Pregenerated sensors for NKAPL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000059395Ensembl transcript IDs: ENSMUST00000068235.6
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | AACCATTTACTATTACTTTGGCCATACAAAGCCTTTGTTGTTAAACGTCCCACAGCCTCCATTCGGCGATaGCTGCTACCACTCATGACG | + |
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Preference number: 4 (lower is better) Translates to: NHLLLLWPYKAFVVKRPTASIRR*LLPLMT Trigger: CGTCATGAGTGGTAGCAGGCATCGCCGAATGGAGGC...TGTGGGACGTTTAACAACAAAGGCTTTGTATGGCCAAAGTAATAGTAAATGGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068235.6 |
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| CDS-3UTR CCA 90 bp | CTATTACTTTGGCCATACAAAGCCTTTGTTGTTAAACGTCCCACAGTGAAACAAGGTATCCACCACAGATaGGAGAGGAAGAGCAGGCAA | + |
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Preference number: 4 (lower is better) Translates to: LLLWPYKAFVVKRPTVKQGIHHR*ERKSRQ Trigger: TTGCCTGCTCTTCCTCTCCCATCTGTGGTGGATACC...TTGTTTCACTGTGGGACGTTTAACAACAAAGGCTTTGTATGGCCAAAGTAATAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068235.6 |
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| CDS-3UTR CCA 90 bp | CATTTACTATTACTTTGGCCATACAAAGCCTTTGTTGTTAAACGTCCCACAGTGTCCTTTTCCTTCTCCTaGTCCTCAGCCCACGAAGGA | + |
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Preference number: 4 (lower is better) Translates to: HLLLLWPYKAFVVKRPTVSFSFS*SSAHEG Trigger: TCCTTCGTGGGCTGAGGACCAGGAGAAGGAAAAGGA...CACTGTGGGACGTTTAACAACAAAGGCTTTGTATGGCCAAAGTAATAGTAAATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068235.6 |
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| CDS-3UTR CCA 90 bp | CTATTACTTTGGCCATACAAAGCCTTTGTTGTTAAACGTCCCACAGTGAAACAACTGGCTCAGGAATCTTaGGTGACAGTCCCCATACCT | + |
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Preference number: 4 (lower is better) Translates to: LLLWPYKAFVVKRPTVKQLAQES*VTVPIP Trigger: AGGTATGGGGACTGTCACCCAAGATTCCTGAGCCAG...TTGTTTCACTGTGGGACGTTTAACAACAAAGGCTTTGTATGGCCAAAGTAATAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068235.6 |
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| CDS-3UTR TCA 90 bp | CTATTACTTTGGCCATACAAAGCCTTTGTTGTTAAACGTCCCACAGTGAAACAATGGCAAGTCCCTTTCTaGAGCTTTGCAGCTTATGTC | + |
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Preference number: 4 (lower is better) Translates to: LLLWPYKAFVVKRPTVKQWQVPF*SFAAYV Trigger: GACATAAGCTGCAAAGCTTCAGAAAGGGACTTGCCA...TTGTTTCACTGTGGGACGTTTAACAACAAAGGCTTTGTATGGCCAAAGTAATAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068235.6 |
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| CDS-3UTR GCA 90 bp | CATTTACTATTACTTTGGCCATACAAAGCCTTTGTTGTTAAACGTCCCACAGTGGGCCTATTAAATCCATaGTCTCTGCACTCATCGACT | + |
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Preference number: 4 (lower is better) Translates to: HLLLLWPYKAFVVKRPTVGLLNP*SLHSST Trigger: AGTCGATGAGTGCAGAGAGCATGGATTTAATAGGCC...CACTGTGGGACGTTTAACAACAAAGGCTTTGTATGGCCAAAGTAATAGTAAATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068235.6 |
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| CDS-3UTR GCA 90 bp | AACCATTTACTATTACTTTGGCCATACAAAGCCTTTGTTGTTAAACGTCCCACAATATTCAGCCATTGCTaGACCTTCACCAGGAAGCAG | + |
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Preference number: 4 (lower is better) Translates to: NHLLLLWPYKAFVVKRPTIFSHC*TFTRKQ Trigger: CTGCTTCCTGGTGAAGGTGCAGCAATGGCTGAATAT...TGTGGGACGTTTAACAACAAAGGCTTTGTATGGCCAAAGTAATAGTAAATGGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068235.6 |
