RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NKD2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021567

Ensembl transcript IDs: ENSMUST00000022051.14, ENSMUST00000118096.2

Found 225 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGTGCCATCTCCCTGGTGTGCCCCCTTGACATCTGCAGCTGGTGTTaGGCCAGGGGATGCTGTATTCTCTACTGGGCACATGCCAGCCCC +
Preference number: 1 (lower is better)
Translates to: GAISLVCPLDICSWC*ARGCCILYWAHASP
Trigger: GGGGCTGGCATGTGCCCAGTAGAGAATACAGCATCCCCTGGCTCAACACCAGCTGCAGATGTCAAGGGGGCACACCAGGGAGATGGCACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR GCA 90 bp CAGCTGGTGTTGAGCCAGGGGATGCTGTATTCTCTACTGGGCACATaGCAGCCCCTGCTCTGTTCCCAAGGGCATTTGGGCAGAGTGCTT +
Preference number: 1 (lower is better)
Translates to: QLVLSQGMLYSLLGT*QPLLCSQGHLGRVL
Trigger: AAGCACTCTGCCCAAATGCCCTTGGGAACAGAGCAGGGGCTGGCATGTGCCCAGTAGAGAATACAGCATCCCCTGGCTCAACACCAGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR TCA 90 bp GGAGTTACAGACAGTTGTGAACTGCCATGTGGGGGTGCTGGGAATTaGGCCCAGGACCTCTGGAAGAGCAGCCTCTTAACTGCTGAGCCA +
Preference number: 1 (lower is better)
Translates to: GVTDSCELPCGGAGN*AQDLWKSSLLTAEP
Trigger: TGGCTCAGCAGTTAAGAGGCTGCTCTTCCAGAGGTCCTGGGCTCAATTCCCAGCACCCCCACATGGCAGTTCACAACTGTCTGTAACTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR TCA 90 bp TCCATGAATATCCAAGCCTGGTGCCATCTCCCTGGTGTGCCCCCTTaGCATCTGCAGCTGGTGTTGAGCCAGGGGATGCTGTATTCTCTA +
Preference number: 1 (lower is better)
Translates to: SMNIQAWCHLPGVPP*HLQLVLSQGMLYSL
Trigger: TAGAGAATACAGCATCCCCTGGCTCAACACCAGCTGCAGATGTCAAGGGGGCACACCAGGGAGATGGCACCAGGCTTGGATATTCATGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR GCA 90 bp CTTCTCATCCCAACCCGTCTGGGTCTTATCCATATCTACCTAGGATaGTGGAAGCTCGACACCAAGCCTCATGCTGCCCACGGAACGTCA +
Preference number: 1 (lower is better)
Translates to: LLIPTRLGLIHIYLG*WKLDTKPHAAHGTS
Trigger: TGACGTTCCGTGGGCAGCATGAGGCTTGGTGTCGAGCTTCCAGCATCCTAGGTAGATATGGATAAGACCCAGACGGGTTGGGATGAGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR CCA 90 bp AAAGGTAGCTTTGTCCATGAATATCCAAGCCTGGTGCCATCTCCCTaGTGTGCCCCCTTGACATCTGCAGCTGGTGTTGAGCCAGGGGAT +
Preference number: 1 (lower is better)
Translates to: KGSFVHEYPSLVPSP*CAPLTSAAGVEPGD
Trigger: ATCCCCTGGCTCAACACCAGCTGCAGATGTCAAGGGGGCACACCAGGGAGATGGCACCAGGCTTGGATATTCATGGACAAAGCTACCTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR CCA 90 bp GTCGTCTGTTGCCAGGTACTACCAACTGCCACAGAGACACCATCCTaGCACCCAGCACAGGGTGGACTAAGCATCACCACCTCTATCTTT +
Preference number: 1 (lower is better)
Translates to: VVCCQVLPTATETPS*HPAQGGLSITTSIF
Trigger: AAAGATAGAGGTGGTGATGCTTAGTCCACCCTGTGCTGGGTGCCAGGATGGTGTCTCTGTGGCAGTTGGTAGTACCTGGCAACAGACGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR GCA 90 bp AGGGTGTTGGAAGCCCTAGAATTGGAGTTACAGACAGTTGTGAACTaGCATGTGGGGGTGCTGGGAATTGAGCCCAGGACCTCTGGAAGA +
Preference number: 1 (lower is better)
Translates to: RVLEALELELQTVVN*HVGVLGIEPRTSGR
Trigger: TCTTCCAGAGGTCCTGGGCTCAATTCCCAGCACCCCCACATGGCAGTTCACAACTGTCTGTAACTCCAATTCTAGGGCTTCCAACACCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR CCA 90 bp CTGAGAGAGAAACTGGGTGGCCATGCTGATTCAATCCCTCTGCTGTaGTGTGGGTGGTGGAACCTCACATACATGCCATCTCTACATCCA +
Preference number: 1 (lower is better)
Translates to: LREKLGGHADSIPLL*CGWWNLTYMPSLHP
Trigger: TGGATGTAGAGATGGCATGTATGTGAGGTTCCACCACCCACACCACAGCAGAGGGATTGAATCAGCATGGCCACCCAGTTTCTCTCTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR GCA 90 bp AGGGGAAAGGAGATAAACATAAGGTTGTGTCGCTTCTCAACAGTCTaGATAAGCTGGAGCCCACGGAGTCCATCTGGAGCTTGGTGTTTC +
Preference number: 1 (lower is better)
Translates to: RGKEINIRLCRFSTV*ISWSPRSPSGAWCF
Trigger: GAAACACCAAGCTCCAGATGGACTCCGTGGGCTCCAGCTTATGCAGACTGTTGAGAAGCGACACAACCTTATGTTTATCTCCTTTCCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR TCA 90 bp AATATAAGAGTGCTGCATACTGAGAGAGAAACTGGGTGGCCATGCTaGTTCAATCCCTCTGCTGTGGTGTGGGTGGTGGAACCTCACATA +
Preference number: 1 (lower is better)
Translates to: NIRVLHTERETGWPC*FNPSAVVWVVEPHI
Trigger: TATGTGAGGTTCCACCACCCACACCACAGCAGAGGGATTGAATCAGCATGGCCACCCAGTTTCTCTCTCAGTATGCAGCACTCTTATATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR GCA 90 bp GCTTTCTGGATGACACAGGAGCACGTGTCCCTGGTAACCATCAGCTaGATCAAATGTACTGGTATCCAAATGGCATGGAGAAAGGTAGCT +
Preference number: 1 (lower is better)
Translates to: AFWMTQEHVSLVTIS*IKCTGIQMAWRKVA
Trigger: AGCTACCTTTCTCCATGCCATTTGGATACCAGTACATTTGATGCAGCTGATGGTTACCAGGGACACGTGCTCCTGTGTCATCCAGAAAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR TCA 90 bp CTCTTGTTCTGTCCTGCTGGTGGAACCATGAAAATTGTGGCTTCTTaGGGACCCCATACCTTTGCAGCCTTTATGGAGGGACATCTAAGT +
Preference number: 1 (lower is better)
Translates to: LLFCPAGGTMKIVAS*GPHTFAAFMEGHLS
Trigger: ACTTAGATGTCCCTCCATAAAGGCTGCAAAGGTATGGGGTCCTCAAGAAGCCACAATTTTCATGGTTCCACCAGCAGGACAGAACAAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR CCA 90 bp CTTGATGTAGCCTCCCACAAGCTCTCACTGCCACACCCAACTAAATaGTCTGGGTGTTTCTCATTTACTTCACAAGTGCTTTCCCATCTC +
Preference number: 1 (lower is better)
Translates to: LDVASHKLSLPHPTK*SGCFSFTSQVLSHL
Trigger: GAGATGGGAAAGCACTTGTGAAGTAAATGAGAAACACCCAGACCATTTAGTTGGGTGTGGCAGTGAGAGCTTGTGGGAGGCTACATCAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR GCA 90 bp ACCATGAGGATACAAAGGATGCCTTCAAATATCCCATGGTCACACTaGAGCAAAAGCAGGAACAGATGCTTTTGTGCCCTCATGTATGGG +
Preference number: 1 (lower is better)
Translates to: TMRIQRMPSNIPWSH*SKSRNRCFCALMYG
Trigger: CCCATACATGAGGGCACAAAAGCATCTGTTCCTGCTTTTGCTGCAGTGTGACCATGGGATATTTGAAGGCATCCTTTGTATCCTCATGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR CCA 90 bp ACAGGAGCACGTGTCCCTGGTAACCATCAGCTGCATCAAATGTACTaGTATCCAAATGGCATGGAGAAAGGTAGCTTTGTCCATGAATAT +
Preference number: 1 (lower is better)
Translates to: TGARVPGNHQLHQMY*YPNGMEKGSFVHEY
Trigger: ATATTCATGGACAAAGCTACCTTTCTCCATGCCATTTGGATACCAGTACATTTGATGCAGCTGATGGTTACCAGGGACACGTGCTCCTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR TCA 90 bp AAGAGGTTAAAAAGTTCCTCTTGTTCTGTCCTGCTGGTGGAACCATaGAAATTGTGGCTTCTTGAGGACCCCATACCTTTGCAGCCTTTA +
Preference number: 1 (lower is better)
Translates to: KRLKSSSCSVLLVEP*KLWLLEDPIPLQPL
Trigger: TAAAGGCTGCAAAGGTATGGGGTCCTCAAGAAGCCACAATTTTCATGGTTCCACCAGCAGGACAGAACAAGAGGAACTTTTTAACCTCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR TCA 90 bp AAAGCATTGCCTTTTCTATTCAGGTACCCGAAGGTCAAAGAACCATaGGGATACAAAGGATGCCTTCAAATATCCCATGGTCACACTGCA +
Preference number: 1 (lower is better)
Translates to: KALPFLFRYPKVKEP*GYKGCLQISHGHTA
Trigger: TGCAGTGTGACCATGGGATATTTGAAGGCATCCTTTGTATCCTCATGGTTCTTTGACCTTCGGGTACCTGAATAGAAAAGGCAATGCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR GCA 90 bp ACAAGGGTATGTGTGCCTTGTTACAGAATGCACAATTCTTTATTATaGCAAGAAGGCATCATGCCCAACTTTCATAAACTCACAAGAGGT +
Preference number: 1 (lower is better)
Translates to: TRVCVPCYRMHNSLL*QEGIMPNFHKLTRG
Trigger: ACCTCTTGTGAGTTTATGAAAGTTGGGCATGATGCCTTCTTGGCATAATAAAGAATTGTGCATTCTGTAACAAGGCACACATACCCTTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR-3UTR TCA 90 bp CCTCACCACAGCCACTGTCGTCTGTTGCCAGGTACTACCAACTGCCACAGAGACGGGCTCAGGCTTGGCTaGATCTCCCCACTTCCCATG +
Preference number: 2 (lower is better)
Translates to: PHHSHCRLLPGTTNCHRDGLRLG*ISPLPM
Trigger: CATGGGAAGTGGGGAGATTCAGCCAAGCCTGAGCCC...GTCTCTGTGGCAGTTGGTAGTACCTGGCAACAGACGACAGTGGCTGTGGTGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR-3UTR GCA 90 bp AGGTACTACCAACTGCCACAGAGACACCATCCTGGCACCCAGCACAGGGTGGACTCTCTACTGGGCACATaGCAGCCCCTGCTCTGTTCC +
Preference number: 2 (lower is better)
Translates to: RYYQLPQRHHPGTQHRVDSLLGT*QPLLCS
Trigger: GGAACAGAGCAGGGGCTGGCATGTGCCCAGTAGAGA...GTCCACCCTGTGCTGGGTGCCAGGATGGTGTCTCTGTGGCAGTTGGTAGTACCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR-3UTR CCA 90 bp TCCCCACTTCCCATGCTGCTGCAGCTGGACCATGGCCCTAGGTGTCATTGGGGATGCTGTATTCTCTACTaGGCACATGCCAGCCCCTGC +
Preference number: 2 (lower is better)
Translates to: SPLPMLLQLDHGPRCHWGCCILY*AHASPC
Trigger: GCAGGGGCTGGCATGTGCCCAGTAGAGAATACAGCA...TCCCCAATGACACCTAGGGCCATGGTCCAGCTGCAGCAGCATGGGAAGTGGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR-3UTR TCA 90 bp ACGGAACGTCACTCTGTCCCTCTGCTCAACAGTGCCCCCTCCACATTTGCTGATCCTGGTGTGCCCCCTTaGCATCTGCAGCTGGTGTTG +
Preference number: 2 (lower is better)
Translates to: TERHSVPLLNSAPSTFADPGVPP*HLQLVL
Trigger: CAACACCAGCTGCAGATGTCAAGGGGGCACACCAGG...ATCAGCAAATGTGGAGGGGGCACTGTTGAGCAGAGGGACAGAGTGACGTTCCGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR-3UTR GCA 90 bp ATCTACCTAGGATGCTGGAAGCTCGACACCAAGCCTCATGCTGCCCACGGAACGTCTCTACTGGGCACATaGCAGCCCCTGCTCTGTTCC +
Preference number: 2 (lower is better)
Translates to: IYLGCWKLDTKPHAAHGTSLLGT*QPLLCS
Trigger: GGAACAGAGCAGGGGCTGGCATGTGCCCAGTAGAGA...CGTTCCGTGGGCAGCATGAGGCTTGGTGTCGAGCTTCCAGCATCCTAGGTAGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR-3UTR CCA 90 bp CCTCACCACAGCCACTGTCGTCTGTTGCCAGGTACTACCAACTGCCACAGAGACTTAACACTCACACAGTaGCAGGTGCTCGGCCCCTGC +
Preference number: 2 (lower is better)
Translates to: PHHSHCRLLPGTTNCHRDLTLTQ*QVLGPC
Trigger: GCAGGGGCCGAGCACCTGCCACTGTGTGAGTGTTAA...GTCTCTGTGGCAGTTGGTAGTACCTGGCAACAGACGACAGTGGCTGTGGTGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR-3UTR TCA 90 bp CTTCACCTGCAGCTACGGTGTGTCAGTACACTACCCACCGCTCTCAGAAAAGTGCCTGGTGTGCCCCCTTaGCATCTGCAGCTGGTGTTG +
Preference number: 2 (lower is better)
Translates to: LHLQLRCVSTLPTALRKVPGVPP*HLQLVL
Trigger: CAACACCAGCTGCAGATGTCAAGGGGGCACACCAGG...CACTTTTCTGAGAGCGGTGGGTAGTGTACTGACACACCGTAGCTGCAGGTGAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR CAA 90 bp GTCCATGAATATCCAAGCCTGGTGCCATCTCCCTGGTGTGCCCCCTaGACATCTGCAGCTGGTGTTGAGCCAGGGGATGCTGTATTCTCT +
Preference number: 2 (lower is better)
Translates to: VHEYPSLVPSPWCAP*TSAAGVEPGDAVFS
