RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NKX1-2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000048528

Ensembl transcript IDs: ENSMUST00000054562.4

Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CATCGCCTCGACCCCTCAGTGGCTTGTGTGGTTGTAGTCTGCAGGTaGCTTCTCCTCGCCCTCTGGTGGCGTCACCAGCAGTCGGAGGGA +
Preference number: 1 (lower is better)
Translates to: HRLDPSVACVVVVCR*LLLALWWRHQQSEG
Trigger: TCCCTCCGACTGCTGGTGACGCCACCAGAGGGCGAGGAGAAGTCACCTGCAGACTACAACCACACAAGCCACTGAGGGGTCGAGGCGATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR GCA 90 bp AGTCCTGCCACCTTTAAAGATTCAGTCCTTGGTGCTAGCAACTGGTaGCCAGGGCATCTTGGCTCCCTCTGGTCTCCATCCTGGGAACCC +
Preference number: 1 (lower is better)
Translates to: SPATFKDSVLGASNW*PGHLGSLWSPSWEP
Trigger: GGGTTCCCAGGATGGAGACCAGAGGGAGCCAAGATGCCCTGGGCACCAGTTGCTAGCACCAAGGACTGAATCTTTAAAGGTGGCAGGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR CCA 90 bp AGCAACTGGTGCCCAGGGCATCTTGGCTCCCTCTGGTCTCCATCCTaGGAACCCTTATTAGCCAGACACGGTAAAGAACAGAGCCCTCGA +
Preference number: 1 (lower is better)
Translates to: SNWCPGHLGSLWSPS*EPLLARHGKEQSPR
Trigger: TCGAGGGCTCTGTTCTTTACCGTGTCTGGCTAATAAGGGTTCCCAGGATGGAGACCAGAGGGAGCCAAGATGCCCTGGGCACCAGTTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR GCA 90 bp TCTGAAGACCAGGCTGGCCTCAAATTCACCAGATCCACCTGCCTCTaGCTCCCAAATGCTGGGATTAAAAGGCATGAACCTCCATCGCCT +
Preference number: 1 (lower is better)
Translates to: SEDQAGLKFTRSTCL*LPNAGIKRHEPPSP
Trigger: AGGCGATGGAGGTTCATGCCTTTTAATCCCAGCATTTGGGAGGCAGAGGCAGGTGGATCTGGTGAATTTGAGGCCAGCCTGGTCTTCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR CCA 90 bp ATAAGTCCTGCCACCTTTAAAGATTCAGTCCTTGGTGCTAGCAACTaGTGCCCAGGGCATCTTGGCTCCCTCTGGTCTCCATCCTGGGAA +
Preference number: 1 (lower is better)
Translates to: ISPATFKDSVLGASN*CPGHLGSLWSPSWE
Trigger: TTCCCAGGATGGAGACCAGAGGGAGCCAAGATGCCCTGGGCACCAGTTGCTAGCACCAAGGACTGAATCTTTAAAGGTGGCAGGACTTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR TCA 90 bp GGTTCCTCGTGCTCCAGCTTTGTTCAGGATTTGGGAGTTCCGTGCTaGGCCACTTCCAACGCCAGGAAGAAAAGTTTCTTCCTCTTCATA +
Preference number: 1 (lower is better)
Translates to: GSSCSSFVQDLGVPC*ATSNARKKSFFLFI
Trigger: TATGAAGAGGAAGAAACTTTTCTTCCTGGCGTTGGAAGTGGCTCAGCACGGAACTCCCAAATCCTGAACAAAGCTGGAGCACGAGGAACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR GCA 90 bp ACTAAGGTCGTGCATCTTGAAACCAGCCCACTCAACAACTGCATCTaGTTTGGGTTCCTCGTGCTCCAGCTTTGTTCAGGATTTGGGAGT +
Preference number: 1 (lower is better)
Translates to: TKVVHLETSPLNNCI*FGFLVLQLCSGFGS
Trigger: ACTCCCAAATCCTGAACAAAGCTGGAGCACGAGGAACCCAAAGCAGATGCAGTTGTTGAGTGGGCTGGTTTCAAGATGCACGACCTTAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR GCA 90 bp TCTACACACACACACACACACACACACACACACACACTAAGGTCGTaGATCTTGAAACCAGCCCACTCAACAACTGCATCTGCTTTGGGT +
Preference number: 1 (lower is better)
Translates to: STHTHTHTHTHTLRS*ILKPAHSTTASALG
Trigger: ACCCAAAGCAGATGCAGTTGTTGAGTGGGCTGGTTTCAAGATGCACGACCTTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR GCA 90 bp TGCTTGTGCTTTCAGAAATTTACGGCAATGTCTGCATCTGGGCCTTaGTTTGCTCCAGCTTGTCAGTTTGAAGTCCGTGAAAGTGTAGCA +
Preference number: 1 (lower is better)
Translates to: CLCFQKFTAMSASGP*FAPACQFEVRESVA
