Pregenerated sensors for NKX2-2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027434Ensembl transcript IDs: ENSMUST00000067075.7, ENSMUST00000109970.5
Found 90 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAGAGGCAGGCCCGGTGGGGATACAGGCCCATCCAGAACGTCATTTaGCAACGATCACTAGCGATATTTACAACGAAGAGCGAAATTTGC | + |
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Preference number: 1 (lower is better) Translates to: ERQARWGYRPIQNVI*QRSLAIFTTKSEIC Trigger: GCAAATTTCGCTCTTCGTTGTAAATATCGCTAGTGATCGTTGCCAAATGACGTTCTGGATGGGCCTGTATCCCCACCGGGCCTGCCTCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| 3UTR CCA 90 bp | CCGGTTGGTCCTTTCTCTTTTCAAGTGACAACGTTAACGTTGGGATaGTTTGGTCCCCTCAGGGAGAGAGAGGCAAAGAAGCAAAGCTGC | + |
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Preference number: 1 (lower is better) Translates to: PVGPFSFQVTTLTLG*FGPLREREAKKQSC Trigger: GCAGCTTTGCTTCTTTGCCTCTCTCTCCCTGAGGGGACCAAACCATCCCAACGTTAACGTTGTCACTTGAAAAGAGAAAGGACCAACCGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| 3UTR CCA 90 bp | AAACATAACCCACCGAAAACAAACGACAAAGAGAGGCAGGCCCGGTaGGGATACAGGCCCATCCAGAACGTCATTTGGCAACGATCACTA | + |
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Preference number: 1 (lower is better) Translates to: KHNPPKTNDKERQAR*GYRPIQNVIWQRSL Trigger: TAGTGATCGTTGCCAAATGACGTTCTGGATGGGCCTGTATCCCCACCGGGCCTGCCTCTCTTTGTCGTTTGTTTTCGGTGGGTTATGTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| 3UTR TCA 90 bp | CTGCCACTCGGGGAGGCACAGGCAACCTCCCTGTGCCTCCTCAACTaGGTCGAAAGTCAGACTCGACTCTATAATAATAATTATAATAAT | + |
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Preference number: 1 (lower is better) Translates to: LPLGEAQATSLCLLN*VESQTRLYNNNYNN Trigger: ATTATTATAATTATTATTATAGAGTCGAGTCTGACTTTCGACTCAGTTGAGGAGGCACAGGGAGGTTGCCTGTGCCTCCCCGAGTGGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| 3UTR TCA 90 bp | GGAAATATATGCTTCAATTGTGGTGGTGACAGTAACAGAGACAGTTaGCATCCACAAGGCAGACGAAAGAAAAAGGTTGAATGCCATCAA | + |
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Preference number: 1 (lower is better) Translates to: GNICFNCGGDSNRDS*HPQGRRKKKVECHQ Trigger: TTGATGGCATTCAACCTTTTTCTTTCGTCTGCCTTGTGGATGTCAACTGTCTCTGTTACTGTCACCACCACAATTGAAGCATATATTTCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109970.5 |
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| 3UTR GCA 90 bp | ATTTGGCAACGATCACTAGCGATATTTACAACGAAGAGCGAAATTTaGCACCAGTTGTCAGAACGTGTACATGGCCATAAATATTTAGCA | + |
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Preference number: 1 (lower is better) Translates to: IWQRSLAIFTTKSEI*HQLSERVHGHKYLA Trigger: TGCTAAATATTTATGGCCATGTACACGTTCTGACAACTGGTGGCAAATTTCGCTCTTCGTTGTAAATATCGCTAGTGATCGTTGCCAAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| 3UTR CAA 90 bp | AGAGAGGCAGGCCCGGTGGGGATACAGGCCCATCCAGAACGTCATTaGGCAACGATCACTAGCGATATTTACAACGAAGAGCGAAATTTG | + |
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Preference number: 2 (lower is better) Translates to: REAGPVGIQAHPERH*ATITSDIYNEERNL Trigger: CAAATTTCGCTCTTCGTTGTAAATATCGCTAGTGATCGTTGCCAAATGACGTTCTGGATGGGCCTGTATCCCCACCGGGCCTGCCTCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| 3UTR-3UTR CCA 90 bp | ATTTACAACGAAGAGCGAAATTTGCCACCAGTTGTCAGAACGTGTACATGGCCAACGTTAACGTTGGGATaGTTTGGTCCCCTCAGGGAG | + |
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Preference number: 2 (lower is better) Translates to: IYNEERNLPPVVRTCTWPTLTLG*FGPLRE Trigger: CTCCCTGAGGGGACCAAACCATCCCAACGTTAACGT...TGGCCATGTACACGTTCTGACAACTGGTGGCAAATTTCGCTCTTCGTTGTAAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| 3UTR CAA 90 bp | GTAACAGAGACAGTTGACATCCACAAGGCAGACGAAAGAAAAAGGTaGAATGCCATCAACCTTTTCATCACACTCCAAGGGACAAGCACC | + |
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Preference number: 2 (lower is better) Translates to: VTETVDIHKADERKR*NAINLFITLQGTST Trigger: GGTGCTTGTCCCTTGGAGTGTGATGAAAAGGTTGATGGCATTCAACCTTTTTCTTTCGTCTGCCTTGTGGATGTCAACTGTCTCTGTTAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109970.5 |
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| 3UTR-3UTR TCA 90 bp | CCTGGCACAGGAAACATTTTGAAGAGGTGGAAATATATGCTTCAATTGTGGTGGACGAAAGAAAAAGGTTaGATGCCATCAACCTTTTCA | + |
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Preference number: 2 (lower is better) Translates to: PGTGNILKRWKYMLQLWWTKEKG*MPSTFS Trigger: TGAAAAGGTTGATGGCATTCAACCTTTTTCTTTCGT...CCACCACAATTGAAGCATATATTTCCACCTCTTCAAAATGTTTCCTGTGCCAGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000109970.5 |
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| 3UTR-3UTR TCA 90 bp | ATTTGCCACCAGTTGTCAGAACGTGTACATGGCCATAAATATTTAGCATTTTCTTTGCTTTTAGAAGGCTaGCAATATCGCTACTCACAC | + |