Trigger: AGAGAATACAGCATCCCCTGGCTCAACACCAGCTGCAGATGTCAAGGGGGCACACCAGGGAGATGGCACCAGGCTTGGATATTCATGGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR-3UTR TCA 90 bp CCACTGTCGTCTGTTGCCAGGTACTACCAACTGCCACAGAGACACCATCCTGGCTGGCTATGCACAGCCTaGATGAGGACCTCCAGCATT +
Preference number: 2 (lower is better)
Translates to: PLSSVARYYQLPQRHHPGWLCTA*MRTSSI
Trigger: AATGCTGGAGGTCCTCATTCAGGCTGTGCATAGCCA...GCCAGGATGGTGTCTCTGTGGCAGTTGGTAGTACCTGGCAACAGACGACAGTGG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR-3UTR GCA 90 bp AGGTTGGTTATTTTCCTCACCACAGCCACTGTCGTCTGTTGCCAGGTACTACCAGCACATGCCAGCCCCTaGTCTGTTCCCAAGGGCATT +
Preference number: 2 (lower is better)
Translates to: RLVIFLTTATVVCCQVLPAHASP*SVPKGI
Trigger: AATGCCCTTGGGAACAGAGCAGGGGCTGGCATGTGC...TGGTAGTACCTGGCAACAGACGACAGTGGCTGTGGTGAGGAAAATAACCAACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR-3UTR CCA 90 bp CCCTCATGTATGGGCTTTCTGGATGACACAGGAGCACGTGTCCCTGGTAACCATGTTCCCAAGGGCATTTaGGCAGAGTGCTTGTTTGGG +
Preference number: 2 (lower is better)
Translates to: PSCMGFLDDTGARVPGNHVPKGI*AECLFG
Trigger: CCCAAACAAGCACTCTGCCCAAATGCCCTTGGGAAC...ATGGTTACCAGGGACACGTGCTCCTGTGTCATCCAGAAAGCCCATACATGAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR-3UTR GCA 90 bp CCACTGTCGTCTGTTGCCAGGTACTACCAACTGCCACAGAGACACCATCCTGGCGGAACCTCACATACATaGCATCTCTACATCCATGAC +
Preference number: 2 (lower is better)
Translates to: PLSSVARYYQLPQRHHPGGTSHT*HLYIHD
Trigger: GTCATGGATGTAGAGATGGCATGTATGTGAGGTTCC...GCCAGGATGGTGTCTCTGTGGCAGTTGGTAGTACCTGGCAACAGACGACAGTGG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR-3UTR CCA 90 bp ATCTACCTAGGATGCTGGAAGCTCGACACCAAGCCTCATGCTGCCCACGGAACGGGTATCCAAATGGCATaGAGAAAGGTAGCTTTGTCC +
Preference number: 2 (lower is better)
Translates to: IYLGCWKLDTKPHAAHGTGIQMA*RKVALS
Trigger: GGACAAAGCTACCTTTCTCCATGCCATTTGGATACC...CGTTCCGTGGGCAGCATGAGGCTTGGTGTCGAGCTTCCAGCATCCTAGGTAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR-3UTR TCA 90 bp ACAACCTCCACATACACAGCCAAGGTTGGTTATTTTCCTCACCACAGCCACTGTCAGCCTCTTAACTGCTaGGCCATCTCTTCAGCCTCC +
Preference number: 2 (lower is better)
Translates to: TTSTYTAKVGYFPHHSHCQPLNC*AISSAS
Trigger: GGAGGCTGAAGAGATGGCTCAGCAGTTAAGAGGCTG...ACAGTGGCTGTGGTGAGGAAAATAACCAACCTTGGCTGTGTATGTGGAGGTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR-3UTR CCA 90 bp CCTCACCACAGCCACTGTCGTCTGTTGCCAGGTACTACCAACTGCCACAGAGACCCACACCCAACTAAATaGTCTGGGTGTTTCTCATTT +
Preference number: 2 (lower is better)
Translates to: PHHSHCRLLPGTTNCHRDPHPTK*SGCFSF
Trigger: AAATGAGAAACACCCAGACCATTTAGTTGGGTGTGG...GTCTCTGTGGCAGTTGGTAGTACCTGGCAACAGACGACAGTGGCTGTGGTGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR CAA 90 bp CTTAGAATAGGCACGGGGTTGAGGGGAAAGGAGATAAACATAAGGTaGTGTCGCTTCTCAACAGTCTGCATAAGCTGGAGCCCACGGAGT +
Preference number: 2 (lower is better)
Translates to: LRIGTGLRGKEINIR*CRFSTVCISWSPRS
Trigger: ACTCCGTGGGCTCCAGCTTATGCAGACTGTTGAGAAGCGACACAACCTTATGTTTATCTCCTTTCCCCTCAACCCCGTGCCTATTCTAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR-3UTR TCA 90 bp GGGGTTGAGGGGAAAGGAGATAAACATAAGGTTGTGTCGCTTCTCAACAGTCTGCTCCAGCATTGTACCTaGTCCTTCTCATCCCAACCC +
Preference number: 2 (lower is better)
Translates to: GVEGKGDKHKVVSLLNSLLQHCT*SFSSQP
Trigger: GGGTTGGGATGAGAAGGATCAGGTACAATGCTGGAG...CAGACTGTTGAGAAGCGACACAACCTTATGTTTATCTCCTTTCCCCTCAACCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR-3UTR TCA 90 bp TCATCTTCACCTGCAGCTACGGTGTGTCAGTACACTACCCACCGCTCTCAGAAACTGCTGGTGGAACCATaGAAATTGTGGCTTCTTGAG +
Preference number: 2 (lower is better)
Translates to: SSSPAATVCQYTTHRSQKLLVEP*KLWLLE
Trigger: CTCAAGAAGCCACAATTTTCATGGTTCCACCAGCAG...TTTCTGAGAGCGGTGGGTAGTGTACTGACACACCGTAGCTGCAGGTGAAGATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR-3UTR CCA 90 bp AGGTACTACCAACTGCCACAGAGACACCATCCTGGCACCCAGCACAGGGTGGACCATTTGCTGATAATCTaGCCTCTTTGTTTTGCTTTG +
Preference number: 2 (lower is better)
Translates to: RYYQLPQRHHPGTQHRVDHLLII*PLCFAL
Trigger: CAAAGCAAAACAAAGAGGCCAGATTATCAGCAAATG...GTCCACCCTGTGCTGGGTGCCAGGATGGTGTCTCTGTGGCAGTTGGTAGTACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR-3UTR CCA 90 bp TCATCTTCACCTGCAGCTACGGTGTGTCAGTACACTACCCACCGCTCTCAGAAAGTTCTGTCCTGCTGGTaGAACCATGAAAATTGTGGC +
Preference number: 2 (lower is better)
Translates to: SSSPAATVCQYTTHRSQKVLSCW*NHENCG
Trigger: GCCACAATTTTCATGGTTCCACCAGCAGGACAGAAC...TTTCTGAGAGCGGTGGGTAGTGTACTGACACACCGTAGCTGCAGGTGAAGATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR CAA 90 bp TGCATCAAATGTACTGGTATCCAAATGGCATGGAGAAAGGTAGCTTaGTCCATGAATATCCAAGCCTGGTGCCATCTCCCTGGTGTGCCC +
Preference number: 2 (lower is better)
Translates to: CIKCTGIQMAWRKVA*SMNIQAWCHLPGVP
Trigger: GGGCACACCAGGGAGATGGCACCAGGCTTGGATATTCATGGACAAAGCTACCTTTCTCCATGCCATTTGGATACCAGTACATTTGATGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR CAA 90 bp AAATATCCCATGGTCACACTGCAGCAAAAGCAGGAACAGATGCTTTaGTGCCCTCATGTATGGGCTTTCTGGATGACACAGGAGCACGTG +
Preference number: 2 (lower is better)
Translates to: KYPMVTLQQKQEQML*CPHVWAFWMTQEHV
Trigger: CACGTGCTCCTGTGTCATCCAGAAAGCCCATACATGAGGGCACAAAAGCATCTGTTCCTGCTTTTGCTGCAGTGTGACCATGGGATATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR CAA 90 bp CCTCTTGTTCTGTCCTGCTGGTGGAACCATGAAAATTGTGGCTTCTaGAGGACCCCATACCTTTGCAGCCTTTATGGAGGGACATCTAAG +
Preference number: 2 (lower is better)
Translates to: PLVLSCWWNHENCGF*RTPYLCSLYGGTSK
Trigger: CTTAGATGTCCCTCCATAAAGGCTGCAAAGGTATGGGGTCCTCAAGAAGCCACAATTTTCATGGTTCCACCAGCAGGACAGAACAAGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR-3UTR TCA 90 bp ATCTACCTAGGATGCTGGAAGCTCGACACCAAGCCTCATGCTGCCCACGGAACGTTTAACATGGTACACTaGAGAAGAACCACTTTCCAA +
Preference number: 2 (lower is better)
Translates to: IYLGCWKLDTKPHAAHGTFNMVH*RRTTFQ
Trigger: TTGGAAAGTGGTTCTTCTTCAGTGTACCATGTTAAA...CGTTCCGTGGGCAGCATGAGGCTTGGTGTCGAGCTTCCAGCATCCTAGGTAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR-3UTR GCA 90 bp GGGAAAGGAGATAAACATAAGGTTGTGTCGCTTCTCAACAGTCTGCATAAGCTGAATATCCAAGCCTGGTaGCATCTCCCTGGTGTGCCC +
Preference number: 2 (lower is better)
Translates to: GKGDKHKVVSLLNSLHKLNIQAW*HLPGVP
Trigger: GGGCACACCAGGGAGATGGCACCAGGCTTGGATATT...CAGCTTATGCAGACTGTTGAGAAGCGACACAACCTTATGTTTATCTCCTTTCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR-3UTR CCA 90 bp TATCCAAATGGCATGGAGAAAGGTAGCTTTGTCCATGAATATCCAAGCCTGGTGTGCTGTATTCTCTACTaGGCACATGCCAGCCCCTGC +
Preference number: 2 (lower is better)
Translates to: YPNGMEKGSFVHEYPSLVCCILY*AHASPC
Trigger: GCAGGGGCTGGCATGTGCCCAGTAGAGAATACAGCA...CACCAGGCTTGGATATTCATGGACAAAGCTACCTTTCTCCATGCCATTTGGATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR CAA 90 bp CGGAACGTCACTCTGTCCCTCTGCTCAACAGTGCCCCCTCCACATTaGCTGATAATCTGGCCTCTTTGTTTTGCTTTGTTTAACATGGTA +
Preference number: 2 (lower is better)
Translates to: RNVTLSLCSTVPPPH*LIIWPLCFALFNMV
Trigger: TACCATGTTAAACAAAGCAAAACAAAGAGGCCAGATTATCAGCAAATGTGGAGGGGGCACTGTTGAGCAGAGGGACAGAGTGACGTTCCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR CAA 90 bp TTTATCTACATGTATGTCTGTGTGAGGGTGTTGGAAGCCCTAGAATaGGAGTTACAGACAGTTGTGAACTGCCATGTGGGGGTGCTGGGA +
Preference number: 2 (lower is better)
Translates to: FIYMYVCVRVLEALE*ELQTVVNCHVGVLG
Trigger: TCCCAGCACCCCCACATGGCAGTTCACAACTGTCTGTAACTCCAATTCTAGGGCTTCCAACACCCTCACACAGACATACATGTAGATAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR-3UTR TCA 90 bp GGTGTGTCAGTACACTACCCACCGCTCTCAGAAAAGTGTTTTAATACAAGGGTAATCTGCAGCTGGTGTTaGGCCAGGGGATGCTGTATT +
Preference number: 2 (lower is better)
Translates to: GVSVHYPPLSEKCFNTRVICSWC*ARGCCI
Trigger: AATACAGCATCCCCTGGCTCAACACCAGCTGCAGAT...TACCCTTGTATTAAAACACTTTTCTGAGAGCGGTGGGTAGTGTACTGACACACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR-3UTR GCA 90 bp GTTCCTCTTGTTCTGTCCTGCTGGTGGAACCATGAAAATTGTGGCTTCTTGAGGATCCCATGGTCACACTaGAGCAAAAGCAGGAACAGA +
Preference number: 2 (lower is better)
Translates to: VPLVLSCWWNHENCGFLRIPWSH*SKSRNR
Trigger: TCTGTTCCTGCTTTTGCTGCAGTGTGACCATGGGAT...CCTCAAGAAGCCACAATTTTCATGGTTCCACCAGCAGGACAGAACAAGAGGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR-3UTR GCA 90 bp CTCTGCTCAACAGTGCCCCCTCCACATTTGCTGATAATCTGGCCTCTTTGTTTTATCCCATGGTCACACTaGAGCAAAAGCAGGAACAGA +
Preference number: 2 (lower is better)
Translates to: LCSTVPPPHLLIIWPLCFIPWSH*SKSRNR
Trigger: TCTGTTCCTGCTTTTGCTGCAGTGTGACCATGGGAT...AAAACAAAGAGGCCAGATTATCAGCAAATGTGGAGGGGGCACTGTTGAGCAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR-3UTR TCA 90 bp TCAAAGAACCATGAGGATACAAAGGATGCCTTCAAATATCCCATGGTCACACTGATCTGCAGCTGGTGTTaGGCCAGGGGATGCTGTATT +
Preference number: 2 (lower is better)
Translates to: SKNHEDTKDAFKYPMVTLICSWC*ARGCCI
Trigger: AATACAGCATCCCCTGGCTCAACACCAGCTGCAGAT...CAGTGTGACCATGGGATATTTGAAGGCATCCTTTGTATCCTCATGGTTCTTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR-3UTR GCA 90 bp TGCTGCATACTGAGAGAGAAACTGGGTGGCCATGCTGATTCAATCCCTCTGCTGATACAAGGGTATGTGTaGCTTGTTACAGAATGCACA +
Preference number: 2 (lower is better)
Translates to: CCILREKLGGHADSIPLLIQGYV*LVTECT
Trigger: TGTGCATTCTGTAACAAGGCACACATACCCTTGTAT...CAGCAGAGGGATTGAATCAGCATGGCCACCCAGTTTCTCTCTCAGTATGCAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR-3UTR CCA 90 bp GGACCCCATACCTTTGCAGCCTTTATGGAGGGACATCTAAGTATCACTTGGCTAGGTATCCAAATGGCATaGAGAAAGGTAGCTTTGTCC +
Preference number: 2 (lower is better)
Translates to: GPHTFAAFMEGHLSITWLGIQMA*RKVALS
Trigger: GGACAAAGCTACCTTTCTCCATGCCATTTGGATACC...TAGCCAAGTGATACTTAGATGTCCCTCCATAAAGGCTGCAAAGGTATGGGGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR-3UTR CCA 90 bp GGTGTGTCAGTACACTACCCACCGCTCTCAGAAAAGTGTTTTAATACAAGGGTACATGTATGGGCTTTCTaGATGACACAGGAGCACGTG +
Preference number: 2 (lower is better)
Translates to: GVSVHYPPLSEKCFNTRVHVWAF*MTQEHV
