGNHSES*RQSLVCVCVCV Trigger: CACACACACACACACACACACAAGGGACTGTCTCCAAGACTCGGAATGGTTGCCCGGGCGCCAGTCCCAGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS-3UTR GCA 90 bp | CTGCAAGGGTCACCTCCTGACTTTGGTGTGGCTGTAGCTCTACTGCGGCGGACCCGCAGTGGCCAGGCGTaGGCTGCACTTGTCCTGGGG | + |
Preference number: 4 (lower is better) Translates to: LQGSPPDFGVAVALLRRTRSGQA*AALVLG Trigger: CCCCAGGACAAGTGCAGCGCACGCCTGGCCACTGCG...GGTCCGCCGCAGTAGAGCTACAGCCACACCAAAGTCAGGAGGTGACCCTTGCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS-3UTR CCA 90 bp | CTCCTGCAAGGGTCACCTCCTGACTTTGGTGTGGCTGTAGCTCTACTGCGGCGGCCAAGGTCTGGGCCTTaGAGAACAGCACCCGCCGCT | + |
Preference number: 4 (lower is better) Translates to: LLQGSPPDFGVAVALLRRPRSGP*RTAPAA Trigger: AGCGGCGGGTGCTGTTCTCCAAGGCCCAGACCTTGG...CCGCCGCAGTAGAGCTACAGCCACACCAAAGTCAGGAGGTGACCCTTGCAGGAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS-3UTR TCA 90 bp | GAAATAAAATCTTGCTCTGGGACTGGCGCCCGGGCAACCATTCCGAGTCTTGGAGGAGGCTGCGCACCGTaGAGCCGAGGCGTCCAGAGG | + |
Preference number: 4 (lower is better) Translates to: EIKSCSGTGARATIPSLGGGCAP*SRGVQR Trigger: CCTCTGGACGCCTCGGCTTCACGGTGCGCAGCCTCC...TCCAAGACTCGGAATGGTTGCCCGGGCGCCAGTCCCAGAGCAAGATTTTATTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS-3UTR GCA 90 bp | CTGCAAGGGTCACCTCCTGACTTTGGTGTGGCTGTAGCTCTACTGCGGCGGACCCTGAGCGAAGCCAGCTaGGACGAGTCTGCAGGGCTT | + |
Preference number: 4 (lower is better) Translates to: LQGSPPDFGVAVALLRRTLSEAS*DESAGL Trigger: AAGCCCTGCAGACTCGTCGCAGCTGGCTTCGCTCAG...GGTCCGCCGCAGTAGAGCTACAGCCACACCAAAGTCAGGAGGTGACCCTTGCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS-3UTR GCA 90 bp | TGTGTGTGTGTTTGCCGGTTAGGGCAATCCAGGGACCCAGGACTCAAGAAGGGCCAGCTGCGACGAGTCTaGAGGGCTTGTCTCCAGGCC | + |
Preference number: 4 (lower is better) Translates to: CVCVCRLGQSRDPGLKKGQLRRV*RACLQA Trigger: GGCCTGGAGACAAGCCCTGCAGACTCGTCGCAGCTG...GCCCTTCTTGAGTCCTGGGTCCCTGGATTGCCCTAACCGGCAAACACACACACA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS TCA 90 bp | GCCGCTTCCTCCTCTTCTCCGGGTCGGAGCCGGGGGACTCCCGCCTaGGCGAAGCCAGCTGCGACGAGTCTGCAGGGCTTGTCTCCAGGC | + |
Preference number: 5 (lower is better) Translates to: AASSSSPGRSRGTPA*AKPAATSLQGLSPG Trigger: GCCTGGAGACAAGCCCTGCAGACTCGTCGCAGCTGGCTTCGCTCAGGCGGGAGTCCCCCGGCTCCGACCCGGAGAAGAGGAGGAAGCGGC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS TCA 90 bp | GCAGAGGTCCCCTCACCTCTGCCGTTGTTGCTCGGTGGCCGGTCGTaGACCAGCACGGGTACCACTACGCGGCGCAGCAGGCCGGGAGCG | + |
Preference number: 5 (lower is better) Translates to: AEVPSPLPLLLGGRS*TSTGTTTRRSRPGA Trigger: CGCTCCCGGCCTGCTGCGCCGCGTAGTGGTACCCGTGCTGGTTCACGACCGGCCACCGAGCAACAACGGCAGAGGTGAGGGGACCTCTGC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS GCA 90 bp | TTCTCCGGGTCGGAGCCGGGGGACTCCCGCCTGAGCGAAGCCAGCTaGGACGAGTCTGCAGGGCTTGTCTCCAGGCCGCTCTCGTCCGAG | + |
