RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NKX2-2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027434

Ensembl transcript IDs: ENSMUST00000067075.7, ENSMUST00000109970.5

Found 90 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAGAGGCAGGCCCGGTGGGGATACAGGCCCATCCAGAACGTCATTTaGCAACGATCACTAGCGATATTTACAACGAAGAGCGAAATTTGC +
Preference number: 1 (lower is better)
Translates to: ERQARWGYRPIQNVI*QRSLAIFTTKSEIC
Trigger: GCAAATTTCGCTCTTCGTTGTAAATATCGCTAGTGATCGTTGCCAAATGACGTTCTGGATGGGCCTGTATCCCCACCGGGCCTGCCTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
3UTR CCA 90 bp CCGGTTGGTCCTTTCTCTTTTCAAGTGACAACGTTAACGTTGGGATaGTTTGGTCCCCTCAGGGAGAGAGAGGCAAAGAAGCAAAGCTGC +
Preference number: 1 (lower is better)
Translates to: PVGPFSFQVTTLTLG*FGPLREREAKKQSC
Trigger: GCAGCTTTGCTTCTTTGCCTCTCTCTCCCTGAGGGGACCAAACCATCCCAACGTTAACGTTGTCACTTGAAAAGAGAAAGGACCAACCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
3UTR CCA 90 bp AAACATAACCCACCGAAAACAAACGACAAAGAGAGGCAGGCCCGGTaGGGATACAGGCCCATCCAGAACGTCATTTGGCAACGATCACTA +
Preference number: 1 (lower is better)
Translates to: KHNPPKTNDKERQAR*GYRPIQNVIWQRSL
Trigger: TAGTGATCGTTGCCAAATGACGTTCTGGATGGGCCTGTATCCCCACCGGGCCTGCCTCTCTTTGTCGTTTGTTTTCGGTGGGTTATGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
3UTR TCA 90 bp CTGCCACTCGGGGAGGCACAGGCAACCTCCCTGTGCCTCCTCAACTaGGTCGAAAGTCAGACTCGACTCTATAATAATAATTATAATAAT +
Preference number: 1 (lower is better)
Translates to: LPLGEAQATSLCLLN*VESQTRLYNNNYNN
Trigger: ATTATTATAATTATTATTATAGAGTCGAGTCTGACTTTCGACTCAGTTGAGGAGGCACAGGGAGGTTGCCTGTGCCTCCCCGAGTGGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
3UTR TCA 90 bp GGAAATATATGCTTCAATTGTGGTGGTGACAGTAACAGAGACAGTTaGCATCCACAAGGCAGACGAAAGAAAAAGGTTGAATGCCATCAA +
Preference number: 1 (lower is better)
Translates to: GNICFNCGGDSNRDS*HPQGRRKKKVECHQ
Trigger: TTGATGGCATTCAACCTTTTTCTTTCGTCTGCCTTGTGGATGTCAACTGTCTCTGTTACTGTCACCACCACAATTGAAGCATATATTTCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109970.5
3UTR GCA 90 bp ATTTGGCAACGATCACTAGCGATATTTACAACGAAGAGCGAAATTTaGCACCAGTTGTCAGAACGTGTACATGGCCATAAATATTTAGCA +
Preference number: 1 (lower is better)
Translates to: IWQRSLAIFTTKSEI*HQLSERVHGHKYLA
Trigger: TGCTAAATATTTATGGCCATGTACACGTTCTGACAACTGGTGGCAAATTTCGCTCTTCGTTGTAAATATCGCTAGTGATCGTTGCCAAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
3UTR CAA 90 bp AGAGAGGCAGGCCCGGTGGGGATACAGGCCCATCCAGAACGTCATTaGGCAACGATCACTAGCGATATTTACAACGAAGAGCGAAATTTG +
Preference number: 2 (lower is better)
Translates to: REAGPVGIQAHPERH*ATITSDIYNEERNL
Trigger: CAAATTTCGCTCTTCGTTGTAAATATCGCTAGTGATCGTTGCCAAATGACGTTCTGGATGGGCCTGTATCCCCACCGGGCCTGCCTCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
3UTR-3UTR CCA 90 bp ATTTACAACGAAGAGCGAAATTTGCCACCAGTTGTCAGAACGTGTACATGGCCAACGTTAACGTTGGGATaGTTTGGTCCCCTCAGGGAG +
Preference number: 2 (lower is better)
Translates to: IYNEERNLPPVVRTCTWPTLTLG*FGPLRE
Trigger: CTCCCTGAGGGGACCAAACCATCCCAACGTTAACGT...TGGCCATGTACACGTTCTGACAACTGGTGGCAAATTTCGCTCTTCGTTGTAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
3UTR CAA 90 bp GTAACAGAGACAGTTGACATCCACAAGGCAGACGAAAGAAAAAGGTaGAATGCCATCAACCTTTTCATCACACTCCAAGGGACAAGCACC +
Preference number: 2 (lower is better)
Translates to: VTETVDIHKADERKR*NAINLFITLQGTST
Trigger: GGTGCTTGTCCCTTGGAGTGTGATGAAAAGGTTGATGGCATTCAACCTTTTTCTTTCGTCTGCCTTGTGGATGTCAACTGTCTCTGTTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109970.5
3UTR-3UTR TCA 90 bp CCTGGCACAGGAAACATTTTGAAGAGGTGGAAATATATGCTTCAATTGTGGTGGACGAAAGAAAAAGGTTaGATGCCATCAACCTTTTCA +
Preference number: 2 (lower is better)
Translates to: PGTGNILKRWKYMLQLWWTKEKG*MPSTFS
Trigger: TGAAAAGGTTGATGGCATTCAACCTTTTTCTTTCGT...CCACCACAATTGAAGCATATATTTCCACCTCTTCAAAATGTTTCCTGTGCCAGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000109970.5
3UTR-3UTR TCA 90 bp ATTTGCCACCAGTTGTCAGAACGTGTACATGGCCATAAATATTTAGCATTTTCTTTGCTTTTAGAAGGCTaGCAATATCGCTACTCACAC +
Preference number: 2 (lower is better)