Trigger: CACGTGCTCCTGTGTCATCCAGAAAGCCCATACATG...TACCCTTGTATTAAAACACTTTTCTGAGAGCGGTGGGTAGTGTACTGACACACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR CAA 90 bp ACATCACATTCAGGTCTTCGGGAATTCCTTAGAATAGGCACGGGGTaGAGGGGAAAGGAGATAAACATAAGGTTGTGTCGCTTCTCAACA +
Preference number: 2 (lower is better)
Translates to: TSHSGLREFLRIGTG*RGKEINIRLCRFST
Trigger: TGTTGAGAAGCGACACAACCTTATGTTTATCTCCTTTCCCCTCAACCCCGTGCCTATTCTAAGGAATTCCCGAAGACCTGAATGTGATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR-3UTR GCA 90 bp TCTCAGAAAAGTGTTTTAATACAAGGGTATGTGTGCCTTGTTACAGAATGCACAGCACATGCCAGCCCCTaGTCTGTTCCCAAGGGCATT +
Preference number: 2 (lower is better)
Translates to: SQKSVLIQGYVCLVTECTAHASP*SVPKGI
Trigger: AATGCCCTTGGGAACAGAGCAGGGGCTGGCATGTGC...TGTGCATTCTGTAACAAGGCACACATACCCTTGTATTAAAACACTTTTCTGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR-3UTR GCA 90 bp CTTCACCTGCAGCTACGGTGTGTCAGTACACTACCCACCGCTCTCAGAAAAGTGTGCCTTGTTACAGAATaGACAATTCTTTATTATGCC +
Preference number: 2 (lower is better)
Translates to: LHLQLRCVSTLPTALRKVCLVTE*TILYYA
Trigger: GGCATAATAAAGAATTGTGCATTCTGTAACAAGGCA...CACTTTTCTGAGAGCGGTGGGTAGTGTACTGACACACCGTAGCTGCAGGTGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR-3UTR CCA 90 bp GTTCCTCTTGTTCTGTCCTGCTGGTGGAACCATGAAAATTGTGGCTTCTTGAGGCTGCATCAAATGTACTaGTATCCAAATGGCATGGAG +
Preference number: 2 (lower is better)
Translates to: VPLVLSCWWNHENCGFLRLHQMY*YPNGME
Trigger: CTCCATGCCATTTGGATACCAGTACATTTGATGCAG...CCTCAAGAAGCCACAATTTTCATGGTTCCACCAGCAGGACAGAACAAGAGGAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR-3UTR GCA 90 bp AGGTTGGTTATTTTCCTCACCACAGCCACTGTCGTCTGTTGCCAGGTACTACCACTTCACAAAAAGCATTaGCTTTTCTATTCAGGTACC +
Preference number: 2 (lower is better)
Translates to: RLVIFLTTATVVCCQVLPLHKKH*LFYSGT
Trigger: GGTACCTGAATAGAAAAGGCAATGCTTTTTGTGAAG...TGGTAGTACCTGGCAACAGACGACAGTGGCTGTGGTGAGGAAAATAACCAACCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR-3UTR CCA 90 bp ACCTCACATACATGCCATCTCTACATCCATGACGTGGGTACTTTAGTCATGTTGCCTTCAAATATCCCATaGTCACACTGCAGCAAAAGC +
Preference number: 2 (lower is better)
Translates to: TSHTCHLYIHDVGTLVMLPSNIP*SHCSKS
Trigger: GCTTTTGCTGCAGTGTGACCATGGGATATTTGAAGG...CAACATGACTAAAGTACCCACGTCATGGATGTAGAGATGGCATGTATGTGAGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR-3UTR TCA 90 bp AACTCACAAGAGGTTAAAAAGTTCCTCTTGTTCTGTCCTGCTGGTGGAACCATGAAGGTCAAAGAACCATaGGGATACAAAGGATGCCTT +
Preference number: 2 (lower is better)
Translates to: NSQEVKKFLLFCPAGGTMKVKEP*GYKGCL
Trigger: AAGGCATCCTTTGTATCCTCATGGTTCTTTGACCTT...CATGGTTCCACCAGCAGGACAGAACAAGAGGAACTTTTTAACCTCTTGTGAGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR-3UTR GCA 90 bp GGACCCCATACCTTTGCAGCCTTTATGGAGGGACATCTAAGTATCACTTGGCTACTTCACAAAAAGCATTaGCTTTTCTATTCAGGTACC +
Preference number: 2 (lower is better)
Translates to: GPHTFAAFMEGHLSITWLLHKKH*LFYSGT
Trigger: GGTACCTGAATAGAAAAGGCAATGCTTTTTGTGAAG...TAGCCAAGTGATACTTAGATGTCCCTCCATAAAGGCTGCAAAGGTATGGGGTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR-3UTR CCA 90 bp ACCTCACATACATGCCATCTCTACATCCATGACGTGGGTACTTTAGTCATGTTGCTGCATCAAATGTACTaGTATCCAAATGGCATGGAG +
Preference number: 2 (lower is better)
Translates to: TSHTCHLYIHDVGTLVMLLHQMY*YPNGME
Trigger: CTCCATGCCATTTGGATACCAGTACATTTGATGCAG...CAACATGACTAAAGTACCCACGTCATGGATGTAGAGATGGCATGTATGTGAGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR-3UTR GCA 90 bp GGGAAAGGAGATAAACATAAGGTTGTGTCGCTTCTCAACAGTCTGCATAAGCTGAAAAGCAGGAACAGATaGTTTTGTGCCCTCATGTAT +
Preference number: 2 (lower is better)
Translates to: GKGDKHKVVSLLNSLHKLKSRNR*FCALMY
Trigger: ATACATGAGGGCACAAAAGCATCTGTTCCTGCTTTT...CAGCTTATGCAGACTGTTGAGAAGCGACACAACCTTATGTTTATCTCCTTTCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR CAA 90 bp TATGTTCATTGGTGTTTTATCTACATGTATGTCTGTGTGAGGGTGTaGGAAGCCCTAGAATTGGAGTTACAGACAGTTGTGAACTGCCAT +
Preference number: 2 (lower is better)
Translates to: YVHWCFIYMYVCVRV*EALELELQTVVNCH
Trigger: ATGGCAGTTCACAACTGTCTGTAACTCCAATTCTAGGGCTTCCAACACCCTCACACAGACATACATGTAGATAAAACACCAATGAACATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR-3UTR TCA 90 bp GGTGTGTCAGTACACTACCCACCGCTCTCAGAAAAGTGTTTTAATACAAGGGTATTTAACATGGTACACTaGAGAAGAACCACTTTCCAA +
Preference number: 2 (lower is better)
Translates to: GVSVHYPPLSEKCFNTRVFNMVH*RRTTFQ
Trigger: TTGGAAAGTGGTTCTTCTTCAGTGTACCATGTTAAA...TACCCTTGTATTAAAACACTTTTCTGAGAGCGGTGGGTAGTGTACTGACACACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR GCA 72 bp CAGGGCTCAGGCTTGGCTGAATCTCCCCACTTCCCATaGTGCTGCAGCTGGACCATGGCCCTAGGTGTCATT +
Preference number: 3 (lower is better)
Translates to: QGSGLAESPHFP*CCSWTMALGVI
Trigger: AATGACACCTAGGGCCATGGTCCAGCTGCAGCAGCATGGGAAGTGGGGAGATTCAGCCAAGCCTGAGCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR GCA 72 bp CACAGCCACTGTCGTCTGTTGCCAGGTACTACCAACTaGCACAGAGACACCATCCTGGCACCCAGCACAGGG +
Preference number: 3 (lower is better)
Translates to: HSHCRLLPGTTN*HRDTILAPSTG
Trigger: CCCTGTGCTGGGTGCCAGGATGGTGTCTCTGTGGCAGTTGGTAGTACCTGGCAACAGACGACAGTGGCTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR TCA 72 bp AACACTCACACAGTGGCAGGTGCTCGGCCCCTGCCATaGGCTTGTCAGGGCTTCCACCTGCCCTGCATTTTT +
Preference number: 3 (lower is better)
Translates to: NTHTVAGARPLP*ACQGFHLPCIF
Trigger: AAAAATGCAGGGCAGGTGGAAGCCCTGACAAGCTCATGGCAGGGGCCGAGCACCTGCCACTGTGTGAGTGTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR GCA 72 bp CTACCTAGGATGCTGGAAGCTCGACACCAAGCCTCATaGTGCCCACGGAACGTCACTCTGTCCCTCTGCTCA +
Preference number: 3 (lower is better)
Translates to: LPRMLEARHQAS*CPRNVTLSLCS
Trigger: TGAGCAGAGGGACAGAGTGACGTTCCGTGGGCAGCATGAGGCTTGGTGTCGAGCTTCCAGCATCCTAGGTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR GCA 72 bp TCAGGCTTGGCTGAATCTCCCCACTTCCCATGCTGCTaGAGCTGGACCATGGCCCTAGGTGTCATTGGGGAT +
Preference number: 3 (lower is better)
Translates to: SGLAESPHFPCC*SWTMALGVIGD
Trigger: ATCCCCAATGACACCTAGGGCCATGGTCCAGCTGCAGCAGCATGGGAAGTGGGGAGATTCAGCCAAGCCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR CCA 72 bp TGCCAGGTACTACCAACTGCCACAGAGACACCATCCTaGCACCCAGCACAGGGTGGACTAAGCATCACCACC +
Preference number: 3 (lower is better)
Translates to: CQVLPTATETPS*HPAQGGLSITT
Trigger: GGTGGTGATGCTTAGTCCACCCTGTGCTGGGTGCCAGGATGGTGTCTCTGTGGCAGTTGGTAGTACCTGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR TCA 72 bp TCCCTGGTGTGCCCCCTTGACATCTGCAGCTGGTGTTaGGCCAGGGGATGCTGTATTCTCTACTGGGCACAT +
Preference number: 3 (lower is better)
Translates to: SLVCPLDICSWC*ARGCCILYWAH
Trigger: ATGTGCCCAGTAGAGAATACAGCATCCCCTGGCTCAACACCAGCTGCAGATGTCAAGGGGGCACACCAGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR GCA 72 bp GGATGCTGTATTCTCTACTGGGCACATGCCAGCCCCTaGTCTGTTCCCAAGGGCATTTGGGCAGAGTGCTTG +
Preference number: 3 (lower is better)
Translates to: GCCILYWAHASP*SVPKGIWAECL
Trigger: CAAGCACTCTGCCCAAATGCCCTTGGGAACAGAGCAGGGGCTGGCATGTGCCCAGTAGAGAATACAGCATCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR TCA 72 bp GACAGTTGTGAACTGCCATGTGGGGGTGCTGGGAATTaGGCCCAGGACCTCTGGAAGAGCAGCCTCTTAACT +
Preference number: 3 (lower is better)
Translates to: DSCELPCGGAGN*AQDLWKSSLLT
Trigger: AGTTAAGAGGCTGCTCTTCCAGAGGTCCTGGGCTCAATTCCCAGCACCCCCACATGGCAGTTCACAACTGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR GCA 72 bp CCAACCCGTCTGGGTCTTATCCATATCTACCTAGGATaGTGGAAGCTCGACACCAAGCCTCATGCTGCCCAC +
Preference number: 3 (lower is better)
Translates to: PTRLGLIHIYLG*WKLDTKPHAAH
Trigger: GTGGGCAGCATGAGGCTTGGTGTCGAGCTTCCAGCATCCTAGGTAGATATGGATAAGACCCAGACGGGTTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR CCA 72 bp ATGCTGCTGCAGCTGGACCATGGCCCTAGGTGTCATTaGGGATATCCTGTAGGACATCTCTCAGGGCCTGAA +
Preference number: 3 (lower is better)
Translates to: MLLQLDHGPRCH*GYPVGHLSGPE
Trigger: TTCAGGCCCTGAGAGATGTCCTACAGGATATCCCCAATGACACCTAGGGCCATGGTCCAGCTGCAGCAGCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR-3UTR CAA 90 bp GTGCTGGAGAACATGAGCAGTTTGGGGACAGGGGAGGCGGTGTCACTAGATAGTGTCTGTGTGAGGGTGTaGGAAGCCCTAGAATTGGAG +
Preference number: 3 (lower is better)
Translates to: VLENMSSLGTGEAVSLDSVCVRV*EALELE
Trigger: CTCCAATTCTAGGGCTTCCAACACCCTCACACAGAC...ACTATCTAGTGACACCGCCTCCCCTGTCCCCAAACTGCTCATGTTCTCCAGCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR GCA 72 bp AGCATTCACCCTCCACAAGTACCTGTCATCTTCACCTaGAGCTACGGTGTGTCAGTACACTACCCACCGCTC +
Preference number: 3 (lower is better)
Translates to: SIHPPQVPVIFT*SYGVSVHYPPL
Trigger: GAGCGGTGGGTAGTGTACTGACACACCGTAGCTGCAGGTGAAGATGACAGGTACTTGTGGAGGGTGAATGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR GCA 72 bp GAGAGAAACTGGGTGGCCATGCTGATTCAATCCCTCTaGTGTGGTGTGGGTGGTGGAACCTCACATACATGC +
Preference number: 3 (lower is better)
Translates to: ERNWVAMLIQSL*CGVGGGTSHTC
Trigger: GCATGTATGTGAGGTTCCACCACCCACACCACAGCAGAGGGATTGAATCAGCATGGCCACCCAGTTTCTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR GCA 72 bp GAAGCCCTAGAATTGGAGTTACAGACAGTTGTGAACTaGCATGTGGGGGTGCTGGGAATTGAGCCCAGGACC +
Preference number: 3 (lower is better)
Translates to: EALELELQTVVN*HVGVLGIEPRT
Trigger: GGTCCTGGGCTCAATTCCCAGCACCCCCACATGGCAGTTCACAACTGTCTGTAACTCCAATTCTAGGGCTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR-3UTR CAA 90 bp TCATCTTCACCTGCAGCTACGGTGTGTCAGTACACTACCCACCGCTCTCAGAAACATCTGCAGCTGGTGTaGAGCCAGGGGATGCTGTAT +
Preference number: 3 (lower is better)
Translates to: SSSPAATVCQYTTHRSQKHLQLV*SQGMLY
Trigger: ATACAGCATCCCCTGGCTCAACACCAGCTGCAGATG...TTTCTGAGAGCGGTGGGTAGTGTACTGACACACCGTAGCTGCAGGTGAAGATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR-3UTR CAA 90 bp GTTCCTCTTGTTCTGTCCTGCTGGTGGAACCATGAAAATTGTGGCTTCTTGAGGCCCTGGTGTGCCCCCTaGACATCTGCAGCTGGTGTT +
Preference number: 3 (lower is better)