Preference number: 5 (lower is better) Translates to: FSGSEPGDSRLSEAS*DESAGLVSRPLSSE Trigger: CTCGGACGAGAGCGGCCTGGAGACAAGCCCTGCAGACTCGTCGCAGCTGGCTTCGCTCAGGCGGGAGTCCCCCGGCTCCGACCCGGAGAA 70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS GCA 90 bp | AGGCGGTGTAGCCTGGCACCGGACACGCAGTGGCCAGGCGTGCGCTaGACTTGTCCTGGGGCACCGCAGAGGTCCCCTCACCTCTGCCGT | + |
Preference number: 5 (lower is better) Translates to: RRCSLAPDTQWPGVR*TCPGAPQRSPHLCR Trigger: ACGGCAGAGGTGAGGGGACCTCTGCGGTGCCCCAGGACAAGTGCAGCGCACGCCTGGCCACTGCGTGTCCGGTGCCAGGCTACACCGCCT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS CCA 90 bp | TGGGAAGAGGCCAAGCGCCGAGCCCGGTCCGAAGGCGGTGTAGCCTaGCACCGGACACGCAGTGGCCAGGCGTGCGCTGCACTTGTCCTG | + |
Preference number: 5 (lower is better) Translates to: WEEAKRRARSEGGVA*HRTRSGQACAALVL Trigger: CAGGACAAGTGCAGCGCACGCCTGGCCACTGCGTGTCCGGTGCCAGGCTACACCGCCTTCGGACCGGGCTCGGCGCTTGGCCTCTTCCCA 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS GCA 90 bp | GGAGCCGGGGGACTCCCGCCTGAGCGAAGCCAGCTGCGACGAGTCTaGAGGGCTTGTCTCCAGGCCGCTCTCGTCCGAGGACAGGTAGTG | + |
Preference number: 5 (lower is better) Translates to: GAGGLPPERSQLRRV*RACLQAALVRGQVV Trigger: CACTACCTGTCCTCGGACGAGAGCGGCCTGGAGACAAGCCCTGCAGACTCGTCGCAGCTGGCTTCGCTCAGGCGGGAGTCCCCCGGCTCC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS GCA 90 bp | TCCGAAGGCGGTGTAGCCTGGCACCGGACACGCAGTGGCCAGGCGTaGGCTGCACTTGTCCTGGGGCACCGCAGAGGTCCCCTCACCTCT | + |
Preference number: 5 (lower is better) Translates to: SEGGVAWHRTRSGQA*AALVLGHRRGPLTS Trigger: AGAGGTGAGGGGACCTCTGCGGTGCCCCAGGACAAGTGCAGCGCACGCCTGGCCACTGCGTGTCCGGTGCCAGGCTACACCGCCTTCGGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS CCA 90 bp | CCTGGCACCGGACACGCAGTGGCCAGGCGTGCGCTGCACTTGTCCTaGGGCACCGCAGAGGTCCCCTCACCTCTGCCGTTGTTGCTCGGT | + |
Preference number: 5 (lower is better) Translates to: PGTGHAVARRALHLS*GTAEVPSPLPLLLG Trigger: ACCGAGCAACAACGGCAGAGGTGAGGGGACCTCTGCGGTGCCCCAGGACAAGTGCAGCGCACGCCTGGCCACTGCGTGTCCGGTGCCAGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS TCA 90 bp | TACCACTACGCGGCGCAGCAGGCCGGGAGCGGCGTGCAGATCAGATaGTGCTGCCATATCCGAAGGCTCTGTGATCCCAGGCGCTCGCCC | + |
Preference number: 5 (lower is better) Translates to: YHYAAQQAGSGVQIR*CCHIRRLCDPRRSP Trigger: GGGCGAGCGCCTGGGATCACAGAGCCTTCGGATATGGCAGCATCATCTGATCTGCACGCCGCTCCCGGCCTGCTGCGCCGCGTAGTGGTA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS GCA 90 bp | CAGGGCTTGTCTCCAGGCCGCTCTCGTCCGAGGACAGGTAGTGGCTaGACTCCGACTCCAGCCAGGCAGCAGTCTGTGGAACGCACGTCT | + |
Preference number: 5 (lower is better) Translates to: QGLSPGRSRPRTGSG*TPTPARQQSVERTS Trigger: AGACGTGCGTTCCACAGACTGCTGCCTGGCTGGAGTCGGAGTGCAGCCACTACCTGTCCTCGGACGAGAGCGGCCTGGAGACAAGCCCTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS GCA 90 bp | ACCAGCACGGGTACCACTACGCGGCGCAGCAGGCCGGGAGCGGCGTaGAGATCAGATGATGCTGCCATATCCGAAGGCTCTGTGATCCCA | + |