Translates to: ICHQLSERVHGHKYLAFSLLLEG*QYRYSH
Trigger: GTGTGAGTAGCGATATTGTCAGCCTTCTAAAAGCAA...AGAAAATGCTAAATATTTATGGCCATGTACACGTTCTGACAACTGGTGGCAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
3UTR CAA 90 bp CGATCACTAGCGATATTTACAACGAAGAGCGAAATTTGCCACCAGTaGTCAGAACGTGTACATGGCCATAAATATTTAGCATTTTCTTAT +
Preference number: 2 (lower is better)
Translates to: RSLAIFTTKSEICHQ*SERVHGHKYLAFSY
Trigger: ATAAGAAAATGCTAAATATTTATGGCCATGTACACGTTCTGACAACTGGTGGCAAATTTCGCTCTTCGTTGTAAATATCGCTAGTGATCG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
3UTR CCA 72 bp AGGATCGAGTCCTCCTCGCCACCGGCGCCGCTGGGGTaGGGCCAGGGCCTAAGGCCTCCAGTCTTGGAGGGG +
Preference number: 3 (lower is better)
Translates to: RIESSSPPAPLG*GQGLRPPVLEG
Trigger: CCCCTCCAAGACTGGAGGCCTTAGGCCCTGGCCCCACCCCAGCGGCGCCGGTGGCGAGGAGGACTCGATCCT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
3UTR CCA 72 bp CCACCGAAAACAAACGACAAAGAGAGGCAGGCCCGGTaGGGATACAGGCCCATCCAGAACGTCATTTGGCAA +
Preference number: 3 (lower is better)
Translates to: PPKTNDKERQAR*GYRPIQNVIWQ
Trigger: TTGCCAAATGACGTTCTGGATGGGCCTGTATCCCCACCGGGCCTGCCTCTCTTTGTCGTTTGTTTTCGGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
3UTR CCA 72 bp GCCCGGTGGGGATACAGGCCCATCCAGAACGTCATTTaGCAACGATCACTAGCGATATTTACAACGAAGAGC +
Preference number: 3 (lower is better)
Translates to: ARWGYRPIQNVI*QRSLAIFTTKS
Trigger: GCTCTTCGTTGTAAATATCGCTAGTGATCGTTGCCAAATGACGTTCTGGATGGGCCTGTATCCCCACCGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
3UTR CCA 72 bp CTCTTTTCAAGTGACAACGTTAACGTTGGGATGGTTTaGTCCCCTCAGGGAGAGAGAGGCAAAGAAGCAAAG +
Preference number: 3 (lower is better)
Translates to: LFSSDNVNVGMV*SPQGERGKEAK
Trigger: CTTTGCTTCTTTGCCTCTCTCTCCCTGAGGGGACCAAACCATCCCAACGTTAACGTTGTCACTTGAAAAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
3UTR CCA 72 bp CCTTTCTCTTTTCAAGTGACAACGTTAACGTTGGGATaGTTTGGTCCCCTCAGGGAGAGAGAGGCAAAGAAG +
Preference number: 3 (lower is better)
Translates to: PFSFQVTTLTLG*FGPLREREAKK
Trigger: CTTCTTTGCCTCTCTCTCCCTGAGGGGACCAAACCATCCCAACGTTAACGTTGTCACTTGAAAAGAGAAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
3UTR-3UTR CAA 90 bp ATACAGGCCCATCCAGAACGTCATTTGGCAACGATCACTAGCGATATTTACAACGTGACAACGTTAACGTaGGGATGGTTTGGTCCCCTC +
Preference number: 3 (lower is better)
Translates to: IQAHPERHLATITSDIYNVTTLT*GWFGPL
Trigger: GAGGGGACCAAACCATCCCAACGTTAACGTTGTCAC...GTTGTAAATATCGCTAGTGATCGTTGCCAAATGACGTTCTGGATGGGCCTGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
3UTR TCA 72 bp CAGTTGACATCCACAAGGCAGACGAAAGAAAAAGGTTaGATGCCATCAACCTTTTCATCACACTCCAAGGGA +
Preference number: 3 (lower is better)
Translates to: QLTSTRQTKEKG*MPSTFSSHSKG
Trigger: TCCCTTGGAGTGTGATGAAAAGGTTGATGGCATTCAACCTTTTTCTTTCGTCTGCCTTGTGGATGTCAACTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109970.5
3UTR GCA 72 bp CGATCACTAGCGATATTTACAACGAAGAGCGAAATTTaGCACCAGTTGTCAGAACGTGTACATGGCCATAAA +
Preference number: 3 (lower is better)
Translates to: RSLAIFTTKSEI*HQLSERVHGHK
Trigger: TTTATGGCCATGTACACGTTCTGACAACTGGTGGCAAATTTCGCTCTTCGTTGTAAATATCGCTAGTGATCG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
3UTR-3UTR CAA 90 bp CCTGGCACAGGAAACATTTTGAAGAGGTGGAAATATATGCTTCAATTGTGGTGGGACGAAAGAAAAAGGTaGAATGCCATCAACCTTTTC +
Preference number: 3 (lower is better)
Translates to: PGTGNILKRWKYMLQLWWDERKR*NAINLF
Trigger: GAAAAGGTTGATGGCATTCAACCTTTTTCTTTCGTC...CCACCACAATTGAAGCATATATTTCCACCTCTTCAAAATGTTTCCTGTGCCAGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000109970.5
CDS-3UTR CCA 90 bp ACGTTGGGATGGTTTGGTCCCCTCAGGGAGAGAGAGGCAAAGAAGCAAAGCTGCGCGGCTGCCAGGTCCTaGGCTTTGAGCGCGTGGCAC +
Preference number: 4 (lower is better)
Translates to: TLGWFGPLREREAKKQSCAAARS*ALSAWH
Trigger: GTGCCACGCGCTCAAAGCCCAGGACCTGGCAGCCGC...GCAGCTTTGCTTCTTTGCCTCTCTCTCCCTGAGGGGACCAAACCATCCCAACGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS-3UTR CCA 90 bp CGTTGGGATGGTTTGGTCCCCTCAGGGAGAGAGAGGCAAAGAAGCAAAGCTGCACCGTGCAGGGAGTATTaGAGGCCCTCGGTGCTGGCC +
Preference number: 4 (lower is better)
