Pregenerated sensors for NKAP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000016409Ensembl transcript IDs: ENSMUST00000016553.5
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTTCTGGAGAAGATTTTGGAGTGTGGCAAGCACAGAGTCGAGTTGTaGACATTACTAAAGTTCAGCCACTGGCCCTTAGCTGTCTGGTCC | + |
|
Preference number: 1 (lower is better) Translates to: VLEKILECGKHRVEL*TLLKFSHWPLAVWS Trigger: GGACCAGACAGCTAAGGGCCAGTGGCTGAACTTTAGTAATGTTCACAACTCGACTCTGTGCTTGCCACACTCCAAAATCTTCTCCAGAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| 3UTR TCA 90 bp | GAGGCAGGAGACCAAGAGTTCAGAGTCATCCTTGGCTACAAAGCCTaGGGTCAACCTGGGCTAATTGAAACCATACATCAAACAGTAACT | + |
|
Preference number: 1 (lower is better) Translates to: EAGDQEFRVILGYKA*GQPGLIETIHQTVT Trigger: AGTTACTGTTTGATGTATGGTTTCAATTAGCCCAGGTTGACCTCAGGCTTTGTAGCCAAGGATGACTCTGAACTCTTGGTCTCCTGCCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| 3UTR TCA 90 bp | ACCCATAGATCTCTTCTACTGTCAGATGACCTCACTGCTAAACTCTaGACATCCCATCATGCTCATGATTGCAATGAAGCAGGGGTGGGT | + |
|
Preference number: 1 (lower is better) Translates to: THRSLLLSDDLTAKL*TSHHAHDCNEAGVG Trigger: ACCCACCCCTGCTTCATTGCAATCATGAGCATGATGGGATGTTCAGAGTTTAGCAGTGAGGTCATCTGACAGTAGAAGAGATCTATGGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| 3UTR CCA 90 bp | AACTCTGAACATCCCATCATGCTCATGATTGCAATGAAGCAGGGGTaGGTTACCACCCTTCCTTATTTCTGTCTTCACACTGGATCATCA | + |
|
Preference number: 1 (lower is better) Translates to: NSEHPIMLMIAMKQG*VTTLPYFCLHTGSS Trigger: TGATGATCCAGTGTGAAGACAGAAATAAGGAAGGGTGGTAACCCACCCCTGCTTCATTGCAATCATGAGCATGATGGGATGTTCAGAGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| 3UTR GCA 90 bp | CCCATCTGTAACACATTCAAAACAAGATATGAAATTCTCAAGTTCTaGTGGGATAGTGGCAGACACTGTATGGGGCTAATAATCATAGTC | + |
|
Preference number: 1 (lower is better) Translates to: PICNTFKTRYEILKF*WDSGRHCMGLIIIV Trigger: GACTATGATTATTAGCCCCATACAGTGTCTGCCACTATCCCAGCAGAACTTGAGAATTTCATATCTTGTTTTGAATGTGTTACAGATGGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| 3UTR GCA 90 bp | CTGGATCATCATGTATTCCTAACTTCCCAATGGGACTCCTATGCCTaGTCACACAATTTTAAAATACCAAAGACAACTTTACAGTACACT | + |
|
Preference number: 1 (lower is better) Translates to: LDHHVFLTSQWDSYA*SHNFKIPKTTLQYT Trigger: AGTGTACTGTAAAGTTGTCTTTGGTATTTTAAAATTGTGTGAGCAGGCATAGGAGTCCCATTGGGAAGTTAGGAATACATGATGATCCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| 3UTR CCA 90 bp | ATCTGTAACACATTCAAAACAAGATATGAAATTCTCAAGTTCTGCTaGGATAGTGGCAGACACTGTATGGGGCTAATAATCATAGTCACA | + |
|
