Pregenerated sensors for NKX2-4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054160Ensembl transcript IDs: ENSMUST00000067020.3
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TACCCAAATGGCAGTTATTCCTCAGCAATCACGTTGCTGTGTATATaGTCCACTTTGGGCTACAATTCAATTTACTTTCAATCAAGCATT | + |
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Preference number: 1 (lower is better) Translates to: YPNGSYSSAITLLCI*STLGYNSIYFQSSI Trigger: AATGCTTGATTGAAAGTAAATTGAATTGTAGCCCAAAGTGGATCATATACACAGCAACGTGATTGCTGAGGAATAACTGCCATTTGGGTA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| 3UTR GCA 90 bp | TTTCTCTATTTTACCCAAATGGCAGTTATTCCTCAGCAATCACGTTaGTGTGTATATGATCCACTTTGGGCTACAATTCAATTTACTTTC | + |
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Preference number: 1 (lower is better) Translates to: FLYFTQMAVIPQQSR*CVYDPLWATIQFTF Trigger: GAAAGTAAATTGAATTGTAGCCCAAAGTGGATCATATACACAGCAACGTGATTGCTGAGGAATAACTGCCATTTGGGTAAAATAGAGAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| 3UTR CAA 90 bp | CCATGCACTAAAGGGTCAGCATCTGTACATTTCCCCCATCCGTTCTaGCAGTTTCTTGGCGGATCCTGCGAGTCGCAGGCAGACCCTCGG | + |
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Preference number: 2 (lower is better) Translates to: PCTKGSASVHFPHPF*QFLGGSCESQADPR Trigger: CCGAGGGTCTGCCTGCGACTCGCAGGATCCGCCAAGAAACTGCAAGAACGGATGGGGGAAATGTACAGATGCTGACCCTTTAGTGCATGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| 3UTR CAA 90 bp | TACAAACACCAACAAAGTTTCCGACTTCTAAAACTCTTGAGAGCTTaGGTTAGGAACGTGGTGAATGCGTATTCCGTCAGTCAGTTCTTC | + |
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Preference number: 2 (lower is better) Translates to: YKHQQSFRLLKLLRA*VRNVVNAYSVSQFF Trigger: GAAGAACTGACTGACGGAATACGCATTCACCACGTTCCTAACCAAAGCTCTCAAGAGTTTTAGAAGTCGGAAACTTTGTTGGTGTTTGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| 3UTR CCA 72 bp | ATCTGTACATTTCCCCCATCCGTTCTTGCAGTTTCTTaGCGGATCCTGCGAGTCGCAGGCAGACCCTCGGGG | + |
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Preference number: 3 (lower is better) Translates to: ICTFPPSVLAVS*RILRVAGRPSG Trigger: CCCCGAGGGTCTGCCTGCGACTCGCAGGATCCGCCAAGAAACTGCAAGAACGGATGGGGGAAATGTACAGAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| 3UTR-3UTR CAA 90 bp | CCCAGTAAAGAGGTTCAGAGCAGCCTGACCCTCTCCGTGACTCATTCGTTCTTATTCCCCCATCCGTTCTaGCAGTTTCTTGGCGGATCC | + |
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Preference number: 3 (lower is better) Translates to: PSKEVQSSLTLSVTHSFLFPHPF*QFLGGS Trigger: GGATCCGCCAAGAAACTGCAAGAACGGATGGGGGAA...TAAGAACGAATGAGTCACGGAGAGGGTCAGGCTGCTCTGAACCTCTTTACTGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| 3UTR-3UTR CAA 90 bp | AGCATTAACGAAATTGCACTTAGGGGAGGGGCTTTGCAAATTAATCTCCCAAAACGACTTCTAAAACTCTaGAGAGCTTTGGTTAGGAAC | + |