Translates to: VPLVLSCWWNHENCGFLRPWCAP*TSAAGV
Trigger: AACACCAGCTGCAGATGTCAAGGGGGCACACCAGGG...CCTCAAGAAGCCACAATTTTCATGGTTCCACCAGCAGGACAGAACAAGAGGAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR TCA 72 bp ATGCACAGCCTGAATGAGGACCTCCAGCATTGTACCTaGTCCTTCTCATCCCAACCCGTCTGGGTCTTATCC +
Preference number: 3 (lower is better)
Translates to: MHSLNEDLQHCT*SFSSQPVWVLS
Trigger: GGATAAGACCCAGACGGGTTGGGATGAGAAGGATCAGGTACAATGCTGGAGGTCCTCATTCAGGCTGTGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR CCA 72 bp AAACTGGGTGGCCATGCTGATTCAATCCCTCTGCTGTaGTGTGGGTGGTGGAACCTCACATACATGCCATCT +
Preference number: 3 (lower is better)
Translates to: KLGGHADSIPLL*CGWWNLTYMPS
Trigger: AGATGGCATGTATGTGAGGTTCCACCACCCACACCACAGCAGAGGGATTGAATCAGCATGGCCACCCAGTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR-3UTR CAA 90 bp ATCTACCTAGGATGCTGGAAGCTCGACACCAAGCCTCATGCTGCCCACGGAACGTGGAGAAAGGTAGCTTaGTCCATGAATATCCAAGCC +
Preference number: 3 (lower is better)
Translates to: IYLGCWKLDTKPHAAHGTWRKVA*SMNIQA
Trigger: GGCTTGGATATTCATGGACAAAGCTACCTTTCTCCA...CGTTCCGTGGGCAGCATGAGGCTTGGTGTCGAGCTTCCAGCATCCTAGGTAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR TCA 72 bp GCATGTCTAGCTAACAGTGAACAGCCTACAGAGGACTaGTGGTCCCCAGGTCAGAGACATCACATTCAGGTC +
Preference number: 3 (lower is better)
Translates to: ACLANSEQPTED*WSPGQRHHIQV
Trigger: GACCTGAATGTGATGTCTCTGACCTGGGGACCATCAGTCCTCTGTAGGCTGTTCACTGTTAGCTAGACATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR GCA 72 bp CTCTGCTGTGGTGTGGGTGGTGGAACCTCACATACATaGCATCTCTACATCCATGACGTGGGTACTTTAGTC +
Preference number: 3 (lower is better)
Translates to: LCCGVGGGTSHT*HLYIHDVGTLV
Trigger: GACTAAAGTACCCACGTCATGGATGTAGAGATGGCATGTATGTGAGGTTCCACCACCCACACCACAGCAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR GCA 72 bp TTGGTTATTTTCCTCACCACAGCCACTGTCGTCTGTTaGCAGGTACTACCAACTGCCACAGAGACACCATCC +
Preference number: 3 (lower is better)
Translates to: LVIFLTTATVVC*QVLPTATETPS
Trigger: GGATGGTGTCTCTGTGGCAGTTGGTAGTACCTGGCAACAGACGACAGTGGCTGTGGTGAGGAAAATAACCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR CCA 72 bp GAACAGATGCTTTTGTGCCCTCATGTATGGGCTTTCTaGATGACACAGGAGCACGTGTCCCTGGTAACCATC +
Preference number: 3 (lower is better)
Translates to: EQMLLCPHVWAF*MTQEHVSLVTI
Trigger: GATGGTTACCAGGGACACGTGCTCCTGTGTCATCCAGAAAGCCCATACATGAGGGCACAAAAGCATCTGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR CCA 72 bp CAAAAGCAGGAACAGATGCTTTTGTGCCCTCATGTATaGGCTTTCTGGATGACACAGGAGCACGTGTCCCTG +
Preference number: 3 (lower is better)
Translates to: QKQEQMLLCPHV*AFWMTQEHVSL
Trigger: CAGGGACACGTGCTCCTGTGTCATCCAGAAAGCCCATACATGAGGGCACAAAAGCATCTGTTCCTGCTTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR CCA 72 bp CACAGTAGCCACAACCTCCACATACACAGCCAAGGTTaGTTATTTTCCTCACCACAGCCACTGTCGTCTGTT +
Preference number: 3 (lower is better)
Translates to: HSSHNLHIHSQG*LFSSPQPLSSV
Trigger: AACAGACGACAGTGGCTGTGGTGAGGAAAATAACCAACCTTGGCTGTGTATGTGGAGGTTGTGGCTACTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR-3UTR CAA 90 bp GGGAAAGGAGATAAACATAAGGTTGTGTCGCTTCTCAACAGTCTGCATAAGCTGCATCTGCAGCTGGTGTaGAGCCAGGGGATGCTGTAT +
Preference number: 3 (lower is better)
Translates to: GKGDKHKVVSLLNSLHKLHLQLV*SQGMLY
Trigger: ATACAGCATCCCCTGGCTCAACACCAGCTGCAGATG...CAGCTTATGCAGACTGTTGAGAAGCGACACAACCTTATGTTTATCTCCTTTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR-3UTR CAA 90 bp CCACTGTCGTCTGTTGCCAGGTACTACCAACTGCCACAGAGACACCATCCTGGCACTTCACAAAAAGCATaGCCTTTTCTATTCAGGTAC +
Preference number: 3 (lower is better)
Translates to: PLSSVARYYQLPQRHHPGTSQKA*PFLFRY
Trigger: GTACCTGAATAGAAAAGGCAATGCTTTTTGTGAAGT...GCCAGGATGGTGTCTCTGTGGCAGTTGGTAGTACCTGGCAACAGACGACAGTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR TCA 72 bp GAGGGACATCTAAGTATCACTTGGCTATGCACAGCCTaGATGAGGACCTCCAGCATTGTACCTGATCCTTCT +
Preference number: 3 (lower is better)
Translates to: EGHLSITWLCTA*MRTSSIVPDPS
Trigger: AGAAGGATCAGGTACAATGCTGGAGGTCCTCATTCAGGCTGTGCATAGCCAAGTGATACTTAGATGTCCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR CCA 72 bp GCCTCCCACAAGCTCTCACTGCCACACCCAACTAAATaGTCTGGGTGTTTCTCATTTACTTCACAAGTGCTT +
Preference number: 3 (lower is better)
Translates to: ASHKLSLPHPTK*SGCFSFTSQVL
Trigger: AAGCACTTGTGAAGTAAATGAGAAACACCCAGACCATTTAGTTGGGTGTGGCAGTGAGAGCTTGTGGGAGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR-3UTR CAA 90 bp TCAAAGAACCATGAGGATACAAAGGATGCCTTCAAATATCCCATGGTCACACTGTGTTCCCAAGGGCATTaGGGCAGAGTGCTTGTTTGG +
Preference number: 3 (lower is better)
Translates to: SKNHEDTKDAFKYPMVTLCSQGH*GRVLVW
Trigger: CCAAACAAGCACTCTGCCCAAATGCCCTTGGGAACA...CAGTGTGACCATGGGATATTTGAAGGCATCCTTTGTATCCTCATGGTTCTTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR TCA 72 bp CTCTTAGCACAAGCCCAATATAAGAGTGCTGCATACTaGGAGAGAAACTGGGTGGCCATGCTGATTCAATCC +
Preference number: 3 (lower is better)
Translates to: LLAQAQYKSAAY*ERNWVAMLIQS
Trigger: GGATTGAATCAGCATGGCCACCCAGTTTCTCTCTCAGTATGCAGCACTCTTATATTGGGCTTGTGCTAAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
3UTR CCA 72 bp CGTGTCCCTGGTAACCATCAGCTGCATCAAATGTACTaGTATCCAAATGGCATGGAGAAAGGTAGCTTTGTC +
Preference number: 3 (lower is better)
Translates to: RVPGNHQLHQMY*YPNGMEKGSFV
Trigger: GACAAAGCTACCTTTCTCCATGCCATTTGGATACCAGTACATTTGATGCAGCTGATGGTTACCAGGGACACG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR TCA 72 bp AAAAGTTCCTCTTGTTCTGTCCTGCTGGTGGAACCATaGAAATTGTGGCTTCTTGAGGACCCCATACCTTTG +
Preference number: 3 (lower is better)
Translates to: KSSSCSVLLVEP*KLWLLEDPIPL
Trigger: CAAAGGTATGGGGTCCTCAAGAAGCCACAATTTTCATGGTTCCACCAGCAGGACAGAACAAGAGGAACTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR GCA 72 bp CATGAAAATTGTGGCTTCTTGAGGACCCCATACCTTTaGAGCCTTTATGGAGGGACATCTAAGTATCACTTG +
Preference number: 3 (lower is better)
Translates to: HENCGFLRTPYL*SLYGGTSKYHL
Trigger: CAAGTGATACTTAGATGTCCCTCCATAAAGGCTGCAAAGGTATGGGGTCCTCAAGAAGCCACAATTTTCATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR GCA 72 bp AAATCCCTTATTAAGAAGCATTGCTATGGAGTTGTGTaGGTCAAGCAGTATAAGCCAGGACGGTTCTACAGC +
Preference number: 3 (lower is better)
Translates to: KSLIKKHCYGVV*VKQYKPGRFYS
Trigger: GCTGTAGAACCGTCCTGGCTTATACTGCTTGACGCACACAACTCCATAGCAATGCTTCTTAATAAGGGATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR TCA 72 bp CCTTTTCTATTCAGGTACCCGAAGGTCAAAGAACCATaGGGATACAAAGGATGCCTTCAAATATCCCATGGT +
Preference number: 3 (lower is better)
Translates to: PFLFRYPKVKEP*GYKGCLQISHG
Trigger: ACCATGGGATATTTGAAGGCATCCTTTGTATCCTCATGGTTCTTTGACCTTCGGGTACCTGAATAGAAAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR TCA 72 bp TCCATCTGGAGCTTGGTGTTTCTTGTTAACATGAGCTaGACTCTGGGTTTAGAGTTCTGGTTTTTCTTAGTC +
Preference number: 3 (lower is better)
Translates to: SIWSLVFLVNMS*TLGLEFWFFLV
Trigger: GACTAAGAAAAACCAGAACTCTAAACCCAGAGTTCAGCTCATGTTAACAAGAAACACCAAGCTCCAGATGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR GCA 72 bp TGTGTGCCTTGTTACAGAATGCACAATTCTTTATTATaGCAAGAAGGCATCATGCCCAACTTTCATAAACTC +
Preference number: 3 (lower is better)
Translates to: CVPCYRMHNSLL*QEGIMPNFHKL
Trigger: GAGTTTATGAAAGTTGGGCATGATGCCTTCTTGGCATAATAAAGAATTGTGCATTCTGTAACAAGGCACACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR GCA 72 bp GAATGCACAATTCTTTATTATGCCAAGAAGGCATCATaGCCAACTTTCATAAACTCACAAGAGGTTAAAAAG +
Preference number: 3 (lower is better)
Translates to: ECTILYYAKKAS*PTFINSQEVKK
Trigger: CTTTTTAACCTCTTGTGAGTTTATGAAAGTTGGGCATGATGCCTTCTTGGCATAATAAAGAATTGTGCATTC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR TCA 90 bp CTCTACTGGGCACATGCCAGCCCCTGCTCTGTTCCCAAGGGCATTTGGGCAGAGGGCTGTGGTGGGGGCTaGGGAAGGTGGTGGCCATCC +
Preference number: 4 (lower is better)
Translates to: LYWAHASPCSVPKGIWAEGCGGG*GRWWPS
Trigger: GGATGGCCACCACCTTCCTCAGCCCCCACCACAGCC...CTCTGCCCAAATGCCCTTGGGAACAGAGCAGGGGCTGGCATGTGCCCAGTAGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR GCA 90 bp GTCCCTCTGCTCAACAGTGCCCCCTCCACATTTGCTGATAATCTGGCCTCTTTGCTTGATCCGGGGCTGTaGAGCCAGGGCCCGGGTGGC +
Preference number: 4 (lower is better)
Translates to: VPLLNSAPSTFADNLASLLDPGL*SQGPGG
Trigger: GCCACCCGGGCCCTGGCTGCACAGCCCCGGATCAAG...CAAAGAGGCCAGATTATCAGCAAATGTGGAGGGGGCACTGTTGAGCAGAGGGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR TCA 90 bp TCCCCACTTCCCATGCTGCTGCAGCTGGACCATGGCCCTAGGTGTCATTGGGGACCCGGTCTTGGCCAGTaGGAGGACATTCCTTCTTGC +
Preference number: 4 (lower is better)
Translates to: SPLPMLLQLDHGPRCHWGPGLGQ*EDIPSC
Trigger: GCAAGAAGGAATGTCCTCTCACTGGCCAAGACCGGG...TCCCCAATGACACCTAGGGCCATGGTCCAGCTGCAGCAGCATGGGAAGTGGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
CDS-3UTR CCA 90 bp CTGTATTCTCTACTGGGCACATGCCAGCCCCTGCTCTGTTCCCAAGGGCATTTGTCTGTGCTGAAGAGCTaGCCCTGGCCCTCATGGCCC +
Preference number: 4 (lower is better)
Translates to: LYSLLGTCQPLLCSQGHLSVLKS*PWPSWP
Trigger: GGGCCATGAGGGCCAGGGCCAGCTCTTCAGCACAGA...CAAATGCCCTTGGGAACAGAGCAGGGGCTGGCATGTGCCCAGTAGAGAATACAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR TCA 90 bp TGTGCCCCCTTGACATCTGCAGCTGGTGTTGAGCCAGGGGATGCTGTATTCTCTTGTGTGGCCCTGCCATaGTGTTCTTGCCTGGCCTGC +
Preference number: 4 (lower is better)
Translates to: CAPLTSAAGVEPGDAVFSCVALP*CSCLAC
Trigger: GCAGGCCAGGCAAGAACATCATGGCAGGGCCACACA...AGAGAATACAGCATCCCCTGGCTCAACACCAGCTGCAGATGTCAAGGGGGCACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR GCA 90 bp ATCTACCTAGGATGCTGGAAGCTCGACACCAAGCCTCATGCTGCCCACGGAACGAGGAACTGCTTCTCCTaGCCCTTGATCCGGGGCTGT +
Preference number: 4 (lower is better)
Translates to: IYLGCWKLDTKPHAAHGTRNCFS*PLIRGC
Trigger: ACAGCCCCGGATCAAGGGGCAGGAGAAGCAGTTCCT...CGTTCCGTGGGCAGCATGAGGCTTGGTGTCGAGCTTCCAGCATCCTAGGTAGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CCA 90 bp ACGGAACGTCACTCTGTCCCTCTGCTCAACAGTGCCCCCTCCACATTTGCTGATGCTGGGGATCAGCATTaGGCTTCCTGCTGTAGGCGG +