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Preference number: 2 (lower is better) Translates to: ICHQLSERVHGHKYLAFSLLLEG*QYRYSH Trigger: GTGTGAGTAGCGATATTGTCAGCCTTCTAAAAGCAA...AGAAAATGCTAAATATTTATGGCCATGTACACGTTCTGACAACTGGTGGCAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| 3UTR CAA 90 bp | CGATCACTAGCGATATTTACAACGAAGAGCGAAATTTGCCACCAGTaGTCAGAACGTGTACATGGCCATAAATATTTAGCATTTTCTTAT | + |
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Preference number: 2 (lower is better) Translates to: RSLAIFTTKSEICHQ*SERVHGHKYLAFSY Trigger: ATAAGAAAATGCTAAATATTTATGGCCATGTACACGTTCTGACAACTGGTGGCAAATTTCGCTCTTCGTTGTAAATATCGCTAGTGATCG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| 3UTR CCA 72 bp | AGGATCGAGTCCTCCTCGCCACCGGCGCCGCTGGGGTaGGGCCAGGGCCTAAGGCCTCCAGTCTTGGAGGGG | + |
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Preference number: 3 (lower is better) Translates to: RIESSSPPAPLG*GQGLRPPVLEG Trigger: CCCCTCCAAGACTGGAGGCCTTAGGCCCTGGCCCCACCCCAGCGGCGCCGGTGGCGAGGAGGACTCGATCCT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| 3UTR CCA 72 bp | CCACCGAAAACAAACGACAAAGAGAGGCAGGCCCGGTaGGGATACAGGCCCATCCAGAACGTCATTTGGCAA | + |
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Preference number: 3 (lower is better) Translates to: PPKTNDKERQAR*GYRPIQNVIWQ Trigger: TTGCCAAATGACGTTCTGGATGGGCCTGTATCCCCACCGGGCCTGCCTCTCTTTGTCGTTTGTTTTCGGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| 3UTR CCA 72 bp | GCCCGGTGGGGATACAGGCCCATCCAGAACGTCATTTaGCAACGATCACTAGCGATATTTACAACGAAGAGC | + |
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Preference number: 3 (lower is better) Translates to: ARWGYRPIQNVI*QRSLAIFTTKS Trigger: GCTCTTCGTTGTAAATATCGCTAGTGATCGTTGCCAAATGACGTTCTGGATGGGCCTGTATCCCCACCGGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| 3UTR CCA 72 bp | CTCTTTTCAAGTGACAACGTTAACGTTGGGATGGTTTaGTCCCCTCAGGGAGAGAGAGGCAAAGAAGCAAAG | + |
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Preference number: 3 (lower is better) Translates to: LFSSDNVNVGMV*SPQGERGKEAK Trigger: CTTTGCTTCTTTGCCTCTCTCTCCCTGAGGGGACCAAACCATCCCAACGTTAACGTTGTCACTTGAAAAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| 3UTR CCA 72 bp | CCTTTCTCTTTTCAAGTGACAACGTTAACGTTGGGATaGTTTGGTCCCCTCAGGGAGAGAGAGGCAAAGAAG | + |
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Preference number: 3 (lower is better) Translates to: PFSFQVTTLTLG*FGPLREREAKK Trigger: CTTCTTTGCCTCTCTCTCCCTGAGGGGACCAAACCATCCCAACGTTAACGTTGTCACTTGAAAAGAGAAAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| 3UTR-3UTR CAA 90 bp | ATACAGGCCCATCCAGAACGTCATTTGGCAACGATCACTAGCGATATTTACAACGTGACAACGTTAACGTaGGGATGGTTTGGTCCCCTC | + |
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Preference number: 3 (lower is better) Translates to: IQAHPERHLATITSDIYNVTTLT*GWFGPL Trigger: GAGGGGACCAAACCATCCCAACGTTAACGTTGTCAC...GTTGTAAATATCGCTAGTGATCGTTGCCAAATGACGTTCTGGATGGGCCTGTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| 3UTR TCA 72 bp | CAGTTGACATCCACAAGGCAGACGAAAGAAAAAGGTTaGATGCCATCAACCTTTTCATCACACTCCAAGGGA | + |
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Preference number: 3 (lower is better) Translates to: QLTSTRQTKEKG*MPSTFSSHSKG Trigger: TCCCTTGGAGTGTGATGAAAAGGTTGATGGCATTCAACCTTTTTCTTTCGTCTGCCTTGTGGATGTCAACTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109970.5 |
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| 3UTR GCA 72 bp | CGATCACTAGCGATATTTACAACGAAGAGCGAAATTTaGCACCAGTTGTCAGAACGTGTACATGGCCATAAA | + |
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Preference number: 3 (lower is better) Translates to: RSLAIFTTKSEI*HQLSERVHGHK Trigger: TTTATGGCCATGTACACGTTCTGACAACTGGTGGCAAATTTCGCTCTTCGTTGTAAATATCGCTAGTGATCG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| 3UTR-3UTR CAA 90 bp | CCTGGCACAGGAAACATTTTGAAGAGGTGGAAATATATGCTTCAATTGTGGTGGGACGAAAGAAAAAGGTaGAATGCCATCAACCTTTTC | + |
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Preference number: 3 (lower is better) Translates to: PGTGNILKRWKYMLQLWWDERKR*NAINLF Trigger: GAAAAGGTTGATGGCATTCAACCTTTTTCTTTCGTC...CCACCACAATTGAAGCATATATTTCCACCTCTTCAAAATGTTTCCTGTGCCAGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000109970.5 |
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| CDS-3UTR CCA 90 bp | ACGTTGGGATGGTTTGGTCCCCTCAGGGAGAGAGAGGCAAAGAAGCAAAGCTGCGCGGCTGCCAGGTCCTaGGCTTTGAGCGCGTGGCAC | + |
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Preference number: 4 (lower is better) Translates to: TLGWFGPLREREAKKQSCAAARS*ALSAWH Trigger: GTGCCACGCGCTCAAAGCCCAGGACCTGGCAGCCGC...GCAGCTTTGCTTCTTTGCCTCTCTCTCCCTGAGGGGACCAAACCATCCCAACGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS-3UTR CCA 90 bp | CGTTGGGATGGTTTGGTCCCCTCAGGGAGAGAGAGGCAAAGAAGCAAAGCTGCACCGTGCAGGGAGTATTaGAGGCCCTCGGTGCTGGCC | + |
