RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NKX1-1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029112

Ensembl transcript IDs: ENSMUST00000173348.2

Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp GACAGGAAGGGCAGCTGCGCAGCACACACCAGCCCTCCTGGGCTGTaGGCCGGGTACCCGGCCGGGCCGTGCAAGGCGAGCGGAGCGCCC +
Preference number: 5 (lower is better)
Translates to: DRKGSCAAHTSPPGL*AGYPAGPCKASGAP
Trigger: GGGCGCTCCGCTCGCCTTGCACGGCCCGGCCGGGTACCCGGCGCACAGCCCAGGAGGGCTGGTGTGTGCTGCGCAGCTGCCCTTCCTGTC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173348.2
CDS CCA 90 bp CGGGCTGGACAGGAAGGGCAGCTGCGCAGCACACACCAGCCCTCCTaGGCTGTGCGCCGGGTACCCGGCCGGGCCGTGCAAGGCGAGCGG +
Preference number: 5 (lower is better)
Translates to: RAGQEGQLRSTHQPS*AVRRVPGRAVQGER
Trigger: CCGCTCGCCTTGCACGGCCCGGCCGGGTACCCGGCGCACAGCCCAGGAGGGCTGGTGTGTGCTGCGCAGCTGCCCTTCCTGTCCAGCCCG
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173348.2
CDS CCA 90 bp GCCGGGCCGCTCCAGCCCCCTCTGGCACCGCGGGAACAGTGTCGCTaGCCGCGAGCGGTGGCACTCCAGCCCGGGGAAAGATGGGCAGCT +
Preference number: 5 (lower is better)
Translates to: AGPLQPPLAPREQCR*PRAVALQPGERWAA
Trigger: AGCTGCCCATCTTTCCCCGGGCTGGAGTGCCACCGCTCGCGGCCAGCGACACTGTTCCCGCGGTGCCAGAGGGGGCTGGAGCGGCCCGGC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173348.2
CDS CCA 90 bp GCCTCGGCTTCCCGGACTTCGAGTCCGAGCCCGTGCGCTTCCGCTTaGGCTTGGTGGTCACGGCGGCGCCCTGCGGGGTACTCCCCGCGC +
Preference number: 5 (lower is better)
Translates to: ASASRTSSPSPCASA*AWWSRRRPAGYSPR
Trigger: GCGCGGGGAGTACCCCGCAGGGCGCCGCCGTGACCACCAAGCCCAAGCGGAAGCGCACGGGCTCGGACTCGAAGTCCGGGAAGCCGAGGC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173348.2
CDS GCA 90 bp CGTCCTCGTCCTCCGGCGCTTCATCCTCGCTGTCCGCGGTCGGGCTaGGACCGCTGCCGCTGCTGTAGCCGTTGGCCTCGGCCTCGTCCG +
Preference number: 5 (lower is better)
Translates to: RPRPPALHPRCPRSG*DRCRCCSRWPRPRP
Trigger: CGGACGAGGCCGAGGCCAACGGCTACAGCAGCGGCAGCGGTCGCAGCCCGACCGCGGACAGCGAGGATGAAGCGCCGGAGGACGAGGACG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173348.2
CDS GCA 90 bp CCTCCGGCGCTTCATCCTCGCTGTCCGCGGTCGGGCTGCGACCGCTaGCGCTGCTGTAGCCGTTGGCCTCGGCCTCGTCCGCCCTGTAAG +
Preference number: 5 (lower is better)
Translates to: PPALHPRCPRSGCDR*RCCSRWPRPRPPCK
Trigger: CTTACAGGGCGGACGAGGCCGAGGCCAACGGCTACAGCAGCGGCAGCGGTCGCAGCCCGACCGCGGACAGCGAGGATGAAGCGCCGGAGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173348.2
CDS GCA 90 bp GCGCTTCATCCTCGCTGTCCGCGGTCGGGCTGCGACCGCTGCCGCTaGTGTAGCCGTTGGCCTCGGCCTCGTCCGCCCTGTAAGAGTCCC +