Preference number: 4 (lower is better)
Translates to: TERHSVPLLNSAPSTFADAGDQH*ASCCRR
Trigger: CCGCCTACAGCAGGAAGCCCAATGCTGATCCCCAGC...ATCAGCAAATGTGGAGGGGGCACTGTTGAGCAGAGGGACAGAGTGACGTTCCGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CCA 90 bp TCCCCACTTCCCATGCTGCTGCAGCTGGACCATGGCCCTAGGTGTCATTGGGGACCCTTAAGTGGTGAGTaGCCTTCTCTGGCTTTCTGC +
Preference number: 4 (lower is better)
Translates to: SPLPMLLQLDHGPRCHWGPLSGE*PSLAFC
Trigger: GCAGAAAGCCAGAGAAGGCCACTCACCACTTAAGGG...TCCCCAATGACACCTAGGGCCATGGTCCAGCTGCAGCAGCATGGGAAGTGGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
CDS-3UTR TCA 90 bp TCTACTGGGCACATGCCAGCCCCTGCTCTGTTCCCAAGGGCATTTGGGCAGAGTTGGAGGGTTCAGGGCTaGCAGTTAGCTTCACTCGAA +
Preference number: 4 (lower is better)
Translates to: STGHMPAPALFPRAFGQSWRVQG*QLASLE
Trigger: TTCGAGTGAAGCTAACTGTCAGCCCTGAACCCTCCA...ACTCTGCCCAAATGCCCTTGGGAACAGAGCAGGGGCTGGCATGTGCCCAGTAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CCA 90 bp ATCTACCTAGGATGCTGGAAGCTCGACACCAAGCCTCATGCTGCCCACGGAACGCATGATGTTCTTGCCTaGCCTGCTCAGGTGGTGACC +
Preference number: 4 (lower is better)
Translates to: IYLGCWKLDTKPHAAHGTHDVLA*PAQVVT
Trigger: GGTCACCACCTGAGCAGGCCAGGCAAGAACATCATG...CGTTCCGTGGGCAGCATGAGGCTTGGTGTCGAGCTTCCAGCATCCTAGGTAGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CCA 90 bp TGTATTCTCTACTGGGCACATGCCAGCCCCTGCTCTGTTCCCAAGGGCATTTGGGTGAGTGGCCTTCTCTaGCTTTCTGCCGGTACCGCT +
Preference number: 4 (lower is better)
Translates to: CILYWAHASPCSVPKGIWVSGLL*LSAGTA
Trigger: AGCGGTACCGGCAGAAAGCCAGAGAAGGCCACTCAC...CCAAATGCCCTTGGGAACAGAGCAGGGGCTGGCATGTGCCCAGTAGAGAATACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CCA 90 bp ATCTACCTAGGATGCTGGAAGCTCGACACCAAGCCTCATGCTGCCCACGGAACGTCCACCATGGTAGGCTaGCCATGCCCCTTAAGTGGT +
Preference number: 4 (lower is better)
Translates to: IYLGCWKLDTKPHAAHGTSTMVG*PCPLSG
Trigger: ACCACTTAAGGGGCATGGCCAGCCTACCATGGTGGA...CGTTCCGTGGGCAGCATGAGGCTTGGTGTCGAGCTTCCAGCATCCTAGGTAGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CCA 90 bp GGCATGGAGAAAGGTAGCTTTGTCCATGAATATCCAAGCCTGGTGCCATCTCCCCCTCAGGCCCCAGCATaGGAGGCAGGTCCCGTACTA +
Preference number: 4 (lower is better)
Translates to: GMEKGSFVHEYPSLVPSPPQAPA*EAGPVL
Trigger: TAGTACGGGACCTGCCTCCCATGCTGGGGCCTGAGG...GGGAGATGGCACCAGGCTTGGATATTCATGGACAAAGCTACCTTTCTCCATGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR CAA 72 bp GTCCAGAGTGGCTACGTGCTGGAGAACATGAGCAGTTaGGGGACAGGGGAGGCGGTGTCACTAGATAGTCCA +
Preference number: 4 (lower is better)
Translates to: VQSGYVLENMSS*GTGEAVSLDSP
Trigger: TGGACTATCTAGTGACACCGCCTCCCCTGTCCCCAAACTGCTCATGTTCTCCAGCACGTAGCCACTCTGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
CDS-3UTR GCA 90 bp CTGTATTCTCTACTGGGCACATGCCAGCCCCTGCTCTGTTCCCAAGGGCATTTGACCCTCACGGCTTGCTaGCTTCTCCCCATCATCTGT +
Preference number: 4 (lower is better)
Translates to: LYSLLGTCQPLLCSQGHLTLTAC*LLPIIC
Trigger: ACAGATGATGGGGAGAAGGCAGCAAGCCGTGAGGGT...CAAATGCCCTTGGGAACAGAGCAGGGGCTGGCATGTGCCCAGTAGAGAATACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR GCA 90 bp TGTATTCTCTACTGGGCACATGCCAGCCCCTGCTCTGTTCCCAAGGGCATTTGGTCACTCGAAGGGTCTTaGTGCTGCCGGAGGAGTGAT +
Preference number: 4 (lower is better)
Translates to: CILYWAHASPCSVPKGIWSLEGS*CCRRSD
Trigger: ATCACTCCTCCGGCAGCAGCAAGACCCTTCGAGTGA...CCAAATGCCCTTGGGAACAGAGCAGGGGCTGGCATGTGCCCAGTAGAGAATACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR GCA 90 bp GGTGTGTCAGTACACTACCCACCGCTCTCAGAAAAGTGTTTTAATACAAGGGTACTTGATCCGGGGCTGTaGAGCCAGGGCCCGGGTGGC +
Preference number: 4 (lower is better)
Translates to: GVSVHYPPLSEKCFNTRVLDPGL*SQGPGG
Trigger: GCCACCCGGGCCCTGGCTGCACAGCCCCGGATCAAG...TACCCTTGTATTAAAACACTTTTCTGAGAGCGGTGGGTAGTGTACTGACACACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CCA 90 bp CCCTCATGTATGGGCTTTCTGGATGACACAGGAGCACGTGTCCCTGGTAACCATGCTGAGAGCTTTCCCTaGCTTGCCACTGCCTGGTGT +
Preference number: 4 (lower is better)
Translates to: PSCMGFLDDTGARVPGNHAESFP*LATAWC
Trigger: ACACCAGGCAGTGGCAAGCCAGGGAAAGCTCTCAGC...ATGGTTACCAGGGACACGTGCTCCTGTGTCATCCAGAAAGCCCATACATGAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR TCA 90 bp GGCATGGAGAAAGGTAGCTTTGTCCATGAATATCCAAGCCTGGTGCCATCTCCCCCCGGTCTTGGCCAGTaGGAGGACATTCCTTCTTGC +
Preference number: 4 (lower is better)
Translates to: GMEKGSFVHEYPSLVPSPPGLGQ*EDIPSC
Trigger: GCAAGAAGGAATGTCCTCTCACTGGCCAAGACCGGG...GGGAGATGGCACCAGGCTTGGATATTCATGGACAAAGCTACCTTTCTCCATGCC
54% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR TCA 90 bp GGGAAAGGAGATAAACATAAGGTTGTGTCGCTTCTCAACAGTCTGCATAAGCTGGGCTGTGGTGGGGGCTaGGGAAGGTGGTGGCCATCC +
Preference number: 4 (lower is better)
Translates to: GKGDKHKVVSLLNSLHKLGCGGG*GRWWPS
Trigger: GGATGGCCACCACCTTCCTCAGCCCCCACCACAGCC...CAGCTTATGCAGACTGTTGAGAAGCGACACAACCTTATGTTTATCTCCTTTCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CCA 90 bp CTCTGCTCAACAGTGCCCCCTCCACATTTGCTGATAATCTGGCCTCTTTGTTTTCTGAAGAGCTGGCCCTaGCCCTCATGGCCCTCAGAC +
Preference number: 4 (lower is better)
Translates to: LCSTVPPPHLLIIWPLCFLKSWP*PSWPSD
Trigger: GTCTGAGGGCCATGAGGGCCAGGGCCAGCTCTTCAG...AAAACAAAGAGGCCAGATTATCAGCAAATGTGGAGGGGGCACTGTTGAGCAGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CCA 90 bp GTTCCTCTTGTTCTGTCCTGCTGGTGGAACCATGAAAATTGTGGCTTCTTGAGGCTGAAGAGCTGGCCCTaGCCCTCATGGCCCTCAGAC +
Preference number: 4 (lower is better)
Translates to: VPLVLSCWWNHENCGFLRLKSWP*PSWPSD
Trigger: GTCTGAGGGCCATGAGGGCCAGGGCCAGCTCTTCAG...CCTCAAGAAGCCACAATTTTCATGGTTCCACCAGCAGGACAGAACAAGAGGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR TCA 90 bp CTCTACTGGGCACATGCCAGCCCCTGCTCTGTTCCCAAGGGCATTTGGGCAGAGCAAAGTCATACAATGTaGATGTCCATTCTTGGCGGT +
Preference number: 4 (lower is better)
Translates to: LYWAHASPCSVPKGIWAEQSHTM*MSILGG
Trigger: ACCGCCAAGAATGGACATTCACATTGTATGACTTTG...CTCTGCCCAAATGCCCTTGGGAACAGAGCAGGGGCTGGCATGTGCCCAGTAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR TCA 90 bp GTTCCTCTTGTTCTGTCCTGCTGGTGGAACCATGAAAATTGTGGCTTCTTGAGGTGTGTGGCCCTGCCATaGTGTTCTTGCCTGGCCTGC +
Preference number: 4 (lower is better)
Translates to: VPLVLSCWWNHENCGFLRCVALP*CSCLAC
Trigger: GCAGGCCAGGCAAGAACATCATGGCAGGGCCACACA...CCTCAAGAAGCCACAATTTTCATGGTTCCACCAGCAGGACAGAACAAGAGGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR GCA 90 bp AGGTTGGTTATTTTCCTCACCACAGCCACTGTCGTCTGTTGCCAGGTACTACCAGCTCAATCTCTGTTCTaGCACGAGTGGGCTCCCGGT +
Preference number: 4 (lower is better)
Translates to: RLVIFLTTATVVCCQVLPAQSLF*HEWAPG
Trigger: ACCGGGAGCCCACTCGTGGCAGAACAGAGATTGAGC...TGGTAGTACCTGGCAACAGACGACAGTGGCTGTGGTGAGGAAAATAACCAACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
CDS-3UTR CCA 90 bp CTTCGGGAATTCCTTAGAATAGGCACGGGGTTGAGGGGAAAGGAGATAAACATATCTGTGCTGAAGAGCTaGCCCTGGCCCTCATGGCCC +
Preference number: 4 (lower is better)
Translates to: LREFLRIGTGLRGKEINISVLKS*PWPSWP
Trigger: GGGCCATGAGGGCCAGGGCCAGCTCTTCAGCACAGA...TATGTTTATCTCCTTTCCCCTCAACCCCGTGCCTATTCTAAGGAATTCCCGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CCA 90 bp ATGCTTTTGTGCCCTCATGTATGGGCTTTCTGGATGACACAGGAGCACGTGTCCTCCACCATGGTAGGCTaGCCATGCCCCTTAAGTGGT +
Preference number: 4 (lower is better)
Translates to: MLLCPHVWAFWMTQEHVSSTMVG*PCPLSG
Trigger: ACCACTTAAGGGGCATGGCCAGCCTACCATGGTGGA...GGACACGTGCTCCTGTGTCATCCAGAAAGCCCATACATGAGGGCACAAAAGCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR TCA 90 bp GTGCTGGAGAACATGAGCAGTTTGGGGACAGGGGAGGCGGTGTCACTAGATAGTACATGTCCTCTCTGGTaGCTTTCCCACTGTTGTCAA +
Preference number: 4 (lower is better)
Translates to: VLENMSSLGTGEAVSLDSTCPLW*LSHCCQ
Trigger: TTGACAACAGTGGGAAAGTCACCAGAGAGGACATGT...ACTATCTAGTGACACCGCCTCCCCTGTCCCCAAACTGCTCATGTTCTCCAGCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
CDS-3UTR TCA 90 bp CTGTATTCTCTACTGGGCACATGCCAGCCCCTGCTCTGTTCCCAAGGGCATTTGACATGTCCTCTCTGGTaGCTTTCCCACTGTTGTCAA +
Preference number: 4 (lower is better)
Translates to: LYSLLGTCQPLLCSQGHLTCPLW*LSHCCQ
Trigger: TTGACAACAGTGGGAAAGTCACCAGAGAGGACATGT...CAAATGCCCTTGGGAACAGAGCAGGGGCTGGCATGTGCCCAGTAGAGAATACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR TCA 90 bp GTTCCTCTTGTTCTGTCCTGCTGGTGGAACCATGAAAATTGTGGCTTCTTGAGGCTGCTGCCGGAGGAGTaGTTGACAGAGGCATCGACA +
Preference number: 4 (lower is better)
Translates to: VPLVLSCWWNHENCGFLRLLPEE*LTEAST
Trigger: TGTCGATGCCTCTGTCAATCACTCCTCCGGCAGCAG...CCTCAAGAAGCCACAATTTTCATGGTTCCACCAGCAGGACAGAACAAGAGGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR GCA 90 bp AGGTACTACCAACTGCCACAGAGACACCATCCTGGCACCCAGCACAGGGTGGACGCGTCAATGTTCAAGTaGTTCTTGCTAAGTCTCAGT +
Preference number: 4 (lower is better)
Translates to: RYYQLPQRHHPGTQHRVDASMFK*FLLSLS
Trigger: ACTGAGACTTAGCAAGAAGCACTTGAACATTGACGC...GTCCACCCTGTGCTGGGTGCCAGGATGGTGTCTCTGTGGCAGTTGGTAGTACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
CDS-3UTR CCA 90 bp GGACCCCATACCTTTGCAGCCTTTATGGAGGGACATCTAAGTATCACTTGGCTAGCTGAGAGCTTTCCCTaGCTTGCCACTGCCTGGTGT +
Preference number: 4 (lower is better)
Translates to: GPHTFAAFMEGHLSITWLAESFP*LATAWC
Trigger: ACACCAGGCAGTGGCAAGCCAGGGAAAGCTCTCAGC...TAGCCAAGTGATACTTAGATGTCCCTCCATAAAGGCTGCAAAGGTATGGGGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CCA 90 bp ACCTCACATACATGCCATCTCTACATCCATGACGTGGGTACTTTAGTCATGTTGCCTCAGGCCCCAGCATaGGAGGCAGGTCCCGTACTA +
Preference number: 4 (lower is better)
Translates to: TSHTCHLYIHDVGTLVMLPQAPA*EAGPVL
Trigger: TAGTACGGGACCTGCCTCCCATGCTGGGGCCTGAGG...CAACATGACTAAAGTACCCACGTCATGGATGTAGAGATGGCATGTATGTGAGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
CDS-3UTR GCA 90 bp GGACCCCATACCTTTGCAGCCTTTATGGAGGGACATCTAAGTATCACTTGGCTATCACTCGAAGGGTCTTaGTGCTGCCGGAGGAGTGAT +