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Preference number: 4 (lower is better) Translates to: RWDGLVPSGRERQRSKAAPCREY*RPSVLA Trigger: GGCCAGCACCGAGGGCCTCCAATACTCCCTGCACGG...TGCAGCTTTGCTTCTTTGCCTCTCTCTCCCTGAGGGGACCAAACCATCCCAACG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS-3UTR CCA 90 bp | GGGTGGGGGCCGGTTGGTCCTTTCTCTTTTCAAGTGACAACGTTAACGTTGGGATTCGCTCTCCTCCTCTaGCCCTTCGGCCACCGAGCC | + |
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Preference number: 4 (lower is better) Translates to: GWGPVGPFSFQVTTLTLGFALLL*PFGHRA Trigger: GGCTCGGTGGCCGAAGGGCCAGAGGAGGAGAGCGAA...TCCCAACGTTAACGTTGTCACTTGAAAAGAGAAAGGACCAACCGGCCCCCACCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS-3UTR CCA 90 bp | GTGGGGGCCGGTTGGTCCTTTCTCTTTTCAAGTGACAACGTTAACGTTGGGATGGGAGGCCCTCGGTGCTaGCCAGCCAGCGAGTGTAGG | + |
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Preference number: 4 (lower is better) Translates to: VGAGWSFLFSSDNVNVGMGGPRC*PASECR Trigger: CCTACACTCGCTGGCTGGCCAGCACCGAGGGCCTCC...CATCCCAACGTTAACGTTGTCACTTGAAAAGAGAAAGGACCAACCGGCCCCCAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS-3UTR CCA 90 bp | ATCGAAAGCTTTCAGCGCCCGGCGCTCTTGGGGAAACCACGTGAAACTGCTGAGGTCAGCCGAGGGCTCTaGGGATTTGGAGCTCGAGTC | + |
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Preference number: 4 (lower is better) Translates to: IESFQRPALLGKPRETAEVSRGL*GFGARV Trigger: GACTCGAGCTCCAAATCCCCAGAGCCCTCGGCTGAC...CTCAGCAGTTTCACGTGGTTTCCCCAAGAGCGCCGGGCGCTGAAAGCTTTCGAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS-3UTR CCA 90 bp | CGTTGGGATGGTTTGGTCCCCTCAGGGAGAGAGAGGCAAAGAAGCAAAGCTGCACACCAAGTCCACTGCTaGGCCTGGACCAGGGGGTGT | + |
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Preference number: 4 (lower is better) Translates to: RWDGLVPSGRERQRSKAAHQVHC*AWTRGC Trigger: ACACCCCCTGGTCCAGGCCCAGCAGTGGACTTGGTG...TGCAGCTTTGCTTCTTTGCCTCTCTCTCCCTGAGGGGACCAAACCATCCCAACG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS-3UTR TCA 90 bp | CGTTGGGATGGTTTGGTCCCCTCAGGGAGAGAGAGGCAAAGAAGCAAAGCTGCACTTGTCATTGTCCGGTaGCTCGTCAGCCGAGGGCTC | + |
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Preference number: 4 (lower is better) Translates to: RWDGLVPSGRERQRSKAALVIVR*LVSRGL Trigger: GAGCCCTCGGCTGACGAGTCACCGGACAATGACAAG...TGCAGCTTTGCTTCTTTGCCTCTCTCTCCCTGAGGGGACCAAACCATCCCAACG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS-3UTR TCA 90 bp | ACGTTAACGTTGGGATGGTTTGGTCCCCTCAGGGAGAGAGAGGCAAAGAAGCAACCAGGTCCTGGGCTTTaGGCGCGTGGCACGGTTTGC | + |
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Preference number: 4 (lower is better) Translates to: TLTLGWFGPLREREAKKQPGPGL*ARGTVC Trigger: GCAAACCGTGCCACGCGCTCAAAGCCCAGGACCTGG...TTGCTTCTTTGCCTCTCTCTCCCTGAGGGGACCAAACCATCCCAACGTTAACGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS-3UTR GCA 90 bp | CGCTACTCACACAAACATAGTTTACAAAATTCACGAAAGCAGTGCGGGGGTGGGGACCAAGACCGGCACTaGCACACGGCGCGGCGAGGG | + |
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Preference number: 4 (lower is better) Translates to: RYSHKHSLQNSRKQCGGGDQDRH*HTARRG Trigger: CCCTCGCCGCGCCGTGTGGCAGTGCCGGTCTTGGTC...CCCACCCCCGCACTGCTTTCGTGAATTTTGTAAACTATGTTTGTGTGAGTAGCG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS-3UTR CCA 90 bp | CTGCAACTCAAACATAACCCACCGAAAACAAACGACAAAGAGAGGCAGGCCCGGTGTGCTGTCGGGTACTaGGGGGTGCTGGCCGAGCTG | + |
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Preference number: 4 (lower is better) Translates to: LQLKHNPPKTNDKERQARCAVGY*GVLAEL Trigger: CAGCTCGGCCAGCACCCCCCAGTACCCGACAGCACA...CCGGGCCTGCCTCTCTTTGTCGTTTGTTTTCGGTGGGTTATGTTTGAGTTGCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS-3UTR GCA 90 bp | CTGCAACTCAAACATAACCCACCGAAAACAAACGACAAAGAGAGGCAGGCCCGGCTGGAAGGTGGCGGCTaGCAGGTCCTGGGCTTTGAG | + |
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Preference number: 4 (lower is better) Translates to: LQLKHNPPKTNDKERQARLEGGG*QVLGFE Trigger: CTCAAAGCCCAGGACCTGGCAGCCGCCACCTTCCAG...CCGGGCCTGCCTCTCTTTGTCGTTTGTTTTCGGTGGGTTATGTTTGAGTTGCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS-3UTR GCA 90 bp | ACGTTAACGTTGGGATGGTTTGGTCCCCTCAGGGAGAGAGAGGCAAAGAAGCAAAGGCGGAAAAGGGGATaGCTGCCTGGAAGGTGGCGG | + |
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Preference number: 4 (lower is better) Translates to: TLTLGWFGPLREREAKKQRRKRG*LPGRWR Trigger: CCGCCACCTTCCAGGCAGGCATCCCCTTTTCCGCCT...TTGCTTCTTTGCCTCTCTCTCCCTGAGGGGACCAAACCATCCCAACGTTAACGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS-3UTR GCA 90 bp | GTGGGGGCCGGTTGGTCCTTTCTCTTTTCAAGTGACAACGTTAACGTTGGGATGGCGTTGTACTGCATGTaGTGCAGCGACTGCGCGCTG | + |
