RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NKX2-3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044220

Ensembl transcript IDs: ENSMUST00000057178.11

Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GACCTGGCCCTTGGGTCTGTCCTTTCTCGTGTCTCATTCCCGCGGTaGCCAGCGTGCAGTAGGACGCCCGCCGCGTGTCCCGCCCAGGCC +
Preference number: 1 (lower is better)
Translates to: DLALGSVLSRVSFPR*PACSRTPAACPAQA
Trigger: GGCCTGGGCGGGACACGCGGCGGGCGTCCTACTGCACGCTGGGCACCGCGGGAATGAGACACGAGAAAGGACAGACCCAAGGGCCAGGTC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
3UTR GCA 90 bp AACCAACCTGGCGACAACCTAGGTTGGGCGGACAGGTCTTGGATTTaGTCAGCTGCCTCCCTTCCCCCAACTTTCGATCTCACTGCGGTG +
Preference number: 1 (lower is better)
Translates to: NQPGDNLGWADRSWI*SAASLPPTFDLTAV
Trigger: CACCGCAGTGAGATCGAAAGTTGGGGGAAGGGAGGCAGCTGAGCAAATCCAAGACCTGTCCGCCCAACCTAGGTTGTCGCCAGGTTGGTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
3UTR GCA 90 bp TTGGATTTGCTCAGCTGCCTCCCTTCCCCCAACTTTCGATCTCACTaGGGTGGTGGTCTCCAAGAACAGTCCCCTGACAATCTAGGGATC +
Preference number: 1 (lower is better)
Translates to: LDLLSCLPSPNFRSH*GGGLQEQSPDNLGI
Trigger: GATCCCTAGATTGTCAGGGGACTGTTCTTGGAGACCACCACCGCAGTGAGATCGAAAGTTGGGGGAAGGGAGGCAGCTGAGCAAATCCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
3UTR CCA 90 bp AAAGGAAACCAACCTGGCGACAACCTAGGTTGGGCGGACAGGTCTTaGATTTGCTCAGCTGCCTCCCTTCCCCCAACTTTCGATCTCACT +
Preference number: 1 (lower is better)
Translates to: KGNQPGDNLGWADRS*ICSAASLPPTFDLT
Trigger: AGTGAGATCGAAAGTTGGGGGAAGGGAGGCAGCTGAGCAAATCCAAGACCTGTCCGCCCAACCTAGGTTGTCGCCAGGTTGGTTTCCTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
3UTR CCA 90 bp CAGAATACAAAACAGAAAGGAAACCAACCTGGCGACAACCTAGGTTaGGCGGACAGGTCTTGGATTTGCTCAGCTGCCTCCCTTCCCCCA +
Preference number: 1 (lower is better)
Translates to: QNTKQKGNQPGDNLG*ADRSWICSAASLPP
Trigger: TGGGGGAAGGGAGGCAGCTGAGCAAATCCAAGACCTGTCCGCCCAACCTAGGTTGTCGCCAGGTTGGTTTCCTTTCTGTTTTGTATTCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
3UTR CCA 90 bp GATAATGTGCGGAATACAGAATACAAAACAGAAAGGAAACCAACCTaGCGACAACCTAGGTTGGGCGGACAGGTCTTGGATTTGCTCAGC +
Preference number: 1 (lower is better)
Translates to: DNVRNTEYKTERKPT*RQPRLGGQVLDLLS
Trigger: GCTGAGCAAATCCAAGACCTGTCCGCCCAACCTAGGTTGTCGCCAGGTTGGTTTCCTTTCTGTTTTGTATTCTGTATTCCGCACATTATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
3UTR CAA 90 bp AGGCCACCTCTTCCCTGGCGCCTGGCCGGTGTTTCTGTCTCAGTCTaGAGGACTGGACCAGGGCATCCTTTCTCCGCTGAGTTCCATGCC +
Preference number: 2 (lower is better)
Translates to: RPPLPWRLAGVSVSV*RTGPGHPFSAEFHA
Trigger: GGCATGGAACTCAGCGGAGAAAGGATGCCCTGGTCCAGTCCTCAAGACTGAGACAGAAACACCGGCCAGGCGCCAGGGAAGAGGTGGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
3UTR CAA 90 bp AAACCAACCTGGCGACAACCTAGGTTGGGCGGACAGGTCTTGGATTaGCTCAGCTGCCTCCCTTCCCCCAACTTTCGATCTCACTGCGGT +
Preference number: 2 (lower is better)
Translates to: KPTWRQPRLGGQVLD*LSCLPSPNFRSHCG
Trigger: ACCGCAGTGAGATCGAAAGTTGGGGGAAGGGAGGCAGCTGAGCAAATCCAAGACCTGTCCGCCCAACCTAGGTTGTCGCCAGGTTGGTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
3UTR-3UTR CCA 90 bp GACAACCTAGGTTGGGCGGACAGGTCTTGGATTTGCTCAGCTGCCTCCCTTCCCCTCAGTCTTGAGGACTaGACCAGGGCATCCTTTCTC +
Preference number: 2 (lower is better)
Translates to: DNLGWADRSWICSAASLPLSLED*TRASFL
Trigger: GAGAAAGGATGCCCTGGTCCAGTCCTCAAGACTGAG...GGGAAGGGAGGCAGCTGAGCAAATCCAAGACCTGTCCGCCCAACCTAGGTTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