Preference number: 4 (lower is better)
Translates to: GPHTFAAFMEGHLSITWLSLEGS*CCRRSD
Trigger: ATCACTCCTCCGGCAGCAGCAAGACCCTTCGAGTGA...TAGCCAAGTGATACTTAGATGTCCCTCCATAAAGGCTGCAAAGGTATGGGGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR GCA 90 bp TGTATTCTCTACTGGGCACATGCCAGCCCCTGCTCTGTTCCCAAGGGCATTTGGATGTGTAGTTCTCGATaGCAGCAAGGTCTAGGTAGT +
Preference number: 4 (lower is better)
Translates to: CILYWAHASPCSVPKGIWMCSSR*QQGLGS
Trigger: ACTACCTAGACCTTGCTGGCATCGAGAACTACACAT...CCAAATGCCCTTGGGAACAGAGCAGGGGCTGGCATGTGCCCAGTAGAGAATACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CCA 90 bp GGACCCCATACCTTTGCAGCCTTTATGGAGGGACATCTAAGTATCACTTGGCTACATGATGTTCTTGCCTaGCCTGCTCAGGTGGTGACC +
Preference number: 4 (lower is better)
Translates to: GPHTFAAFMEGHLSITWLHDVLA*PAQVVT
Trigger: GGTCACCACCTGAGCAGGCCAGGCAAGAACATCATG...TAGCCAAGTGATACTTAGATGTCCCTCCATAAAGGCTGCAAAGGTATGGGGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR CAA 72 bp CTGTCCTGCTGGTGGAACCATGAAAATTGTGGCTTCTaGAGGACCCCATACCTTTGCAGCCTTTATGGAGGG +
Preference number: 4 (lower is better)
Translates to: LSCWWNHENCGF*RTPYLCSLYGG
Trigger: CCCTCCATAAAGGCTGCAAAGGTATGGGGTCCTCAAGAAGCCACAATTTTCATGGTTCCACCAGCAGGACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR CAA 72 bp GTTGGTTATTTTCCTCACCACAGCCACTGTCGTCTGTaGCCAGGTACTACCAACTGCCACAGAGACACCATC +
Preference number: 4 (lower is better)
Translates to: VGYFPHHSHCRL*PGTTNCHRDTI
Trigger: GATGGTGTCTCTGTGGCAGTTGGTAGTACCTGGCAACAGACGACAGTGGCTGTGGTGAGGAAAATAACCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
CDS-3UTR GCA 90 bp AACTCACAAGAGGTTAAAAAGTTCCTCTTGTTCTGTCCTGCTGGTGGAACCATGCCTCTTGCAGGCTGCTaGGGCGTGCTTGGACTGAAA +
Preference number: 4 (lower is better)
Translates to: NSQEVKKFLLFCPAGGTMPLAGC*GVLGLK
Trigger: TTTCAGTCCAAGCACGCCGCAGCAGCCTGCAAGAGG...CATGGTTCCACCAGCAGGACAGAACAAGAGGAACTTTTTAACCTCTTGTGAGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
CDS-3UTR GCA 90 bp AACTCACAAGAGGTTAAAAAGTTCCTCTTGTTCTGTCCTGCTGGTGGAACCATGAGGAACTGCTTCTCCTaGCCCTTGATCCGGGGCTGT +
Preference number: 4 (lower is better)
Translates to: NSQEVKKFLLFCPAGGTMRNCFS*PLIRGC
Trigger: ACAGCCCCGGATCAAGGGGCAGGAGAAGCAGTTCCT...CATGGTTCCACCAGCAGGACAGAACAAGAGGAACTTTTTAACCTCTTGTGAGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CCA 90 bp GTTCCTCTTGTTCTGTCCTGCTGGTGGAACCATGAAAATTGTGGCTTCTTGAGGCCCTTAAGTGGTGAGTaGCCTTCTCTGGCTTTCTGC +
Preference number: 4 (lower is better)
Translates to: VPLVLSCWWNHENCGFLRPLSGE*PSLAFC
Trigger: GCAGAAAGCCAGAGAAGGCCACTCACCACTTAAGGG...CCTCAAGAAGCCACAATTTTCATGGTTCCACCAGCAGGACAGAACAAGAGGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR GCA 90 bp TATCCAAATGGCATGGAGAAAGGTAGCTTTGTCCATGAATATCCAAGCCTGGTGACCCTCACGGCTTGCTaGCTTCTCCCCATCATCTGT +
Preference number: 4 (lower is better)
Translates to: YPNGMEKGSFVHEYPSLVTLTAC*LLPIIC
Trigger: ACAGATGATGGGGAGAAGGCAGCAAGCCGTGAGGGT...CACCAGGCTTGGATATTCATGGACAAAGCTACCTTTCTCCATGCCATTTGGATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR GCA 90 bp GGCATGGAGAAAGGTAGCTTTGTCCATGAATATCCAAGCCTGGTGCCATCTCCCATGTGTAGTTCTCGATaGCAGCAAGGTCTAGGTAGT +
Preference number: 4 (lower is better)
Translates to: GMEKGSFVHEYPSLVPSPMCSSR*QQGLGS
Trigger: ACTACCTAGACCTTGCTGGCATCGAGAACTACACAT...GGGAGATGGCACCAGGCTTGGATATTCATGGACAAAGCTACCTTTCTCCATGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR CAA 72 bp ATGGTCACACTGCAGCAAAAGCAGGAACAGATGCTTTaGTGCCCTCATGTATGGGCTTTCTGGATGACACAG +
Preference number: 4 (lower is better)
Translates to: MVTLQQKQEQML*CPHVWAFWMTQ
Trigger: CTGTGTCATCCAGAAAGCCCATACATGAGGGCACAAAAGCATCTGTTCCTGCTTTTGCTGCAGTGTGACCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR CAA 72 bp TCAGGTCTTCGGGAATTCCTTAGAATAGGCACGGGGTaGAGGGGAAAGGAGATAAACATAAGGTTGTGTCGC +
Preference number: 4 (lower is better)
Translates to: SGLREFLRIGTG*RGKEINIRLCR
Trigger: GCGACACAACCTTATGTTTATCTCCTTTCCCCTCAACCCCGTGCCTATTCTAAGGAATTCCCGAAGACCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR CAA 72 bp ATGTATGTCTGTGTGAGGGTGTTGGAAGCCCTAGAATaGGAGTTACAGACAGTTGTGAACTGCCATGTGGGG +
Preference number: 4 (lower is better)
Translates to: MYVCVRVLEALE*ELQTVVNCHVG
Trigger: CCCCACATGGCAGTTCACAACTGTCTGTAACTCCAATTCTAGGGCTTCCAACACCCTCACACAGACATACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
CDS-3UTR CCA 90 bp CTCTGCTCAACAGTGCCCCCTCCACATTTGCTGATAATCTGGCCTCTTTGTTTTTGCTTGGAATGTGTGTaGCCCTGCCATGATGTTCTT +
Preference number: 4 (lower is better)
Translates to: LCSTVPPPHLLIIWPLCFCLECV*PCHDVL
Trigger: AAGAACATCATGGCAGGGCCACACACATTCCAAGCA...AAAACAAAGAGGCCAGATTATCAGCAAATGTGGAGGGGGCACTGTTGAGCAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR CAA 72 bp TGTACTGGTATCCAAATGGCATGGAGAAAGGTAGCTTaGTCCATGAATATCCAAGCCTGGTGCCATCTCCCT +
Preference number: 4 (lower is better)
Translates to: CTGIQMAWRKVA*SMNIQAWCHLP
Trigger: AGGGAGATGGCACCAGGCTTGGATATTCATGGACAAAGCTACCTTTCTCCATGCCATTTGGATACCAGTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR GCA 90 bp TACAACATAGAAACTTCACAAAAAGCATTGCCTTTTCTATTCAGGTACCCGAAGGCTCAATCTCTGTTCTaGCACGAGTGGGCTCCCGGT +
Preference number: 4 (lower is better)
Translates to: YNIETSQKALPFLFRYPKAQSLF*HEWAPG
Trigger: ACCGGGAGCCCACTCGTGGCAGAACAGAGATTGAGC...CTTCGGGTACCTGAATAGAAAAGGCAATGCTTTTTGTGAAGTTTCTATGTTGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CCA 90 bp TATCCAAATGGCATGGAGAAAGGTAGCTTTGTCCATGAATATCCAAGCCTGGTGTGCTTGGAATGTGTGTaGCCCTGCCATGATGTTCTT +
Preference number: 4 (lower is better)
Translates to: YPNGMEKGSFVHEYPSLVCLECV*PCHDVL
Trigger: AAGAACATCATGGCAGGGCCACACACATTCCAAGCA...CACCAGGCTTGGATATTCATGGACAAAGCTACCTTTCTCCATGCCATTTGGATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR TCA 90 bp TCTCAGAAAAGTGTTTTAATACAAGGGTATGTGTGCCTTGTTACAGAATGCACATGGAGGGTTCAGGGCTaGCAGTTAGCTTCACTCGAA +
Preference number: 4 (lower is better)
Translates to: SQKSVLIQGYVCLVTECTWRVQG*QLASLE
Trigger: TTCGAGTGAAGCTAACTGTCAGCCCTGAACCCTCCA...TGTGCATTCTGTAACAAGGCACACATACCCTTGTATTAAAACACTTTTCTGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR GCA 90 bp GGTGTGTCAGTACACTACCCACCGCTCTCAGAAAAGTGTTTTAATACAAGGGTAGCGTCAATGTTCAAGTaGTTCTTGCTAAGTCTCAGT +
Preference number: 4 (lower is better)
Translates to: GVSVHYPPLSEKCFNTRVASMFK*FLLSLS
Trigger: ACTGAGACTTAGCAAGAAGCACTTGAACATTGACGC...TACCCTTGTATTAAAACACTTTTCTGAGAGCGGTGGGTAGTGTACTGACACACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR CAA 72 bp TCTAGAAATCCCTTATTAAGAAGCATTGCTATGGAGTaGTGTGCGTCAAGCAGTATAAGCCAGGACGGTTCT +
Preference number: 4 (lower is better)
Translates to: SRNPLLRSIAME*CASSSISQDGS
Trigger: AGAACCGTCCTGGCTTATACTGCTTGACGCACACAACTCCATAGCAATGCTTCTTAATAAGGGATTTCTAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR CAA 72 bp TGGTGTTTTATCTACATGTATGTCTGTGTGAGGGTGTaGGAAGCCCTAGAATTGGAGTTACAGACAGTTGTG +
Preference number: 4 (lower is better)
Translates to: WCFIYMYVCVRV*EALELELQTVV
Trigger: CACAACTGTCTGTAACTCCAATTCTAGGGCTTCCAACACCCTCACACAGACATACATGTAGATAAAACACCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
CDS-3UTR TCA 90 bp TACAACATAGAAACTTCACAAAAAGCATTGCCTTTTCTATTCAGGTACCCGAAGCAAAGTCATACAATGTaGATGTCCATTCTTGGCGGT +
Preference number: 4 (lower is better)
Translates to: YNIETSQKALPFLFRYPKQSHTM*MSILGG
Trigger: ACCGCCAAGAATGGACATTCACATTGTATGACTTTG...CTTCGGGTACCTGAATAGAAAAGGCAATGCTTTTTGTGAAGTTTCTATGTTGTA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
3UTR CAA 72 bp ACTTTCATAAACTCACAAGAGGTTAAAAAGTTCCTCTaGTTCTGTCCTGCTGGTGGAACCATGAAAATTGTG +
Preference number: 4 (lower is better)
Translates to: TFINSQEVKKFL*FCPAGGTMKIV
Trigger: CACAATTTTCATGGTTCCACCAGCAGGACAGAACAAGAGGAACTTTTTAACCTCTTGTGAGTTTATGAAAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS GCA 90 bp GTTCCACACCGCTGCCCGCGCGCCGGTCCGTTTCTTCCGCTCCCCTaGGACCGCTCCCGTACGCAGGCACCACGAAGCTGTCCCCTTCGG +
Preference number: 5 (lower is better)
Translates to: VPHRCPRAGPFLPLP*DRSRTQAPRSCPLR
Trigger: CCGAAGGGGACAGCTTCGTGGTGCCTGCGTACGGGAGCGGTCGCAGGGGAGCGGAAGAAACGGACCGGCGCGCGGGCAGCGGTGTGGAAC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
CDS GCA 90 bp GTTCCACACCGCTGCCCGCGCGCCGGTCCGTTTCTTCCGCTCCCCTaGGACCGCTCCCGTACGCAGGCACCACGAAGCTGTCCCCGTGCT +
Preference number: 5 (lower is better)
Translates to: VPHRCPRAGPFLPLP*DRSRTQAPRSCPRA
Trigger: AGCACGGGGACAGCTTCGTGGTGCCTGCGTACGGGAGCGGTCGCAGGGGAGCGGAAGAAACGGACCGGCGCGCGGGCAGCGGTGTGGAAC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118096.2
CDS GCA 90 bp AGAGGTTTTCCTGGACCCTTAGGAGACCTGAGGAACTGCTTCTCCTaGCCCTTGATCCGGGGCTGTGCAGCCAGGGCCCGGGTGGCAGGC +
Preference number: 5 (lower is better)
Translates to: RGFPGPLGDLRNCFS*PLIRGCAARARVAG
Trigger: GCCTGCCACCCGGGCCCTGGCTGCACAGCCCCGGATCAAGGGGCAGGAGAAGCAGTTCCTCAGGTCTCCTAAGGGTCCAGGAAAACCTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS CCA 90 bp CCCTCACGGCTTGCTGCCTTCTCCCCATCATCTGTGCTGAAGAGCTaGCCCTGGCCCTCATGGCCCTCAGACTTCTCAGGGGGCAGCACA +
Preference number: 5 (lower is better)
Translates to: PSRLAAFSPSSVLKS*PWPSWPSDFSGGST
Trigger: TGTGCTGCCCCCTGAGAAGTCTGAGGGCCATGAGGGCCAGGGCCAGCTCTTCAGCACAGATGATGGGGAGAAGGCAGCAAGCCGTGAGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS GCA 90 bp AGGGCACTCGCACAGAGCAGGGCTGGGGATCAGCATTGGGCTTCCTaGTGTAGGCGGATAGCCTTCTGTCAGCCACTCGGGGCTCATCTG +
Preference number: 5 (lower is better)
Translates to: RALAQSRAGDQHWAS*CRRIAFCQPLGAHL
Trigger: CAGATGAGCCCCGAGTGGCTGACAGAAGGCTATCCGCCTACAGCAGGAAGCCCAATGCTGATCCCCAGCCCTGCTCTGTGCGAGTGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS CCA 90 bp GATCCGGGGCTGTGCAGCCAGGGCCCGGGTGGCAGGCTCATTAGCTaGTATGACATGCTCAGCCAGGACTTGAGACCTGCGGTGGTGTAT +
Preference number: 5 (lower is better)
Translates to: DPGLCSQGPGGRLIS*YDMLSQDLRPAVVY
