RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NKX2-6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044186

Ensembl transcript IDs: ENSMUST00000062437.10

Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp ATTACTTTTCTAGGCCAGAAGGGCAAGGGAATAAGATTTATTAATTTCTTGTGCCCGAGATCAGTAAGGTaGGCAGTGCTTTCCAGCCCC +
Preference number: 2 (lower is better)
Translates to: ITFLGQKGKGIRFINFLCPRSVR*AVLSSP
Trigger: GGGGCTGGAAAGCACTGCCCACCTTACTGATCTCGG...GCACAAGAAATTAATAAATCTTATTCCCTTGCCCTTCTGGCCTAGAAAAGTAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062437.10
3UTR CCA 72 bp GTGCTAGTCTTTCTGCACAGCATCTACGTGGCTACGTaGTTACACTTCCGAGGGAAAGAATGTTCTCAAGGT +
Preference number: 3 (lower is better)
Translates to: VLVFLHSIYVAT*LHFRGKECSQG
Trigger: ACCTTGAGAACATTCTTTCCCTCGGAAGTGTAACCACGTAGCCACGTAGATGCTGTGCAGAAAGACTAGCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062437.10
CDS-3UTR TCA 90 bp CCGAGATCAGTAAGGTGGGCAGTGCTTTCCAGCCCCGCGCCCACCAGCAGGAAGTTTGGCCACCTGGGCTaGAGCCAGAGCTGGCCAGTG +
Preference number: 4 (lower is better)
Translates to: PRSVRWAVLSSPAPTSRKFGHLG*SQSWPV
Trigger: CACTGGCCAGCTCTGGCTTCAGCCCAGGTGGCCAAA...CTTCCTGCTGGTGGGCGCGGGGCTGGAAAGCACTGCCCACCTTACTGATCTCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062437.10
CDS-3UTR CCA 90 bp GAGATCAGTAAGGTGGGCAGTGCTTTCCAGCCCCGCGCCCACCAGCAGGAAGGGCGCACTTTGGCCACCTaGGCTGAAGCCAGAGCTGGC +
Preference number: 4 (lower is better)
Translates to: EISKVGSAFQPRAHQQEGRTLAT*AEARAG
Trigger: GCCAGCTCTGGCTTCAGCCCAGGTGGCCAAAGTGCG...CCCTTCCTGCTGGTGGGCGCGGGGCTGGAAAGCACTGCCCACCTTACTGATCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062437.10
CDS-3UTR CCA 90 bp CAGTTCAGTTCCGAGATCAGTAAGGTGGGCAGTGCTTTCCAGCCCCGCGCCCACTCCAGGGCCAGCACTTaGGCCTGGGAGAATAGCACG +
Preference number: 4 (lower is better)
Translates to: QFSSEISKVGSAFQPRAHSRAST*AWENST
Trigger: CGTGCTATTCTCCCAGGCCCAAGTGCTGGCCCTGGA...GTGGGCGCGGGGCTGGAAAGCACTGCCCACCTTACTGATCTCGGAACTGAACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062437.10
CDS-3UTR CCA 90 bp ATCAGTAAGGTGGGCAGTGCTTTCCAGCCCCGCGCCCACCAGCAGGAAGGGGAGCCTGGCGCTGACTCTTaGACTTGTAGCGCCGGTTTT +
Preference number: 4 (lower is better)
Translates to: ISKVGSAFQPRAHQQEGEPGADS*TCSAGF
Trigger: AAAACCGGCGCTACAAGTCCAAGAGTCAGCGCCAGG...CTCCCCTTCCTGCTGGTGGGCGCGGGGCTGGAAAGCACTGCCCACCTTACTGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062437.10
CDS-3UTR GCA 90 bp CGTGGCTACGTGGTTACACTTCCGAGGGAAAGAATGTTCTCAAGGTCTTCAGGGAGCGCGCTGGCCAAGTaGTCACGCTCGGGCGCAGTC +
Preference number: 4 (lower is better)
Translates to: RGYVVTLPRERMFSRSSGSALAK*SRSGAV
Trigger: GACTGCGCCCGAGCGTGAGCACTTGGCCAGCGCGCT...CCCTGAAGACCTTGAGAACATTCTTTCCCTCGGAAGTGTAACCACGTAGCCACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062437.10
CDS-3UTR CCA 90 bp TTATTAATTTCTTGTGCTAGTCTTTCTGCACAGCATCTACGTGGCTACGTGGTTGGCCGGCGCTGGCGCTaGTGCAGCGGCTCGCATAGC +
Preference number: 4 (lower is better)