3UTR CAA 90 bp GAAAGGAAACCAACCTGGCGACAACCTAGGTTGGGCGGACAGGTCTaGGATTTGCTCAGCTGCCTCCCTTCCCCCAACTTTCGATCTCAC +
Preference number: 2 (lower is better)
Translates to: ERKPTWRQPRLGGQV*DLLSCLPSPNFRSH
Trigger: GTGAGATCGAAAGTTGGGGGAAGGGAGGCAGCTGAGCAAATCCAAGACCTGTCCGCCCAACCTAGGTTGTCGCCAGGTTGGTTTCCTTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
3UTR-3UTR TCA 90 bp TCTTTATTGACTCCTGTAGTGTGTGACAGCGGCTGTGTACACGGCGTGTGGATAGCATCCTTTCTCCGCTaGGTTCCATGCCCCAGGCCT +
Preference number: 2 (lower is better)
Translates to: SLLTPVVCDSGCVHGVWIASFLR*VPCPRP
Trigger: AGGCCTGGGGCATGGAACTCAGCGGAGAAAGGATGC...TATCCACACGCCGTGTACACAGCCGCTGTCACACACTACAGGAGTCAATAAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
3UTR-3UTR CCA 90 bp GGATCGGTGGAATTTCTCAAGCTAGTACCCCATTTTCCTCTCCTTCACGTTCTCAGGCCACCTCTTCCCTaGCGCCTGGCCGGTGTTTCT +
Preference number: 2 (lower is better)
Translates to: GSVEFLKLVPHFPLLHVLRPPLP*RLAGVS
Trigger: AGAAACACCGGCCAGGCGCCAGGGAAGAGGTGGCCT...GAGAACGTGAAGGAGAGGAAAATGGGGTACTAGCTTGAGAAATTCCACCGATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
3UTR CAA 90 bp ACAGAATACAAAACAGAAAGGAAACCAACCTGGCGACAACCTAGGTaGGGCGGACAGGTCTTGGATTTGCTCAGCTGCCTCCCTTCCCCC +
Preference number: 2 (lower is better)
Translates to: TEYKTERKPTWRQPR*GGQVLDLLSCLPSP
Trigger: GGGGGAAGGGAGGCAGCTGAGCAAATCCAAGACCTGTCCGCCCAACCTAGGTTGTCGCCAGGTTGGTTTCCTTTCTGTTTTGTATTCTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
3UTR-3UTR CCA 90 bp TCTTTATTGACTCCTGTAGTGTGTGACAGCGGCTGTGTACACGGCGTGTGGATATGGGCGGACAGGTCTTaGATTTGCTCAGCTGCCTCC +
Preference number: 2 (lower is better)
Translates to: SLLTPVVCDSGCVHGVWIWADRS*ICSAAS
Trigger: GGAGGCAGCTGAGCAAATCCAAGACCTGTCCGCCCA...TATCCACACGCCGTGTACACAGCCGCTGTCACACACTACAGGAGTCAATAAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
3UTR-3UTR CCA 90 bp GGGCTGCGGATCGGTGGAATTTCTCAAGCTAGTACCCCATTTTCCTCTCCTTCATTTAACGAGGGGACCTaGCCCTTGGGTCTGTCCTTT +
Preference number: 2 (lower is better)
Translates to: GLRIGGISQASTPFSSPSFNEGT*PLGLSF
Trigger: AAAGGACAGACCCAAGGGCCAGGTCCCCTCGTTAAA...TGAAGGAGAGGAAAATGGGGTACTAGCTTGAGAAATTCCACCGATCCGCAGCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
3UTR GCA 72 bp GTCCTTTCTCGTGTCTCATTCCCGCGGTGCCCAGCGTaGAGTAGGACGCCCGCCGCGTGTCCCGCCCAGGCC +
Preference number: 3 (lower is better)
Translates to: VLSRVSFPRCPA*SRTPAACPAQA
Trigger: GGCCTGGGCGGGACACGCGGCGGGCGTCCTACTGCACGCTGGGCACCGCGGGAATGAGACACGAGAAAGGAC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
3UTR GCA 72 bp CTTGGGTCTGTCCTTTCTCGTGTCTCATTCCCGCGGTaGCCAGCGTGCAGTAGGACGCCCGCCGCGTGTCCC +
Preference number: 3 (lower is better)
Translates to: LGSVLSRVSFPR*PACSRTPAACP
Trigger: GGGACACGCGGCGGGCGTCCTACTGCACGCTGGGCACCGCGGGAATGAGACACGAGAAAGGACAGACCCAAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
3UTR TCA 72 bp CCTTTCTCCGCTGAGTTCCATGCCCCAGGCCTGGAGTaGGCTGCGACCATGGCCCCTTGGAAGGAGCGATAC +
Preference number: 3 (lower is better)
Translates to: PFSAEFHAPGLE*AATMAPWKERY
Trigger: GTATCGCTCCTTCCAAGGGGCCATGGTCGCAGCTCACTCCAGGCCTGGGGCATGGAACTCAGCGGAGAAAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
3UTR TCA 72 bp TTCCCTGGCGCCTGGCCGGTGTTTCTGTCTCAGTCTTaGGGACTGGACCAGGGCATCCTTTCTCCGCTGAGT +
Preference number: 3 (lower is better)
Translates to: FPGAWPVFLSQS*GLDQGILSPLS