Trigger: TGCTACACTTTCACGGACTTCAAACTGACAAGCTGGAGCAAAGCAAGGCCCAGATGCAGACATTGCCGTAAATTTCTGAAAGCACAAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR TCA 90 bp ATTCTGGTACCTGAGAGGGTACCTTTCCCACTTAGTACAGGCCTTTaGCCTCTTTGTTCAGATCTTTGCGTATTTGAAGTTCTCTGTTCA +
Preference number: 1 (lower is better)
Translates to: ILVPERVPFPLSTGL*PLCSDLCVFEVLCS
Trigger: TGAACAGAGAACTTCAAATACGCAAAGATCTGAACAAAGAGGTCAAAGGCCTGTACTAAGTGGGAAAGGTACCCTCTCAGGTACCAGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR TCA 90 bp TTTGCGTATTTGAAGTTCTCTGTTCACAGATATGGATCCTGTTGCTaGGAACAAGTAGTCACGGAAGGAGTGTTTACACCGTGTCATACA +
Preference number: 1 (lower is better)
Translates to: FAYLKFSVHRYGSCC*EQVVTEGVFTPCHT
Trigger: TGTATGACACGGTGTAAACACTCCTTCCGTGACTACTTGTTCTCAGCAACAGGATCCATATCTGTGAACAGAGAACTTCAAATACGCAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR-3UTR GCA 90 bp TCAGGATTTGGGAGTTCCGTGCTGAGCCACTTCCAACGCCAGGAAGAAAAGTTTGGAGGGGGCGGTCAGTaGCCCTCTGTGAAGCGGGGA +
Preference number: 2 (lower is better)
Translates to: SGFGSSVLSHFQRQEEKFGGGGQ*PSVKRG
Trigger: TCCCCGCTTCACAGAGGGGCACTGACCGCCCCCTCC...AAACTTTTCTTCCTGGCGTTGGAAGTGGCTCAGCACGGAACTCCCAAATCCTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR-3UTR TCA 90 bp TTTGGGAGTTCCGTGCTGAGCCACTTCCAACGCCAGGAAGAAAAGTTTCTTCCTGTCAGTGCCCCTCTGTaGAGCGGGGACCCGCGTCAT +
Preference number: 2 (lower is better)
Translates to: FGSSVLSHFQRQEEKFLPVSAPL*SGDPRH
Trigger: ATGACGCGGGTCCCCGCTTCACAGAGGGGCACTGAC...AGGAAGAAACTTTTCTTCCTGGCGTTGGAAGTGGCTCAGCACGGAACTCCCAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR-3UTR CCA 90 bp CATCACAAAGACTCACACACAGACTTCAGGAGAGCCTTTGGGTCATCGCTCCCTCTTGGTGCTAGCAACTaGTGCCCAGGGCATCTTGGC +
Preference number: 2 (lower is better)
Translates to: HHKDSHTDFRRAFGSSLPLGASN*CPGHLG
Trigger: GCCAAGATGCCCTGGGCACCAGTTGCTAGCACCAAG...AGGGAGCGATGACCCAAAGGCTCTCCTGAAGTCTGTGTGTGAGTCTTTGTGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR-3UTR TCA 90 bp TACCTGAGAGGGTACCTTTCCCACTTAGTACAGGCCTTTGACCTCTTTGTTCAGTTGGGAGTTCCGTGCTaGGCCACTTCCAACGCCAGG +
Preference number: 2 (lower is better)
Translates to: YLRGYLSHLVQAFDLFVQLGVPC*ATSNAR
Trigger: CCTGGCGTTGGAAGTGGCTCAGCACGGAACTCCCAA...CTGAACAAAGAGGTCAAAGGCCTGTACTAAGTGGGAAAGGTACCCTCTCAGGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR CAA 90 bp AGGTCGTGCATCTTGAAACCAGCCCACTCAACAACTGCATCTGCTTaGGGTTCCTCGTGCTCCAGCTTTGTTCAGGATTTGGGAGTTCCG +
Preference number: 2 (lower is better)
Translates to: RSCILKPAHSTTASA*GSSCSSFVQDLGVP
Trigger: CGGAACTCCCAAATCCTGAACAAAGCTGGAGCACGAGGAACCCAAAGCAGATGCAGTTGTTGAGTGGGCTGGTTTCAAGATGCACGACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR-3UTR GCA 90 bp ACTTCAGGAGAGCCTTTGGGTCATCGCTCCCTTTTCTGTCCTTTTTGTGCATTTGGTGCTAGCAACTGGTaGCCAGGGCATCTTGGCTCC +
Preference number: 2 (lower is better)
Translates to: TSGEPLGHRSLFCPFCAFGASNW*PGHLGS
Trigger: GGAGCCAAGATGCCCTGGGCACCAGTTGCTAGCACC...AAATGCACAAAAAGGACAGAAAAGGGAGCGATGACCCAAAGGCTCTCCTGAAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR-3UTR CCA 90 bp CATCACAAAGACTCACACACAGACTTCAGGAGAGCCTTTGGGTCATCGCTCCCTGCCCCGTGTCTTCTCTaGGTGAATATAGGTACAGCG +
Preference number: 2 (lower is better)
Translates to: HHKDSHTDFRRAFGSSLPAPCLL*VNIGTA