Translates to: LLISCASLSAQHLRGYVVGRRWR*CSGSHS
Trigger: GCTATGCGAGCCGCTGCACCAGCGCCAGCGCCGGCC...AACCACGTAGCCACGTAGATGCTGTGCAGAAAGACTAGCACAAGAAATTAATAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062437.10
CDS-3UTR GCA 90 bp GTGGTTACACTTCCGAGGGAAAGAATGTTCTCAAGGTCTTCAGGGGCCGCTCCTAAAAGGGACTGCTTGTaGCCTGTCGCTGCTCTCAAA +
Preference number: 4 (lower is better)
Translates to: VVTLPRERMFSRSSGAAPKRDCL*PVAALK
Trigger: TTTGAGAGCAGCGACAGGGCACAAGCAGTCCCTTTT...AGGAGCGGCCCCTGAAGACCTTGAGAACATTCTTTCCCTCGGAAGTGTAACCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062437.10
CDS-3UTR GCA 90 bp TCTACGTGGCTACGTGGTTACACTTCCGAGGGAAAGAATGTTCTCAAGGTCTTCCAAGTCGGGAGATCGTaGCCGGAGGAGTTTGTGGCT +
Preference number: 4 (lower is better)
Translates to: STWLRGYTSEGKNVLKVFQVGRS*PEEFVA
Trigger: AGCCACAAACTCCTCCGGGCACGATCTCCCGACTTG...GAAGACCTTGAGAACATTCTTTCCCTCGGAAGTGTAACCACGTAGCCACGTAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062437.10
CDS-3UTR CCA 90 bp GTGGTTACACTTCCGAGGGAAAGAATGTTCTCAAGGTCTTCAGGGGCCGCTCCTATTGTGACAGGGTCTTaGAATCCTTCTGTTGGCACT +
Preference number: 4 (lower is better)
Translates to: VVTLPRERMFSRSSGAAPIVTGS*NPSVGT
Trigger: AGTGCCAACAGAAGGATTCCAAGACCCTGTCACAAT...AGGAGCGGCCCCTGAAGACCTTGAGAACATTCTTTCCCTCGGAAGTGTAACCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062437.10
CDS-3UTR CCA 90 bp TTATTAATTTCTTGTGCTAGTCTTTCTGCACAGCATCTACGTGGCTACGTGGTTCTACCGAGAAAGGGGTaGAGGCCACAGGACTCGACA +
Preference number: 4 (lower is better)
Translates to: LLISCASLSAQHLRGYVVLPRKG*RPQDST
Trigger: TGTCGAGTCCTGTGGCCTCCACCCCTTTCTCGGTAG...AACCACGTAGCCACGTAGATGCTGTGCAGAAAGACTAGCACAAGAAATTAATAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062437.10
CDS-3UTR CCA 90 bp ATTACTTTTCTAGGCCAGAAGGGCAAGGGAATAAGATTTATTAATTTCTTGTGCGTCCAGTACCAGTACTaGCACTGCTACCCGGCGCGG +
Preference number: 4 (lower is better)
Translates to: ITFLGQKGKGIRFINFLCVQYQY*HCYPAR
Trigger: CCGCGCCGGGTAGCAGTGCCAGTACTGGTACTGGAC...GCACAAGAAATTAATAAATCTTATTCCCTTGCCCTTCTGGCCTAGAAAAGTAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062437.10
CDS CCA 90 bp CGGAGCCGCACTTTGGCCACCTGGGCTGAAGCCAGAGCTGGCCAGTaGTGTGAGCGGCCCGGGGCCGGCGCTGGCGCTGGTGCAGCGGCT +
Preference number: 5 (lower is better)
Translates to: RSRTLATWAEARAGQ*CERPGAGAGAGAAA
Trigger: AGCCGCTGCACCAGCGCCAGCGCCGGCCCCGGGCCGCTCACACCACTGGCCAGCTCTGGCTTCAGCCCAGGTGGCCAAAGTGCGGCTCCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062437.10
CDS GCA 90 bp TGTAGGGACCCAGGAATGCGGCTACGTCGGGATCCAGGCAGGGCTTaGCGTCCAGTACCAGTACTGGCACTGCTACCCGGCGCGGTGCTA +
Preference number: 5 (lower is better)
Translates to: CRDPGMRLRRDPGRA*RPVPVLALLPGAVL
Trigger: TAGCACCGCGCCGGGTAGCAGTGCCAGTACTGGTACTGGACGGCAAGCCCTGCCTGGATCCCGACGTAGCCGCATTCCTGGGTCCCTACA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062437.10
CDS-3UTR CAA 90 bp TCAGTTCCGAGATCAGTAAGGTGGGCAGTGCTTTCCAGCCCCGCGCCCACCAGCGGATCCAGGCAGGGCTaGCCGTCCAGTACCAGTACT +