Trigger: ACTCAGCGGAGAAAGGATGCCCTGGTCCAGTCCTCAAGACTGAGACAGAAACACCGGCCAGGCGCCAGGGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
3UTR CCA 72 bp CAACCTGGCGACAACCTAGGTTGGGCGGACAGGTCTTaGATTTGCTCAGCTGCCTCCCTTCCCCCAACTTTC +
Preference number: 3 (lower is better)
Translates to: QPGDNLGWADRS*ICSAASLPPTF
Trigger: GAAAGTTGGGGGAAGGGAGGCAGCTGAGCAAATCCAAGACCTGTCCGCCCAACCTAGGTTGTCGCCAGGTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
3UTR CCA 72 bp GGATCCGGGCGGAGTCTGTCTTGGAAGGGACACAGTTaGAAAAGGAAAAATCCACTTCGTTGTGGCGCTCCG +
Preference number: 3 (lower is better)
Translates to: GSGRSLSWKGHS*KRKNPLRCGAP
Trigger: CGGAGCGCCACAACGAAGTGGATTTTTCCTTTTCCAACTGTGTCCCTTCCAAGACAGACTCCGCCCGGATCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
3UTR CCA 72 bp CGGAATACAGAATACAAAACAGAAAGGAAACCAACCTaGCGACAACCTAGGTTGGGCGGACAGGTCTTGGAT +
Preference number: 3 (lower is better)
Translates to: RNTEYKTERKPT*RQPRLGGQVLD
Trigger: ATCCAAGACCTGTCCGCCCAACCTAGGTTGTCGCCAGGTTGGTTTCCTTTCTGTTTTGTATTCTGTATTCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
3UTR TCA 72 bp AAATATTGCACCTTCTTTATTGACTCCTGTAGTGTGTaGCAGCGGCTGTGTACACGGCGTGTGGATATAGTT +
Preference number: 3 (lower is better)
Translates to: KYCTFFIDSCSV*QRLCTRRVDIV
Trigger: AACTATATCCACACGCCGTGTACACAGCCGCTGTCACACACTACAGGAGTCAATAAAGAAGGTGCAATATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS-3UTR TCA 90 bp CCCTCCTCCTCCTCCGGAGAGCAAGCGACAGCCGGAGTCCCAGCCTCCCGCACTAATTCCGCCTGCAAGTaGGCTCCGTGGAAGTGCCGC +
Preference number: 4 (lower is better)
Translates to: PSSSSGEQATAGVPASRTNSACK*APWKCR
Trigger: GCGGCACTTCCACGGAGCTCACTTGCAGGCGGAATT...AGTGCGGGAGGCTGGGACTCCGGCTGTCGCTTGCTCTCCGGAGGAGGAGGAGGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS-3UTR GCA 90 bp AGGGAAAGCAGGAAGAGAAAAGCCCTCCTCCTCCTCCGGAGAGCAAGCGACAGCGCGCTGCAGGCGGGTTaGATGGCGGTGGTCGCCGCG +
Preference number: 4 (lower is better)
Translates to: RESRKRKALLLLRRASDSALQAG*MAVVAA
Trigger: CGCGGCGACCACCGCCATGCAACCCGCCTGCAGCGC...GCTGTCGCTTGCTCTCCGGAGGAGGAGGAGGGCTTTTCTCTTCCTGCTTTCCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS-3UTR TCA 90 bp TCTTCCCTGGCGCCTGGCCGGTGTTTCTGTCTCAGTCTTGAGGACTGGACCAGGTTTGTGCGCTGGGCGTaGCGCACGGCTTGCCGTCCC +
Preference number: 4 (lower is better)
Translates to: SSLAPGRCFCLSLEDWTRFVRWA*RTACRP
Trigger: GGGACGGCAAGCCGTGCGTCACGCCCAGCGCACAAA...CCTGGTCCAGTCCTCAAGACTGAGACAGAAACACCGGCCAGGCGCCAGGGAAGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS-3UTR GCA 90 bp GCTCCGGGCAAGCAAAAGGGGCTGCGGATCGGTGGAATTTCTCAAGCTAGTACCGTAAGCCGCCGCTGCTaGTGCGGCTGCGGCGGCTGC +
Preference number: 4 (lower is better)
Translates to: APGKQKGLRIGGISQASTVSRRC*CGCGGC
Trigger: GCAGCCGCCGCAGCCGCAGCAGCAGCGGCGGCTTAC...GGTACTAGCTTGAGAAATTCCACCGATCCGCAGCCCCTTTTGCTTGCCCGGAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS-3UTR CCA 90 bp TCTTCCCTGGCGCCTGGCCGGTGTTTCTGTCTCAGTCTTGAGGACTGGACCAGGGCGTCCCTTCAGCCGTaGCCAGCATGCAGGGTGCCG +
Preference number: 4 (lower is better)
Translates to: SSLAPGRCFCLSLEDWTRASLQP*PACRVP
Trigger: CGGCACCCTGCATGCTGGCCACGGCTGAAGGGACGC...CCTGGTCCAGTCCTCAAGACTGAGACAGAAACACCGGCCAGGCGCCAGGGAAGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS-3UTR TCA 90 bp GATGGGAGGCCACCTCTTCCCTGGCGCCTGGCCGGTGTTTCTGTCTCAGTCTTGTCACCTGCGTGGACGTaGGCTTCAGGCTGCTGGCGA +
Preference number: 4 (lower is better)
Translates to: DGRPPLPWRLAGVSVSVLSPAWT*ASGCWR