Trigger: CGCTGTACCTATATTCACCCAGAGAAGACACGGGGC...AGGGAGCGATGACCCAAAGGCTCTCCTGAAGTCTGTGTGTGAGTCTTTGTGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR CAA 90 bp CACACACACACACACACACACACACACACACTAAGGTCGTGCATCTaGAAACCAGCCCACTCAACAACTGCATCTGCTTTGGGTTCCTCG +
Preference number: 2 (lower is better)
Translates to: HTHTHTHTHTLRSCI*KPAHSTTASALGSS
Trigger: CGAGGAACCCAAAGCAGATGCAGTTGTTGAGTGGGCTGGTTTCAAGATGCACGACCTTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR-3UTR GCA 90 bp GTAGCAGAACGGACAGATGGGCGCCAAGCACTGTACATCACAAAGACTCACACAGCTTTGGGTTCCTCGTaGTCCAGCTTTGTTCAGGAT +
Preference number: 2 (lower is better)
Translates to: VAERTDGRQALYITKTHTALGSS*SSFVQD
Trigger: ATCCTGAACAAAGCTGGAGCACGAGGAACCCAAAGC...TGTGTGAGTCTTTGTGATGTACAGTGCTTGGCGCCCATCTGTCCGTTCTGCTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR-3UTR CCA 90 bp GTAGCAGAACGGACAGATGGGCGCCAAGCACTGTACATCACAAAGACTCACACAGCTTTGTTCAGGATTTaGGAGTTCCGTGCTGAGCCA +
Preference number: 2 (lower is better)
Translates to: VAERTDGRQALYITKTHTALFRI*EFRAEP
Trigger: TGGCTCAGCACGGAACTCCCAAATCCTGAACAAAGC...TGTGTGAGTCTTTGTGATGTACAGTGCTTGGCGCCCATCTGTCCGTTCTGCTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR-3UTR TCA 90 bp ATTTGGGAGTTCCGTGCTGAGCCACTTCCAACGCCAGGAAGAAAAGTTTCTTCCATCACTCGTGAATTCTaGCTGAGCAGCAGTACCGGA +
Preference number: 2 (lower is better)
Translates to: IWEFRAEPLPTPGRKVSSITREF*LSSSTG
Trigger: TCCGGTACTGCTGCTCAGTCAGAATTCACGAGTGAT...GGAAGAAACTTTTCTTCCTGGCGTTGGAAGTGGCTCAGCACGGAACTCCCAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR-3UTR TCA 90 bp TTTACGGCAATGTCTGCATCTGGGCCTTGCTTTGCTCCAGCTTGTCAGTTTGAATGTTCTCAAAACCTGTaGGGTAACAGAGTTGCCCCG +
Preference number: 2 (lower is better)
Translates to: FTAMSASGPCFAPACQFECSQNL*GNRVAP
Trigger: CGGGGCAACTCTGTTACCTCACAGGTTTTGAGAACA...TTCAAACTGACAAGCTGGAGCAAAGCAAGGCCCAGATGCAGACATTGCCGTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR CAA 90 bp ATGGAGTCTACACACACACACACACACACACTAAGGTCGTGCATCTaGAAACCAGCCCACTCAACAATGGAGTCTACACACACACACACA +
Preference number: 2 (lower is better)
Translates to: MESTHTHTHTLRSCI*KPAHSTMESTHTHT
Trigger: TGTGTGTGTGTGTGTAGACTCCATTGTTGAGTGGGCTGGTTTCAAGATGCACGACCTTAGTGTGTGTGTGTGTGTGTGTGTAGACTCCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR-3UTR TCA 90 bp TCAGGATTTGGGAGTTCCGTGCTGAGCCACTTCCAACGCCAGGAAGAAAAGTTTAATCAAAGGGAAGAATaGGGTCCAGAAGCTGGAAAC +
Preference number: 2 (lower is better)
Translates to: SGFGSSVLSHFQRQEEKFNQREE*GPEAGN
Trigger: GTTTCCAGCTTCTGGACCTCATTCTTCCCTTTGATT...AAACTTTTCTTCCTGGCGTTGGAAGTGGCTCAGCACGGAACTCCCAAATCCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR-3UTR CCA 90 bp TACCTGAGAGGGTACCTTTCCCACTTAGTACAGGCCTTTGACCTCTTTGTTCAGCAGCCCACTCAACAATaGAGTCTACACACACACACA +
Preference number: 2 (lower is better)
Translates to: YLRGYLSHLVQAFDLFVQQPTQQ*SLHTHT
Trigger: TGTGTGTGTGTGTAGACTCCATTGTTGAGTGGGCTG...CTGAACAAAGAGGTCAAAGGCCTGTACTAAGTGGGAAAGGTACCCTCTCAGGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR-3UTR CCA 90 bp AAGCACTGTACATCACAAAGACTCACACACAGACTTCAGGAGAGCCTTTGGGTCACTTCGGGCCACAAATaGAGTCTACACACACACACA +
Preference number: 2 (lower is better)
Translates to: KHCTSQRLTHRLQESLWVTSGHK*SLHTHT