Translates to: RWDGLVPSGRERQRSKAAPCREY*RPSVLA
Trigger: GGCCAGCACCGAGGGCCTCCAATACTCCCTGCACGG...TGCAGCTTTGCTTCTTTGCCTCTCTCTCCCTGAGGGGACCAAACCATCCCAACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS-3UTR CCA 90 bp GGGTGGGGGCCGGTTGGTCCTTTCTCTTTTCAAGTGACAACGTTAACGTTGGGATTCGCTCTCCTCCTCTaGCCCTTCGGCCACCGAGCC +
Preference number: 4 (lower is better)
Translates to: GWGPVGPFSFQVTTLTLGFALLL*PFGHRA
Trigger: GGCTCGGTGGCCGAAGGGCCAGAGGAGGAGAGCGAA...TCCCAACGTTAACGTTGTCACTTGAAAAGAGAAAGGACCAACCGGCCCCCACCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS-3UTR CCA 90 bp GTGGGGGCCGGTTGGTCCTTTCTCTTTTCAAGTGACAACGTTAACGTTGGGATGGGAGGCCCTCGGTGCTaGCCAGCCAGCGAGTGTAGG +
Preference number: 4 (lower is better)
Translates to: VGAGWSFLFSSDNVNVGMGGPRC*PASECR
Trigger: CCTACACTCGCTGGCTGGCCAGCACCGAGGGCCTCC...CATCCCAACGTTAACGTTGTCACTTGAAAAGAGAAAGGACCAACCGGCCCCCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS-3UTR CCA 90 bp ATCGAAAGCTTTCAGCGCCCGGCGCTCTTGGGGAAACCACGTGAAACTGCTGAGGTCAGCCGAGGGCTCTaGGGATTTGGAGCTCGAGTC +
Preference number: 4 (lower is better)
Translates to: IESFQRPALLGKPRETAEVSRGL*GFGARV
Trigger: GACTCGAGCTCCAAATCCCCAGAGCCCTCGGCTGAC...CTCAGCAGTTTCACGTGGTTTCCCCAAGAGCGCCGGGCGCTGAAAGCTTTCGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS-3UTR CCA 90 bp CGTTGGGATGGTTTGGTCCCCTCAGGGAGAGAGAGGCAAAGAAGCAAAGCTGCACACCAAGTCCACTGCTaGGCCTGGACCAGGGGGTGT +
Preference number: 4 (lower is better)
Translates to: RWDGLVPSGRERQRSKAAHQVHC*AWTRGC
Trigger: ACACCCCCTGGTCCAGGCCCAGCAGTGGACTTGGTG...TGCAGCTTTGCTTCTTTGCCTCTCTCTCCCTGAGGGGACCAAACCATCCCAACG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS-3UTR TCA 90 bp CGTTGGGATGGTTTGGTCCCCTCAGGGAGAGAGAGGCAAAGAAGCAAAGCTGCACTTGTCATTGTCCGGTaGCTCGTCAGCCGAGGGCTC +
Preference number: 4 (lower is better)
Translates to: RWDGLVPSGRERQRSKAALVIVR*LVSRGL
Trigger: GAGCCCTCGGCTGACGAGTCACCGGACAATGACAAG...TGCAGCTTTGCTTCTTTGCCTCTCTCTCCCTGAGGGGACCAAACCATCCCAACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS-3UTR TCA 90 bp ACGTTAACGTTGGGATGGTTTGGTCCCCTCAGGGAGAGAGAGGCAAAGAAGCAACCAGGTCCTGGGCTTTaGGCGCGTGGCACGGTTTGC +
Preference number: 4 (lower is better)
Translates to: TLTLGWFGPLREREAKKQPGPGL*ARGTVC
Trigger: GCAAACCGTGCCACGCGCTCAAAGCCCAGGACCTGG...TTGCTTCTTTGCCTCTCTCTCCCTGAGGGGACCAAACCATCCCAACGTTAACGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS-3UTR GCA 90 bp CGCTACTCACACAAACATAGTTTACAAAATTCACGAAAGCAGTGCGGGGGTGGGGACCAAGACCGGCACTaGCACACGGCGCGGCGAGGG +
Preference number: 4 (lower is better)
Translates to: RYSHKHSLQNSRKQCGGGDQDRH*HTARRG
Trigger: CCCTCGCCGCGCCGTGTGGCAGTGCCGGTCTTGGTC...CCCACCCCCGCACTGCTTTCGTGAATTTTGTAAACTATGTTTGTGTGAGTAGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS-3UTR CCA 90 bp CTGCAACTCAAACATAACCCACCGAAAACAAACGACAAAGAGAGGCAGGCCCGGTGTGCTGTCGGGTACTaGGGGGTGCTGGCCGAGCTG +
Preference number: 4 (lower is better)
Translates to: LQLKHNPPKTNDKERQARCAVGY*GVLAEL
Trigger: CAGCTCGGCCAGCACCCCCCAGTACCCGACAGCACA...CCGGGCCTGCCTCTCTTTGTCGTTTGTTTTCGGTGGGTTATGTTTGAGTTGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS-3UTR GCA 90 bp CTGCAACTCAAACATAACCCACCGAAAACAAACGACAAAGAGAGGCAGGCCCGGCTGGAAGGTGGCGGCTaGCAGGTCCTGGGCTTTGAG +
Preference number: 4 (lower is better)
Translates to: LQLKHNPPKTNDKERQARLEGGG*QVLGFE
Trigger: CTCAAAGCCCAGGACCTGGCAGCCGCCACCTTCCAG...CCGGGCCTGCCTCTCTTTGTCGTTTGTTTTCGGTGGGTTATGTTTGAGTTGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS-3UTR GCA 90 bp ACGTTAACGTTGGGATGGTTTGGTCCCCTCAGGGAGAGAGAGGCAAAGAAGCAAAGGCGGAAAAGGGGATaGCTGCCTGGAAGGTGGCGG +
Preference number: 4 (lower is better)
Translates to: TLTLGWFGPLREREAKKQRRKRG*LPGRWR
Trigger: CCGCCACCTTCCAGGCAGGCATCCCCTTTTCCGCCT...TTGCTTCTTTGCCTCTCTCTCCCTGAGGGGACCAAACCATCCCAACGTTAACGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS-3UTR GCA 90 bp GTGGGGGCCGGTTGGTCCTTTCTCTTTTCAAGTGACAACGTTAACGTTGGGATGGCGTTGTACTGCATGTaGTGCAGCGACTGCGCGCTG +
Preference number: 4 (lower is better)