Trigger: TCGCCAGCAGCCTGAAGCTCACGTCCACGCAGGTGA...CAAGACTGAGACAGAAACACCGGCCAGGCGCCAGGGAAGAGGTGGCCTCCCATC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS-3UTR GCA 90 bp TCTTCCCTGGCGCCTGGCCGGTGTTTCTGTCTCAGTCTTGAGGACTGGACCAGGGGCCAGCATGCAGGGTaGCGAGTGGAAGTGCTGCTC +
Preference number: 4 (lower is better)
Translates to: SSLAPGRCFCLSLEDWTRGQHAG*RVEVLL
Trigger: GAGCAGCACTTCCACTCGGCACCCTGCATGCTGGCC...CCTGGTCCAGTCCTCAAGACTGAGACAGAAACACCGGCCAGGCGCCAGGGAAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS-3UTR GCA 90 bp CCCTCCTCCTCCTCCGGAGAGCAAGCGACAGCCGGAGTCCCAGCCTCCCGCACTTGGAAGTGCCGCTGCTaGTCCAGATTCAAAATGTCT +
Preference number: 4 (lower is better)
Translates to: PSSSSGEQATAGVPASRTWKCRC*SRFKMS
Trigger: AGACATTTTGAATCTGGAGCAGCAGCGGCACTTCCA...AGTGCGGGAGGCTGGGACTCCGGCTGTCGCTTGCTCTCCGGAGGAGGAGGAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
3UTR CAA 72 bp CTTCCCTGGCGCCTGGCCGGTGTTTCTGTCTCAGTCTaGAGGACTGGACCAGGGCATCCTTTCTCCGCTGAG +
Preference number: 4 (lower is better)
Translates to: LPWRLAGVSVSV*RTGPGHPFSAE
Trigger: CTCAGCGGAGAAAGGATGCCCTGGTCCAGTCCTCAAGACTGAGACAGAAACACCGGCCAGGCGCCAGGGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS-3UTR GCA 90 bp TTGTGGCGCTCCGGGCAAGCAAAAGGGGCTGCGGATCGGTGGAATTTCTCAAGCCAAGCCCTGATGCCCTaGAAAGTCCCCTGCGTGCAC +
Preference number: 4 (lower is better)
Translates to: LWRSGQAKGAADRWNFSSQALMP*KVPCVH
Trigger: GTGCACGCAGGGGACTTTGCAGGGCATCAGGGCTTG...GCTTGAGAAATTCCACCGATCCGCAGCCCCTTTTGCTTGCCCGGAGCGCCACAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS-3UTR GCA 90 bp TCTGTCTCAGTCTTGAGGACTGGACCAGGGCATCCTTTCTCCGCTGAGTTCCATCGAGCCGTAGGTTTGTaGGCTGGGCGTGACGCACGG +
Preference number: 4 (lower is better)
Translates to: SVSVLRTGPGHPFSAEFHRAVGL*AGRDAR
Trigger: CCGTGCGTCACGCCCAGCGCACAAACCTACGGCTCG...ATGGAACTCAGCGGAGAAAGGATGCCCTGGTCCAGTCCTCAAGACTGAGACAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
3UTR CAA 72 bp CCAACCTGGCGACAACCTAGGTTGGGCGGACAGGTCTaGGATTTGCTCAGCTGCCTCCCTTCCCCCAACTTT +
Preference number: 4 (lower is better)
Translates to: PTWRQPRLGGQV*DLLSCLPSPNF
Trigger: AAAGTTGGGGGAAGGGAGGCAGCTGAGCAAATCCAAGACCTGTCCGCCCAACCTAGGTTGTCGCCAGGTTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS-3UTR TCA 90 bp TCAGTCTTGAGGACTGGACCAGGGCATCCTTTCTCCGCTGAGTTCCATGCCCCAAGAAAGGGGTGGAGGTaGCCGGGCTTGGTAACATCA +
Preference number: 4 (lower is better)
Translates to: SVLRTGPGHPFSAEFHAPRKGWR*PGLVTS
Trigger: TGATGTTACCAAGCCCGGTCACCTCCACCCCTTTCT...TGGGGCATGGAACTCAGCGGAGAAAGGATGCCCTGGTCCAGTCCTCAAGACTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS-3UTR GCA 90 bp TTGTGGCGCTCCGGGCAAGCAAAAGGGGCTGCGGATCGGTGGAATTTCTCAAGCCCTGCCGCTGTCTCTTaGACTTGTACCTGCGATTCT +
Preference number: 4 (lower is better)
Translates to: LWRSGQAKGAADRWNFSSPAAVS*TCTCDS
Trigger: AGAATCGCAGGTACAAGTGCAAGAGACAGCGGCAGG...GCTTGAGAAATTCCACCGATCCGCAGCCCCTTTTGCTTGCCCGGAGCGCCACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS-3UTR GCA 90 bp CGGAATACAGAATACAAAACAGAAAGGAAACCAACCTGGCGACAACCTAGGTTGGCTGTAAGCCGCCGCTaGTGCTGCGGCTGCGGCGGC +
Preference number: 4 (lower is better)
Translates to: RNTEYKTERKPTWRQPRLAVSRR*CCGCGG
Trigger: GCCGCCGCAGCCGCAGCAGCAGCGGCGGCTTACAGC...CAACCTAGGTTGTCGCCAGGTTGGTTTCCTTTCTGTTTTGTATTCTGTATTCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS-3UTR GCA 90 bp GCACCTTCTTTATTGACTCCTGTAGTGTGTGACAGCGGCTGTGTACACGGCGTGGCCGAGTGGAAGTGCTaGTCCAATTCCGCCTGCAAG +