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| CDS-3UTR TCA 90 bp | AACCATTTACTATTACTTTGGCCATACAAAGCCTTTGTTGTTAAACGTCCCACAGAACTGCTACTCTTCTaGTTCTTCACCTCATCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: NHLLLLWPYKAFVVKRPTELLLF*FFTSSS Trigger: TGAAGATGAGGTGAAGAATCAGAAGAGTAGCAGTTC...TGTGGGACGTTTAACAACAAAGGCTTTGTATGGCCAAAGTAATAGTAAATGGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068235.6 |
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| CDS-3UTR CCA 90 bp | AACCATTTACTATTACTTTGGCCATACAAAGCCTTTGTTGTTAAACGTCCCACACACCTCATCTTCAGCTaGTGTATGTTCATCAGAATC | + |
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Preference number: 4 (lower is better) Translates to: NHLLLLWPYKAFVVKRPTHLIFS*CMFIRI Trigger: GATTCTGATGAACATACACCAGCTGAAGATGAGGTG...TGTGGGACGTTTAACAACAAAGGCTTTGTATGGCCAAAGTAATAGTAAATGGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068235.6 |
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| CDS-3UTR TCA 90 bp | CATTTACTATTACTTTGGCCATACAAAGCCTTTGTTGTTAAACGTCCCACAGTGTTCATTGGTGAAATCTaGACTGCTACTCTTCTGATT | + |
|
Preference number: 4 (lower is better) Translates to: HLLLLWPYKAFVVKRPTVFIGEI*TATLLI Trigger: AATCAGAAGAGTAGCAGTTCAGATTTCACCAATGAA...CACTGTGGGACGTTTAACAACAAAGGCTTTGTATGGCCAAAGTAATAGTAAATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068235.6 |
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| CDS-3UTR CCA 90 bp | AACCATTTACTATTACTTTGGCCATACAAAGCCTTTGTTGTTAAACGTCCCACACCATTTCTCGAAAGCTaGCTAGGATCTTATTTTCTC | + |
|
Preference number: 4 (lower is better) Translates to: NHLLLLWPYKAFVVKRPTPFLES*LGSYFL Trigger: GAGAAAATAAGATCCTAGCCAGCTTTCGAGAAATGG...TGTGGGACGTTTAACAACAAAGGCTTTGTATGGCCAAAGTAATAGTAAATGGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068235.6 |
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| CDS-3UTR GCA 90 bp | AACCATTTACTATTACTTTGGCCATACAAAGCCTTTGTTGTTAAACGTCCCACACTTCTTGAGCTGTTTTaGCCGATGTTTCTTTTTCTT | + |
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Preference number: 4 (lower is better) Translates to: NHLLLLWPYKAFVVKRPTLLELF*PMFLFL Trigger: AAGAAAAAGAAACATCGGGCAAAACAGCTCAAGAAG...TGTGGGACGTTTAACAACAAAGGCTTTGTATGGCCAAAGTAATAGTAAATGGTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068235.6 |
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| CDS CCA 90 bp | AAGGATCTCCCGCATAGTTGTGGTGGTAACGGTATCCACCACAGATaGGAGAGGAAGAGCAGGCAAGCGTACGGATCCCCAGCGGTAGCG | + |
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Preference number: 5 (lower is better) Translates to: KDLPHSCGGNGIHHR*ERKSRQAYGSPAVA Trigger: CGCTACCGCTGGGGATCCGTACGCTTGCCTGCTCTTCCTCTCCCATCTGTGGTGGATACCGTTACCACCACAACTATGCGGGAGATCCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068235.6 |
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| CDS GCA 90 bp | CTTGAGAGGTGTGTATCACAGGTGCTTCTGGGCCTATTAAATCCATaGTCTCTGCACTCATCGACTGTTCCATCCACGCATCTTCTGGCA | + |
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Preference number: 5 (lower is better) Translates to: LERCVSQVLLGLLNP*SLHSSTVPSTHLLA Trigger: TGCCAGAAGATGCGTGGATGGAACAGTCGATGAGTGCAGAGAGCATGGATTTAATAGGCCCAGAAGCACCTGTGATACACACCTCTCAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068235.6 |
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| CDS-3UTR CAA 90 bp | AACCATTTACTATTACTTTGGCCATACAAAGCCTTTGTTGTTAAACGTCCCACATCTGGCTCAGGAATCTaGGGTGACAGTCCCCATACC | + |