Preference number: 5 (lower is better)
Translates to: SVPRSVRWAVLSSPAPTSGSRQG*PSSTST
Trigger: AGTACTGGTACTGGACGGCAAGCCCTGCCTGGATCC...GCTGGTGGGCGCGGGGCTGGAAAGCACTGCCCACCTTACTGATCTCGGAACTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062437.10
CDS-3UTR CAA 90 bp TCTACGTGGCTACGTGGTTACACTTCCGAGGGAAAGAATGTTCTCAAGGTCTTCCATTGTGACAGGGTCTaGGAATCCTTCTGTTGGCAC +
Preference number: 5 (lower is better)
Translates to: STWLRGYTSEGKNVLKVFHCDRV*ESFCWH
Trigger: GTGCCAACAGAAGGATTCCAAGACCCTGTCACAATG...GAAGACCTTGAGAACATTCTTTCCCTCGGAAGTGTAACCACGTAGCCACGTAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062437.10
CDS CAA 90 bp GACTCCCTGAGGCGTAGCGGGCAGATGGCCCTGCGGAGCCGCACTTaGGCCACCTGGGCTGAAGCCAGAGCTGGCCAGTGGTGTGAGCGG +
Preference number: 6 (lower is better)
Translates to: DSLRRSGQMALRSRT*ATWAEARAGQWCER
Trigger: CCGCTCACACCACTGGCCAGCTCTGGCTTCAGCCCAGGTGGCCAAAGTGCGGCTCCGCAGGGCCATCTGCCCGCTACGCCTCAGGGAGTC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062437.10
CDS CCA 72 bp GGCGTAGCGGGCAGATGGCCCTGCGGAGCCGCACTTTaGCCACCTGGGCTGAAGCCAGAGCTGGCCAGTGGT +
Preference number: 6 (lower is better)
Translates to: GVAGRWPCGAAL*PPGLKPELASG
Trigger: ACCACTGGCCAGCTCTGGCTTCAGCCCAGGTGGCCAAAGTGCGGCTCCGCAGGGCCATCTGCCCGCTACGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062437.10
CDS CAA 72 bp AGGCGTAGCGGGCAGATGGCCCTGCGGAGCCGCACTTaGGCCACCTGGGCTGAAGCCAGAGCTGGCCAGTGG +
Preference number: 6 (lower is better)
Translates to: RRSGQMALRSRT*ATWAEARAGQW
Trigger: CCACTGGCCAGCTCTGGCTTCAGCCCAGGTGGCCAAAGTGCGGCTCCGCAGGGCCATCTGCCCGCTACGCCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062437.10
CDS GCA 72 bp CCAGGAATGCGGCTACGTCGGGATCCAGGCAGGGCTTaGCGTCCAGTACCAGTACTGGCACTGCTACCCGGC +
Preference number: 6 (lower is better)
Translates to: PGMRLRRDPGRA*RPVPVLALLPG
Trigger: GCCGGGTAGCAGTGCCAGTACTGGTACTGGACGGCAAGCCCTGCCTGGATCCCGACGTAGCCGCATTCCTGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062437.10
CDS CAA 72 bp CCCAGGAATGCGGCTACGTCGGGATCCAGGCAGGGCTaGCCGTCCAGTACCAGTACTGGCACTGCTACCCGG +
Preference number: 6 (lower is better)
Translates to: PRNAATSGSRQG*PSSTSTGTATR
Trigger: CCGGGTAGCAGTGCCAGTACTGGTACTGGACGGCAAGCCCTGCCTGGATCCCGACGTAGCCGCATTCCTGGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062437.10
CDS GCA 72 bp CTCCAGGACTGTCTCCCAGGTGCACCGAAAAGGGACTaGTTGTGCCCTGTCGCTGCTCTCAAACCATCCGGA +
Preference number: 6 (lower is better)
Translates to: LQDCLPGAPKRD*LCPVAALKPSG
Trigger: TCCGGATGGTTTGAGAGCAGCGACAGGGCACAAGCAGTCCCTTTTCGGTGCACCTGGGAGACAGTCCTGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062437.10
CDS CAA 72 bp ACTGGGTTCCTATGCAACTCCCATTGTGACAGGGTCTaGGAATCCTTCTGTTGGCACTCCAGCCTGAGAATG +
Preference number: 6 (lower is better)
Translates to: TGFLCNSHCDRV*ESFCWHSSLRM
Trigger: CATTCTCAGGCTGGAGTGCCAACAGAAGGATTCCAAGACCCTGTCACAATGGGAGTTGCATAGGAACCCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062437.10