Preference number: 4 (lower is better)
Translates to: APSLLTPVVCDSGCVHGVAEWKC*SNSACK
Trigger: CTTGCAGGCGGAATTGGAGCAGCACTTCCACTCGGC...CACGCCGTGTACACAGCCGCTGTCACACACTACAGGAGTCAATAAAGAAGGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS-3UTR GCA 90 bp GCCTGGAGTGAGCTGCGACCATGGCCCCTTGGAAGGAGCGATACGTCTGTATTTCGAAGCCTCCCAGGTTaGTCACGTTCACAAAGGATC +
Preference number: 4 (lower is better)
Translates to: AWSELRPWPLGRSDTSVFRSLPG*SRSQRI
Trigger: GATCCTTTGTGAACGTGAGCAACCTGGGAGGCTTCG...AAATACAGACGTATCGCTCCTTCCAAGGGGCCATGGTCGCAGCTCACTCCAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
3UTR CAA 72 bp GGGATCCGGGCGGAGTCTGTCTTGGAAGGGACACAGTaGGAAAAGGAAAAATCCACTTCGTTGTGGCGCTCC +
Preference number: 4 (lower is better)
Translates to: GIRAESVLEGTQ*EKEKSTSLWRS
Trigger: GGAGCGCCACAACGAAGTGGATTTTTCCTTTTCCAACTGTGTCCCTTCCAAGACAGACTCCGCCCGGATCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
3UTR CAA 72 bp AAAACAGAAAGGAAACCAACCTGGCGACAACCTAGGTaGGGCGGACAGGTCTTGGATTTGCTCAGCTGCCTC +
Preference number: 4 (lower is better)
Translates to: KTERKPTWRQPR*GGQVLDLLSCL
Trigger: GAGGCAGCTGAGCAAATCCAAGACCTGTCCGCCCAACCTAGGTTGTCGCCAGGTTGGTTTCCTTTCTGTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS-3UTR GCA 90 bp AAAACAGAAAGGAAACCAACCTGGCGACAACCTAGGTTGGGCGGACAGGTCTTGCCGTGGAAGTGCCGCTaGTGCTCCAGATTCAAAATG +
Preference number: 4 (lower is better)
Translates to: KTERKPTWRQPRLGGQVLPWKCR*CSRFKM
Trigger: CATTTTGAATCTGGAGCAGCAGCGGCACTTCCACGG...CAAGACCTGTCCGCCCAACCTAGGTTGTCGCCAGGTTGGTTTCCTTTCTGTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS-3UTR GCA 90 bp GGAATACAGAATACAAAACAGAAAGGAAACCAACCTGGCGACAACCTAGGTTGGCTCGTCCTCCTCCCCTaGATCGGAAAACTGCGTCCC +
Preference number: 4 (lower is better)
Translates to: GIQNTKQKGNQPGDNLGWLVLLP*IGKLRP
Trigger: GGGACGCAGTTTTCCGATGCAGGGGAGGAGGACGAG...CCAACCTAGGTTGTCGCCAGGTTGGTTTCCTTTCTGTTTTGTATTCTGTATTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS GCA 90 bp GGAGTAGGCGCCGGCGCCCACGCCGTAGGGCGAGCCGTAGGTTTGTaGGCTGGGCGTGACGCACGGCTTGCCGTCCCGCACGAGCACCGG +
Preference number: 5 (lower is better)
Translates to: GVGAGAHAVGRAVGL*AGRDARLAVPHEHR
Trigger: CCGGTGCTCGTGCGGGACGGCAAGCCGTGCGTCACGCCCAGCGCACAAACCTACGGCTCGCCCTACGGCGTGGGCGCCGGCGCCTACTCC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS GCA 90 bp GTAGCTGCCGCTGTAAGCCGCCGCTGCTGCTGCGGCTGCGGCGGCTaGAGCGGCTGCGGCGGCCGAGTTCCCGTAGCCGTAGGCGGGGAA +
Preference number: 5 (lower is better)
Translates to: VAAAVSRRCCCGCGG*SGCGGRVPVAVGGE
Trigger: TTCCCCGCCTACGGCTACGGGAACTCGGCCGCCGCAGCCGCTGCAGCCGCCGCAGCCGCAGCAGCAGCGGCGGCTTACAGCGGCAGCTAC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS CCA 90 bp CGTTCACAAAGGATCCACCGCCGGTGGCGCTGCAGGCGGGTTGCATaGCGGTGGTCGCCGCGGAGGCCGTGCCGCCACCACCACCGCCGC +
Preference number: 5 (lower is better)
Translates to: RSQRIHRRWRCRRVA*RWSPRRPCRHHHRR
Trigger: GCGGCGGTGGTGGTGGCGGCACGGCCTCCGCGGCGACCACCGCCATGCAACCCGCCTGCAGCGCCACCGGCGGTGGATCCTTTGTGAACG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS GCA 90 bp CTCACGTTCACAAAGGATCCACCGCCGGTGGCGCTGCAGGCGGGTTaGATGGCGGTGGTCGCCGCGGAGGCCGTGCCGCCACCACCACCG +
Preference number: 5 (lower is better)
Translates to: LTFTKDPPPVALQAG*MAVVAAEAVPPPPP