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Preference number: 3 (lower is better) Translates to: SINEIALRGGALQINLPKRLLKL*RALVRN Trigger: GTTCCTAACCAAAGCTCTCAAGAGTTTTAGAAGTCG...TTTTGGGAGATTAATTTGCAAAGCCCCTCCCCTAAGTGCAATTTCGTTAATGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| 3UTR TCA 72 bp | GGCAGTTATTCCTCAGCAATCACGTTGCTGTGTATATaGTCCACTTTGGGCTACAATTCAATTTACTTTCAA | + |
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Preference number: 3 (lower is better) Translates to: GSYSSAITLLCI*STLGYNSIYFQ Trigger: TTGAAAGTAAATTGAATTGTAGCCCAAAGTGGATCATATACACAGCAACGTGATTGCTGAGGAATAACTGCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| 3UTR CCA 72 bp | CCTCAGCAATCACGTTGCTGTGTATATGATCCACTTTaGGCTACAATTCAATTTACTTTCAATCAAGCATTA | + |
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Preference number: 3 (lower is better) Translates to: PQQSRCCVYDPL*ATIQFTFNQAL Trigger: TAATGCTTGATTGAAAGTAAATTGAATTGTAGCCCAAAGTGGATCATATACACAGCAACGTGATTGCTGAGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS-3UTR CCA 90 bp | CCCACCCCCAGTAAAGAGGTTCAGAGCAGCCTGACCCTCTCCGTGACTCATTCGTGTCCGGCCATGGCGTaGGGCGGCTGCATGCCCGCC | + |
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Preference number: 4 (lower is better) Translates to: PTPSKEVQSSLTLSVTHSCPAMA*GGCMPA Trigger: GGCGGGCATGCAGCCGCCCCACGCCATGGCCGGACA...CGAATGAGTCACGGAGAGGGTCAGGCTGCTCTGAACCTCTTTACTGGGGGTGGG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS-3UTR GCA 90 bp | CCCACCCCCAGTAAAGAGGTTCAGAGCAGCCTGACCCTCTCCGTGACTCATTCGGCGCTGTGCGGGAACTaGGAGACGCCGGGAGGCATG | + |
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Preference number: 4 (lower is better) Translates to: PTPSKEVQSSLTLSVTHSALCGN*ETPGGM Trigger: CATGCCTCCCGGCGTCTCGCAGTTCCCGCACAGCGC...CGAATGAGTCACGGAGAGGGTCAGGCTGCTCTGAACCTCTTTACTGGGGGTGGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS-3UTR GCA 90 bp | TCTGTACATTTCCCCCATCCGTTCTTGCAGTTTCTTGGCGGATCCTGCGAGTCGGGCCGCGTGCAGCGGTaGCAGCGACTTGGCGGCGTC | + |
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Preference number: 4 (lower is better) Translates to: SVHFPHPFLQFLGGSCESGRVQR*QRLGGV Trigger: GACGCCGCCAAGTCGCTGGCACCGCTGCACGCGGCC...CGACTCGCAGGATCCGCCAAGAAACTGCAAGAACGGATGGGGGAAATGTACAGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS-3UTR CCA 90 bp | TCTGTACATTTCCCCCATCCGTTCTTGCAGTTTCTTGGCGGATCCTGCGAGTCGGCGGTGCCAGCGACTTaGCGGCGTCCGCGATGCCGG | + |
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Preference number: 4 (lower is better) Translates to: SVHFPHPFLQFLGGSCESAVPAT*RRPRCR Trigger: CCGGCATCGCGGACGCCGCCAAGTCGCTGGCACCGC...CGACTCGCAGGATCCGCCAAGAAACTGCAAGAACGGATGGGGGAAATGTACAGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS-3UTR GCA 90 bp | GTCACATTATTCGGTCCGGGGCTGTTGCCTTCTCCCACCCCCAGTAAAGAGGTTTGCCCAGGCCGCCGTTaGAGTAGCTGCCCATGGCGC | + |
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Preference number: 4 (lower is better) Translates to: VTLFGPGLLPSPTPSKEVCPGRR*SSCPWR Trigger: GCGCCATGGGCAGCTACTGCAACGGCGGCCTGGGCA...AACCTCTTTACTGGGGGTGGGAGAAGGCAACAGCCCCGGACCGAATAATGTGAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS-3UTR CCA 90 bp | AAGGGAAATCACCACCTCAGAGTGTGGTGTCACATTATTCGGTCCGGGGCTGTTCGCCGTAGTCCCCGGTaGCCGCGTCCAGGGCCGCTA | + |