Trigger: TGTGTGTGTGTGTAGACTCCATTTGTGGCCCGAAGT...GACCCAAAGGCTCTCCTGAAGTCTGTGTGTGAGTCTTTGTGATGTACAGTGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR-3UTR CAA 90 bp CAAACTAGGGTAGATGGGGTCACCTGGGTCTCTGAGGTGTGTGACTACAAGACTGGTGCCCAGGGCATCTaGGCTCCCTCTGGTCTCCAT +
Preference number: 3 (lower is better)
Translates to: QTRVDGVTWVSEVCDYKTGAQGI*APSGLH
Trigger: ATGGAGACCAGAGGGAGCCAAGATGCCCTGGGCACC...AGTCTTGTAGTCACACACCTCAGAGACCCAGGTGACCCCATCTACCCTAGTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR CCA 72 bp TGCCCAGGGCATCTTGGCTCCCTCTGGTCTCCATCCTaGGAACCCTTATTAGCCAGACACGGTAAAGAACAG +
Preference number: 3 (lower is better)
Translates to: CPGHLGSLWSPS*EPLLARHGKEQ
Trigger: CTGTTCTTTACCGTGTCTGGCTAATAAGGGTTCCCAGGATGGAGACCAGAGGGAGCCAAGATGCCCTGGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR-3UTR CAA 90 bp CAGCACAAGGCTGAGTCTCCACCTCCTCTGACACCCGTGATTCTGGTACCTGAGGGCACCAGCTGTCCTTaGAGAAGTTACAATACAGTG +
Preference number: 3 (lower is better)
Translates to: QHKAESPPPLTPVILVPEGTSCP*RSYNTV
Trigger: CACTGTATTGTAACTTCTCAAAGGACAGCTGGTGCC...CTCAGGTACCAGAATCACGGGTGTCAGAGGAGGTGGAGACTCAGCCTTGTGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR-3UTR CAA 90 bp ACACACACACACACACACACACTAAGGTCGTGCATCTTGAAACCAGCCCACTCAACAACTGCATCTGCTTaGGGTTCCTCGTGCTCCAGC +
Preference number: 3 (lower is better)
Translates to: THTHTHTLRSCILKPAHSTTASA*GSSCSS
Trigger: GCTGGAGCACGAGGAACCCAAAGCAGATGCAGTTGT...TGAGTGGGCTGGTTTCAAGATGCACGACCTTAGTGTGTGTGTGTGTGTGTGTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR GCA 72 bp GTGCATCTTGAAACCAGCCCACTCAACAACTGCATCTaGTTTGGGTTCCTCGTGCTCCAGCTTTGTTCAGGA +
Preference number: 3 (lower is better)
Translates to: VHLETSPLNNCI*FGFLVLQLCSG
Trigger: TCCTGAACAAAGCTGGAGCACGAGGAACCCAAAGCAGATGCAGTTGTTGAGTGGGCTGGTTTCAAGATGCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR TCA 72 bp TGCTCCAGCTTTGTTCAGGATTTGGGAGTTCCGTGCTaGGCCACTTCCAACGCCAGGAAGAAAAGTTTCTTC +
Preference number: 3 (lower is better)
Translates to: CSSFVQDLGVPC*ATSNARKKSFF
Trigger: GAAGAAACTTTTCTTCCTGGCGTTGGAAGTGGCTCAGCACGGAACTCCCAAATCCTGAACAAAGCTGGAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR GCA 72 bp ACACACACACACACACACACACACACACTAAGGTCGTaGATCTTGAAACCAGCCCACTCAACAACTGCATCT +
Preference number: 3 (lower is better)
Translates to: THTHTHTHTLRS*ILKPAHSTTAS
Trigger: AGATGCAGTTGTTGAGTGGGCTGGTTTCAAGATGCACGACCTTAGTGTGTGTGTGTGTGTGTGTGTGTGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR GCA 72 bp GAGTCTACACACACACACACACACACACTAAGGTCGTaGATCTTGAAACCAGCCCACTCAACAATGGAGTCT +
Preference number: 3 (lower is better)
Translates to: ESTHTHTHTLRS*ILKPAHSTMES
Trigger: AGACTCCATTGTTGAGTGGGCTGGTTTCAAGATGCACGACCTTAGTGTGTGTGTGTGTGTGTGTGTAGACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR-3UTR CAA 90 bp TACCTGAGAGGGTACCTTTCCCACTTAGTACAGGCCTTTGACCTCTTTGTTCAGTTAAAGATTCAGTCCTaGGTGCTAGCAACTGGTGCC +
Preference number: 3 (lower is better)
Translates to: YLRGYLSHLVQAFDLFVQLKIQS*VLATGA
Trigger: GGCACCAGTTGCTAGCACCAAGGACTGAATCTTTAA...CTGAACAAAGAGGTCAAAGGCCTGTACTAAGTGGGAAAGGTACCCTCTCAGGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR CCA 72 bp TCACAAAGACTCACACACAGACTTCAGGAGAGCCTTTaGGTCATCGCTCCCTTTTCTGTCCTTTTTGTGCAT +
Preference number: 3 (lower is better)
Translates to: SQRLTHRLQESL*VIAPFSVLFVH