Preference number: 5 (lower is better)
Translates to: ALHPRCPRSGCDRCR*CSRWPRPRPPCKSP
Trigger: GGGACTCTTACAGGGCGGACGAGGCCGAGGCCAACGGCTACAGCAGCGGCAGCGGTCGCAGCCCGACCGCGGACAGCGAGGATGAAGCGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173348.2
CDS CCA 90 bp AGCCCCCTCTGGCACCGCGGGAACAGTGTCGCTGGCCGCGAGCGGTaGCACTCCAGCCCGGGGAAAGATGGGCAGCTCAGCTCGTCCGTC +
Preference number: 5 (lower is better)
Translates to: SPLWHRGNSVAGRER*HSSPGKDGQLSSSV
Trigger: GACGGACGAGCTGAGCTGCCCATCTTTCCCCGGGCTGGAGTGCCACCGCTCGCGGCCAGCGACACTGTTCCCGCGGTGCCAGAGGGGGCT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173348.2
CDS CCA 90 bp CGTACGTCTGCGAGCCCAGCACGAAGGGCGACAGCACGGCCGGGCTaGACAGGAAGGGCAGCTGCGCAGCACACACCAGCCCTCCTGGGC +
Preference number: 5 (lower is better)
Translates to: RTSASPARRATARPG*TGRAAAQHTPALLG
Trigger: GCCCAGGAGGGCTGGTGTGTGCTGCGCAGCTGCCCTTCCTGTCCAGCCCGGCCGTGCTGTCGCCCTTCGTGCTGGGCTCGCAGACGTACG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173348.2
CDS TCA 90 bp CGGGCACCACAGGGCCCAGTAGCACGCAGCGGCGTCTCCTACTGTTaGACTTGTTGGGATCTAGGATGTCCAACACGGAGAAGGAGGTGG +
Preference number: 5 (lower is better)
Translates to: RAPQGPVARSGVSYC*TCWDLGCPTRRRRW
Trigger: CCACCTCCTTCTCCGTGTTGGACATCCTAGATCCCAACAAGTTCAACAGTAGGAGACGCCGCTGCGTGCTACTGGGCCCTGTGGTGCCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173348.2
CDS GCA 72 bp CCTCCTGGGCTGTGCGCCGGGTACCCGGCCGGGCCGTaGAAGGCGAGCGGAGCGCCCATGGGAGGCGAGGGG +
Preference number: 6 (lower is better)
Translates to: PPGLCAGYPAGP*KASGAPMGGEG
Trigger: CCCCTCGCCTCCCATGGGCGCTCCGCTCGCCTTGCACGGCCCGGCCGGGTACCCGGCGCACAGCCCAGGAGG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173348.2
CDS GCA 72 bp CCTCGCTGTCCGCGGTCGGGCTGCGACCGCTGCCGCTaGTGTAGCCGTTGGCCTCGGCCTCGTCCGCCCTGT +
Preference number: 6 (lower is better)
Translates to: PRCPRSGCDRCR*CSRWPRPRPPC
Trigger: ACAGGGCGGACGAGGCCGAGGCCAACGGCTACAGCAGCGGCAGCGGTCGCAGCCCGACCGCGGACAGCGAGG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173348.2
CDS CAA 90 bp GGCTTCCCGGACTTCGAGTCCGAGCCCGTGCGCTTCCGCTTGGGCTaGGTGGTCACGGCGGCGCCCTGCGGGGTACTCCCCGCGCTCCCC +
Preference number: 6 (lower is better)
Translates to: GFPDFESEPVRFRLG*VVTAAPCGVLPALP
Trigger: GGGGAGCGCGGGGAGTACCCCGCAGGGCGCCGCCGTGACCACCAAGCCCAAGCGGAAGCGCACGGGCTCGGACTCGAAGTCCGGGAAGCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173348.2
CDS CAA 90 bp CGCCTCGGCTTCCCGGACTTCGAGTCCGAGCCCGTGCGCTTCCGCTaGGGCTTGGTGGTCACGGCGGCGCCCTGCGGGGTACTCCCCGCG +