Translates to: VGAGWSFLFSSDNVNVGMALYCM*CSDCAL
Trigger: CAGCGCGCAGTCGCTGCAGCACATGCAGTACAACGC...CATCCCAACGTTAACGTTGTCACTTGAAAAGAGAAAGGACCAACCGGCCCCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS-3UTR GCA 90 bp CGTTGGGATGGTTTGGTCCCCTCAGGGAGAGAGAGGCAAAGAAGCAAAGCTGCATGTAGGGGTTGTCGCTaGTGTCGTAGAAAGGGCTCT +
Preference number: 4 (lower is better)
Translates to: RWDGLVPSGRERQRSKAACRGCR*CRRKGS
Trigger: AGAGCCCTTTCTACGACAGCAGCGACAACCCCTACA...TGCAGCTTTGCTTCTTTGCCTCTCTCTCCCTGAGGGGACCAAACCATCCCAACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS-3UTR GCA 90 bp ATTTACAACGAAGAGCGAAATTTGCCACCAGTTGTCAGAACGTGTACATGGCCACTGGCCGCCAGCCCGTaGAGGGAGTATTGGAGGCCC +
Preference number: 4 (lower is better)
Translates to: IYNEERNLPPVVRTCTWPLAASP*REYWRP
Trigger: GGGCCTCCAATACTCCCTGCACGGGCTGGCGGCCAG...TGGCCATGTACACGTTCTGACAACTGGTGGCAAATTTCGCTCTTCGTTGTAAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS-3UTR TCA 90 bp ACGTTGGGATGGTTTGGTCCCCTCAGGGAGAGAGAGGCAAAGAAGCAAAGCTGCGGTCCAAGATGTCCTTaGCTGAAAACCCCGTCTTTG +
Preference number: 4 (lower is better)
Translates to: TLGWFGPLREREAKKQSCGPRCP*LKTPSL
Trigger: CAAAGACGGGGTTTTCAGTCAAGGACATCTTGGACC...GCAGCTTTGCTTCTTTGCCTCTCTCTCCCTGAGGGGACCAAACCATCCCAACGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS-3UTR CCA 90 bp AAAAAGGTTGAATGCCATCAACCTTTTCATCACACTCCAAGGGACAAGCACCAAGGAGGCCCTCGGTGCTaGCCAGCCAGCGAGTGTAGG +
Preference number: 4 (lower is better)
Translates to: KKVECHQPFHHTPRDKHQGGPRC*PASECR
Trigger: CCTACACTCGCTGGCTGGCCAGCACCGAGGGCCTCC...TTGGTGCTTGTCCCTTGGAGTGTGATGAAAAGGTTGATGGCATTCAACCTTTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109970.5
CDS-3UTR CCA 90 bp ATACAGGCCCATCCAGAACGTCATTTGGCAACGATCACTAGCGATATTTACAACGTCCACTGCTGGGCCTaGACCAGGGGGTGTGCTGTC +
Preference number: 4 (lower is better)
Translates to: IQAHPERHLATITSDIYNVHCWA*TRGCAV
Trigger: GACAGCACACCCCCTGGTCCAGGCCCAGCAGTGGAC...GTTGTAAATATCGCTAGTGATCGTTGCCAAATGACGTTCTGGATGGGCCTGTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
3UTR CAA 72 bp GGCCCGGTGGGGATACAGGCCCATCCAGAACGTCATTaGGCAACGATCACTAGCGATATTTACAACGAAGAG +
Preference number: 4 (lower is better)
Translates to: GPVGIQAHPERH*ATITSDIYNEE
Trigger: CTCTTCGTTGTAAATATCGCTAGTGATCGTTGCCAAATGACGTTCTGGATGGGCCTGTATCCCCACCGGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS-3UTR GCA 90 bp ATACAGGCCCATCCAGAACGTCATTTGGCAACGATCACTAGCGATATTTACAACATTGGAGGCCCTCGGTaGTGGCCAGCCAGCGAGTGT +
Preference number: 4 (lower is better)
Translates to: IQAHPERHLATITSDIYNIGGPR*WPASEC
Trigger: ACACTCGCTGGCTGGCCAGCACCGAGGGCCTCCAAT...GTTGTAAATATCGCTAGTGATCGTTGCCAAATGACGTTCTGGATGGGCCTGTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS-3UTR GCA 90 bp GGCAGACGAAAGAAAAAGGTTGAATGCCATCAACCTTTTCATCACACTCCAAGGATTGGAGGCCCTCGGTaGTGGCCAGCCAGCGAGTGT +
Preference number: 4 (lower is better)
Translates to: GRRKKKVECHQPFHHTPRIGGPR*WPASEC
Trigger: ACACTCGCTGGCTGGCCAGCACCGAGGGCCTCCAAT...CCTTGGAGTGTGATGAAAAGGTTGATGGCATTCAACCTTTTTCTTTCGTCTGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109970.5
CDS-3UTR CCA 90 bp AAAAAGGTTGAATGCCATCAACCTTTTCATCACACTCCAAGGGACAAGCACCAATTCGCTCTCCTCCTCTaGCCCTTCGGCCACCGAGCC +
Preference number: 4 (lower is better)
Translates to: KKVECHQPFHHTPRDKHQFALLL*PFGHRA
Trigger: GGCTCGGTGGCCGAAGGGCCAGAGGAGGAGAGCGAA...TTGGTGCTTGTCCCTTGGAGTGTGATGAAAAGGTTGATGGCATTCAACCTTTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109970.5
CDS-3UTR CCA 90 bp TTACAACGAAGAGCGAAATTTGCCACCAGTTGTCAGAACGTGTACATGGCCATATGGGCTTTGAGCGCGTaGCACGGTTTGCCGTCCCTG +
Preference number: 4 (lower is better)
Translates to: LQRRAKFATSCQNVYMAIWALSA*HGLPSL
Trigger: CAGGGACGGCAAACCGTGCCACGCGCTCAAAGCCCA...TATGGCCATGTACACGTTCTGACAACTGGTGGCAAATTTCGCTCTTCGTTGTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS-3UTR TCA 90 bp AAGGTTGAATGCCATCAACCTTTTCATCACACTCCAAGGGACAAGCACCAAGCCCCTCAAATCCACAGATaGCCAGATTGTGCTCCCAGG +
Preference number: 4 (lower is better)
Translates to: KVECHQPFHHTPRDKHQAPQIHR*PDCAPR