Trigger: ATGCACAAAAAGGACAGAAAAGGGAGCGATGACCCAAAGGCTCTCCTGAAGTCTGTGTGTGAGTCTTTGTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR GCA 72 bp TTTCAGAAATTTACGGCAATGTCTGCATCTGGGCCTTaGTTTGCTCCAGCTTGTCAGTTTGAAGTCCGTGAA +
Preference number: 3 (lower is better)
Translates to: FQKFTAMSASGP*FAPACQFEVRE
Trigger: TTCACGGACTTCAAACTGACAAGCTGGAGCAAAGCAAGGCCCAGATGCAGACATTGCCGTAAATTTCTGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR GCA 72 bp GTTATGCTTGTGCTTTCAGAAATTTACGGCAATGTCTaGATCTGGGCCTTGCTTTGCTCCAGCTTGTCAGTT +
Preference number: 3 (lower is better)
Translates to: VMLVLSEIYGNV*IWALLCSSLSV
Trigger: AACTGACAAGCTGGAGCAAAGCAAGGCCCAGATGCAGACATTGCCGTAAATTTCTGAAAGCACAAGCATAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR CCA 72 bp CGAAGTAAATCAAAGGGAAGAATGAGGTCCAGAAGCTaGAAACGTTTAAAACAGCCTGGTCTGGACGGACAT +
Preference number: 3 (lower is better)
Translates to: RSKSKGRMRSRS*KRLKQPGLDGH
Trigger: ATGTCCGTCCAGACCAGGCTGTTTTAAACGTTTCCAGCTTCTGGACCTCATTCTTCCCTTTGATTTACTTCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR TCA 72 bp TTGAAGTTCTCTGTTCACAGATATGGATCCTGTTGCTaGGAACAAGTAGTCACGGAAGGAGTGTTTACACCG +
Preference number: 3 (lower is better)
Translates to: LKFSVHRYGSCC*EQVVTEGVFTP
Trigger: CGGTGTAAACACTCCTTCCGTGACTACTTGTTCTCAGCAACAGGATCCATATCTGTGAACAGAGAACTTCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR TCA 72 bp CCTGAGAGGGTACCTTTCCCACTTAGTACAGGCCTTTaGCCTCTTTGTTCAGATCTTTGCGTATTTGAAGTT +
Preference number: 3 (lower is better)
Translates to: PERVPFPLSTGL*PLCSDLCVFEV
Trigger: AACTTCAAATACGCAAAGATCTGAACAAAGAGGTCAAAGGCCTGTACTAAGTGGGAAAGGTACCCTCTCAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR TCA 72 bp AGGCCTTTGACCTCTTTGTTCAGATCTTTGCGTATTTaGAGTTCTCTGTTCACAGATATGGATCCTGTTGCT +
Preference number: 3 (lower is better)
Translates to: RPLTSLFRSLRI*SSLFTDMDPVA
Trigger: AGCAACAGGATCCATATCTGTGAACAGAGAACTTCAAATACGCAAAGATCTGAACAAAGAGGTCAAAGGCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
CDS-3UTR TCA 90 bp ATCTTGAAACCAGCCCACTCAACAACTGCATCTGCTTTGGGTTCCTCGTGCTCCTGCCCGGGCCTCTGGTaGGCCCTCATGGACCCCCTG +
Preference number: 4 (lower is better)
Translates to: ILKPAHSTTASALGSSCSCPGLW*ALMDPL
Trigger: CAGGGGGTCCATGAGGGCTCACCAGAGGCCCGGGCA...GGAGCACGAGGAACCCAAAGCAGATGCAGTTGTTGAGTGGGCTGGTTTCAAGAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
CDS-3UTR CCA 90 bp ACACTAAGGTCGTGCATCTTGAAACCAGCCCACTCAACAACTGCATCTGCTTTGGAGAGGGGGCCGCCTTaGCCCCGACGTCCTGCCATG +
Preference number: 4 (lower is better)
Translates to: TLRSCILKPAHSTTASALERGPP*PRRPAM
Trigger: CATGGCAGGACGTCGGGGCCAAGGCGGCCCCCTCTC...CAAAGCAGATGCAGTTGTTGAGTGGGCTGGTTTCAAGATGCACGACCTTAGTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
CDS-3UTR CCA 90 bp ATTTGGGAGTTCCGTGCTGAGCCACTTCCAACGCCAGGAAGAAAAGTTTCTTCCAGTGCGCGCGCGCCTTaGCTTGGCGCAGCTGGACTC +
Preference number: 4 (lower is better)
Translates to: IWEFRAEPLPTPGRKVSSSARAP*LGAAGL
Trigger: GAGTCCAGCTGCGCCAAGCCAAGGCGCGCGCGCACT...GGAAGAAACTTTTCTTCCTGGCGTTGGAAGTGGCTCAGCACGGAACTCCCAAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
CDS-3UTR TCA 90 bp ATCTTGAAACCAGCCCACTCAACAACTGCATCTGCTTTGGGTTCCTCGTGCTCCAAGGAGATCTTGTGGTaGGAGGGGGCCGCCTTGGCC +
Preference number: 4 (lower is better)