Preference number: 1 (lower is better) Translates to: ICNTFKTRYEILKFC*DSGRHCMGLIIIVT Trigger: TGTGACTATGATTATTAGCCCCATACAGTGTCTGCCACTATCCCAGCAGAACTTGAGAATTTCATATCTTGTTTTGAATGTGTTACAGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| 3UTR-3UTR GCA 90 bp | ACCTCTAATCCTAGCACCTGGCAGGCTGAGGCAGGGGGAACTCTGGGAGTTCTAATTCCAGAGTGGCTGTaGACAGCAACACCGTCAGTT | + |
|
Preference number: 2 (lower is better) Translates to: TSNPSTWQAEAGGTLGVLIPEWL*TATPSV Trigger: AACTGACGGTGTTGCTGTGCACAGCCACTCTGGAAT...TAGAACTCCCAGAGTTCCCCCTGCCTCAGCCTGCCAGGTGCTAGGATTAGAGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| 3UTR-3UTR CCA 90 bp | GGCTCCACTACCCATAGATCTCTTCTACTGTCAGATGACCTCACTGCTAAACTCTCAGCACTTGGAAGGTaGAGGCAGGAGACCAAGAGT | + |
|
Preference number: 2 (lower is better) Translates to: GSTTHRSLLLSDDLTAKLSALGR*RQETKS Trigger: ACTCTTGGTCTCCTGCCTCCACCTTCCAAGTGCTGA...GAGTTTAGCAGTGAGGTCATCTGACAGTAGAAGAGATCTATGGGTAGTGGAGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| 3UTR-3UTR CCA 90 bp | TGTCTTCACACTGGATCATCATGTATTCCTAACTTCCCAATGGGACTCCTATGCTTTGGCTGGGCCTGGTaGCACACACCTCGAATTTCA | + |
|
Preference number: 2 (lower is better) Translates to: CLHTGSSCIPNFPMGLLCFGWAW*HTPRIS Trigger: TGAAATTCGAGGTGTGTGCCACCAGGCCCAGCCAAA...GCATAGGAGTCCCATTGGGAAGTTAGGAATACATGATGATCCAGTGTGAAGACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| 3UTR-3UTR GCA 90 bp | GGCTCCACTACCCATAGATCTCTTCTACTGTCAGATGACCTCACTGCTAAACTCACCTTCTCGTTCATCTaGCACTTTCTCTCTATGCCA | + |
|
Preference number: 2 (lower is better) Translates to: GSTTHRSLLLSDDLTAKLTFSFI*HFLSMP Trigger: TGGCATAGAGAGAAAGTGGCAGATGAACGAGAAGGT...GAGTTTAGCAGTGAGGTCATCTGACAGTAGAAGAGATCTATGGGTAGTGGAGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| 3UTR-3UTR CCA 90 bp | ACAACTTTACAGTACACTTCAAATGACAAAGACGTACAAGGGACACAGAACACTAGTAGCCTTTTTGGCTaGGCCTGGTGGCACACACCT | + |
|
Preference number: 2 (lower is better) Translates to: TTLQYTSNDKDVQGTQNTSSLFG*AWWHTP Trigger: AGGTGTGTGCCACCAGGCCCAGCCAAAAAGGCTACT...AGTGTTCTGTGTCCCTTGTACGTCTTTGTCATTTGAAGTGTACTGTAAAGTTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| 3UTR-3UTR CCA 90 bp | ACAACTTTACAGTACACTTCAAATGACAAAGACGTACAAGGGACACAGAACACTCTTTTTGGCTGGGCCTaGTGGCACACACCTCGAATT | + |
|
Preference number: 2 (lower is better) Translates to: TTLQYTSNDKDVQGTQNTLFGWA*WHTPRI Trigger: AATTCGAGGTGTGTGCCACCAGGCCCAGCCAAAAAG...AGTGTTCTGTGTCCCTTGTACGTCTTTGTCATTTGAAGTGTACTGTAAAGTTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| 3UTR-3UTR GCA 90 bp | AATGACAAAGACGTACAAGGGACACAGAACACTTGTAACAATTCATGTGGTAGGGCCACTTTCTCTCTATaGCACCTTCCGAACATAGCA | + |
|