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Preference number: 4 (lower is better) Translates to: VGAGWSFLFSSDNVNVGMALYCM*CSDCAL Trigger: CAGCGCGCAGTCGCTGCAGCACATGCAGTACAACGC...CATCCCAACGTTAACGTTGTCACTTGAAAAGAGAAAGGACCAACCGGCCCCCAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS-3UTR GCA 90 bp | CGTTGGGATGGTTTGGTCCCCTCAGGGAGAGAGAGGCAAAGAAGCAAAGCTGCATGTAGGGGTTGTCGCTaGTGTCGTAGAAAGGGCTCT | + |
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Preference number: 4 (lower is better) Translates to: RWDGLVPSGRERQRSKAACRGCR*CRRKGS Trigger: AGAGCCCTTTCTACGACAGCAGCGACAACCCCTACA...TGCAGCTTTGCTTCTTTGCCTCTCTCTCCCTGAGGGGACCAAACCATCCCAACG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS-3UTR GCA 90 bp | ATTTACAACGAAGAGCGAAATTTGCCACCAGTTGTCAGAACGTGTACATGGCCACTGGCCGCCAGCCCGTaGAGGGAGTATTGGAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: IYNEERNLPPVVRTCTWPLAASP*REYWRP Trigger: GGGCCTCCAATACTCCCTGCACGGGCTGGCGGCCAG...TGGCCATGTACACGTTCTGACAACTGGTGGCAAATTTCGCTCTTCGTTGTAAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS-3UTR TCA 90 bp | ACGTTGGGATGGTTTGGTCCCCTCAGGGAGAGAGAGGCAAAGAAGCAAAGCTGCGGTCCAAGATGTCCTTaGCTGAAAACCCCGTCTTTG | + |
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Preference number: 4 (lower is better) Translates to: TLGWFGPLREREAKKQSCGPRCP*LKTPSL Trigger: CAAAGACGGGGTTTTCAGTCAAGGACATCTTGGACC...GCAGCTTTGCTTCTTTGCCTCTCTCTCCCTGAGGGGACCAAACCATCCCAACGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS-3UTR CCA 90 bp | AAAAAGGTTGAATGCCATCAACCTTTTCATCACACTCCAAGGGACAAGCACCAAGGAGGCCCTCGGTGCTaGCCAGCCAGCGAGTGTAGG | + |
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Preference number: 4 (lower is better) Translates to: KKVECHQPFHHTPRDKHQGGPRC*PASECR Trigger: CCTACACTCGCTGGCTGGCCAGCACCGAGGGCCTCC...TTGGTGCTTGTCCCTTGGAGTGTGATGAAAAGGTTGATGGCATTCAACCTTTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109970.5 |
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| CDS-3UTR CCA 90 bp | ATACAGGCCCATCCAGAACGTCATTTGGCAACGATCACTAGCGATATTTACAACGTCCACTGCTGGGCCTaGACCAGGGGGTGTGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: IQAHPERHLATITSDIYNVHCWA*TRGCAV Trigger: GACAGCACACCCCCTGGTCCAGGCCCAGCAGTGGAC...GTTGTAAATATCGCTAGTGATCGTTGCCAAATGACGTTCTGGATGGGCCTGTAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| 3UTR CAA 72 bp | GGCCCGGTGGGGATACAGGCCCATCCAGAACGTCATTaGGCAACGATCACTAGCGATATTTACAACGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: GPVGIQAHPERH*ATITSDIYNEE Trigger: CTCTTCGTTGTAAATATCGCTAGTGATCGTTGCCAAATGACGTTCTGGATGGGCCTGTATCCCCACCGGGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS-3UTR GCA 90 bp | ATACAGGCCCATCCAGAACGTCATTTGGCAACGATCACTAGCGATATTTACAACATTGGAGGCCCTCGGTaGTGGCCAGCCAGCGAGTGT | + |
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Preference number: 4 (lower is better) Translates to: IQAHPERHLATITSDIYNIGGPR*WPASEC Trigger: ACACTCGCTGGCTGGCCAGCACCGAGGGCCTCCAAT...GTTGTAAATATCGCTAGTGATCGTTGCCAAATGACGTTCTGGATGGGCCTGTAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS-3UTR GCA 90 bp | GGCAGACGAAAGAAAAAGGTTGAATGCCATCAACCTTTTCATCACACTCCAAGGATTGGAGGCCCTCGGTaGTGGCCAGCCAGCGAGTGT | + |
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Preference number: 4 (lower is better) Translates to: GRRKKKVECHQPFHHTPRIGGPR*WPASEC Trigger: ACACTCGCTGGCTGGCCAGCACCGAGGGCCTCCAAT...CCTTGGAGTGTGATGAAAAGGTTGATGGCATTCAACCTTTTTCTTTCGTCTGCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109970.5 |
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| CDS-3UTR CCA 90 bp | AAAAAGGTTGAATGCCATCAACCTTTTCATCACACTCCAAGGGACAAGCACCAATTCGCTCTCCTCCTCTaGCCCTTCGGCCACCGAGCC | + |
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Preference number: 4 (lower is better) Translates to: KKVECHQPFHHTPRDKHQFALLL*PFGHRA Trigger: GGCTCGGTGGCCGAAGGGCCAGAGGAGGAGAGCGAA...TTGGTGCTTGTCCCTTGGAGTGTGATGAAAAGGTTGATGGCATTCAACCTTTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109970.5 |
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| CDS-3UTR CCA 90 bp | TTACAACGAAGAGCGAAATTTGCCACCAGTTGTCAGAACGTGTACATGGCCATATGGGCTTTGAGCGCGTaGCACGGTTTGCCGTCCCTG | + |
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Preference number: 4 (lower is better) Translates to: LQRRAKFATSCQNVYMAIWALSA*HGLPSL Trigger: CAGGGACGGCAAACCGTGCCACGCGCTCAAAGCCCA...TATGGCCATGTACACGTTCTGACAACTGGTGGCAAATTTCGCTCTTCGTTGTAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS-3UTR TCA 90 bp | AAGGTTGAATGCCATCAACCTTTTCATCACACTCCAAGGGACAAGCACCAAGCCCCTCAAATCCACAGATaGCCAGATTGTGCTCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: KVECHQPFHHTPRDKHQAPQIHR*PDCAPR Trigger: CCTGGGAGCACAATCTGGTCATCTGTGGATTTGAGG...GGCTTGGTGCTTGTCCCTTGGAGTGTGATGAAAAGGTTGATGGCATTCAACCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109970.5 |
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| CDS-3UTR GCA 90 bp | GGCAGACGAAAGAAAAAGGTTGAATGCCATCAACCTTTTCATCACACTCCAAGGCCGTCGGTTTTGAAATaGTTTCTCCGCCCGGGCACG | + |