Translates to: ILKPAHSTTASALGSSCSKEILW*EGAALA
Trigger: GGCCAAGGCGGCCCCCTCTCACCACAAGATCTCCTT...GGAGCACGAGGAACCCAAAGCAGATGCAGTTGTTGAGTGGGCTGGTTTCAAGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
CDS-3UTR CCA 90 bp CAAACTAGGGTAGATGGGGTCACCTGGGTCTCTGAGGTGTGTGACTACAAGACTTCTGGTGAGCCCTCATaGACCCCCTGCCAGCGCTCT +
Preference number: 4 (lower is better)
Translates to: QTRVDGVTWVSEVCDYKTSGEPS*TPCQRS
Trigger: AGAGCGCTGGCAGGGGGTCCATGAGGGCTCACCAGA...AGTCTTGTAGTCACACACCTCAGAGACCCAGGTGACCCCATCTACCCTAGTTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
CDS-3UTR CCA 90 bp ACACACACACACACACACACACTAAGGTCGTGCATCTTGAAACCAGCCCACTCAGGCGCCGTCGGCCCCTaGGTTCTGCTTCTTCCACTT +
Preference number: 4 (lower is better)
Translates to: THTHTHTLRSCILKPAHSGAVGP*VLLLPL
Trigger: AAGTGGAAGAAGCAGAACCCAGGGGCCGACGGCGCC...TGAGTGGGCTGGTTTCAAGATGCACGACCTTAGTGTGTGTGTGTGTGTGTGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
CDS-3UTR CCA 90 bp ATCTTGAAACCAGCCCACTCAACAACTGCATCTGCTTTGGGTTCCTCGTGCTCCGGAGGGCCCAAGGAATaGAGTGAAGGGACTCCCGTT +
Preference number: 4 (lower is better)
Translates to: ILKPAHSTTASALGSSCSGGPKE*SEGTPV
Trigger: AACGGGAGTCCCTTCACTCCATTCCTTGGGCCCTCC...GGAGCACGAGGAACCCAAAGCAGATGCAGTTGTTGAGTGGGCTGGTTTCAAGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
CDS-3UTR CCA 90 bp GTAGCAGAACGGACAGATGGGCGCCAAGCACTGTACATCACAAAGACTCACACAGGAAGAGGACGTTGGTaGCAGGATAGGTGGGGAAAG +
Preference number: 4 (lower is better)
Translates to: VAERTDGRQALYITKTHTGRGRW*QDRWGK
Trigger: CTTTCCCCACCTATCCTGCCACCAACGTCCTCTTCC...TGTGTGAGTCTTTGTGATGTACAGTGCTTGGCGCCCATCTGTCCGTTCTGCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR CAA 72 bp CAACTGCATCTGCTTTGGGTTCCTCGTGCTCCAGCTTaGTTCAGGATTTGGGAGTTCCGTGCTGAGCCACTT +
Preference number: 4 (lower is better)
Translates to: QLHLLWVPRAPA*FRIWEFRAEPL
Trigger: AAGTGGCTCAGCACGGAACTCCCAAATCCTGAACAAAGCTGGAGCACGAGGAACCCAAAGCAGATGCAGTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
CDS-3UTR TCA 90 bp TTTAAGGGAGAGGGAAGGAGGGTTATTTTCCTATCATCCCTCATAATAGGAAAGGCCCAAGGAATGGAGTaGAGGGACTCCCGTTGGCGG +
Preference number: 4 (lower is better)
Translates to: FKGEGRRVIFLSSLIIGKAQGME*RDSRWR
Trigger: CCGCCAACGGGAGTCCCTTCACTCCATTCCTTGGGC...CTTTCCTATTATGAGGGATGATAGGAAAATAACCCTCCTTCCCTCTCCCTTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
CDS-3UTR CCA 90 bp GTAGCAGAACGGACAGATGGGCGCCAAGCACTGTACATCACAAAGACTCACACACTTCTAAACTTTTCTTaGCTTCCAGGGCAGCGAGAC +
Preference number: 4 (lower is better)
Translates to: VAERTDGRQALYITKTHTLLNFS*LPGQRD
Trigger: GTCTCGCTGCCCTGGAAGCCAAGAAAAGTTTAGAAG...TGTGTGAGTCTTTGTGATGTACAGTGCTTGGCGCCCATCTGTCCGTTCTGCTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
CDS-3UTR CCA 90 bp ACACTAAGGTCGTGCATCTTGAAACCAGCCCACTCAACAACTGCATCTGCTTTGTGGTGGCAGGATAGGTaGGGAAAGTCTGATAGGGCA +
Preference number: 4 (lower is better)
Translates to: TLRSCILKPAHSTTASALWWQDR*GKSDRA
Trigger: TGCCCTATCAGACTTTCCCCACCTATCCTGCCACCA...CAAAGCAGATGCAGTTGTTGAGTGGGCTGGTTTCAAGATGCACGACCTTAGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR CAA 72 bp ATCTTGAAACCAGCCCACTCAACAACTGCATCTGCTTaGGGTTCCTCGTGCTCCAGCTTTGTTCAGGATTTG +
Preference number: 4 (lower is better)
Translates to: ILKPAHSTTASA*GSSCSSFVQDL