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Preference number: 5 (lower is better) Translates to: NHLLLLWPYKAFVVKRPTSGSGI*GDSPHT Trigger: GGTATGGGGACTGTCACCCAAGATTCCTGAGCCAGA...TGTGGGACGTTTAACAACAAAGGCTTTGTATGGCCAAAGTAATAGTAAATGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068235.6 |
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| CDS-3UTR CAA 90 bp | CTATTACTTTGGCCATACAAAGCCTTTGTTGTTAAACGTCCCACAGTGAAACAATTCCTTCAGCCTCCTTaGCCTATAACTCTCCTCCTT | + |
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Preference number: 5 (lower is better) Translates to: LLLWPYKAFVVKRPTVKQFLQPP*PITLLL Trigger: AAGGAGGAGAGTTATAGGCAAAGGAGGCTGAAGGAA...TTGTTTCACTGTGGGACGTTTAACAACAAAGGCTTTGTATGGCCAAAGTAATAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068235.6 |
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| CDS-3UTR CAA 90 bp | AACCATTTACTATTACTTTGGCCATACAAAGCCTTTGTTGTTAAACGTCCCACATTAGTCCTCTTCTTCTaGAGCTGTTTTGCCCGATGT | + |
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Preference number: 5 (lower is better) Translates to: NHLLLLWPYKAFVVKRPTLVLFF*SCFARC Trigger: ACATCGGGCAAAACAGCTCAAGAAGAAGAGGACTAA...TGTGGGACGTTTAACAACAAAGGCTTTGTATGGCCAAAGTAATAGTAAATGGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068235.6 |
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| CDS-3UTR CAA 90 bp | AACCATTTACTATTACTTTGGCCATACAAAGCCTTTGTTGTTAAACGTCCCACACAAAGGTTTCTCATCTaGAGAGGTGTGTATCACAGG | + |
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Preference number: 5 (lower is better) Translates to: NHLLLLWPYKAFVVKRPTQRFLI*RGVYHR Trigger: CCTGTGATACACACCTCTCAAGATGAGAAACCTTTG...TGTGGGACGTTTAACAACAAAGGCTTTGTATGGCCAAAGTAATAGTAAATGGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068235.6 |
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| CDS TCA 72 bp | CCAGCGGTAGCGGTCGTTCTCCAGACCTGGGGCGGCTaGTGGGATGCAGTGGCCGGACGCCCTGAGCACCCC | + |
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Preference number: 6 (lower is better) Translates to: PAVAVVLQTWGG*WDAVAGRPEHP Trigger: GGGGTGCTCAGGGCGTCCGGCCACTGCATCCCATCAGCCGCCCCAGGTCTGGAGAACGACCGCTACCGCTGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068235.6 |
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| CDS CAA 90 bp | AGGCGCTCCCAGCTCTCCAATCCTCTCTCTTTCCTTCAGCCTCCTTaGCCTATAACTCTCCTCCTTTTCCTTCTCCTGGTCCTCAGCCCA | + |
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Preference number: 6 (lower is better) Translates to: RRSQLSNPLSFLQPP*PITLLLFLLLVLSP Trigger: TGGGCTGAGGACCAGGAGAAGGAAAAGGAGGAGAGTTATAGGCAAAGGAGGCTGAAGGAAAGAGAGAGGATTGGAGAGCTGGGAGCGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068235.6 |
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| CDS GCA 72 bp | TGTGTATCACAGGTGCTTCTGGGCCTATTAAATCCATaGTCTCTGCACTCATCGACTGTTCCATCCACGCAT | + |
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Preference number: 6 (lower is better) Translates to: CVSQVLLGLLNP*SLHSSTVPSTH Trigger: ATGCGTGGATGGAACAGTCGATGAGTGCAGAGAGCATGGATTTAATAGGCCCAGAAGCACCTGTGATACACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068235.6 |
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| CDS TCA 72 bp | TTTTCTTCATTGGTGAAATCTGAACTGCTACTCTTCTaGTTCTTCACCTCATCTTCAGCTGGTGTATGTTCA | + |
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Preference number: 6 (lower is better) Translates to: FSSLVKSELLLF*FFTSSSAGVCS Trigger: TGAACATACACCAGCTGAAGATGAGGTGAAGAATCAGAAGAGTAGCAGTTCAGATTTCACCAATGAAGAAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068235.6 |
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