Preference number: 2 (lower is better) Translates to: NDKDVQGTQNTCNNSCGRATFSL*HLPNIA Trigger: TGCTATGTTCGGAAGGTGGCATAGAGAGAAAGTGGC...CCTACCACATGAATTGTTACAAGTGTTCTGTGTCCCTTGTACGTCTTTGTCATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| 3UTR-3UTR CCA 90 bp | AATGACAAAGACGTACAAGGGACACAGAACACTTGTAACAATTCATGTGGTAGGGTTCAGAGTCATCCTTaGCTACAAAGCCTGAGGTCA | + |
|
Preference number: 2 (lower is better) Translates to: NDKDVQGTQNTCNNSCGRVQSHP*LQSLRS Trigger: TGACCTCAGGCTTTGTAGCCAAGGATGACTCTGAAC...CCTACCACATGAATTGTTACAAGTGTTCTGTGTCCCTTGTACGTCTTTGTCATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| 3UTR CCA 72 bp | TGGTGGCACACACCTCGAATTTCAGCACTTGGAAGGTaGAGGCAGGAGACCAAGAGTTCAGAGTCATCCTTG | + |
|
Preference number: 3 (lower is better) Translates to: WWHTPRISALGR*RQETKSSESSL Trigger: CAAGGATGACTCTGAACTCTTGGTCTCCTGCCTCCACCTTCCAAGTGCTGAAATTCGAGGTGTGTGCCACCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| 3UTR-3UTR CAA 90 bp | GGCTCCACTACCCATAGATCTCTTCTACTGTCAGATGACCTCACTGCTAAACTCAGCACAGTAGCCTTTTaGGCTGGGCCTGGTGGCACA | + |
|
Preference number: 3 (lower is better) Translates to: GSTTHRSLLLSDDLTAKLSTVAF*AGPGGT Trigger: TGTGCCACCAGGCCCAGCCAAAAAGGCTACTGTGCT...GAGTTTAGCAGTGAGGTCATCTGACAGTAGAAGAGATCTATGGGTAGTGGAGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| 3UTR-3UTR CAA 90 bp | TTCTGCTGGGATAGTGGCAGACACTGTATGGGGCTAATAATCATAGTCACACCACTCGAATTTCAGCACTaGGAAGGTGGAGGCAGGAGA | + |
|
Preference number: 3 (lower is better) Translates to: FCWDSGRHCMGLIIIVTPLEFQH*EGGGRR Trigger: TCTCCTGCCTCCACCTTCCAAGTGCTGAAATTCGAG...TGGTGTGACTATGATTATTAGCCCCATACAGTGTCTGCCACTATCCCAGCAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| 3UTR-3UTR CAA 90 bp | GGCTCCACTACCCATAGATCTCTTCTACTGTCAGATGACCTCACTGCTAAACTCGCATTTGGAACTTTTTaGCACTGCTGGGGATGTAGC | + |
|
Preference number: 3 (lower is better) Translates to: GSTTHRSLLLSDDLTAKLAFGTF*HCWGCS Trigger: GCTACATCCCCAGCAGTGCAAAAAAGTTCCAAATGC...GAGTTTAGCAGTGAGGTCATCTGACAGTAGAAGAGATCTATGGGTAGTGGAGCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| 3UTR TCA 72 bp | AAGATTTTGGAGTGTGGCAAGCACAGAGTCGAGTTGTaGACATTACTAAAGTTCAGCCACTGGCCCTTAGCT | + |
|
Preference number: 3 (lower is better) Translates to: KILECGKHRVEL*TLLKFSHWPLA Trigger: AGCTAAGGGCCAGTGGCTGAACTTTAGTAATGTTCACAACTCGACTCTGTGCTTGCCACACTCCAAAATCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| 3UTR TCA 72 bp | TCTCTTCTACTGTCAGATGACCTCACTGCTAAACTCTaGACATCCCATCATGCTCATGATTGCAATGAAGCA | + |
|
Preference number: 3 (lower is better) Translates to: SLLLSDDLTAKL*TSHHAHDCNEA Trigger: TGCTTCATTGCAATCATGAGCATGATGGGATGTTCAGAGTTTAGCAGTGAGGTCATCTGACAGTAGAAGAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| 3UTR CCA 72 bp | TCTGCAATAAGTTGTTTTCTGTTCTGGAGAAGATTTTaGAGTGTGGCAAGCACAGAGTCGAGTTGTGAACAT | + |