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Preference number: 4 (lower is better) Translates to: KGNHHLRVWCHIIRSGAVRRSPR*PRPGPL Trigger: TAGCGGCCCTGGACGCGGCCACCGGGGACTACGGCG...AACAGCCCCGGACCGAATAATGTGACACCACACTCTGAGGTGGTGATTTCCCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS-3UTR CCA 90 bp | CTGTACATTTCCCCCATCCGTTCTTGCAGTTTCTTGGCGGATCCTGCGAGTCGCTGCCATAGAGCAGGTTaGCGCCGAGCACGCCTCCGC | + |
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Preference number: 4 (lower is better) Translates to: LYISPIRSCSFLADPASRCHRAG*RRARLR Trigger: GCGGAGGCGTGCTCGGCGCCAACCTGCTCTATGGCA...GCGACTCGCAGGATCCGCCAAGAAACTGCAAGAACGGATGGGGGAAATGTACAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS-3UTR GCA 90 bp | ACCCCCAGTAAAGAGGTTCAGAGCAGCCTGACCCTCTCCGTGACTCATTCGTTCCCCTCCTGTTGCAGCTaGTGCGCCGCCTTGTCCTTG | + |
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Preference number: 4 (lower is better) Translates to: TPSKEVQSSLTLSVTHSFPSCCS*CAALSL Trigger: CAAGGACAAGGCGGCGCAGCAGCTGCAACAGGAGGG...GAACGAATGAGTCACGGAGAGGGTCAGGCTGCTCTGAACCTCTTTACTGGGGGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS-3UTR CCA 90 bp | AAGGGTCAGCATCTGTACATTTCCCCCATCCGTTCTTGCAGTTTCTTGGCGGATGCAGAGCGGGCGGGCTaGGCGACAGCTCCTCGAGCT | + |
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Preference number: 4 (lower is better) Translates to: KGQHLYISPIRSCSFLADAERAG*ATAPRA Trigger: AGCTCGAGGAGCTGTCGCCCAGCCCGCCCGCTCTGC...ATCCGCCAAGAAACTGCAAGAACGGATGGGGGAAATGTACAGATGCTGACCCTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS-3UTR TCA 90 bp | CCCAGTAAAGAGGTTCAGAGCAGCCTGACCCTCTCCGTGACTCATTCGTTCTTAGCGGCGCACCGTCCATaGCGCCGCCGAACTTCTTGT | + |
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Preference number: 4 (lower is better) Translates to: PSKEVQSSLTLSVTHSFLAAHRP*RRRTSC Trigger: ACAAGAAGTTCGGCGGCGTCATGGACGGTGCGCCGC...TAAGAACGAATGAGTCACGGAGAGGGTCAGGCTGCTCTGAACCTCTTTACTGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| 3UTR CAA 72 bp | CATCTGTACATTTCCCCCATCCGTTCTTGCAGTTTCTaGGCGGATCCTGCGAGTCGCAGGCAGACCCTCGGG | + |
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Preference number: 4 (lower is better) Translates to: HLYISPIRSCSF*ADPASRRQTLG Trigger: CCCGAGGGTCTGCCTGCGACTCGCAGGATCCGCCAAGAAACTGCAAGAACGGATGGGGGAAATGTACAGATG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS-3UTR CCA 90 bp | CCCAGTAAAGAGGTTCAGAGCAGCCTGACCCTCTCCGTGACTCATTCGTTCTTATGCAGTAGCTGCCCATaGCGCTGTGCGGGAACTGCG | + |
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Preference number: 4 (lower is better) Translates to: PSKEVQSSLTLSVTHSFLCSSCP*RCAGTA Trigger: CGCAGTTCCCGCACAGCGCCATGGGCAGCTACTGCA...TAAGAACGAATGAGTCACGGAGAGGGTCAGGCTGCTCTGAACCTCTTTACTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS-3UTR CCA 90 bp | GTCACATTATTCGGTCCGGGGCTGTTGCCTTCTCCCACCCCCAGTAAAGAGGTTGCGCCGCCTTGTCCTTaGCCTGCCTCTTCATCTTGT | + |