Trigger: CGGTGGTGGTGGCGGCACGGCCTCCGCGGCGACCACCGCCATGCAACCCGCCTGCAGCGCCACCGGCGGTGGATCCTTTGTGAACGTGAG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS GCA 90 bp AGCCCTGATGCCCTGCAAAGTCCCCTGCGTGCACGCGGACCCGGCTaGAGCACCTTGATGCAAGGGTTGCGCGCCGCCGCCGCTGCCGAA +
Preference number: 5 (lower is better)
Translates to: SPDALQSPLRARGPG*STLMQGLRAAAAAE
Trigger: TTCGGCAGCGGCGGCGGCGCGCAACCCTTGCATCAAGGTGCTGCAGCCGGGTCCGCGTGCACGCAGGGGACTTTGCAGGGCATCAGGGCT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS-3UTR CAA 90 bp AAGCCCTCCTCCTCCTCCGGAGAGCAAGCGACAGCCGGAGTCCCAGCCTCCCGCGGGCGAGCCGTAGGTTaGTGCGCTGGGCGTGACGCA +
Preference number: 5 (lower is better)
Translates to: KPSSSSGEQATAGVPASRGRAVG*CAGRDA
Trigger: TGCGTCACGCCCAGCGCACAAACCTACGGCTCGCCC...GCGGGAGGCTGGGACTCCGGCTGTCGCTTGCTCTCCGGAGGAGGAGGAGGGCTT
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS-3UTR CAA 90 bp GCCTGGAGTGAGCTGCGACCATGGCCCCTTGGAAGGAGCGATACGTCTGTATTTGGCGCTGCAGGCGGGTaGCATGGCGGTGGTCGCCGC +
Preference number: 5 (lower is better)
Translates to: AWSELRPWPLGRSDTSVFGAAGG*HGGGRR
Trigger: GCGGCGACCACCGCCATGCAACCCGCCTGCAGCGCC...AAATACAGACGTATCGCTCCTTCCAAGGGGCCATGGTCGCAGCTCACTCCAGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS CCA 90 bp CCTCGTCCTCCTCCCCTGCATCGGAAAACTGCGTCCCTTCAGCCGTaGCCAGCATGCAGGGTGCCGAGTGGAAGTGCTGCTCCAATTCCG +
Preference number: 5 (lower is better)
Translates to: PRPPPLHRKTASLQP*PACRVPSGSAAPIP
Trigger: CGGAATTGGAGCAGCACTTCCACTCGGCACCCTGCATGCTGGCCACGGCTGAAGGGACGCAGTTTTCCGATGCAGGGGAGGAGGACGAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS-3UTR CAA 90 bp CAAGCGACAGCCGGAGTCCCAGCCTCCCGCACTCTCCGCAGAGTCAGGATGGGACACAACCTCCTCTTCTaGTTCCTTGGGCCCGCTGCA +
Preference number: 5 (lower is better)
Translates to: QATAGVPASRTLRRVRMGHNLLF*FLGPAA
Trigger: TGCAGCGGGCCCAAGGAACAAGAAGAGGAGGTTGTG...TCCCATCCTGACTCTGCGGAGAGTGCGGGAGGCTGGGACTCCGGCTGTCGCTTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS-3UTR CAA 90 bp GCCTGGAGTGAGCTGCGACCATGGCCCCTTGGAAGGAGCGATACGTCTGTATTTACCTTGATGCAAGGGTaGCGCGCCGCCGCCGCTGCC +
Preference number: 5 (lower is better)
Translates to: AWSELRPWPLGRSDTSVFTLMQG*RAAAAA
Trigger: GGCAGCGGCGGCGGCGCGCAACCCTTGCATCAAGGT...AAATACAGACGTATCGCTCCTTCCAAGGGGCCATGGTCGCAGCTCACTCCAGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS GCA 90 bp CCTCCCCTGCATCGGAAAACTGCGTCCCTTCAGCCGTGGCCAGCATaGAGGGTGCCGAGTGGAAGTGCTGCTCCAATTCCGCCTGCAAGT +
Preference number: 5 (lower is better)
Translates to: PPLHRKTASLQPWPA*RVPSGSAAPIPPAS
Trigger: ACTTGCAGGCGGAATTGGAGCAGCACTTCCACTCGGCACCCTGCATGCTGGCCACGGCTGAAGGGACGCAGTTTTCCGATGCAGGGGAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS GCA 90 bp TGCATCGGAAAACTGCGTCCCTTCAGCCGTGGCCAGCATGCAGGGTaGCGAGTGGAAGTGCTGCTCCAATTCCGCCTGCAAGTGAGCTCC +
Preference number: 5 (lower is better)
Translates to: CIGKLRPFSRGQHAG*RVEVLLQFRLQVSS
Trigger: GGAGCTCACTTGCAGGCGGAATTGGAGCAGCACTTCCACTCGGCACCCTGCATGCTGGCCACGGCTGAAGGGACGCAGTTTTCCGATGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS GCA 90 bp TTCTCTCCCTCTTCTTCCTCGTCCTCCTCCCCTGCATCGGAAAACTaGGTCCCTTCAGCCGTGGCCAGCATGCAGGGTGCCGAGTGGAAG +
Preference number: 5 (lower is better)
Translates to: FSPSSSSSSSPASEN*VPSAVASMQGAEWK
Trigger: CTTCCACTCGGCACCCTGCATGCTGGCCACGGCTGAAGGGACGCAGTTTTCCGATGCAGGGGAGGAGGACGAGGAAGAAGAGGGAGAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS-3UTR CAA 90 bp TCTTCCCTGGCGCCTGGCCGGTGTTTCTGTCTCAGTCTTGAGGACTGGACCAGGCCGAAGCCTCCCAGGTaGCTCACGTTCACAAAGGAT +