|
Preference number: 3 (lower is better) Translates to: SAISCFLFWRRF*SVASTESSCEH Trigger: ATGTTCACAACTCGACTCTGTGCTTGCCACACTCCAAAATCTTCTCCAGAACAGAAAACAACTTATTGCAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| 3UTR-3UTR CAA 90 bp | AATGACAAAGACGTACAAGGGACACAGAACACTTGTAACAATTCATGTGGTAGGTGCTTAGTTCAGCAGTaGTGGGTTAGAAACACATTT | + |
|
Preference number: 3 (lower is better) Translates to: NDKDVQGTQNTCNNSCGRCLVQQ*WVRNTF Trigger: AAATGTGTTTCTAACCCACAACTGCTGAACTAAGCA...CCTACCACATGAATTGTTACAAGTGTTCTGTGTCCCTTGTACGTCTTTGTCATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| 3UTR GCA 72 bp | CAAGTTCAAAGATCACAGATTTTACTACATGCTAACTaGTGCTTAGTTCAGCAGTTGTGGGTTAGAAACACA | + |
|
Preference number: 3 (lower is better) Translates to: QVQRSQILLHAN*CLVQQLWVRNT Trigger: TGTGTTTCTAACCCACAACTGCTGAACTAAGCAGCAGTTAGCATGTAGTAAAATCTGTGATCTTTGAACTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| 3UTR CAA 72 bp | GCTGGGCCTGGTGGCACACACCTCGAATTTCAGCACTaGGAAGGTGGAGGCAGGAGACCAAGAGTTCAGAGT | + |
|
Preference number: 4 (lower is better) Translates to: AGPGGTHLEFQH*EGGGRRPRVQS Trigger: ACTCTGAACTCTTGGTCTCCTGCCTCCACCTTCCAAGTGCTGAAATTCGAGGTGTGTGCCACCAGGCCCAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| CDS-3UTR TCA 90 bp | ACCTCTAATCCTAGCACCTGGCAGGCTGAGGCAGGGGGAACTCTGGGAGTTCTATGGTTCTTCTGCCTTTaGTCGATCCTTCCAAGGATT | + |
|
Preference number: 4 (lower is better) Translates to: TSNPSTWQAEAGGTLGVLWFFCL*SILPRI Trigger: AATCCTTGGAAGGATCGATCAAAGGCAGAAGAACCA...TAGAACTCCCAGAGTTCCCCCTGCCTCAGCCTGCCAGGTGCTAGGATTAGAGGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| CDS-3UTR GCA 90 bp | CATGATTGCAATGAAGCAGGGGTGGGTTACCACCCTTCCTTATTTCTGTCTTCAGCCTCCATTCGGCGATaGCTGCTACCACTCATTACG | + |
|
Preference number: 4 (lower is better) Translates to: HDCNEAGVGYHPSLFLSSASIRR*LLPLIT Trigger: CGTAATGAGTGGTAGCAGGCATCGCCGAATGGAGGC...TGAAGACAGAAATAAGGAAGGGTGGTAACCCACCCCTGCTTCATTGCAATCATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| CDS-3UTR CCA 90 bp | GCACACACCTCGAATTTCAGCACTTGGAAGGTGGAGGCAGGAGACCAAGAGTTCTGGTTCAGGATTCTTTaGGGAAAGTCCCCAAACTTC | + |
|
Preference number: 4 (lower is better) Translates to: AHTSNFSTWKVEAGDQEFWFRIL*GKSPNF Trigger: GAAGTTTGGGGACTTTCCCCAAAGAATCCTGAACCA...GAACTCTTGGTCTCCTGCCTCCACCTTCCAAGTGCTGAAATTCGAGGTGTGTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| CDS-3UTR CCA 90 bp | TTCTGCTGGGATAGTGGCAGACACTGTATGGGGCTAATAATCATAGTCACACCAGGGAGGCAAGAGTTTTaGGAGCCTCTGGGCCAATCA | + |
|