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Preference number: 4 (lower is better) Translates to: VTLFGPGLLPSPTPSKEVAPPCP*PASSSC Trigger: ACAAGATGAAGAGGCAGGCCAAGGACAAGGCGGCGC...AACCTCTTTACTGGGGGTGGGAGAAGGCAACAGCCCCGGACCGAATAATGTGAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS-3UTR GCA 90 bp | AAGGGTCAGCATCTGTACATTTCCCCCATCCGTTCTTGCAGTTTCTTGGCGGATTCCTGTTGCAGCTGCTaGGCCGCCTTGTCCTTGGCC | + |
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Preference number: 4 (lower is better) Translates to: KGQHLYISPIRSCSFLADSCCSC*AALSLA Trigger: GGCCAAGGACAAGGCGGCGCAGCAGCTGCAACAGGA...ATCCGCCAAGAAACTGCAAGAACGGATGGGGGAAATGTACAGATGCTGACCCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS-3UTR CCA 90 bp | ACCCCCAGTAAAGAGGTTCAGAGCAGCCTGACCCTCTCCGTGACTCATTCGTTCTGTAGGTCTCCTCGATaGGGCTCAGGATGTCGGAAA | + |
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Preference number: 4 (lower is better) Translates to: TPSKEVQSSLTLSVTHSFCRSPR*GSGCRK Trigger: TTTCCGACATCCTGAGCCCCATCGAGGAGACCTACA...GAACGAATGAGTCACGGAGAGGGTCAGGCTGCTCTGAACCTCTTTACTGGGGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| 3UTR CAA 72 bp | AAAGGGTCAGCATCTGTACATTTCCCCCATCCGTTCTaGCAGTTTCTTGGCGGATCCTGCGAGTCGCAGGCA | + |
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Preference number: 4 (lower is better) Translates to: KGSASVHFPHPF*QFLGGSCESQA Trigger: TGCCTGCGACTCGCAGGATCCGCCAAGAAACTGCAAGAACGGATGGGGGAAATGTACAGATGCTGACCCTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS-3UTR GCA 90 bp | TCCATTTCTCTATTTTACCCAAATGGCAGTTATTCCTCAGCAATCACGTTGCTGCTGCCCATGGCGCTGTaGGGGAACTGCGAGACGCCG | + |
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Preference number: 4 (lower is better) Translates to: SISLFYPNGSYSSAITLLLPMAL*GNCETP Trigger: CGGCGTCTCGCAGTTCCCGCACAGCGCCATGGGCAG...CAGCAACGTGATTGCTGAGGAATAACTGCCATTTGGGTAAAATAGAGAAATGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS-3UTR GCA 90 bp | CAATCAAGCATTAACGAAATTGCACTTAGGGGAGGGGCTTTGCAAATTAATCTCTGGCGGCGTCCGCGATaGCGGTCAGCGAACCCATGC | + |
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Preference number: 4 (lower is better) Translates to: QSSINEIALRGGALQINLWRRPR*RSANPC Trigger: GCATGGGTTCGCTGACCGGCATCGCGGACGCCGCCA...GAGATTAATTTGCAAAGCCCCTCCCCTAAGTGCAATTTCGTTAATGCTTGATTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS-3UTR CCA 90 bp | TTTATTCCATTTCTCTATTTTACCCAAATGGCAGTTATTCCTCAGCAATCACGTCAGCTCCTCGAGCTCTaGCGCGGGCGTCGGGGCTTG | + |
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Preference number: 4 (lower is better) Translates to: FIPFLYFTQMAVIPQQSRQLLEL*RGRRGL Trigger: CAAGCCCCGACGCCCGCGCCAGAGCTCGAGGAGCTG...ACGTGATTGCTGAGGAATAACTGCCATTTGGGTAAAATAGAGAAATGGAATAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS-3UTR GCA 90 bp | TTTATTCCATTTCTCTATTTTACCCAAATGGCAGTTATTCCTCAGCAATCACGTAGGCCGCCCTCCTGTTaGAGCTGCTGCGCCGCCTTG | + |