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Preference number: 4 (lower is better) Translates to: GRRKKKVECHQPFHHTPRPSVLK*FLRPGT Trigger: CGTGCCCGGGCGGAGAAAGCATTTCAAAACCGACGG...CCTTGGAGTGTGATGAAAAGGTTGATGGCATTCAACCTTTTTCTTTCGTCTGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000109970.5 |
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| CDS-3UTR CCA 90 bp | TCACACTCCAAGGGACAAGCACCAAGCCAAAGAATTGTAATTCTTTCTTTGGCAGTCAGCCGAGGGCTCTaGGGATTTGGAGCTCGAGTC | + |
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Preference number: 4 (lower is better) Translates to: SHSKGQAPSQRIVILSLAVSRGL*GFGARV Trigger: GACTCGAGCTCCAAATCCCCAGAGCCCTCGGCTGAC...TGCCAAAGAAAGAATTACAATTCTTTGGCTTGGTGCTTGTCCCTTGGAGTGTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109970.5 |
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| CDS-3UTR CCA 90 bp | ATACAGGCCCATCCAGAACGTCATTTGGCAACGATCACTAGCGATATTTACAACCTGGCCGAGCTGTACTaGGCGTTGTACTGCATGTGC | + |
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Preference number: 4 (lower is better) Translates to: IQAHPERHLATITSDIYNLAELY*ALYCMC Trigger: GCACATGCAGTACAACGCCCAGTACAGCTCGGCCAG...GTTGTAAATATCGCTAGTGATCGTTGCCAAATGACGTTCTGGATGGGCCTGTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| 3UTR CAA 72 bp | GTTGGTCCTTTCTCTTTTCAAGTGACAACGTTAACGTaGGGATGGTTTGGTCCCCTCAGGGAGAGAGAGGCA | + |
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Preference number: 4 (lower is better) Translates to: VGPFSFQVTTLT*GWFGPLREREA Trigger: TGCCTCTCTCTCCCTGAGGGGACCAAACCATCCCAACGTTAACGTTGTCACTTGAAAAGAGAAAGGACCAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS-3UTR TCA 90 bp | ACGTTAACGTTGGGATGGTTTGGTCCCCTCAGGGAGAGAGAGGCAAAGAAGCAACAAGATGTCCTTGACTaGAAACCCCGTCTTTGTGTT | + |
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Preference number: 4 (lower is better) Translates to: TLTLGWFGPLREREAKKQQDVLD*KPRLCV Trigger: AACACAAAGACGGGGTTTTCAGTCAAGGACATCTTG...TTGCTTCTTTGCCTCTCTCTCCCTGAGGGGACCAAACCATCCCAACGTTAACGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS-3UTR GCA 90 bp | ATACAGGCCCATCCAGAACGTCATTTGGCAACGATCACTAGCGATATTTACAACTACTGGGCGTTGTACTaGATGTGCTGCAGCGACTGC | + |
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Preference number: 4 (lower is better) Translates to: IQAHPERHLATITSDIYNYWALY*MCCSDC Trigger: GCAGTCGCTGCAGCACATGCAGTACAACGCCCAGTA...GTTGTAAATATCGCTAGTGATCGTTGCCAAATGACGTTCTGGATGGGCCTGTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS-3UTR GCA 90 bp | CTCCAAGGGACAAGCACCAAGCCAAAGAATTGTAATTCTTTCTTTGGCATTGTGTGTAGGGGTTGTCGCTaGTGTCGTAGAAAGGGCTCT | + |
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Preference number: 4 (lower is better) Translates to: LQGTSTKPKNCNSFFGIVCRGCR*CRRKGS Trigger: AGAGCCCTTTCTACGACAGCAGCGACAACCCCTACA...CACAATGCCAAAGAAAGAATTACAATTCTTTGGCTTGGTGCTTGTCCCTTGGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109970.5 |
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| CDS-3UTR TCA 90 bp | TCACACTCCAAGGGACAAGCACCAAGCCAAAGAATTGTAATTCTTTCTTTGGCAGGTCCAAGATGTCCTTaGCTGAAAACCCCGTCTTTG | + |
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Preference number: 4 (lower is better) Translates to: SHSKGQAPSQRIVILSLAGPRCP*LKTPSL Trigger: CAAAGACGGGGTTTTCAGTCAAGGACATCTTGGACC...TGCCAAAGAAAGAATTACAATTCTTTGGCTTGGTGCTTGTCCCTTGGAGTGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109970.5 |
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| 3UTR CAA 72 bp | ACAGTTGACATCCACAAGGCAGACGAAAGAAAAAGGTaGAATGCCATCAACCTTTTCATCACACTCCAAGGG | + |
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Preference number: 4 (lower is better) Translates to: TVDIHKADERKR*NAINLFITLQG Trigger: CCCTTGGAGTGTGATGAAAAGGTTGATGGCATTCAACCTTTTTCTTTCGTCTGCCTTGTGGATGTCAACTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109970.5 |
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| CDS-3UTR TCA 90 bp | CCTGGCACAGGAAACATTTTGAAGAGGTGGAAATATATGCTTCAATTGTGGTGGCAAGATGTCCTTGACTaGAAACCCCGTCTTTGTGTT | + |
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Preference number: 4 (lower is better) Translates to: PGTGNILKRWKYMLQLWWQDVLD*KPRLCV Trigger: AACACAAAGACGGGGTTTTCAGTCAAGGACATCTTG...CCACCACAATTGAAGCATATATTTCCACCTCTTCAAAATGTTTCCTGTGCCAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109970.5 |
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| 3UTR CAA 72 bp | GCGATATTTACAACGAAGAGCGAAATTTGCCACCAGTaGTCAGAACGTGTACATGGCCATAAATATTTAGCA | + |
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Preference number: 4 (lower is better) Translates to: AIFTTKSEICHQ*SERVHGHKYLA Trigger: TGCTAAATATTTATGGCCATGTACACGTTCTGACAACTGGTGGCAAATTTCGCTCTTCGTTGTAAATATCGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS GCA 90 bp | AAAGGGCTCTTAAGGGGCAGGCTCTGCACAGCGTCCAGGGCGCCCTaGCCCAGCGGCCCGGCCCTCTTGGCGGGCTCCGGCCCTTCGCTC | + |