Preference number: 6 (lower is better)
Translates to: RLGFPDFESEPVRFR*GLVVTAAPCGVLPA
Trigger: CGCGGGGAGTACCCCGCAGGGCGCCGCCGTGACCACCAAGCCCAAGCGGAAGCGCACGGGCTCGGACTCGAAGTCCGGGAAGCCGAGGCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173348.2
CDS GCA 72 bp CCTCCGGCGCTTCATCCTCGCTGTCCGCGGTCGGGCTaGGACCGCTGCCGCTGCTGTAGCCGTTGGCCTCGG +
Preference number: 6 (lower is better)
Translates to: PPALHPRCPRSG*DRCRCCSRWPR
Trigger: CCGAGGCCAACGGCTACAGCAGCGGCAGCGGTCGCAGCCCGACCGCGGACAGCGAGGATGAAGCGCCGGAGG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173348.2
CDS GCA 72 bp GTCCCCAGCACTTGTAGGCTCAGCTCCCGCGGCCGCTaGGACTCCTGTGGCGGCGGAGAGGGCTCGGCGTTC +
Preference number: 6 (lower is better)
Translates to: VPSTCRLSSRGR*DSCGGGEGSAF
Trigger: GAACGCCGAGCCCTCTCCGCCGCCACAGGAGTCGCAGCGGCCGCGGGAGCTGAGCCTACAAGTGCTGGGGAC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173348.2
CDS GCA 72 bp CTTCATCCTCGCTGTCCGCGGTCGGGCTGCGACCGCTaGCGCTGCTGTAGCCGTTGGCCTCGGCCTCGTCCG +
Preference number: 6 (lower is better)
Translates to: LHPRCPRSGCDR*RCCSRWPRPRP
Trigger: CGGACGAGGCCGAGGCCAACGGCTACAGCAGCGGCAGCGGTCGCAGCCCGACCGCGGACAGCGAGGATGAAG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173348.2
CDS GCA 72 bp CCCCGAGACCGCCGCTGCCTCCCCGAGGCTCCTCCGTaGCCTGAGCATCCTGCACCTCGGGCGCTTCTTCCT +
Preference number: 6 (lower is better)
Translates to: PRDRRCLPEAPP*PEHPAPRALLP
Trigger: AGGAAGAAGCGCCCGAGGTGCAGGATGCTCAGGGCACGGAGGAGCCTCGGGGAGGCAGCGGCGGTCTCGGGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173348.2
CDS GCA 72 bp CACGCCTCGGCTTCCCGGACTTCGAGTCCGAGCCCGTaGGCTTCCGCTTGGGCTTGGTGGTCACGGCGGCGC +
Preference number: 6 (lower is better)
Translates to: HASASRTSSPSP*ASAWAWWSRRR
Trigger: GCGCCGCCGTGACCACCAAGCCCAAGCGGAAGCGCACGGGCTCGGACTCGAAGTCCGGGAAGCCGAGGCGTG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173348.2
CDS CCA 72 bp CTCCAGCCCCCTCTGGCACCGCGGGAACAGTGTCGCTaGCCGCGAGCGGTGGCACTCCAGCCCGGGGAAAGA +
Preference number: 6 (lower is better)
Translates to: LQPPLAPREQCR*PRAVALQPGER
Trigger: TCTTTCCCCGGGCTGGAGTGCCACCGCTCGCGGCCAGCGACACTGTTCCCGCGGTGCCAGAGGGGGCTGGAG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173348.2
CDS CCA 72 bp ACTTCGAGTCCGAGCCCGTGCGCTTCCGCTTGGGCTTaGTGGTCACGGCGGCGCCCTGCGGGGTACTCCCCG +
Preference number: 6 (lower is better)
Translates to: TSSPSPCASAWA*WSRRRPAGYSP