Trigger: CCTGGGAGCACAATCTGGTCATCTGTGGATTTGAGG...GGCTTGGTGCTTGTCCCTTGGAGTGTGATGAAAAGGTTGATGGCATTCAACCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109970.5
CDS-3UTR GCA 90 bp GGCAGACGAAAGAAAAAGGTTGAATGCCATCAACCTTTTCATCACACTCCAAGGCCGTCGGTTTTGAAATaGTTTCTCCGCCCGGGCACG +
Preference number: 4 (lower is better)
Translates to: GRRKKKVECHQPFHHTPRPSVLK*FLRPGT
Trigger: CGTGCCCGGGCGGAGAAAGCATTTCAAAACCGACGG...CCTTGGAGTGTGATGAAAAGGTTGATGGCATTCAACCTTTTTCTTTCGTCTGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000109970.5
CDS-3UTR CCA 90 bp TCACACTCCAAGGGACAAGCACCAAGCCAAAGAATTGTAATTCTTTCTTTGGCAGTCAGCCGAGGGCTCTaGGGATTTGGAGCTCGAGTC +
Preference number: 4 (lower is better)
Translates to: SHSKGQAPSQRIVILSLAVSRGL*GFGARV
Trigger: GACTCGAGCTCCAAATCCCCAGAGCCCTCGGCTGAC...TGCCAAAGAAAGAATTACAATTCTTTGGCTTGGTGCTTGTCCCTTGGAGTGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109970.5
CDS-3UTR CCA 90 bp ATACAGGCCCATCCAGAACGTCATTTGGCAACGATCACTAGCGATATTTACAACCTGGCCGAGCTGTACTaGGCGTTGTACTGCATGTGC +
Preference number: 4 (lower is better)
Translates to: IQAHPERHLATITSDIYNLAELY*ALYCMC
Trigger: GCACATGCAGTACAACGCCCAGTACAGCTCGGCCAG...GTTGTAAATATCGCTAGTGATCGTTGCCAAATGACGTTCTGGATGGGCCTGTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
3UTR CAA 72 bp GTTGGTCCTTTCTCTTTTCAAGTGACAACGTTAACGTaGGGATGGTTTGGTCCCCTCAGGGAGAGAGAGGCA +
Preference number: 4 (lower is better)
Translates to: VGPFSFQVTTLT*GWFGPLREREA
Trigger: TGCCTCTCTCTCCCTGAGGGGACCAAACCATCCCAACGTTAACGTTGTCACTTGAAAAGAGAAAGGACCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS-3UTR TCA 90 bp ACGTTAACGTTGGGATGGTTTGGTCCCCTCAGGGAGAGAGAGGCAAAGAAGCAACAAGATGTCCTTGACTaGAAACCCCGTCTTTGTGTT +
Preference number: 4 (lower is better)
Translates to: TLTLGWFGPLREREAKKQQDVLD*KPRLCV
Trigger: AACACAAAGACGGGGTTTTCAGTCAAGGACATCTTG...TTGCTTCTTTGCCTCTCTCTCCCTGAGGGGACCAAACCATCCCAACGTTAACGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS-3UTR GCA 90 bp ATACAGGCCCATCCAGAACGTCATTTGGCAACGATCACTAGCGATATTTACAACTACTGGGCGTTGTACTaGATGTGCTGCAGCGACTGC +
Preference number: 4 (lower is better)
Translates to: IQAHPERHLATITSDIYNYWALY*MCCSDC
Trigger: GCAGTCGCTGCAGCACATGCAGTACAACGCCCAGTA...GTTGTAAATATCGCTAGTGATCGTTGCCAAATGACGTTCTGGATGGGCCTGTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS-3UTR GCA 90 bp CTCCAAGGGACAAGCACCAAGCCAAAGAATTGTAATTCTTTCTTTGGCATTGTGTGTAGGGGTTGTCGCTaGTGTCGTAGAAAGGGCTCT +
Preference number: 4 (lower is better)
Translates to: LQGTSTKPKNCNSFFGIVCRGCR*CRRKGS
Trigger: AGAGCCCTTTCTACGACAGCAGCGACAACCCCTACA...CACAATGCCAAAGAAAGAATTACAATTCTTTGGCTTGGTGCTTGTCCCTTGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109970.5
CDS-3UTR TCA 90 bp TCACACTCCAAGGGACAAGCACCAAGCCAAAGAATTGTAATTCTTTCTTTGGCAGGTCCAAGATGTCCTTaGCTGAAAACCCCGTCTTTG +
Preference number: 4 (lower is better)
Translates to: SHSKGQAPSQRIVILSLAGPRCP*LKTPSL
Trigger: CAAAGACGGGGTTTTCAGTCAAGGACATCTTGGACC...TGCCAAAGAAAGAATTACAATTCTTTGGCTTGGTGCTTGTCCCTTGGAGTGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109970.5
3UTR CAA 72 bp ACAGTTGACATCCACAAGGCAGACGAAAGAAAAAGGTaGAATGCCATCAACCTTTTCATCACACTCCAAGGG +
Preference number: 4 (lower is better)
Translates to: TVDIHKADERKR*NAINLFITLQG
Trigger: CCCTTGGAGTGTGATGAAAAGGTTGATGGCATTCAACCTTTTTCTTTCGTCTGCCTTGTGGATGTCAACTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109970.5
CDS-3UTR TCA 90 bp CCTGGCACAGGAAACATTTTGAAGAGGTGGAAATATATGCTTCAATTGTGGTGGCAAGATGTCCTTGACTaGAAACCCCGTCTTTGTGTT +
Preference number: 4 (lower is better)
Translates to: PGTGNILKRWKYMLQLWWQDVLD*KPRLCV
Trigger: AACACAAAGACGGGGTTTTCAGTCAAGGACATCTTG...CCACCACAATTGAAGCATATATTTCCACCTCTTCAAAATGTTTCCTGTGCCAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109970.5
3UTR CAA 72 bp GCGATATTTACAACGAAGAGCGAAATTTGCCACCAGTaGTCAGAACGTGTACATGGCCATAAATATTTAGCA +
Preference number: 4 (lower is better)
Translates to: AIFTTKSEICHQ*SERVHGHKYLA