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Preference number: 5 (lower is better) Translates to: KGLLRGRLCTASRAP*PSGPALLAGSGPSL Trigger: GAGCGAAGGGCCGGAGCCCGCCAAGAGGGCCGGGCCGCTGGGGCAGGGCGCCCTGGACGCTGTGCAGAGCCTGCCCCTTAAGAGCCCTTT 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067075.7 ENSMUST00000109970.5 |
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| CDS CCA 90 bp | CGGCCCGGCCCTCTTGGCGGGCTCCGGCCCTTCGCTCTCCTCCTCTaGCCCTTCGGCCACCGAGCCGTCTTCATCGTTGGTGTCCGGAAG | + |
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Preference number: 5 (lower is better) Translates to: RPGPLGGLRPFALLL*PFGHRAVFIVGVRK Trigger: CTTCCGGACACCAACGATGAAGACGGCTCGGTGGCCGAAGGGCCAGAGGAGGAGAGCGAAGGGCCGGAGCCCGCCAAGAGGGCCGGGCCG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067075.7 ENSMUST00000109970.5 |
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| CDS GCA 90 bp | GAGCGCTGGCCGCCAGCCCGTGCAGGGAGTATTGGAGGCCCTCGGTaGTGGCCAGCCAGCGAGTGTAGGGGTTGTCGCTGCTGTCGTAGA | + |
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Preference number: 5 (lower is better) Translates to: ERWPPARAGSIGGPR*WPASECRGCRCCRR Trigger: TCTACGACAGCAGCGACAACCCCTACACTCGCTGGCTGGCCAGCACCGAGGGCCTCCAATACTCCCTGCACGGGCTGGCGGCCAGCGCTC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067075.7 ENSMUST00000109970.5 |
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| CDS-3UTR CAA 90 bp | AACCGTGGTAAGGATCGAGTCCTCCTCGCCACCGGCGCCGCTGGGGTGGGGCCAGAGGGCTCTGGGGATTaGGAGCTCGAGTCTTGGGGG | + |
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Preference number: 5 (lower is better) Translates to: NRGKDRVLLATGAAGVGPEGSGD*ELESWG Trigger: CCCCCAAGACTCGAGCTCCAAATCCCCAGAGCCCTC...TGGCCCCACCCCAGCGGCGCCGGTGGCGAGGAGGACTCGATCCTTACCACGGTT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS CCA 90 bp | CGCTGGCCGCCAGCCCGTGCAGGGAGTATTGGAGGCCCTCGGTGCTaGCCAGCCAGCGAGTGTAGGGGTTGTCGCTGCTGTCGTAGAAAG | + |
|
Preference number: 5 (lower is better) Translates to: RWPPARAGSIGGPRC*PASECRGCRCCRRK Trigger: CTTTCTACGACAGCAGCGACAACCCCTACACTCGCTGGCTGGCCAGCACCGAGGGCCTCCAATACTCCCTGCACGGGCTGGCGGCCAGCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067075.7 ENSMUST00000109970.5 |
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| CDS CCA 90 bp | CAAGTCCACTGCTGGGCCTGGACCAGGGGGTGTGCTGTCGGGTACTaGGGGGTGCTGGCCGAGCTGTACTGGGCGTTGTACTGCATGTGC | + |
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Preference number: 5 (lower is better) Translates to: QVHCWAWTRGCAVGY*GVLAELYWALYCMC Trigger: GCACATGCAGTACAACGCCCAGTACAGCTCGGCCAGCACCCCCCAGTACCCGACAGCACACCCCCTGGTCCAGGCCCAGCAGTGGACTTG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS-3UTR CAA 90 bp | ATCGAAAGCTTTCAGCGCCCGGCGCTCTTGGGGAAACCACGTGAAACTGCTGAGGCCAGGTCCTGGGCTTaGAGCGCGTGGCACGGTTTG | + |
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Preference number: 5 (lower is better) Translates to: IESFQRPALLGKPRETAEARSWA*SAWHGL Trigger: CAAACCGTGCCACGCGCTCAAAGCCCAGGACCTGGC...CTCAGCAGTTTCACGTGGTTTCCCCAAGAGCGCCGGGCGCTGAAAGCTTTCGAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS-3UTR CAA 90 bp | CTGCAACTCAAACATAACCCACCGAAAACAAACGACAAAGAGAGGCAGGCCCGGCCCGTGCAGGGAGTATaGGAGGCCCTCGGTGCTGGC | + |
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Preference number: 5 (lower is better) Translates to: LQLKHNPPKTNDKERQARPVQGV*EALGAG Trigger: GCCAGCACCGAGGGCCTCCAATACTCCCTGCACGGG...CCGGGCCTGCCTCTCTTTGTCGTTTGTTTTCGGTGGGTTATGTTTGAGTTGCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS-3UTR CAA 90 bp | ACGTTAACGTTGGGATGGTTTGGTCCCCTCAGGGAGAGAGAGGCAAAGAAGCAAAGCGCGTGGCACGGTTaGCCGTCCCTGACCAAGACC | + |
|
Preference number: 5 (lower is better) Translates to: TLTLGWFGPLREREAKKQSAWHG*PSLTKT Trigger: GGTCTTGGTCAGGGACGGCAAACCGTGCCACGCGCT...TTGCTTCTTTGCCTCTCTCTCCCTGAGGGGACCAAACCATCCCAACGTTAACGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS GCA 90 bp | GGGCACCGCAGCTTCGATCCTGGCATCCATCCGTCGGTTTTGAAATaGTTTCTCCGCCCGGGCACGTTTCATCTTGTAGCGATGGTTCTG | + |
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Preference number: 5 (lower is better) Translates to: GHRSFDPGIHPSVLK*FLRPGTFHLVAMVL Trigger: CAGAACCATCGCTACAAGATGAAACGTGCCCGGGCGGAGAAAGCATTTCAAAACCGACGGATGGATGCCAGGATCGAAGCTGCGGTGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109970.5 |
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| CDS GCA 90 bp | CAGTCGCCCGACCTGAAATTGTTTTCTTATCCAATCGCTCCACCTTaGGGACACTATGGGCACCGCAGCTTCGATCCTGGCATCCATCCG | + |
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Preference number: 5 (lower is better) Translates to: QSPDLKLFSYPIAPP*GHYGHRSFDPGIHP Trigger: CGGATGGATGCCAGGATCGAAGCTGCGGTGCCCATAGTGTCCGCAAGGTGGAGCGATTGGATAAGAAAACAATTTCAGGTCGGGCGACTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109970.5 |