Trigger: CGGGGAGTACCCCGCAGGGCGCCGCCGTGACCACCAAGCCCAAGCGGAAGCGCACGGGCTCGGACTCGAAGT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173348.2
CDS TCA 72 bp AGACCGCCGCTGCCTCCCCGAGGCTCCTCCGTGCCCTaGGCATCCTGCACCTCGGGCGCTTCTTCCTCGTCC +
Preference number: 6 (lower is better)
Translates to: RPPLPPRGSSVP*ASCTSGASSSS
Trigger: GGACGAGGAAGAAGCGCCCGAGGTGCAGGATGCTCAGGGCACGGAGGAGCCTCGGGGAGGCAGCGGCGGTCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173348.2
CDS CCA 72 bp TGGCACCGCGGGAACAGTGTCGCTGGCCGCGAGCGGTaGCACTCCAGCCCGGGGAAAGATGGGCAGCTCAGC +
Preference number: 6 (lower is better)
Translates to: WHRGNSVAGRER*HSSPGKDGQLS
Trigger: GCTGAGCTGCCCATCTTTCCCCGGGCTGGAGTGCCACCGCTCGCGGCCAGCGACACTGTTCCCGCGGTGCCA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173348.2
CDS CAA 90 bp ACAGGGCCCAGTAGCACGCAGCGGCGTCTCCTACTGTTGAACTTGTaGGGATCTAGGATGTCCAACACGGAGAAGGAGGTGGGGCGCGGG +
Preference number: 6 (lower is better)
Translates to: TGPSSTQRRLLLLNL*GSRMSNTEKEVGRG
Trigger: CCCGCGCCCCACCTCCTTCTCCGTGTTGGACATCCTAGATCCCAACAAGTTCAACAGTAGGAGACGCCGCTGCGTGCTACTGGGCCCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173348.2
CDS CAA 90 bp ACCACAGGGCCCAGTAGCACGCAGCGGCGTCTCCTACTGTTGAACTaGTTGGGATCTAGGATGTCCAACACGGAGAAGGAGGTGGGGCGC +
Preference number: 6 (lower is better)
Translates to: TTGPSSTQRRLLLLN*LGSRMSNTEKEVGR
Trigger: GCGCCCCACCTCCTTCTCCGTGTTGGACATCCTAGATCCCAACAAGTTCAACAGTAGGAGACGCCGCTGCGTGCTACTGGGCCCTGTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173348.2
CDS CAA 90 bp GCGGGCACCACAGGGCCCAGTAGCACGCAGCGGCGTCTCCTACTGTaGAACTTGTTGGGATCTAGGATGTCCAACACGGAGAAGGAGGTG +
Preference number: 6 (lower is better)
Translates to: AGTTGPSSTQRRLLL*NLLGSRMSNTEKEV
Trigger: CACCTCCTTCTCCGTGTTGGACATCCTAGATCCCAACAAGTTCAACAGTAGGAGACGCCGCTGCGTGCTACTGGGCCCTGTGGTGCCCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173348.2
CDS CAA 72 bp ACAGGGCCCAGTAGCACGCAGCGGCGTCTCCTACTGTaGAACTTGTTGGGATCTAGGATGTCCAACACGGAG +
Preference number: 6 (lower is better)
Translates to: TGPSSTQRRLLL*NLLGSRMSNTE
Trigger: CTCCGTGTTGGACATCCTAGATCCCAACAAGTTCAACAGTAGGAGACGCCGCTGCGTGCTACTGGGCCCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173348.2
CDS CAA 72 bp AGTAGCACGCAGCGGCGTCTCCTACTGTTGAACTTGTaGGGATCTAGGATGTCCAACACGGAGAAGGAGGTG +
Preference number: 6 (lower is better)
Translates to: SSTQRRLLLLNL*GSRMSNTEKEV
Trigger: CACCTCCTTCTCCGTGTTGGACATCCTAGATCCCAACAAGTTCAACAGTAGGAGACGCCGCTGCGTGCTACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173348.2