Preference number: 5 (lower is better) Translates to: TSTGTTTRRSRPGAA*RSDDAAISEGSVIP Trigger: TGGGATCACAGAGCCTTCGGATATGGCAGCATCATCTGATCTGCACGCCGCTCCCGGCCTGCTGCGCCGCGTAGTGGTACCCGTGCTGGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS CCA 90 bp | GGACAGGTAGTGGCTGCACTCCGACTCCAGCCAGGCAGCAGTCTGTaGAACGCACGTCTGTTGCTCGCGCCTCACCCTAGGCTTCGCATC | + |
Preference number: 5 (lower is better) Translates to: GQVVAALRLQPGSSL*NARLLLAPHPRLRI Trigger: GATGCGAAGCCTAGGGTGAGGCGCGAGCAACAGACGTGCGTTCCACAGACTGCTGCCTGGCTGGAGTCGGAGTGCAGCCACTACCTGTCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS-3UTR CAA 90 bp | TGTGTGTGTGTTTGCCGGTTAGGGCAATCCAGGGACCCAGGACTCAAGAAGGGCTCCAAGGTCTGGGCCTaGGAGAACAGCACCCGCCGC | + |
Preference number: 5 (lower is better) Translates to: CVCVCRLGQSRDPGLKKGSKVWA*ENSTRR Trigger: GCGGCGGGTGCTGTTCTCCAAGGCCCAGACCTTGGA...GCCCTTCTTGAGTCCTGGGTCCCTGGATTGCCCTAACCGGCAAACACACACACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS TCA 90 bp | GAGCGGCGTGCAGATCAGATGATGCTGCCATATCCGAAGGCTCTGTaGTCCCAGGCGCTCGCCCTCGCTTCAGCTTGTAGCGGTGGTTCT | + |
Preference number: 5 (lower is better) Translates to: ERRADQMMLPYPKAL*SQALALASACSGGS Trigger: AGAACCACCGCTACAAGCTGAAGCGAGGGCGAGCGCCTGGGATCACAGAGCCTTCGGATATGGCAGCATCATCTGATCTGCACGCCGCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS-3UTR CAA 90 bp | TGTGTGTGTGTTTGCCGGTTAGGGCAATCCAGGGACCCAGGACTCAAGAAGGGCACGAGTCTGCAGGGCTaGTCTCCAGGCCGCTCTCGT | + |
Preference number: 5 (lower is better) Translates to: CVCVCRLGQSRDPGLKKGTSLQG*SPGRSR Trigger: ACGAGAGCGGCCTGGAGACAAGCCCTGCAGACTCGT...GCCCTTCTTGAGTCCTGGGTCCCTGGATTGCCCTAACCGGCAAACACACACACA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS CCA 72 bp | GCCAAGCGCCGAGCCCGGTCCGAAGGCGGTGTAGCCTaGCACCGGACACGCAGTGGCCAGGCGTGCGCTGCA | + |
Preference number: 6 (lower is better) Translates to: AKRRARSEGGVA*HRTRSGQACAA Trigger: TGCAGCGCACGCCTGGCCACTGCGTGTCCGGTGCCAGGCTACACCGCCTTCGGACCGGGCTCGGCGCTTGGC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS GCA 72 bp | AGCCTGGCACCGGACACGCAGTGGCCAGGCGTGCGCTaGACTTGTCCTGGGGCACCGCAGAGGTCCCCTCAC | + |
Preference number: 6 (lower is better) Translates to: SLAPDTQWPGVR*TCPGAPQRSPH Trigger: GTGAGGGGACCTCTGCGGTGCCCCAGGACAAGTGCAGCGCACGCCTGGCCACTGCGTGTCCGGTGCCAGGCT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS GCA 72 bp | GGTGTAGCCTGGCACCGGACACGCAGTGGCCAGGCGTaGGCTGCACTTGTCCTGGGGCACCGCAGAGGTCCC | + |
Preference number: 6 (lower is better) Translates to: GVAWHRTRSGQA*AALVLGHRRGP Trigger: GGGACCTCTGCGGTGCCCCAGGACAAGTGCAGCGCACGCCTGGCCACTGCGTGTCCGGTGCCAGGCTACACC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS CAA 72 bp | GGCACCGGACACGCAGTGGCCAGGCGTGCGCTGCACTaGTCCTGGGGCACCGCAGAGGTCCCCTCACCTCTG | + |
Preference number: 6 (lower is better) Translates to: GTGHAVARRALH*SWGTAEVPSPL Trigger: CAGAGGTGAGGGGACCTCTGCGGTGCCCCAGGACAAGTGCAGCGCACGCCTGGCCACTGCGTGTCCGGTGCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS TCA 72 bp | TCCTCTTCTCCGGGTCGGAGCCGGGGGACTCCCGCCTaGGCGAAGCCAGCTGCGACGAGTCTGCAGGGCTTG | + |