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Preference number: 4 (lower is better) Translates to: FIPFLYFTQMAVIPQQSRRPPSC*SCCAAL Trigger: CAAGGCGGCGCAGCAGCTGCAACAGGAGGGCGGCCT...ACGTGATTGCTGAGGAATAACTGCCATTTGGGTAAAATAGAGAAATGGAATAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS-3UTR CCA 90 bp | TGCTGTGTATATGATCCACTTTGGGCTACAATTCAATTTACTTTCAATCAAGCAGTGCCCGCGCCGTTCTaGCACGGCTTGCCGTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: CCVYDPLWATIQFTFNQAVPAPF*HGLPSF Trigger: GAAGGACGGCAAGCCGTGCCAGAACGGCGCGGGCAC...TGCTTGATTGAAAGTAAATTGAATTGTAGCCCAAAGTGGATCATATACACAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS-3UTR TCA 90 bp | TGCTGTGTATATGATCCACTTTGGGCTACAATTCAATTTACTTTCAATCAAGCACCGCCGACGGCCCCATaGACCTGGAGATTGACGAGT | + |
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Preference number: 4 (lower is better) Translates to: CCVYDPLWATIQFTFNQAPPTAP*TWRLTS Trigger: ACTCGTCAATCTCCAGGTTCATGGGGCCGTCGGCGG...TGCTTGATTGAAAGTAAATTGAATTGTAGCCCAAAGTGGATCATATACACAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| 3UTR CAA 72 bp | TACAAACACCAACAAAGTTTCCGACTTCTAAAACTCTaGAGAGCTTTGGTTAGGAACGTGGTGAATGCGTAT | + |
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Preference number: 4 (lower is better) Translates to: YKHQQSFRLLKL*RALVRNVVNAY Trigger: ATACGCATTCACCACGTTCCTAACCAAAGCTCTCAAGAGTTTTAGAAGTCGGAAACTTTGTTGGTGTTTGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS CCA 90 bp | TGGCGCTGTGCGGGAACTGCGAGACGCCGGGAGGCATGTGGTAGGTaGCGGCCGCCGCGGCCGCCGCCGCTGCCGCCGCTGCTGCCGCCG | + |
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Preference number: 5 (lower is better) Translates to: WRCAGTARRREACGR*RPPRPPPLPPLLPP Trigger: CGGCGGCAGCAGCGGCGGCAGCGGCGGCGGCCGCGGCGGCCGCCACCTACCACATGCCTCCCGGCGTCTCGCAGTTCCCGCACAGCGCCA 80% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS GCA 90 bp | GGCGACAGCTCCTCGAGCTCTGGCGCGGGCGTCGGGGCTTGCGGCTaGTGGCCTCCCTGGCCAGGCGTCGGGGTGCCCGCGCCGTTCTGG | + |
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Preference number: 5 (lower is better) Translates to: GDSSSSSGAGVGACG*WPPWPGVGVPAPFW Trigger: CCAGAACGGCGCGGGCACCCCGACGCCTGGCCAGGGAGGCCAGCAGCCGCAAGCCCCGACGCCCGCGCCAGAGCTCGAGGAGCTGTCGCC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS CCA 90 bp | TCGAGCTCTGGCGCGGGCGTCGGGGCTTGCGGCTGCTGGCCTCCCTaGCCAGGCGTCGGGGTGCCCGCGCCGTTCTGGCACGGCTTGCCG | + |
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Preference number: 5 (lower is better) Translates to: SSSGAGVGACGCWPP*PGVGVPAPFWHGLP Trigger: CGGCAAGCCGTGCCAGAACGGCGCGGGCACCCCGACGCCTGGCCAGGGAGGCCAGCAGCCGCAAGCCCCGACGCCCGCGCCAGAGCTCGA 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS GCA 90 bp | GCGCGGCCGCGTGCAGCGGTGCCAGCGACTTGGCGGCGTCCGCGATaGCGGTCAGCGAACCCATGCCGGCCACGTTCACGCCCGCCGACG | + |