Trigger: CAAATCCTGAACAAAGCTGGAGCACGAGGAACCCAAAGCAGATGCAGTTGTTGAGTGGGCTGGTTTCAAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR CAA 72 bp ACACACACACACACACACACACTAAGGTCGTGCATCTaGAAACCAGCCCACTCAACAACTGCATCTGCTTTG +
Preference number: 4 (lower is better)
Translates to: THTHTHTLRSCI*KPAHSTTASAL
Trigger: CAAAGCAGATGCAGTTGTTGAGTGGGCTGGTTTCAAGATGCACGACCTTAGTGTGTGTGTGTGTGTGTGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR CAA 72 bp ACACACACACACACACACACACTAAGGTCGTGCATCTaGAAACCAGCCCACTCAACAATGGAGTCTACACAC +
Preference number: 4 (lower is better)
Translates to: THTHTHTLRSCI*KPAHSTMESTH
Trigger: GTGTGTAGACTCCATTGTTGAGTGGGCTGGTTTCAAGATGCACGACCTTAGTGTGTGTGTGTGTGTGTGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR CAA 72 bp ATCACAAAGACTCACACACAGACTTCAGGAGAGCCTTaGGGTCATCGCTCCCTTTTCTGTCCTTTTTGTGCA +
Preference number: 4 (lower is better)
Translates to: ITKTHTQTSGEP*GHRSLFCPFCA
Trigger: TGCACAAAAAGGACAGAAAAGGGAGCGATGACCCAAAGGCTCTCCTGAAGTCTGTGTGTGAGTCTTTGTGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR CAA 72 bp AGAAATTTACGGCAATGTCTGCATCTGGGCCTTGCTTaGCTCCAGCTTGTCAGTTTGAAGTCCGTGAAAGTG +
Preference number: 4 (lower is better)
Translates to: RNLRQCLHLGLA*LQLVSLKSVKV
Trigger: CACTTTCACGGACTTCAAACTGACAAGCTGGAGCAAAGCAAGGCCCAGATGCAGACATTGCCGTAAATTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
CDS-3UTR GCA 90 bp TTTAAGGGAGAGGGAAGGAGGGTTATTTTCCTATCATCCCTCATAATAGGAAAGCCCGAACAAGCATCTTaGCCTGCTTCCACCTCTTCT +
Preference number: 4 (lower is better)
Translates to: FKGEGRRVIFLSSLIIGKPEQAS*PASTSS
Trigger: AGAAGAGGTGGAAGCAGGGCAAGATGCTTGTTCGGG...CTTTCCTATTATGAGGGATGATAGGAAAATAACCCTCCTTCCCTCTCCCTTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
3UTR CAA 72 bp ATAATTAGGTTTAATTTTGTTTGTTTGTTTTGTGTTTaGCGAGACAGGGTTTCTTTGTGTAGCCCTGGATGT +
Preference number: 4 (lower is better)
Translates to: IIRFNFVCLFCV*RDRVSLCSPGC
Trigger: ACATCCAGGGCTACACAAAGAAACCCTGTCTCGCAAAACACAAAACAAACAAACAAAATTAAACCTAATTAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
CDS GCA 90 bp CCCACCGCTACTGCCCGGGCCTCTGGTGAGCCCTCATGGACCCCCTaGCAGCGCTCTGGCTGGTGCGCGCGCCCCGCATCCTCAGCTTCC +
Preference number: 5 (lower is better)
Translates to: PTATARASGEPSWTP*QRSGWCARPASSAS
Trigger: GGAAGCTGAGGATGCGGGGCGCGCGCACCAGCCAGAGCGCTGGCAGGGGGTCCATGAGGGCTCACCAGAGGCCCGGGCAGTAGCGGTGGG
73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
CDS GCA 90 bp TGGCTGGTGCGCGCGCCCCGCATCCTCAGCTTCCTCCTCCTCCTCTaGCTCGGAGCCCTCCACCGGAGACCCGGGGTCAATGCCTCGGCC +
Preference number: 5 (lower is better)
Translates to: WLVRAPRILSFLLLL*LGALHRRPGVNASA
Trigger: GGCCGAGGCATTGACCCCGGGTCTCCGGTGGAGGGCTCCGAGGCAGAGGAGGAGGAGGAAGCTGAGGATGCGGGGCGCGCGCACCAGCCA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
CDS-3UTR CAA 90 bp TCAGGATTTGGGAGTTCCGTGCTGAGCCACTTCCAACGCCAGGAAGAAAAGTTTCAGTGCGCGCGCGCCTaGGCTTGGCGCAGCTGGACT +
Preference number: 5 (lower is better)
Translates to: SGFGSSVLSHFQRQEEKFQCARA*AWRSWT
Trigger: AGTCCAGCTGCGCCAAGCCAAGGCGCGCGCGCACTG...AAACTTTTCTTCCTGGCGTTGGAAGTGGCTCAGCACGGAACTCCCAAATCCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
CDS-3UTR CAA 90 bp ACTGTACATCACAAAGACTCACACACAGACTTCAGGAGAGCCTTTGGGTCATCGGTGAAGGGACTCCCGTaGGCGGCGGTCGTCAGCGGG +