Preference number: 6 (lower is better) Translates to: SSSPGRSRGTPA*AKPAATSLQGL Trigger: CAAGCCCTGCAGACTCGTCGCAGCTGGCTTCGCTCAGGCGGGAGTCCCCCGGCTCCGACCCGGAGAAGAGGA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS GCA 72 bp | GGACTCCCGCCTGAGCGAAGCCAGCTGCGACGAGTCTaGAGGGCTTGTCTCCAGGCCGCTCTCGTCCGAGGA | + |
Preference number: 6 (lower is better) Translates to: GLPPERSQLRRV*RACLQAALVRG Trigger: TCCTCGGACGAGAGCGGCCTGGAGACAAGCCCTGCAGACTCGTCGCAGCTGGCTTCGCTCAGGCGGGAGTCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS TCA 72 bp | GCGGCGCAGCAGGCCGGGAGCGGCGTGCAGATCAGATaGTGCTGCCATATCCGAAGGCTCTGTGATCCCAGG | + |
Preference number: 6 (lower is better) Translates to: AAQQAGSGVQIR*CCHIRRLCDPR Trigger: CCTGGGATCACAGAGCCTTCGGATATGGCAGCATCATCTGATCTGCACGCCGCTCCCGGCCTGCTGCGCCGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS CCA 72 bp | GTGGCTGCACTCCGACTCCAGCCAGGCAGCAGTCTGTaGAACGCACGTCTGTTGCTCGCGCCTCACCCTAGG | + |
Preference number: 6 (lower is better) Translates to: VAALRLQPGSSL*NARLLLAPHPR Trigger: CCTAGGGTGAGGCGCGAGCAACAGACGTGCGTTCCACAGACTGCTGCCTGGCTGGAGTCGGAGTGCAGCCAC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS GCA 72 bp | TCTCCAGGCCGCTCTCGTCCGAGGACAGGTAGTGGCTaGACTCCGACTCCAGCCAGGCAGCAGTCTGTGGAA | + |
Preference number: 6 (lower is better) Translates to: SPGRSRPRTGSG*TPTPARQQSVE Trigger: TTCCACAGACTGCTGCCTGGCTGGAGTCGGAGTGCAGCCACTACCTGTCCTCGGACGAGAGCGGCCTGGAGA 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS GCA 72 bp | GGTACCACTACGCGGCGCAGCAGGCCGGGAGCGGCGTaGAGATCAGATGATGCTGCCATATCCGAAGGCTCT | + |
Preference number: 6 (lower is better) Translates to: GTTTRRSRPGAA*RSDDAAISEGS Trigger: AGAGCCTTCGGATATGGCAGCATCATCTGATCTGCACGCCGCTCCCGGCCTGCTGCGCCGCGTAGTGGTACC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS CAA 72 bp | CTCCAGCCAGGCAGCAGTCTGTGGAACGCACGTCTGTaGCTCGCGCCTCACCCTAGGCTTCGCATCCTGTTC | + |
Preference number: 6 (lower is better) Translates to: LQPGSSLWNARL*LAPHPRLRILF Trigger: GAACAGGATGCGAAGCCTAGGGTGAGGCGCGAGCAACAGACGTGCGTTCCACAGACTGCTGCCTGGCTGGAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS GCA 72 bp | TCCAGCCAGGCAGCAGTCTGTGGAACGCACGTCTGTTaGTCGCGCCTCACCCTAGGCTTCGCATCCTGTTCA | + |
Preference number: 6 (lower is better) Translates to: SSQAAVCGTHVC*SRLTLGFASCS Trigger: TGAACAGGATGCGAAGCCTAGGGTGAGGCGCGAGCAACAGACGTGCGTTCCACAGACTGCTGCCTGGCTGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |
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CDS TCA 72 bp | GCAGATCAGATGATGCTGCCATATCCGAAGGCTCTGTaGTCCCAGGCGCTCGCCCTCGCTTCAGCTTGTAGC | + |
Preference number: 6 (lower is better) Translates to: ADQMMLPYPKAL*SQALALASACS Trigger: GCTACAAGCTGAAGCGAGGGCGAGCGCCTGGGATCACAGAGCCTTCGGATATGGCAGCATCATCTGATCTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000072631.6 |