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Preference number: 5 (lower is better) Translates to: ARPRAAVPATWRRPR*RSANPCRPRSRPPT Trigger: CGTCGGCGGGCGTGAACGTGGCCGGCATGGGTTCGCTGACCGGCATCGCGGACGCCGCCAAGTCGCTGGCACCGCTGCACGCGGCCGCGC 77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS CCA 90 bp | GACAGCTCCTCGAGCTCTGGCGCGGGCGTCGGGGCTTGCGGCTGCTaGCCTCCCTGGCCAGGCGTCGGGGTGCCCGCGCCGTTCTGGCAC | + |
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Preference number: 5 (lower is better) Translates to: DSSSSSGAGVGACGC*PPWPGVGVPAPFWH Trigger: GTGCCAGAACGGCGCGGGCACCCCGACGCCTGGCCAGGGAGGCCAGCAGCCGCAAGCCCCGACGCCCGCGCCAGAGCTCGAGGAGCTGTC 77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS CCA 90 bp | CATAGAGCAGGTTGGCGCCGAGCACGCCTCCGCCGTAGTCCCCGGTaGCCGCGTCCAGGGCCGCTAAGCCGCCCCCGGGACCATGCAGAG | + |
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Preference number: 5 (lower is better) Translates to: HRAGWRRARLRRSPR*PRPGPLSRPRDHAE Trigger: CTCTGCATGGTCCCGGGGGCGGCTTAGCGGCCCTGGACGCGGCCACCGGGGACTACGGCGGAGGCGTGCTCGGCGCCAACCTGCTCTATG 73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS-3UTR CAA 90 bp | CCCACCCCCAGTAAAGAGGTTCAGAGCAGCCTGACCCTCTCCGTGACTCATTCGCCGTTCTGGCACGGCTaGCCGTCCTTCACCAGCACC | + |
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Preference number: 5 (lower is better) Translates to: PTPSKEVQSSLTLSVTHSPFWHG*PSFTST Trigger: GGTGCTGGTGAAGGACGGCAAGCCGTGCCAGAACGG...CGAATGAGTCACGGAGAGGGTCAGGCTGCTCTGAACCTCTTTACTGGGGGTGGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS-3UTR CAA 90 bp | CAATCAAGCATTAACGAAATTGCACTTAGGGGAGGGGCTTTGCAAATTAATCTCCAGGCCGCCCTCCTGTaGCAGCTGCTGCGCCGCCTT | + |
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Preference number: 5 (lower is better) Translates to: QSSINEIALRGGALQINLQAALL*QLLRRL Trigger: AAGGCGGCGCAGCAGCTGCAACAGGAGGGCGGCCTG...GAGATTAATTTGCAAAGCCCCTCCCCTAAGTGCAATTTCGTTAATGCTTGATTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS-3UTR CAA 90 bp | CAATCAAGCATTAACGAAATTGCACTTAGGGGAGGGGCTTTGCAAATTAATCTCGGCAGCTCACCCATGTaGCCCAGGCCGCCGTTGCAG | + |
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Preference number: 5 (lower is better) Translates to: QSSINEIALRGGALQINLGSSPM*PRPPLQ Trigger: CTGCAACGGCGGCCTGGGCAACATGGGTGAGCTGCC...GAGATTAATTTGCAAAGCCCCTCCCCTAAGTGCAATTTCGTTAATGCTTGATTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS-3UTR CAA 90 bp | TCCATTTCTCTATTTTACCCAAATGGCAGTTATTCCTCAGCAATCACGTTGCTGAGCTGCTGCGCCGCCTaGTCCTTGGCCTGCCTCTTC | + |
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Preference number: 5 (lower is better) Translates to: SISLFYPNGSYSSAITLLSCCAA*SLACLF Trigger: GAAGAGGCAGGCCAAGGACAAGGCGGCGCAGCAGCT...CAGCAACGTGATTGCTGAGGAATAACTGCCATTTGGGTAAAATAGAGAAATGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS GCA 72 bp | TCCTCGAGCTCTGGCGCGGGCGTCGGGGCTTGCGGCTaGTGGCCTCCCTGGCCAGGCGTCGGGGTGCCCGCG | + |