Preference number: 4 (lower is better) Translates to: FCWDSGRHCMGLIIIVTPGRQEF*EPLGQS Trigger: TGATTGGCCCAGAGGCTCCCAAAACTCTTGCCTCCC...TGGTGTGACTATGATTATTAGCCCCATACAGTGTCTGCCACTATCCCAGCAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| CDS-3UTR CCA 90 bp | GCACACACCTCGAATTTCAGCACTTGGAAGGTGGAGGCAGGAGACCAAGAGTTCAAAGGCTTATCATCTTaGGAGGCAAGAGTTTTGGGA | + |
|
Preference number: 4 (lower is better) Translates to: AHTSNFSTWKVEAGDQEFKGLSS*EARVLG Trigger: TCCCAAAACTCTTGCCTCCCAAGATGATAAGCCTTT...GAACTCTTGGTCTCCTGCCTCCACCTTCCAAGTGCTGAAATTCGAGGTGTGTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| CDS-3UTR TCA 90 bp | AATGACAAAGACGTACAAGGGACACAGAACACTTGTAACAATTCATGTGGTAGGAAGCCACTCAGCGAATaGCTGAGGCCATTCCGGTCG | + |
|
Preference number: 4 (lower is better) Translates to: NDKDVQGTQNTCNNSCGRKPLSE*LRPFRS Trigger: CGACCGGAATGGCCTCAGTCATTCGCTGAGTGGCTT...CCTACCACATGAATTGTTACAAGTGTTCTGTGTCCCTTGTACGTCTTTGTCATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| CDS-3UTR TCA 90 bp | CGTTCATCTGCCACTTTCTCTCTATGCCACCTTCCGAACATAGCAGGACTTTGGACCGGAACATTCAAATaGTGCGATCTCTTCACTTGT | + |
|
Preference number: 4 (lower is better) Translates to: RSSATFSLCHLPNIAGLWTGTFK*CDLFTC Trigger: ACAAGTGAAGAGATCGCATCATTTGAATGTTCCGGT...CCAAAGTCCTGCTATGTTCGGAAGGTGGCATAGAGAGAAAGTGGCAGATGAACG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| CDS-3UTR CCA 90 bp | TGTCTTCACACTGGATCATCATGTATTCCTAACTTCCCAATGGGACTCCTATGCCCATCTCACGAAAGCTaGCCAGAATCTTGTTCTCCC | + |
|
Preference number: 4 (lower is better) Translates to: CLHTGSSCIPNFPMGLLCPSHES*PESCSP Trigger: GGGAGAACAAGATTCTGGCCAGCTTTCGTGAGATGG...GCATAGGAGTCCCATTGGGAAGTTAGGAATACATGATGATCCAGTGTGAAGACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| CDS-3UTR GCA 90 bp | TGTCTTCACACTGGATCATCATGTATTCCTAACTTCCCAATGGGACTCCTATGCTCACTTAATCTCTTCTaGCGGAGACTCTCCTCCCTT | + |
|
Preference number: 4 (lower is better) Translates to: CLHTGSSCIPNFPMGLLCSLNLF*RRLSSL Trigger: AAGGGAGGAGAGTCTCCGGCAGAAGAGATTAAGTGA...GCATAGGAGTCCCATTGGGAAGTTAGGAATACATGATGATCCAGTGTGAAGACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| CDS-3UTR CCA 90 bp | CGTTCATCTGCCACTTTCTCTCTATGCCACCTTCCGAACATAGCAGGACTTTGGAGTAGTGCTTTTCTTTaGTTCTTCATCCTCTACTGG | + |
|
Preference number: 4 (lower is better) Translates to: RSSATFSLCHLPNIAGLWSSAFL*FFILYW Trigger: CCAGTAGAGGATGAAGAACCAAAGAAAAGCACTACT...CCAAAGTCCTGCTATGTTCGGAAGGTGGCATAGAGAGAAAGTGGCAGATGAACG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| CDS-3UTR CCA 90 bp | ACAACTTTACAGTACACTTCAAATGACAAAGACGTACAAGGGACACAGAACACTTGGTTTCGGGAGCTTTaGCTGAAGCCACTCAGCGAA | + |
|