Preference number: 5 (lower is better)
Translates to: TVHHKDSHTDFRRAFGSSVKGLP*AAVVSG
Trigger: CCCGCTGACGACCGCCGCCAACGGGAGTCCCTTCAC...CGATGACCCAAAGGCTCTCCTGAAGTCTGTGTGTGAGTCTTTGTGATGTACAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
CDS-3UTR CAA 90 bp AAGCACTGTACATCACAAAGACTCACACACAGACTTCAGGAGAGCCTTTGGGTCAGCTCGCGTGAATTTTaGCGGATCCAAGATGTCCAA +
Preference number: 5 (lower is better)
Translates to: KHCTSQRLTHRLQESLWVSSREF*RIQDVQ
Trigger: TTGGACATCTTGGATCCGCAAAAATTCACGCGAGCT...GACCCAAAGGCTCTCCTGAAGTCTGTGTGTGAGTCTTTGTGATGTACAGTGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
CDS GCA 72 bp ACTGCCCGGGCCTCTGGTGAGCCCTCATGGACCCCCTaGCAGCGCTCTGGCTGGTGCGCGCGCCCCGCATCC +
Preference number: 6 (lower is better)
Translates to: TARASGEPSWTP*QRSGWCARPAS
Trigger: GGATGCGGGGCGCGCGCACCAGCCAGAGCGCTGGCAGGGGGTCCATGAGGGCTCACCAGAGGCCCGGGCAGT
75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
CDS CCA 72 bp GGTGAGCCCTCATGGACCCCCTGCCAGCGCTCTGGCTaGTGCGCGCGCCCCGCATCCTCAGCTTCCTCCTCC +
Preference number: 6 (lower is better)
Translates to: GEPSWTPCQRSG*CARPASSASSS
Trigger: GGAGGAGGAAGCTGAGGATGCGGGGCGCGCGCACCAGCCAGAGCGCTGGCAGGGGGTCCATGAGGGCTCACC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
CDS TCA 72 bp CTCTTCCGTTCCCACCGCTACTGCCCGGGCCTCTGGTaGGCCCTCATGGACCCCCTGCCAGCGCTCTGGCTG +
Preference number: 6 (lower is better)
Translates to: LFRSHRYCPGLW*ALMDPLPALWL
Trigger: CAGCCAGAGCGCTGGCAGGGGGTCCATGAGGGCTCACCAGAGGCCCGGGCAGTAGCGGTGGGAACGGAAGAG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
CDS CAA 90 bp CCCGAACAAGCATCTTGCCCTGCTTCCACCTCTTCTAAACTTTTCTaGGCTTCCAGGGCAGCGAGACGCACCGGCGGGAGGGCAGCTCGC +
Preference number: 6 (lower is better)
Translates to: PEQASCPASTSSKLF*ASRAARRTGGRAAR
Trigger: GCGAGCTGCCCTCCCGCCGGTGCGTCTCGCTGCCCTGGAAGCCAAGAAAAGTTTAGAAGAGGTGGAAGCAGGGCAAGATGCTTGTTCGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
CDS CAA 90 bp CAGGGCAGCGAGACGCACCGGCGGGAGGGCAGCTCGCGTGAATTTTaGCGGATCCAAGATGTCCAAGACAGAGAAGGAGATCTTGTGGTG +
Preference number: 6 (lower is better)
Translates to: QGSETHRREGSSREF*RIQDVQDREGDLVV
Trigger: CACCACAAGATCTCCTTCTCTGTCTTGGACATCTTGGATCCGCAAAAATTCACGCGAGCTGCCCTCCCGCCGGTGCGTCTCGCTGCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
CDS GCA 72 bp AGACGCACCGGCGGGAGGGCAGCTCGCGTGAATTTTTaGGGATCCAAGATGTCCAAGACAGAGAAGGAGATC +
Preference number: 6 (lower is better)
Translates to: RRTGGRAARVNF*GSKMSKTEKEI
Trigger: GATCTCCTTCTCTGTCTTGGACATCTTGGATCCGCAAAAATTCACGCGAGCTGCCCTCCCGCCGGTGCGTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
CDS CAA 72 bp GAGACGCACCGGCGGGAGGGCAGCTCGCGTGAATTTTaGCGGATCCAAGATGTCCAAGACAGAGAAGGAGAT +
Preference number: 6 (lower is better)
Translates to: ETHRREGSSREF*RIQDVQDREGD
Trigger: ATCTCCTTCTCTGTCTTGGACATCTTGGATCCGCAAAAATTCACGCGAGCTGCCCTCCCGCCGGTGCGTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4
CDS GCA 72 bp TCCTGTGACCCGATTGGATTCCCCGAACAAGCATCTTaGCCTGCTTCCACCTCTTCTAAACTTTTCTTGGCT +
Preference number: 6 (lower is better)
Translates to: SCDPIGFPEQAS*PASTSSKLFLA
Trigger: AGCCAAGAAAAGTTTAGAAGAGGTGGAAGCAGGGCAAGATGCTTGTTCGGGGAATCCAATCGGGTCACAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054562.4