Trigger: ATACACCACCGCAGGTCTCAAGTCCTGGCTGAGCATGTCATACCAGCTAATGAGCCTGCCACCCGGGCCCTGGCTGCACAGCCCCGGATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CAA 90 bp TCTACTGGGCACATGCCAGCCCCTGCTCTGTTCCCAAGGGCATTTGGGCAGAGTGGACTCTCTCTCCTCTaGCAGGCTGCTGCGGCGTGC +
Preference number: 5 (lower is better)
Translates to: STGHMPAPALFPRAFGQSGLSLL*QAAAAC
Trigger: GCACGCCGCAGCAGCCTGCAAGAGGAGAGAGAGTCC...ACTCTGCCCAAATGCCCTTGGGAACAGAGCAGGGGCTGGCATGTGCCCAGTAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
CDS CCA 90 bp GCCTTCTCCCCATCATCTGTGCTGAAGAGCTGGCCCTGGCCCTCATaGCCCTCAGACTTCTCAGGGGGCAGCACAACTTCTAGGGAACCC +
Preference number: 5 (lower is better)
Translates to: AFSPSSVLKSWPWPS*PSDFSGGSTTSREP
Trigger: GGGTTCCCTAGAAGTTGTGCTGCCCCCTGAGAAGTCTGAGGGCCATGAGGGCCAGGGCCAGCTCTTCAGCACAGATGATGGGGAGAAGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS CCA 90 bp CGGCTTGCTGCCTTCTCCCCATCATCTGTGCTGAAGAGCTGGCCCTaGCCCTCATGGCCCTCAGACTTCTCAGGGGGCAGCACAACTTCT +
Preference number: 5 (lower is better)
Translates to: RLAAFSPSSVLKSWP*PSWPSDFSGGSTTS
Trigger: AGAAGTTGTGCTGCCCCCTGAGAAGTCTGAGGGCCATGAGGGCCAGGGCCAGCTCTTCAGCACAGATGATGGGGAGAAGGCAGCAAGCCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS TCA 90 bp TGCTGTAGGCGGATAGCCTTCTGTCAGCCACTCGGGGCTCATCTGTaGGCTCAATCTCTGTTCTGCCACGAGTGGGCTCCCGGTCTTGGC +
Preference number: 5 (lower is better)
Translates to: CCRRIAFCQPLGAHL*AQSLFCHEWAPGLG
Trigger: GCCAAGACCGGGAGCCCACTCGTGGCAGAACAGAGATTGAGCTCACAGATGAGCCCCGAGTGGCTGACAGAAGGCTATCCGCCTACAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS CCA 90 bp CGTGGGCATCCGACTCTTGTGATCGGGACCTGCTTGGAATGTGTGTaGCCCTGCCATGATGTTCTTGCCTGGCCTGCTCAGGTGGTGACC +
Preference number: 5 (lower is better)
Translates to: RGHPTLVIGTCLECV*PCHDVLAWPAQVVT
Trigger: GGTCACCACCTGAGCAGGCCAGGCAAGAACATCATGGCAGGGCCACACACATTCCAAGCAGGTCCCGATCACAAGAGTCGGATGCCCACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CAA 90 bp TCCCCACTTCCCATGCTGCTGCAGCTGGACCATGGCCCTAGGTGTCATTGGGGATTGAGCAGCTCCTGCTaGTCCCGTGAGCGATGTTCC +
Preference number: 5 (lower is better)
Translates to: SPLPMLLQLDHGPRCHWGLSSSC*SRERCS
Trigger: GGAACATCGCTCACGGGACAAGCAGGAGCTGCTCAA...TCCCCAATGACACCTAGGGCCATGGTCCAGCTGCAGCAGCATGGGAAGTGGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
CDS-3UTR CAA 90 bp TGTATTCTCTACTGGGCACATGCCAGCCCCTGCTCTGTTCCCAAGGGCATTTGGTGCTTCTCCTGCCCCTaGATCCGGGGCTGTGCAGCC +
Preference number: 5 (lower is better)
Translates to: CILYWAHASPCSVPKGIWCFSCP*IRGCAA
Trigger: GGCTGCACAGCCCCGGATCAAGGGGCAGGAGAAGCA...CCAAATGCCCTTGGGAACAGAGCAGGGGCTGGCATGTGCCCAGTAGAGAATACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CAA 90 bp CTGTATTCTCTACTGGGCACATGCCAGCCCCTGCTCTGTTCCCAAGGGCATTTGTGCTTCTCCTGCCCCTaGATCCGGGGCTGTGCAGCC +
Preference number: 5 (lower is better)
Translates to: LYSLLGTCQPLLCSQGHLCFSCP*IRGCAA
Trigger: GGCTGCACAGCCCCGGATCAAGGGGCAGGAGAAGCA...CAAATGCCCTTGGGAACAGAGCAGGGGCTGGCATGTGCCCAGTAGAGAATACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS GCA 90 bp CATCCGACTCTTGTGATCGGGACCTGCTTGGAATGTGTGTGGCCCTaGCATGATGTTCTTGCCTGGCCTGCTCAGGTGGTGACCCAGGAC +
Preference number: 5 (lower is better)
Translates to: HPTLVIGTCLECVWP*HDVLAWPAQVVTQD
Trigger: GTCCTGGGTCACCACCTGAGCAGGCCAGGCAAGAACATCATGGCAGGGCCACACACATTCCAAGCAGGTCCCGATCACAAGAGTCGGATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS GCA 90 bp GGCAGGTCCCGTACTACTTCATGCTCCACCATGGTAGGCTGGCCATaGCCCTTAAGTGGTGAGTGGCCTTCTCTGGCTTTCTGCCGGTAC +
Preference number: 5 (lower is better)
Translates to: GRSRTTSCSTMVGWP*PLSGEWPSLAFCRY
Trigger: GTACCGGCAGAAAGCCAGAGAAGGCCACTCACCACTTAAGGGGCATGGCCAGCCTACCATGGTGGAGCATGAAGTAGTACGGGACCTGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CAA 90 bp TCTACTGGGCACATGCCAGCCCCTGCTCTGTTCCCAAGGGCATTTGGGCAGAGTACTTCTAGGGAACCCTaGTCGTCCCAGAAAGGCCCC +
Preference number: 5 (lower is better)
Translates to: STGHMPAPALFPRAFGQSTSREP*SSQKGP
Trigger: GGGGCCTTTCTGGGACGACAAGGGTTCCCTAGAAGT...ACTCTGCCCAAATGCCCTTGGGAACAGAGCAGGGGCTGGCATGTGCCCAGTAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CAA 90 bp CCACTGTCGTCTGTTGCCAGGTACTACCAACTGCCACAGAGACACCATCCTGGCAGAGCTTTCCCTGGCTaGCCACTGCCTGGTGTCCCA +
Preference number: 5 (lower is better)
Translates to: PLSSVARYYQLPQRHHPGRAFPG*PLPGVP
Trigger: TGGGACACCAGGCAGTGGCAAGCCAGGGAAAGCTCT...GCCAGGATGGTGTCTCTGTGGCAGTTGGTAGTACCTGGCAACAGACGACAGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
CDS TCA 90 bp GACTCTTGTGATCGGGACCTGCTTGGAATGTGTGTGGCCCTGCCATaGTGTTCTTGCCTGGCCTGCTCAGGTGGTGACCCAGGACCAAAC +
Preference number: 5 (lower is better)
Translates to: DSCDRDLLGMCVALP*CSCLACSGGDPGPN
Trigger: GTTTGGTCCTGGGTCACCACCTGAGCAGGCCAGGCAAGAACATCATGGCAGGGCCACACACATTCCAAGCAGGTCCCGATCACAAGAGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS GCA 90 bp GTTCAAGTGCTTCTTGCTAAGTCTCAGTGGACCCTCACGGCTTGCTaGCTTCTCCCCATCATCTGTGCTGAAGAGCTGGCCCTGGCCCTC +
Preference number: 5 (lower is better)
Translates to: VQVLLAKSQWTLTAC*LLPIICAEELALAL
Trigger: GAGGGCCAGGGCCAGCTCTTCAGCACAGATGATGGGGAGAAGGCAGCAAGCCGTGAGGGTCCACTGAGACTTAGCAAGAAGCACTTGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS CCA 90 bp TCTGTGAGCTCAATCTCTGTTCTGCCACGAGTGGGCTCCCGGTCTTaGCCAGTGAGAGGACATTCCTTCTTGCTGGAGGGTTCAGGGCTG +
Preference number: 5 (lower is better)
Translates to: SVSSISVLPRVGSRS*PVRGHSFLLEGSGL
Trigger: CAGCCCTGAACCCTCCAGCAAGAAGGAATGTCCTCTCACTGGCCAAGACCGGGAGCCCACTCGTGGCAGAACAGAGATTGAGCTCACAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS CCA 90 bp GGCCTGCAGGCAATAGCTGAGAGCTTTCCCTGGCTTGCCACTGCCTaGTGTCCCAAGAGGTTTTCCTGGACCCTTAGGAGACCTGAGGAA +
Preference number: 5 (lower is better)
Translates to: GLQAIAESFPWLATA*CPKRFSWTLRRPEE
Trigger: TTCCTCAGGTCTCCTAAGGGTCCAGGAAAACCTCTTGGGACACCAGGCAGTGGCAAGCCAGGGAAAGCTCTCAGCTATTGCCTGCAGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CAA 90 bp ATCTACCTAGGATGCTGGAAGCTCGACACCAAGCCTCATGCTGCCCACGGAACGACTTCTAGGGAACCCTaGTCGTCCCAGAAAGGCCCC +
Preference number: 5 (lower is better)
Translates to: IYLGCWKLDTKPHAAHGTTSREP*SSQKGP
Trigger: GGGGCCTTTCTGGGACGACAAGGGTTCCCTAGAAGT...CGTTCCGTGGGCAGCATGAGGCTTGGTGTCGAGCTTCCAGCATCCTAGGTAGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS TCA 90 bp GACTTGAGACCTGCGGTGGTGTATAGCGTGGGCATCCGACTCTTGTaGTCGGGACCTGCTTGGAATGTGTGTGGCCCTGCCATGATGTTC +
Preference number: 5 (lower is better)
Translates to: DLRPAVVYSVGIRLL*SGPAWNVCGPAMMF
Trigger: GAACATCATGGCAGGGCCACACACATTCCAAGCAGGTCCCGATCACAAGAGTCGGATGCCCACGCTATACACCACCGCAGGTCTCAAGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS TCA 90 bp CGGGTGGCAGGCTCATTAGCTGGTATGACATGCTCAGCCAGGACTTaGGACCTGCGGTGGTGTATAGCGTGGGCATCCGACTCTTGTGAT +
Preference number: 5 (lower is better)
Translates to: RVAGSLAGMTCSART*DLRWCIAWASDSCD
Trigger: ATCACAAGAGTCGGATGCCCACGCTATACACCACCGCAGGTCTCAAGTCCTGGCTGAGCATGTCATACCAGCTAATGAGCCTGCCACCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS TCA 90 bp GTGTGTGGCCCTGCCATGATGTTCTTGCCTGGCCTGCTCAGGTGGTaGCCCAGGACCAAACTTAGATGTGTAGTTCTCGATGCCAGCAAG +
Preference number: 5 (lower is better)
Translates to: VCGPAMMFLPGLLRW*PRTKLRCVVLDASK
Trigger: CTTGCTGGCATCGAGAACTACACATCTAAGTTTGGTCCTGGGTCACCACCTGAGCAGGCCAGGCAAGAACATCATGGCAGGGCCACACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS TCA 90 bp TACTTCATGCTCCACCATGGTAGGCTGGCCATGCCCCTTAAGTGGTaGGTGGCCTTCTCTGGCTTTCTGCCGGTACCGCTTGTGACCATA +
Preference number: 5 (lower is better)
Translates to: YFMLHHGRLAMPLKW*VAFSGFLPVPLVTI
Trigger: TATGGTCACAAGCGGTACCGGCAGAAAGCCAGAGAAGGCCACTCACCACTTAAGGGGCATGGCCAGCCTACCATGGTGGAGCATGAAGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS GCA 90 bp AATGTTCAAGTGCTTCTTGCTAAGTCTCAGTGGACCCTCACGGCTTaGTGCCTTCTCCCCATCATCTGTGCTGAAGAGCTGGCCCTGGCC +
Preference number: 5 (lower is better)
Translates to: NVQVLLAKSQWTLTA*CLLPIICAEELALA
Trigger: GGCCAGGGCCAGCTCTTCAGCACAGATGATGGGGAGAAGGCAGCAAGCCGTGAGGGTCCACTGAGACTTAGCAAGAAGCACTTGAACATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CAA 90 bp CCCTCATGTATGGGCTTTCTGGATGACACAGGAGCACGTGTCCCTGGTAACCATAGAGGACATTCCTTCTaGCTGGAGGGTTCAGGGCTG +
Preference number: 5 (lower is better)
Translates to: PSCMGFLDDTGARVPGNHRGHSF*LEGSGL
Trigger: CAGCCCTGAACCCTCCAGCAAGAAGGAATGTCCTCT...ATGGTTACCAGGGACACGTGCTCCTGTGTCATCCAGAAAGCCCATACATGAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CAA 90 bp CCTAGAATTGGAGTTACAGACAGTTGTGAACTGCCATGTGGGGGTGCTGGGAATTCCTTAGGGTCTCCATaGAGCAGCTCCTGCTTGTCC +
Preference number: 5 (lower is better)
Translates to: PRIGVTDSCELPCGGAGNSLGSP*SSSCLS
Trigger: GGACAAGCAGGAGCTGCTCAATGGAGACCCTAAGGA...ATTCCCAGCACCCCCACATGGCAGTTCACAACTGTCTGTAACTCCAATTCTAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022051.14
CDS-3UTR CAA 90 bp TGTGCCCCCTTGACATCTGCAGCTGGTGTTGAGCCAGGGGATGCTGTATTCTCTTGTGAATGTCCATTCTaGGCGGTTGTCTTCTTCCAC +
Preference number: 5 (lower is better)
Translates to: CAPLTSAAGVEPGDAVFSCECPF*AVVFFH
Trigger: GTGGAAGAAGACAACCGCCAAGAATGGACATTCACA...AGAGAATACAGCATCCCCTGGCTCAACACCAGCTGCAGATGTCAAGGGGGCACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CAA 90 bp GGACCCCATACCTTTGCAGCCTTTATGGAGGGACATCTAAGTATCACTTGGCTAAGAGGACATTCCTTCTaGCTGGAGGGTTCAGGGCTG +
Preference number: 5 (lower is better)
Translates to: GPHTFAAFMEGHLSITWLRGHSF*LEGSGL
Trigger: CAGCCCTGAACCCTCCAGCAAGAAGGAATGTCCTCT...TAGCCAAGTGATACTTAGATGTCCCTCCATAAAGGCTGCAAAGGTATGGGGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CAA 90 bp AACTCACAAGAGGTTAAAAAGTTCCTCTTGTTCTGTCCTGCTGGTGGAACCATGAGAGCTTTCCCTGGCTaGCCACTGCCTGGTGTCCCA +
Preference number: 5 (lower is better)
Translates to: NSQEVKKFLLFCPAGGTMRAFPG*PLPGVP