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| CDS-3UTR CAA 90 bp | AAGGTTGAATGCCATCAACCTTTTCATCACACTCCAAGGGACAAGCACCAAGCCCCGCCCTGGGTCTCCTaGTCATTGTCCGGTGACTCG | + |
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Preference number: 5 (lower is better) Translates to: KVECHQPFHHTPRDKHQAPPWVS*SLSGDS Trigger: CGAGTCACCGGACAATGACAAGGAGACCCAGGGCGG...GGCTTGGTGCTTGTCCCTTGGAGTGTGATGAAAAGGTTGATGGCATTCAACCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109970.5 |
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| CDS-3UTR CAA 90 bp | CTCCAAGGGACAAGCACCAAGCCAAAGAATTGTAATTCTTTCTTTGGCATTGTGCCCGTGCAGGGAGTATaGGAGGCCCTCGGTGCTGGC | + |
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Preference number: 5 (lower is better) Translates to: LQGTSTKPKNCNSFFGIVPVQGV*EALGAG Trigger: GCCAGCACCGAGGGCCTCCAATACTCCCTGCACGGG...CACAATGCCAAAGAAAGAATTACAATTCTTTGGCTTGGTGCTTGTCCCTTGGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109970.5 |
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| CDS-3UTR CAA 90 bp | TTACAACGAAGAGCGAAATTTGCCACCAGTTGTCAGAACGTGTACATGGCCATACCGCCCTGGGTCTCCTaGTCATTGTCCGGTGACTCG | + |
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Preference number: 5 (lower is better) Translates to: LQRRAKFATSCQNVYMAIPPWVS*SLSGDS Trigger: CGAGTCACCGGACAATGACAAGGAGACCCAGGGCGG...TATGGCCATGTACACGTTCTGACAACTGGTGGCAAATTTCGCTCTTCGTTGTAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS-3UTR CAA 90 bp | CTGCAACTCAAACATAACCCACCGAAAACAAACGACAAAGAGAGGCAGGCCCGGAGGTCCAAGATGTCCTaGACTGAAAACCCCGTCTTT | + |
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Preference number: 5 (lower is better) Translates to: LQLKHNPPKTNDKERQARRSKMS*TENPVF Trigger: AAAGACGGGGTTTTCAGTCAAGGACATCTTGGACCT...CCGGGCCTGCCTCTCTTTGTCGTTTGTTTTCGGTGGGTTATGTTTGAGTTGCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS-3UTR CAA 90 bp | TTACAACGAAGAGCGAAATTTGCCACCAGTTGTCAGAACGTGTACATGGCCATATGGGTCTCCTTGTCATaGTCCGGTGACTCGTCAGCC | + |
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Preference number: 5 (lower is better) Translates to: LQRRAKFATSCQNVYMAIWVSLS*SGDSSA Trigger: GGCTGACGAGTCACCGGACAATGACAAGGAGACCCA...TATGGCCATGTACACGTTCTGACAACTGGTGGCAAATTTCGCTCTTCGTTGTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS-3UTR CAA 90 bp | GGCAGACGAAAGAAAAAGGTTGAATGCCATCAACCTTTTCATCACACTCCAAGGTGGGTCTCCTTGTCATaGTCCGGTGACTCGTCAGCC | + |
|
Preference number: 5 (lower is better) Translates to: GRRKKKVECHQPFHHTPRWVSLS*SGDSSA Trigger: GGCTGACGAGTCACCGGACAATGACAAGGAGACCCA...CCTTGGAGTGTGATGAAAAGGTTGATGGCATTCAACCTTTTTCTTTCGTCTGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109970.5 |
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| CDS-3UTR CAA 90 bp | CTCCAAGGGACAAGCACCAAGCCAAAGAATTGTAATTCTTTCTTTGGCATTGTGAGGTCCAAGATGTCCTaGACTGAAAACCCCGTCTTT | + |
|
Preference number: 5 (lower is better) Translates to: LQGTSTKPKNCNSFFGIVRSKMS*TENPVF Trigger: AAAGACGGGGTTTTCAGTCAAGGACATCTTGGACCT...CACAATGCCAAAGAAAGAATTACAATTCTTTGGCTTGGTGCTTGTCCCTTGGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109970.5 |
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| CDS CAA 90 bp | AAGGTGGCGGCTGCCAGGTCCTGGGCTTTGAGCGCGTGGCACGGTTaGCCGTCCCTGACCAAGACCGGCACTGCCACACGGCGCGGCGAG | + |
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Preference number: 6 (lower is better) Translates to: KVAAARSWALSAWHG*PSLTKTGTATRRGE Trigger: CTCGCCGCGCCGTGTGGCAGTGCCGGTCTTGGTCAGGGACGGCAAACCGTGCCACGCGCTCAAAGCCCAGGACCTGGCAGCCGCCACCTT 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS GCA 72 bp | CCGCCAGCCCGTGCAGGGAGTATTGGAGGCCCTCGGTaGTGGCCAGCCAGCGAGTGTAGGGGTTGTCGCTGC | + |
|
Preference number: 6 (lower is better) Translates to: PPARAGSIGGPR*WPASECRGCRC Trigger: GCAGCGACAACCCCTACACTCGCTGGCTGGCCAGCACCGAGGGCCTCCAATACTCCCTGCACGGGCTGGCGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067075.7 ENSMUST00000109970.5 |
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| CDS GCA 72 bp | GCTGCAGCGACTGCGCGCTGTAGGCGGAAAAGGGGATaGCTGCCTGGAAGGTGGCGGCTGCCAGGTCCTGGG | + |
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Preference number: 6 (lower is better) Translates to: AAATARCRRKRG*LPGRWRLPGPG Trigger: CCCAGGACCTGGCAGCCGCCACCTTCCAGGCAGGCATCCCCTTTTCCGCCTACAGCGCGCAGTCGCTGCAGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS CCA 72 bp | GGGATGCCTGCCTGGAAGGTGGCGGCTGCCAGGTCCTaGGCTTTGAGCGCGTGGCACGGTTTGCCGTCCCTG | + |
|
Preference number: 6 (lower is better) Translates to: GMPAWKVAAARS*ALSAWHGLPSL Trigger: CAGGGACGGCAAACCGTGCCACGCGCTCAAAGCCCAGGACCTGGCAGCCGCCACCTTCCAGGCAGGCATCCC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS CCA 72 bp | CCTCTTGGCGGGCTCCGGCCCTTCGCTCTCCTCCTCTaGCCCTTCGGCCACCGAGCCGTCTTCATCGTTGGT | + |