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Preference number: 6 (lower is better) Translates to: SSSSGAGVGACG*WPPWPGVGVPA Trigger: CGCGGGCACCCCGACGCCTGGCCAGGGAGGCCAGCAGCCGCAAGCCCCGACGCCCGCGCCAGAGCTCGAGGA 79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS CCA 72 bp | GGTTGGCGCCGAGCACGCCTCCGCCGTAGTCCCCGGTaGCCGCGTCCAGGGCCGCTAAGCCGCCCCCGGGAC | + |
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Preference number: 6 (lower is better) Translates to: GWRRARLRRSPR*PRPGPLSRPRD Trigger: GTCCCGGGGGCGGCTTAGCGGCCCTGGACGCGGCCACCGGGGACTACGGCGGAGGCGTGCTCGGCGCCAACC 79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS CAA 90 bp | CGGCGCTTCCTTCGCGGCGCGGCCGCGTGCAGCGGTGCCAGCGACTaGGCGGCGTCCGCGATGCCGGTCAGCGAACCCATGCCGGCCACG | + |
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Preference number: 6 (lower is better) Translates to: RRFLRGAAACSGASD*AASAMPVSEPMPAT Trigger: CGTGGCCGGCATGGGTTCGCTGACCGGCATCGCGGACGCCGCCAAGTCGCTGGCACCGCTGCACGCGGCCGCGCCGCGAAGGAAGCGCCG 77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS GCA 72 bp | TCGGCGCTTCCTTCGCGGCGCGGCCGCGTGCAGCGGTaGCAGCGACTTGGCGGCGTCCGCGATGCCGGTCAG | + |
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Preference number: 6 (lower is better) Translates to: SALPSRRGRVQR*QRLGGVRDAGQ Trigger: CTGACCGGCATCGCGGACGCCGCCAAGTCGCTGGCACCGCTGCACGCGGCCGCGCCGCGAAGGAAGCGCCGA 76% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS CAA 72 bp | CTTCGCGGCGCGGCCGCGTGCAGCGGTGCCAGCGACTaGGCGGCGTCCGCGATGCCGGTCAGCGAACCCATG | + |
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Preference number: 6 (lower is better) Translates to: LRGAAACSGASD*AASAMPVSEPM Trigger: CATGGGTTCGCTGACCGGCATCGCGGACGCCGCCAAGTCGCTGGCACCGCTGCACGCGGCCGCGCCGCGAAG 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS GCA 72 bp | CTTGCGGCTGCTGGCCTCCCTGGCCAGGCGTCGGGGTaGCCGCGCCGTTCTGGCACGGCTTGCCGTCCTTCA | + |
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Preference number: 6 (lower is better) Translates to: LAAAGLPGQASG*PRRSGTACRPS Trigger: TGAAGGACGGCAAGCCGTGCCAGAACGGCGCGGGCACCCCGACGCCTGGCCAGGGAGGCCAGCAGCCGCAAG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS GCA 72 bp | CGTGCAGCGGTGCCAGCGACTTGGCGGCGTCCGCGATaGCGGTCAGCGAACCCATGCCGGCCACGTTCACGC | + |
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Preference number: 6 (lower is better) Translates to: RAAVPATWRRPR*RSANPCRPRSR Trigger: GCGTGAACGTGGCCGGCATGGGTTCGCTGACCGGCATCGCGGACGCCGCCAAGTCGCTGGCACCGCTGCACG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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| CDS TCA 72 bp | CCATGCCGGCCACGTTCACGCCCGCCGACGGCCCCATaGACCTGGAGATTGACGAGTAGCGCGGGTCCGTGT | + |
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Preference number: 6 (lower is better) Translates to: PCRPRSRPPTAP*TWRLTSSAGPC Trigger: ACACGGACCCGCGCTACTCGTCAATCTCCAGGTTCATGGGGCCGTCGGCGGGCGTGAACGTGGCCGGCATGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067020.3 |
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