Trigger: TGGGACACCAGGCAGTGGCAAGCCAGGGAAAGCTCT...CATGGTTCCACCAGCAGGACAGAACAAGAGGAACTTTTTAACCTCTTGTGAGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CAA 90 bp AACTCACAAGAGGTTAAAAAGTTCCTCTTGTTCTGTCCTGCTGGTGGAACCATGTTGAGCAGCTCCTGCTaGTCCCGTGAGCGATGTTCC +
Preference number: 5 (lower is better)
Translates to: NSQEVKKFLLFCPAGGTMLSSSC*SRERCS
Trigger: GGAACATCGCTCACGGGACAAGCAGGAGCTGCTCAA...CATGGTTCCACCAGCAGGACAGAACAAGAGGAACTTTTTAACCTCTTGTGAGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CAA 90 bp CTTCGGGAATTCCTTAGAATAGGCACGGGGTTGAGGGGAAAGGAGATAAACATATCCTTAGGGTCTCCATaGAGCAGCTCCTGCTTGTCC +
Preference number: 5 (lower is better)
Translates to: LREFLRIGTGLRGKEINISLGSP*SSSCLS
Trigger: GGACAAGCAGGAGCTGCTCAATGGAGACCCTAAGGA...TATGTTTATCTCCTTTCCCCTCAACCCCGTGCCTATTCTAAGGAATTCCCGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CAA 90 bp CTGTATTCTCTACTGGGCACATGCCAGCCCCTGCTCTGTTCCCAAGGGCATTTGGTGACTTTCCCACTGTaGTCAAAGTCATACAATGTG +
Preference number: 5 (lower is better)
Translates to: LYSLLGTCQPLLCSQGHLVTFPL*SKSYNV
Trigger: CACATTGTATGACTTTGACAACAGTGGGAAAGTCAC...CAAATGCCCTTGGGAACAGAGCAGGGGCTGGCATGTGCCCAGTAGAGAATACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CAA 90 bp GTCCCTCTGCTCAACAGTGCCCCCTCCACATTTGCTGATAATCTGGCCTCTTTGGTGACTTTCCCACTGTaGTCAAAGTCATACAATGTG +
Preference number: 5 (lower is better)
Translates to: VPLLNSAPSTFADNLASLVTFPL*SKSYNV
Trigger: CACATTGTATGACTTTGACAACAGTGGGAAAGTCAC...CAAAGAGGCCAGATTATCAGCAAATGTGGAGGGGGCACTGTTGAGCAGAGGGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS-3UTR CAA 90 bp CTCTGCTCAACAGTGCCCCCTCCACATTTGCTGATAATCTGGCCTCTTTGTTTTTGTGAATGTCCATTCTaGGCGGTTGTCTTCTTCCAC +
Preference number: 5 (lower is better)
Translates to: LCSTVPPPHLLIIWPLCFCECPF*AVVFFH
Trigger: GTGGAAGAAGACAACCGCCAAGAATGGACATTCACA...AAAACAAAGAGGCCAGATTATCAGCAAATGTGGAGGGGGCACTGTTGAGCAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS GCA 72 bp CGCTGCCCGCGCGCCGGTCCGTTTCTTCCGCTCCCCTaGGACCGCTCCCGTACGCAGGCACCACGAAGCTGT +
Preference number: 6 (lower is better)
Translates to: RCPRAGPFLPLP*DRSRTQAPRSC
Trigger: ACAGCTTCGTGGTGCCTGCGTACGGGAGCGGTCGCAGGGGAGCGGAAGAAACGGACCGGCGCGCGGGCAGCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS GCA 72 bp CCTGGACCCTTAGGAGACCTGAGGAACTGCTTCTCCTaGCCCTTGATCCGGGGCTGTGCAGCCAGGGCCCGG +
Preference number: 6 (lower is better)
Translates to: PGPLGDLRNCFS*PLIRGCAARAR
Trigger: CCGGGCCCTGGCTGCACAGCCCCGGATCAAGGGGCAGGAGAAGCAGTTCCTCAGGTCTCCTAAGGGTCCAGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS TCA 72 bp CTTAGGGTCTCCATTGAGCAGCTCCTGCTTGTCCCGTaGGCGATGTTCCACACCGCTGCCCGCGCGCCGGTC +
Preference number: 6 (lower is better)
Translates to: LRVSIEQLLLVP*AMFHTAARAPV
Trigger: GACCGGCGCGCGGGCAGCGGTGTGGAACATCGCTCACGGGACAAGCAGGAGCTGCTCAATGGAGACCCTAAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS GCA 72 bp GCACAGAGCAGGGCTGGGGATCAGCATTGGGCTTCCTaGTGTAGGCGGATAGCCTTCTGTCAGCCACTCGGG +
Preference number: 6 (lower is better)
Translates to: AQSRAGDQHWAS*CRRIAFCQPLG
Trigger: CCCGAGTGGCTGACAGAAGGCTATCCGCCTACAGCAGGAAGCCCAATGCTGATCCCCAGCCCTGCTCTGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS CCA 72 bp CTGTGCAGCCAGGGCCCGGGTGGCAGGCTCATTAGCTaGTATGACATGCTCAGCCAGGACTTGAGACCTGCG +
Preference number: 6 (lower is better)
Translates to: LCSQGPGGRLIS*YDMLSQDLRPA
Trigger: CGCAGGTCTCAAGTCCTGGCTGAGCATGTCATACCAGCTAATGAGCCTGCCACCCGGGCCCTGGCTGCACAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS TCA 72 bp CTGTTCTGCCACGAGTGGGCTCCCGGTCTTGGCCAGTaGGAGGACATTCCTTCTTGCTGGAGGGTTCAGGGC +
Preference number: 6 (lower is better)
Translates to: LFCHEWAPGLGQ*EDIPSCWRVQG
Trigger: GCCCTGAACCCTCCAGCAAGAAGGAATGTCCTCTCACTGGCCAAGACCGGGAGCCCACTCGTGGCAGAACAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS TCA 72 bp CCTGCGGTGGTGTATAGCGTGGGCATCCGACTCTTGTaGTCGGGACCTGCTTGGAATGTGTGTGGCCCTGCC +
Preference number: 6 (lower is better)
Translates to: PAVVYSVGIRLL*SGPAWNVCGPA
Trigger: GGCAGGGCCACACACATTCCAAGCAGGTCCCGATCACAAGAGTCGGATGCCCACGCTATACACCACCGCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS CCA 72 bp CTTGCTGCCTTCTCCCCATCATCTGTGCTGAAGAGCTaGCCCTGGCCCTCATGGCCCTCAGACTTCTCAGGG +
Preference number: 6 (lower is better)
Translates to: LAAFSPSSVLKS*PWPSWPSDFSG
Trigger: CCCTGAGAAGTCTGAGGGCCATGAGGGCCAGGGCCAGCTCTTCAGCACAGATGATGGGGAGAAGGCAGCAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS CAA 90 bp AGGGAACCCTTGTCGTCCCAGAAAGGCCCCTCCTTAGGGTCTCCATaGAGCAGCTCCTGCTTGTCCCGTGAGCGATGTTCCACACCGCTG +
Preference number: 6 (lower is better)
Translates to: REPLSSQKGPSLGSP*SSSCLSRERCSTPL
Trigger: CAGCGGTGTGGAACATCGCTCACGGGACAAGCAGGAGCTGCTCAATGGAGACCCTAAGGAGGGGCCTTTCTGGGACGACAAGGGTTCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS TCA 72 bp GATCGGGACCTGCTTGGAATGTGTGTGGCCCTGCCATaGTGTTCTTGCCTGGCCTGCTCAGGTGGTGACCCA +
Preference number: 6 (lower is better)
Translates to: DRDLLGMCVALP*CSCLACSGGDP
Trigger: TGGGTCACCACCTGAGCAGGCCAGGCAAGAACATCATGGCAGGGCCACACACATTCCAAGCAGGTCCCGATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS TCA 72 bp CTCCACCATGGTAGGCTGGCCATGCCCCTTAAGTGGTaGGTGGCCTTCTCTGGCTTTCTGCCGGTACCGCTT +
Preference number: 6 (lower is better)
Translates to: LHHGRLAMPLKW*VAFSGFLPVPL
Trigger: AAGCGGTACCGGCAGAAAGCCAGAGAAGGCCACTCACCACTTAAGGGGCATGGCCAGCCTACCATGGTGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS CAA 90 bp CCACGAGTGGGCTCCCGGTCTTGGCCAGTGAGAGGACATTCCTTCTaGCTGGAGGGTTCAGGGCTGACAGTTAGCTTCACTCGAAGGGTC +
Preference number: 6 (lower is better)
Translates to: PRVGSRSWPVRGHSF*LEGSGLTVSFTRRV
Trigger: GACCCTTCGAGTGAAGCTAACTGTCAGCCCTGAACCCTCCAGCAAGAAGGAATGTCCTCTCACTGGCCAAGACCGGGAGCCCACTCGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS GCA 72 bp CTTGTGATCGGGACCTGCTTGGAATGTGTGTGGCCCTaGCATGATGTTCTTGCCTGGCCTGCTCAGGTGGTG +
Preference number: 6 (lower is better)
Translates to: LVIGTCLECVWP*HDVLAWPAQVV
Trigger: CACCACCTGAGCAGGCCAGGCAAGAACATCATGGCAGGGCCACACACATTCCAAGCAGGTCCCGATCACAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS CCA 72 bp CCGACTCTTGTGATCGGGACCTGCTTGGAATGTGTGTaGCCCTGCCATGATGTTCTTGCCTGGCCTGCTCAG +
Preference number: 6 (lower is better)
Translates to: PTLVIGTCLECV*PCHDVLAWPAQ
Trigger: CTGAGCAGGCCAGGCAAGAACATCATGGCAGGGCCACACACATTCCAAGCAGGTCCCGATCACAAGAGTCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS CAA 72 bp GACTTCTCAGGGGGCAGCACAACTTCTAGGGAACCCTaGTCGTCCCAGAAAGGCCCCTCCTTAGGGTCTCCA +
Preference number: 6 (lower is better)
Translates to: DFSGGSTTSREP*SSQKGPSLGSP
Trigger: TGGAGACCCTAAGGAGGGGCCTTTCTGGGACGACAAGGGTTCCCTAGAAGTTGTGCTGCCCCCTGAGAAGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS CAA 72 bp CTCAATCTCTGTTCTGCCACGAGTGGGCTCCCGGTCTaGGCCAGTGAGAGGACATTCCTTCTTGCTGGAGGG +
Preference number: 6 (lower is better)
Translates to: LNLCSATSGLPV*ASERTFLLAGG
Trigger: CCCTCCAGCAAGAAGGAATGTCCTCTCACTGGCCAAGACCGGGAGCCCACTCGTGGCAGAACAGAGATTGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS TCA 72 bp GGCTCATTAGCTGGTATGACATGCTCAGCCAGGACTTaGGACCTGCGGTGGTGTATAGCGTGGGCATCCGAC +
Preference number: 6 (lower is better)
Translates to: GSLAGMTCSART*DLRWCIAWASD
Trigger: GTCGGATGCCCACGCTATACACCACCGCAGGTCTCAAGTCCTGGCTGAGCATGTCATACCAGCTAATGAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS GCA 72 bp CTTCTTGCTAAGTCTCAGTGGACCCTCACGGCTTGCTaGCTTCTCCCCATCATCTGTGCTGAAGAGCTGGCC +
Preference number: 6 (lower is better)
Translates to: LLAKSQWTLTAC*LLPIICAEELA
Trigger: GGCCAGCTCTTCAGCACAGATGATGGGGAGAAGGCAGCAAGCCGTGAGGGTCCACTGAGACTTAGCAAGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS CCA 72 bp AGGTCCCGTACTACTTCATGCTCCACCATGGTAGGCTaGCCATGCCCCTTAAGTGGTGAGTGGCCTTCTCTG +
Preference number: 6 (lower is better)
Translates to: RSRTTSCSTMVG*PCPLSGEWPSL
Trigger: CAGAGAAGGCCACTCACCACTTAAGGGGCATGGCCAGCCTACCATGGTGGAGCATGAAGTAGTACGGGACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS CAA 72 bp GGCTCCCGGTCTTGGCCAGTGAGAGGACATTCCTTCTaGCTGGAGGGTTCAGGGCTGACAGTTAGCTTCACT +
Preference number: 6 (lower is better)
Translates to: GSRSWPVRGHSF*LEGSGLTVSFT
Trigger: AGTGAAGCTAACTGTCAGCCCTGAACCCTCCAGCAAGAAGGAATGTCCTCTCACTGGCCAAGACCGGGAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS GCA 72 bp CGTACTACTTCATGCTCCACCATGGTAGGCTGGCCATaGCCCTTAAGTGGTGAGTGGCCTTCTCTGGCTTTC +
Preference number: 6 (lower is better)
Translates to: RTTSCSTMVGWP*PLSGEWPSLAF
Trigger: GAAAGCCAGAGAAGGCCACTCACCACTTAAGGGGCATGGCCAGCCTACCATGGTGGAGCATGAAGTAGTACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS CAA 72 bp AGGCTCATTAGCTGGTATGACATGCTCAGCCAGGACTaGAGACCTGCGGTGGTGTATAGCGTGGGCATCCGA +
Preference number: 6 (lower is better)
Translates to: RLISWYDMLSQD*RPAVVYSVGIR
Trigger: TCGGATGCCCACGCTATACACCACCGCAGGTCTCAAGTCCTGGCTGAGCATGTCATACCAGCTAATGAGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS TCA 72 bp CCTGCCATGATGTTCTTGCCTGGCCTGCTCAGGTGGTaGCCCAGGACCAAACTTAGATGTGTAGTTCTCGAT +
Preference number: 6 (lower is better)
Translates to: PAMMFLPGLLRW*PRTKLRCVVLD
Trigger: ATCGAGAACTACACATCTAAGTTTGGTCCTGGGTCACCACCTGAGCAGGCCAGGCAAGAACATCATGGCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS CCA 72 bp TGCGTCAATGTTCAAGTGCTTCTTGCTAAGTCTCAGTaGACCCTCACGGCTTGCTGCCTTCTCCCCATCATC +
Preference number: 6 (lower is better)
Translates to: CVNVQVLLAKSQ*TLTACCLLPII
Trigger: GATGATGGGGAGAAGGCAGCAAGCCGTGAGGGTCCACTGAGACTTAGCAAGAAGCACTTGAACATTGACGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2
CDS GCA 72 bp TCTTGGCGGTTGTCTTCTTCCACTGAGACGTCACACTaGAGTGCGTCAATGTTCAAGTGCTTCTTGCTAAGT +
Preference number: 6 (lower is better)
Translates to: SWRLSSSTETSH*SASMFKCFLLS
Trigger: ACTTAGCAAGAAGCACTTGAACATTGACGCACTGCAGTGTGACGTCTCAGTGGAAGAAGACAACCGCCAAGA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000022051.14
ENSMUST00000118096.2