|
Preference number: 6 (lower is better) Translates to: PLGGLRPFALLL*PFGHRAVFIVG Trigger: ACCAACGATGAAGACGGCTCGGTGGCCGAAGGGCCAGAGGAGGAGAGCGAAGGGCCGGAGCCCGCCAAGAGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067075.7 ENSMUST00000109970.5 |
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| CDS CCA 72 bp | TGCTGGGCCTGGACCAGGGGGTGTGCTGTCGGGTACTaGGGGGTGCTGGCCGAGCTGTACTGGGCGTTGTAC | + |
|
Preference number: 6 (lower is better) Translates to: CWAWTRGCAVGY*GVLAELYWALY Trigger: GTACAACGCCCAGTACAGCTCGGCCAGCACCCCCCAGTACCCGACAGCACACCCCCTGGTCCAGGCCCAGCA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS GCA 72 bp | CAGCGACTGCGCGCTGTAGGCGGAAAAGGGGATGCCTaGCTGGAAGGTGGCGGCTGCCAGGTCCTGGGCTTT | + |
|
Preference number: 6 (lower is better) Translates to: QRLRAVGGKGDA*LEGGGCQVLGF Trigger: AAAGCCCAGGACCTGGCAGCCGCCACCTTCCAGGCAGGCATCCCCTTTTCCGCCTACAGCGCGCAGTCGCTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067075.7 |
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| CDS CCA 72 bp | CCAGCCCGTGCAGGGAGTATTGGAGGCCCTCGGTGCTaGCCAGCCAGCGAGTGTAGGGGTTGTCGCTGCTGT | + |
|
Preference number: 6 (lower is better) Translates to: PARAGSIGGPRC*PASECRGCRCC Trigger: ACAGCAGCGACAACCCCTACACTCGCTGGCTGGCCAGCACCGAGGGCCTCCAATACTCCCTGCACGGGCTGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000067075.7 ENSMUST00000109970.5 |
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| CDS CAA 90 bp | TCGCTCTCCTCCTCTGGCCCTTCGGCCACCGAGCCGTCTTCATCGTaGGTGTCCGGAAGGTCCAAGATGTCCTTGACTGAAAACCCCGTC | + |
|
Preference number: 6 (lower is better) Translates to: SLSSSGPSATEPSSS*VSGRSKMSLTENPV Trigger: GACGGGGTTTTCAGTCAAGGACATCTTGGACCTTCCGGACACCAACGATGAAGACGGCTCGGTGGCCGAAGGGCCAGAGGAGGAGAGCGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000067075.7 ENSMUST00000109970.5 |
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| CDS CAA 72 bp | TCCTCTGGCCCTTCGGCCACCGAGCCGTCTTCATCGTaGGTGTCCGGAAGGTCCAAGATGTCCTTGACTGAA | + |
|
Preference number: 6 (lower is better) Translates to: SSGPSATEPSSS*VSGRSKMSLTE Trigger: TTCAGTCAAGGACATCTTGGACCTTCCGGACACCAACGATGAAGACGGCTCGGTGGCCGAAGGGCCAGAGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000067075.7 ENSMUST00000109970.5 |
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| CDS CAA 90 bp | CACTATGGGCACCGCAGCTTCGATCCTGGCATCCATCCGTCGGTTTaGAAATGCTTTCTCCGCCCGGGCACGTTTCATCTTGTAGCGATG | + |
|
Preference number: 6 (lower is better) Translates to: HYGHRSFDPGIHPSV*KCFLRPGTFHLVAM Trigger: CATCGCTACAAGATGAAACGTGCCCGGGCGGAGAAAGCATTTCAAAACCGACGGATGGATGCCAGGATCGAAGCTGCGGTGCCCATAGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109970.5 |
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| CDS GCA 72 bp | AGCTTCGATCCTGGCATCCATCCGTCGGTTTTGAAATaGTTTCTCCGCCCGGGCACGTTTCATCTTGTAGCG | + |
|
Preference number: 6 (lower is better) Translates to: SFDPGIHPSVLK*FLRPGTFHLVA Trigger: CGCTACAAGATGAAACGTGCCCGGGCGGAGAAAGCATTTCAAAACCGACGGATGGATGCCAGGATCGAAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109970.5 |
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| CDS TCA 72 bp | AATGGACTTTACCCAGACATCCCTCAAATCCACAGATaGCCAGATTGTGCTCCCAGGCCTGAGTCAGTCGCC | + |
|
Preference number: 6 (lower is better) Translates to: NGLYPDIPQIHR*PDCAPRPESVA Trigger: GGCGACTGACTCAGGCCTGGGAGCACAATCTGGTCATCTGTGGATTTGAGGGATGTCTGGGTAAAGTCCATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109970.5 |
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| CDS GCA 72 bp | GACCTGAAATTGTTTTCTTATCCAATCGCTCCACCTTaGGGACACTATGGGCACCGCAGCTTCGATCCTGGC | + |
|
Preference number: 6 (lower is better) Translates to: DLKLFSYPIAPP*GHYGHRSFDPG Trigger: GCCAGGATCGAAGCTGCGGTGCCCATAGTGTCCGCAAGGTGGAGCGATTGGATAAGAAAACAATTTCAGGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109970.5 |
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| CDS TCA 72 bp | CTTCATCGTTGGTGTCCGGAAGGTCCAAGATGTCCTTaGCTGAAAACCCCGTCTTTGTGTTGGTCAGCGACA | + |
|
Preference number: 6 (lower is better) Translates to: LHRWCPEGPRCP*LKTPSLCWSAT Trigger: TGTCGCTGACCAACACAAAGACGGGGTTTTCAGTCAAGGACATCTTGGACCTTCCGGACACCAACGATGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000067075.7 ENSMUST00000109970.5 |
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| CDS CAA 72 bp | TCTTCATCGTTGGTGTCCGGAAGGTCCAAGATGTCCTaGACTGAAAACCCCGTCTTTGTGTTGGTCAGCGAC | + |
|
Preference number: 6 (lower is better) Translates to: SSSLVSGRSKMS*TENPVFVLVSD Trigger: GTCGCTGACCAACACAAAGACGGGGTTTTCAGTCAAGGACATCTTGGACCTTCCGGACACCAACGATGAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000067075.7 ENSMUST00000109970.5 |
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