Trigger: TGCTAAATATTTATGGCCATGTACACGTTCTGACAACTGGTGGCAAATTTCGCTCTTCGTTGTAAATATCGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS GCA 90 bp AAAGGGCTCTTAAGGGGCAGGCTCTGCACAGCGTCCAGGGCGCCCTaGCCCAGCGGCCCGGCCCTCTTGGCGGGCTCCGGCCCTTCGCTC +
Preference number: 5 (lower is better)
Translates to: KGLLRGRLCTASRAP*PSGPALLAGSGPSL
Trigger: GAGCGAAGGGCCGGAGCCCGCCAAGAGGGCCGGGCCGCTGGGGCAGGGCGCCCTGGACGCTGTGCAGAGCCTGCCCCTTAAGAGCCCTTT
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067075.7
ENSMUST00000109970.5
CDS CCA 90 bp CGGCCCGGCCCTCTTGGCGGGCTCCGGCCCTTCGCTCTCCTCCTCTaGCCCTTCGGCCACCGAGCCGTCTTCATCGTTGGTGTCCGGAAG +
Preference number: 5 (lower is better)
Translates to: RPGPLGGLRPFALLL*PFGHRAVFIVGVRK
Trigger: CTTCCGGACACCAACGATGAAGACGGCTCGGTGGCCGAAGGGCCAGAGGAGGAGAGCGAAGGGCCGGAGCCCGCCAAGAGGGCCGGGCCG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067075.7
ENSMUST00000109970.5
CDS GCA 90 bp GAGCGCTGGCCGCCAGCCCGTGCAGGGAGTATTGGAGGCCCTCGGTaGTGGCCAGCCAGCGAGTGTAGGGGTTGTCGCTGCTGTCGTAGA +
Preference number: 5 (lower is better)
Translates to: ERWPPARAGSIGGPR*WPASECRGCRCCRR
Trigger: TCTACGACAGCAGCGACAACCCCTACACTCGCTGGCTGGCCAGCACCGAGGGCCTCCAATACTCCCTGCACGGGCTGGCGGCCAGCGCTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067075.7
ENSMUST00000109970.5
CDS-3UTR CAA 90 bp AACCGTGGTAAGGATCGAGTCCTCCTCGCCACCGGCGCCGCTGGGGTGGGGCCAGAGGGCTCTGGGGATTaGGAGCTCGAGTCTTGGGGG +
Preference number: 5 (lower is better)
Translates to: NRGKDRVLLATGAAGVGPEGSGD*ELESWG
Trigger: CCCCCAAGACTCGAGCTCCAAATCCCCAGAGCCCTC...TGGCCCCACCCCAGCGGCGCCGGTGGCGAGGAGGACTCGATCCTTACCACGGTT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS CCA 90 bp CGCTGGCCGCCAGCCCGTGCAGGGAGTATTGGAGGCCCTCGGTGCTaGCCAGCCAGCGAGTGTAGGGGTTGTCGCTGCTGTCGTAGAAAG +
Preference number: 5 (lower is better)
Translates to: RWPPARAGSIGGPRC*PASECRGCRCCRRK
Trigger: CTTTCTACGACAGCAGCGACAACCCCTACACTCGCTGGCTGGCCAGCACCGAGGGCCTCCAATACTCCCTGCACGGGCTGGCGGCCAGCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067075.7
ENSMUST00000109970.5
CDS CCA 90 bp CAAGTCCACTGCTGGGCCTGGACCAGGGGGTGTGCTGTCGGGTACTaGGGGGTGCTGGCCGAGCTGTACTGGGCGTTGTACTGCATGTGC +
Preference number: 5 (lower is better)
Translates to: QVHCWAWTRGCAVGY*GVLAELYWALYCMC
Trigger: GCACATGCAGTACAACGCCCAGTACAGCTCGGCCAGCACCCCCCAGTACCCGACAGCACACCCCCTGGTCCAGGCCCAGCAGTGGACTTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS-3UTR CAA 90 bp ATCGAAAGCTTTCAGCGCCCGGCGCTCTTGGGGAAACCACGTGAAACTGCTGAGGCCAGGTCCTGGGCTTaGAGCGCGTGGCACGGTTTG +
Preference number: 5 (lower is better)
Translates to: IESFQRPALLGKPRETAEARSWA*SAWHGL
Trigger: CAAACCGTGCCACGCGCTCAAAGCCCAGGACCTGGC...CTCAGCAGTTTCACGTGGTTTCCCCAAGAGCGCCGGGCGCTGAAAGCTTTCGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS-3UTR CAA 90 bp CTGCAACTCAAACATAACCCACCGAAAACAAACGACAAAGAGAGGCAGGCCCGGCCCGTGCAGGGAGTATaGGAGGCCCTCGGTGCTGGC +
Preference number: 5 (lower is better)
Translates to: LQLKHNPPKTNDKERQARPVQGV*EALGAG
Trigger: GCCAGCACCGAGGGCCTCCAATACTCCCTGCACGGG...CCGGGCCTGCCTCTCTTTGTCGTTTGTTTTCGGTGGGTTATGTTTGAGTTGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS-3UTR CAA 90 bp ACGTTAACGTTGGGATGGTTTGGTCCCCTCAGGGAGAGAGAGGCAAAGAAGCAAAGCGCGTGGCACGGTTaGCCGTCCCTGACCAAGACC +
Preference number: 5 (lower is better)
Translates to: TLTLGWFGPLREREAKKQSAWHG*PSLTKT
Trigger: GGTCTTGGTCAGGGACGGCAAACCGTGCCACGCGCT...TTGCTTCTTTGCCTCTCTCTCCCTGAGGGGACCAAACCATCCCAACGTTAACGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS GCA 90 bp GGGCACCGCAGCTTCGATCCTGGCATCCATCCGTCGGTTTTGAAATaGTTTCTCCGCCCGGGCACGTTTCATCTTGTAGCGATGGTTCTG +
Preference number: 5 (lower is better)
Translates to: GHRSFDPGIHPSVLK*FLRPGTFHLVAMVL
Trigger: CAGAACCATCGCTACAAGATGAAACGTGCCCGGGCGGAGAAAGCATTTCAAAACCGACGGATGGATGCCAGGATCGAAGCTGCGGTGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109970.5
CDS GCA 90 bp CAGTCGCCCGACCTGAAATTGTTTTCTTATCCAATCGCTCCACCTTaGGGACACTATGGGCACCGCAGCTTCGATCCTGGCATCCATCCG +
Preference number: 5 (lower is better)
Translates to: QSPDLKLFSYPIAPP*GHYGHRSFDPGIHP