Preference number: 5 (lower is better)
Translates to: SSLAPGRCFCLSLEDWTRPKPPR*LTFTKD
Trigger: ATCCTTTGTGAACGTGAGCAACCTGGGAGGCTTCGG...CCTGGTCCAGTCCTCAAGACTGAGACAGAAACACCGGCCAGGCGCCAGGGAAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS TCA 90 bp ATGCAGGGTGCCGAGTGGAAGTGCTGCTCCAATTCCGCCTGCAAGTaGGCTCCGTGGAAGTGCCGCTGCTGCTCCAGATTCAAAATGTCT +
Preference number: 5 (lower is better)
Translates to: MQGAEWKCCSNSACK*APWKCRCCSRFKMS
Trigger: AGACATTTTGAATCTGGAGCAGCAGCGGCACTTCCACGGAGCTCACTTGCAGGCGGAATTGGAGCAGCACTTCCACTCGGCACCCTGCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS GCA 90 bp GGCTCCGTTCGCTCACAACCTCCTCTTCTTGTTCCTTGGGCCCGCTaGAAGCGTCTCGGAGAACTGTATGGACATAGCTCTGAGGACAGA +
Preference number: 5 (lower is better)
Translates to: GSVRSQPPLLVPWAR*KRLGELYGHSSEDR
Trigger: TCTGTCCTCAGAGCTATGTCCATACAGTTCTCCGAGACGCTTGCAGCGGGCCCAAGGAACAAGAAGAGGAGGTTGTGAGCGAACGGAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS-3UTR CAA 90 bp GCCTGGAGTGAGCTGCGACCATGGCCCCTTGGAAGGAGCGATACGTCTGTATTTTCCTGCCGCTGTCTCTaGCACTTGTACCTGCGATTC +
Preference number: 5 (lower is better)
Translates to: AWSELRPWPLGRSDTSVFSCRCL*HLYLRF
Trigger: GAATCGCAGGTACAAGTGCAAGAGACAGCGGCAGGA...AAATACAGACGTATCGCTCCTTCCAAGGGGCCATGGTCGCAGCTCACTCCAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS-3UTR CAA 90 bp CGGAATACAGAATACAAAACAGAAAGGAAACCAACCTGGCGACAACCTAGGTTGGGCGTGACGCACGGCTaGCCGTCCCGCACGAGCACC +
Preference number: 5 (lower is better)
Translates to: RNTEYKTERKPTWRQPRLGVTHG*PSRTST
Trigger: GGTGCTCGTGCGGGACGGCAAGCCGTGCGTCACGCC...CAACCTAGGTTGTCGCCAGGTTGGTTTCCTTTCTGTTTTGTATTCTGTATTCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS CCA 72 bp CACCGCCGGTGGCGCTGCAGGCGGGTTGCATGGCGGTaGTCGCCGCGGAGGCCGTGCCGCCACCACCACCGC +
Preference number: 6 (lower is better)
Translates to: HRRWRCRRVAWR*SPRRPCRHHHR
Trigger: GCGGTGGTGGTGGCGGCACGGCCTCCGCGGCGACCACCGCCATGCAACCCGCCTGCAGCGCCACCGGCGGTG
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS CCA 72 bp AGGATCCACCGCCGGTGGCGCTGCAGGCGGGTTGCATaGCGGTGGTCGCCGCGGAGGCCGTGCCGCCACCAC +
Preference number: 6 (lower is better)
Translates to: RIHRRWRCRRVA*RWSPRRPCRHH
Trigger: GTGGTGGCGGCACGGCCTCCGCGGCGACCACCGCCATGCAACCCGCCTGCAGCGCCACCGGCGGTGGATCCT
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS CAA 72 bp GGCGCCGGCGCCCACGCCGTAGGGCGAGCCGTAGGTTaGTGCGCTGGGCGTGACGCACGGCTTGCCGTCCCG +
Preference number: 6 (lower is better)
Translates to: GAGAHAVGRAVG*CAGRDARLAVP
Trigger: CGGGACGGCAAGCCGTGCGTCACGCCCAGCGCACAAACCTACGGCTCGCCCTACGGCGTGGGCGCCGGCGCC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS GCA 72 bp GCCGGCGCCCACGCCGTAGGGCGAGCCGTAGGTTTGTaGGCTGGGCGTGACGCACGGCTTGCCGTCCCGCAC +
Preference number: 6 (lower is better)
Translates to: AGAHAVGRAVGL*AGRDARLAVPH
Trigger: GTGCGGGACGGCAAGCCGTGCGTCACGCCCAGCGCACAAACCTACGGCTCGCCCTACGGCGTGGGCGCCGGC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS GCA 72 bp CACCGCCGCCACCGGTCGGATAGGCGCAGCCGTAGCTaGCGCTGTAAGCCGCCGCTGCTGCTGCGGCTGCGG +
Preference number: 6 (lower is better)
Translates to: HRRHRSDRRSRS*RCKPPLLLRLR
Trigger: CCGCAGCCGCAGCAGCAGCGGCGGCTTACAGCGGCAGCTACGGCTGCGCCTATCCGACCGGTGGCGGCGGTG
75% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS GCA 72 bp ACAAAGGATCCACCGCCGGTGGCGCTGCAGGCGGGTTaGATGGCGGTGGTCGCCGCGGAGGCCGTGCCGCCA +
Preference number: 6 (lower is better)
Translates to: TKDPPPVALQAG*MAVVAAEAVPP
Trigger: TGGCGGCACGGCCTCCGCGGCGACCACCGCCATGCAACCCGCCTGCAGCGCCACCGGCGGTGGATCCTTTGT
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS CAA 90 bp GTAGGAGTAGGCGCCGGCGCCCACGCCGTAGGGCGAGCCGTAGGTTaGTGCGCTGGGCGTGACGCACGGCTTGCCGTCCCGCACGAGCAC +
Preference number: 6 (lower is better)
Translates to: VGVGAGAHAVGRAVG*CAGRDARLAVPHEH
Trigger: GTGCTCGTGCGGGACGGCAAGCCGTGCGTCACGCCCAGCGCACAAACCTACGGCTCGCCCTACGGCGTGGGCGCCGGCGCCTACTCCTAC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS CAA 90 bp GCTCACGTTCACAAAGGATCCACCGCCGGTGGCGCTGCAGGCGGGTaGCATGGCGGTGGTCGCCGCGGAGGCCGTGCCGCCACCACCACC +
Preference number: 6 (lower is better)
Translates to: AHVHKGSTAGGAAGG*HGGGRRGGRAATTT
Trigger: GGTGGTGGTGGCGGCACGGCCTCCGCGGCGACCACCGCCATGCAACCCGCCTGCAGCGCCACCGGCGGTGGATCCTTTGTGAACGTGAGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS TCA 72 bp CGCCGTAGGGCGAGCCGTAGGTTTGTGCGCTGGGCGTaGCGCACGGCTTGCCGTCCCGCACGAGCACCGGCA +
Preference number: 6 (lower is better)
Translates to: RRRASRRFVRWA*RTACRPARAPA
Trigger: TGCCGGTGCTCGTGCGGGACGGCAAGCCGTGCGTCACGCCCAGCGCACAAACCTACGGCTCGCCCTACGGCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS GCA 72 bp TGCTCACGTTCACAAAGGATCCACCGCCGGTGGCGCTaGAGGCGGGTTGCATGGCGGTGGTCGCCGCGGAGG +
Preference number: 6 (lower is better)
Translates to: CSRSQRIHRRWR*RRVAWRWSPRR
Trigger: CCTCCGCGGCGACCACCGCCATGCAACCCGCCTGCAGCGCCACCGGCGGTGGATCCTTTGTGAACGTGAGCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS GCA 72 bp CAGCACCTTGATGCAAGGGTTGCGCGCCGCCGCCGCTaGCGAAGCCTCCCAGGTTGCTCACGTTCACAAAGG +
Preference number: 6 (lower is better)
Translates to: QHLDARVARRRR*RSLPGCSRSQR
Trigger: CCTTTGTGAACGTGAGCAACCTGGGAGGCTTCGGCAGCGGCGGCGGCGCGCAACCCTTGCATCAAGGTGCTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS CCA 72 bp CCTCCCCTGCATCGGAAAACTGCGTCCCTTCAGCCGTaGCCAGCATGCAGGGTGCCGAGTGGAAGTGCTGCT +
Preference number: 6 (lower is better)
Translates to: PPLHRKTASLQP*PACRVPSGSAA
Trigger: AGCAGCACTTCCACTCGGCACCCTGCATGCTGGCCACGGCTGAAGGGACGCAGTTTTCCGATGCAGGGGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS GCA 72 bp TCTTCTTCCTCGTCCTCCTCCCCTGCATCGGAAAACTaGGTCCCTTCAGCCGTGGCCAGCATGCAGGGTGCC +
Preference number: 6 (lower is better)
Translates to: SSSSSSSPASEN*VPSAVASMQGA
Trigger: GGCACCCTGCATGCTGGCCACGGCTGAAGGGACGCAGTTTTCCGATGCAGGGGAGGAGGACGAGGAAGAAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS TCA 72 bp GCCGAGTGGAAGTGCTGCTCCAATTCCGCCTGCAAGTaGGCTCCGTGGAAGTGCCGCTGCTGCTCCAGATTC +
Preference number: 6 (lower is better)
Translates to: AEWKCCSNSACK*APWKCRCCSRF
Trigger: GAATCTGGAGCAGCAGCGGCACTTCCACGGAGCTCACTTGCAGGCGGAATTGGAGCAGCACTTCCACTCGGC
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS GCA 72 bp AAACTGCGTCCCTTCAGCCGTGGCCAGCATGCAGGGTaGCGAGTGGAAGTGCTGCTCCAATTCCGCCTGCAA +
Preference number: 6 (lower is better)
Translates to: KLRPFSRGQHAG*RVEVLLQFRLQ
Trigger: TTGCAGGCGGAATTGGAGCAGCACTTCCACTCGGCACCCTGCATGCTGGCCACGGCTGAAGGGACGCAGTTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11
CDS GCA 72 bp CATCGGAAAACTGCGTCCCTTCAGCCGTGGCCAGCATaGAGGGTGCCGAGTGGAAGTGCTGCTCCAATTCCG +
Preference number: 6 (lower is better)
Translates to: HRKTASLQPWPA*RVPSGSAAPIP
Trigger: CGGAATTGGAGCAGCACTTCCACTCGGCACCCTGCATGCTGGCCACGGCTGAAGGGACGCAGTTTTCCGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057178.11