Trigger: CGGATGGATGCCAGGATCGAAGCTGCGGTGCCCATAGTGTCCGCAAGGTGGAGCGATTGGATAAGAAAACAATTTCAGGTCGGGCGACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109970.5
CDS-3UTR CAA 90 bp AAGGTTGAATGCCATCAACCTTTTCATCACACTCCAAGGGACAAGCACCAAGCCCCGCCCTGGGTCTCCTaGTCATTGTCCGGTGACTCG +
Preference number: 5 (lower is better)
Translates to: KVECHQPFHHTPRDKHQAPPWVS*SLSGDS
Trigger: CGAGTCACCGGACAATGACAAGGAGACCCAGGGCGG...GGCTTGGTGCTTGTCCCTTGGAGTGTGATGAAAAGGTTGATGGCATTCAACCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109970.5
CDS-3UTR CAA 90 bp CTCCAAGGGACAAGCACCAAGCCAAAGAATTGTAATTCTTTCTTTGGCATTGTGCCCGTGCAGGGAGTATaGGAGGCCCTCGGTGCTGGC +
Preference number: 5 (lower is better)
Translates to: LQGTSTKPKNCNSFFGIVPVQGV*EALGAG
Trigger: GCCAGCACCGAGGGCCTCCAATACTCCCTGCACGGG...CACAATGCCAAAGAAAGAATTACAATTCTTTGGCTTGGTGCTTGTCCCTTGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109970.5
CDS-3UTR CAA 90 bp TTACAACGAAGAGCGAAATTTGCCACCAGTTGTCAGAACGTGTACATGGCCATACCGCCCTGGGTCTCCTaGTCATTGTCCGGTGACTCG +
Preference number: 5 (lower is better)
Translates to: LQRRAKFATSCQNVYMAIPPWVS*SLSGDS
Trigger: CGAGTCACCGGACAATGACAAGGAGACCCAGGGCGG...TATGGCCATGTACACGTTCTGACAACTGGTGGCAAATTTCGCTCTTCGTTGTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS-3UTR CAA 90 bp CTGCAACTCAAACATAACCCACCGAAAACAAACGACAAAGAGAGGCAGGCCCGGAGGTCCAAGATGTCCTaGACTGAAAACCCCGTCTTT +
Preference number: 5 (lower is better)
Translates to: LQLKHNPPKTNDKERQARRSKMS*TENPVF
Trigger: AAAGACGGGGTTTTCAGTCAAGGACATCTTGGACCT...CCGGGCCTGCCTCTCTTTGTCGTTTGTTTTCGGTGGGTTATGTTTGAGTTGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS-3UTR CAA 90 bp TTACAACGAAGAGCGAAATTTGCCACCAGTTGTCAGAACGTGTACATGGCCATATGGGTCTCCTTGTCATaGTCCGGTGACTCGTCAGCC +
Preference number: 5 (lower is better)
Translates to: LQRRAKFATSCQNVYMAIWVSLS*SGDSSA
Trigger: GGCTGACGAGTCACCGGACAATGACAAGGAGACCCA...TATGGCCATGTACACGTTCTGACAACTGGTGGCAAATTTCGCTCTTCGTTGTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS-3UTR CAA 90 bp GGCAGACGAAAGAAAAAGGTTGAATGCCATCAACCTTTTCATCACACTCCAAGGTGGGTCTCCTTGTCATaGTCCGGTGACTCGTCAGCC +
Preference number: 5 (lower is better)
Translates to: GRRKKKVECHQPFHHTPRWVSLS*SGDSSA
Trigger: GGCTGACGAGTCACCGGACAATGACAAGGAGACCCA...CCTTGGAGTGTGATGAAAAGGTTGATGGCATTCAACCTTTTTCTTTCGTCTGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109970.5
CDS-3UTR CAA 90 bp CTCCAAGGGACAAGCACCAAGCCAAAGAATTGTAATTCTTTCTTTGGCATTGTGAGGTCCAAGATGTCCTaGACTGAAAACCCCGTCTTT +
Preference number: 5 (lower is better)
Translates to: LQGTSTKPKNCNSFFGIVRSKMS*TENPVF
Trigger: AAAGACGGGGTTTTCAGTCAAGGACATCTTGGACCT...CACAATGCCAAAGAAAGAATTACAATTCTTTGGCTTGGTGCTTGTCCCTTGGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109970.5
CDS CAA 90 bp AAGGTGGCGGCTGCCAGGTCCTGGGCTTTGAGCGCGTGGCACGGTTaGCCGTCCCTGACCAAGACCGGCACTGCCACACGGCGCGGCGAG +
Preference number: 6 (lower is better)
Translates to: KVAAARSWALSAWHG*PSLTKTGTATRRGE
Trigger: CTCGCCGCGCCGTGTGGCAGTGCCGGTCTTGGTCAGGGACGGCAAACCGTGCCACGCGCTCAAAGCCCAGGACCTGGCAGCCGCCACCTT
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS GCA 72 bp CCGCCAGCCCGTGCAGGGAGTATTGGAGGCCCTCGGTaGTGGCCAGCCAGCGAGTGTAGGGGTTGTCGCTGC +
Preference number: 6 (lower is better)
Translates to: PPARAGSIGGPR*WPASECRGCRC
Trigger: GCAGCGACAACCCCTACACTCGCTGGCTGGCCAGCACCGAGGGCCTCCAATACTCCCTGCACGGGCTGGCGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067075.7
ENSMUST00000109970.5
CDS GCA 72 bp GCTGCAGCGACTGCGCGCTGTAGGCGGAAAAGGGGATaGCTGCCTGGAAGGTGGCGGCTGCCAGGTCCTGGG +
Preference number: 6 (lower is better)
Translates to: AAATARCRRKRG*LPGRWRLPGPG
Trigger: CCCAGGACCTGGCAGCCGCCACCTTCCAGGCAGGCATCCCCTTTTCCGCCTACAGCGCGCAGTCGCTGCAGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS CCA 72 bp GGGATGCCTGCCTGGAAGGTGGCGGCTGCCAGGTCCTaGGCTTTGAGCGCGTGGCACGGTTTGCCGTCCCTG +
Preference number: 6 (lower is better)
Translates to: GMPAWKVAAARS*ALSAWHGLPSL
Trigger: CAGGGACGGCAAACCGTGCCACGCGCTCAAAGCCCAGGACCTGGCAGCCGCCACCTTCCAGGCAGGCATCCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS CCA 72 bp CCTCTTGGCGGGCTCCGGCCCTTCGCTCTCCTCCTCTaGCCCTTCGGCCACCGAGCCGTCTTCATCGTTGGT +
Preference number: 6 (lower is better)
Translates to: PLGGLRPFALLL*PFGHRAVFIVG
Trigger: ACCAACGATGAAGACGGCTCGGTGGCCGAAGGGCCAGAGGAGGAGAGCGAAGGGCCGGAGCCCGCCAAGAGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067075.7
ENSMUST00000109970.5
CDS CCA 72 bp TGCTGGGCCTGGACCAGGGGGTGTGCTGTCGGGTACTaGGGGGTGCTGGCCGAGCTGTACTGGGCGTTGTAC +
Preference number: 6 (lower is better)
Translates to: CWAWTRGCAVGY*GVLAELYWALY
Trigger: GTACAACGCCCAGTACAGCTCGGCCAGCACCCCCCAGTACCCGACAGCACACCCCCTGGTCCAGGCCCAGCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS GCA 72 bp CAGCGACTGCGCGCTGTAGGCGGAAAAGGGGATGCCTaGCTGGAAGGTGGCGGCTGCCAGGTCCTGGGCTTT +
Preference number: 6 (lower is better)
Translates to: QRLRAVGGKGDA*LEGGGCQVLGF
Trigger: AAAGCCCAGGACCTGGCAGCCGCCACCTTCCAGGCAGGCATCCCCTTTTCCGCCTACAGCGCGCAGTCGCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067075.7
CDS CCA 72 bp CCAGCCCGTGCAGGGAGTATTGGAGGCCCTCGGTGCTaGCCAGCCAGCGAGTGTAGGGGTTGTCGCTGCTGT +
Preference number: 6 (lower is better)
Translates to: PARAGSIGGPRC*PASECRGCRCC
Trigger: ACAGCAGCGACAACCCCTACACTCGCTGGCTGGCCAGCACCGAGGGCCTCCAATACTCCCTGCACGGGCTGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067075.7
ENSMUST00000109970.5
CDS CAA 90 bp TCGCTCTCCTCCTCTGGCCCTTCGGCCACCGAGCCGTCTTCATCGTaGGTGTCCGGAAGGTCCAAGATGTCCTTGACTGAAAACCCCGTC +
Preference number: 6 (lower is better)
Translates to: SLSSSGPSATEPSSS*VSGRSKMSLTENPV
Trigger: GACGGGGTTTTCAGTCAAGGACATCTTGGACCTTCCGGACACCAACGATGAAGACGGCTCGGTGGCCGAAGGGCCAGAGGAGGAGAGCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067075.7
ENSMUST00000109970.5
CDS CAA 72 bp TCCTCTGGCCCTTCGGCCACCGAGCCGTCTTCATCGTaGGTGTCCGGAAGGTCCAAGATGTCCTTGACTGAA +
Preference number: 6 (lower is better)
Translates to: SSGPSATEPSSS*VSGRSKMSLTE
Trigger: TTCAGTCAAGGACATCTTGGACCTTCCGGACACCAACGATGAAGACGGCTCGGTGGCCGAAGGGCCAGAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067075.7
ENSMUST00000109970.5
CDS CAA 90 bp CACTATGGGCACCGCAGCTTCGATCCTGGCATCCATCCGTCGGTTTaGAAATGCTTTCTCCGCCCGGGCACGTTTCATCTTGTAGCGATG +
Preference number: 6 (lower is better)
Translates to: HYGHRSFDPGIHPSV*KCFLRPGTFHLVAM
Trigger: CATCGCTACAAGATGAAACGTGCCCGGGCGGAGAAAGCATTTCAAAACCGACGGATGGATGCCAGGATCGAAGCTGCGGTGCCCATAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109970.5
CDS GCA 72 bp AGCTTCGATCCTGGCATCCATCCGTCGGTTTTGAAATaGTTTCTCCGCCCGGGCACGTTTCATCTTGTAGCG +
Preference number: 6 (lower is better)
Translates to: SFDPGIHPSVLK*FLRPGTFHLVA
Trigger: CGCTACAAGATGAAACGTGCCCGGGCGGAGAAAGCATTTCAAAACCGACGGATGGATGCCAGGATCGAAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109970.5
CDS TCA 72 bp AATGGACTTTACCCAGACATCCCTCAAATCCACAGATaGCCAGATTGTGCTCCCAGGCCTGAGTCAGTCGCC +
Preference number: 6 (lower is better)
Translates to: NGLYPDIPQIHR*PDCAPRPESVA
Trigger: GGCGACTGACTCAGGCCTGGGAGCACAATCTGGTCATCTGTGGATTTGAGGGATGTCTGGGTAAAGTCCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109970.5
CDS GCA 72 bp GACCTGAAATTGTTTTCTTATCCAATCGCTCCACCTTaGGGACACTATGGGCACCGCAGCTTCGATCCTGGC +
Preference number: 6 (lower is better)
Translates to: DLKLFSYPIAPP*GHYGHRSFDPG
Trigger: GCCAGGATCGAAGCTGCGGTGCCCATAGTGTCCGCAAGGTGGAGCGATTGGATAAGAAAACAATTTCAGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109970.5
CDS TCA 72 bp CTTCATCGTTGGTGTCCGGAAGGTCCAAGATGTCCTTaGCTGAAAACCCCGTCTTTGTGTTGGTCAGCGACA +
Preference number: 6 (lower is better)
Translates to: LHRWCPEGPRCP*LKTPSLCWSAT
Trigger: TGTCGCTGACCAACACAAAGACGGGGTTTTCAGTCAAGGACATCTTGGACCTTCCGGACACCAACGATGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067075.7
ENSMUST00000109970.5
CDS CAA 72 bp TCTTCATCGTTGGTGTCCGGAAGGTCCAAGATGTCCTaGACTGAAAACCCCGTCTTTGTGTTGGTCAGCGAC +
Preference number: 6 (lower is better)
Translates to: SSSLVSGRSKMS*TENPVFVLVSD
Trigger: GTCGCTGACCAACACAAAGACGGGGTTTTCAGTCAAGGACATCTTGGACCTTCCGGACACCAACGATGAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067075.7
ENSMUST00000109970.5