Preference number: 4 (lower is better) Translates to: TTLQYTSNDKDVQGTQNTWFREL*LKPLSE Trigger: TTCGCTGAGTGGCTTCAGCCAAAGCTCCCGAAACCA...AGTGTTCTGTGTCCCTTGTACGTCTTTGTCATTTGAAGTGTACTGTAAAGTTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| CDS-3UTR TCA 90 bp | TGTCTTCACACTGGATCATCATGTATTCCTAACTTCCCAATGGGACTCCTATGCCTTTGCTCTTCTTTTTaGATCTTCATCGCTGGAGTC | + |
|
Preference number: 4 (lower is better) Translates to: CLHTGSSCIPNFPMGLLCLCSSF*IFIAGV Trigger: GACTCCAGCGATGAAGATTCAAAAAGAAGAGCAAAG...GCATAGGAGTCCCATTGGGAAGTTAGGAATACATGATGATCCAGTGTGAAGACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| CDS-3UTR TCA 90 bp | CATGATTGCAATGAAGCAGGGGTGGGTTACCACCCTTCCTTATTTCTGTCTTCACTTGGCTCTGTCTTTTaGATGACTAGATTTCCTTTT | + |
|
Preference number: 4 (lower is better) Translates to: HDCNEAGVGYHPSLFLSSLGSVF*MTRFPF Trigger: AAAAGGAAATCTAGTCATTCAAAAGACAGAGCCAAG...TGAAGACAGAAATAAGGAAGGGTGGTAACCCACCCCTGCTTCATTGCAATCATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| CDS-3UTR CCA 90 bp | TGTCTTCACACTGGATCATCATGTATTCCTAACTTCCCAATGGGACTCCTATGCTCTAGAAATTCTTCTTaGGACTCTTTAGAGCTCGAA | + |
|
Preference number: 4 (lower is better) Translates to: CLHTGSSCIPNFPMGLLCSRNSS*DSLELE Trigger: TTCGAGCTCTAAAGAGTCCCAAGAAGAATTTCTAGA...GCATAGGAGTCCCATTGGGAAGTTAGGAATACATGATGATCCAGTGTGAAGACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| CDS CCA 90 bp | CGTGGCCATAGTTCAAAGGCTTATCATCTTGGGAGGCAAGAGTTTTaGGAGCCTCTGGGCCAATCAAATCTGATGGTTCTTCTGCCTTTG | + |
|
Preference number: 5 (lower is better) Translates to: RGHSSKAYHLGRQEF*EPLGQSNLMVLLPL Trigger: CAAAGGCAGAAGAACCATCAGATTTGATTGGCCCAGAGGCTCCCAAAACTCTTGCCTCCCAAGATGATAAGCCTTTGAACTATGGCCACG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| CDS-3UTR CAA 90 bp | AATGACAAAGACGTACAAGGGACACAGAACACTTGTAACAATTCATGTGGTAGGTTGGTTTCGGGAGCTTaGGCTGAAGCCACTCAGCGA | + |
|
Preference number: 5 (lower is better) Translates to: NDKDVQGTQNTCNNSCGRLVSGA*AEATQR Trigger: TCGCTGAGTGGCTTCAGCCAAAGCTCCCGAAACCAA...CCTACCACATGAATTGTTACAAGTGTTCTGTGTCCCTTGTACGTCTTTGTCATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| CDS-3UTR CAA 90 bp | CGTTCATCTGCCACTTTCTCTCTATGCCACCTTCCGAACATAGCAGGACTTTGGTCTTTGCTCTTCTTTTaGAATCTTCATCGCTGGAGT | + |
|
Preference number: 5 (lower is better) Translates to: RSSATFSLCHLPNIAGLWSLLFF*NLHRWS Trigger: ACTCCAGCGATGAAGATTCAAAAAGAAGAGCAAAGA...CCAAAGTCCTGCTATGTTCGGAAGGTGGCATAGAGAGAAAGTGGCAGATGAACG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| CDS-3UTR CAA 90 bp | CATGATTGCAATGAAGCAGGGGTGGGTTACCACCCTTCCTTATTTCTGTCTTCAATGGTTCTTCTGCCTTaGATCGATCCTTCCAAGGAT | + |
|
Preference number: 5 (lower is better) Translates to: HDCNEAGVGYHPSLFLSSMVLLP*IDPSKD Trigger: ATCCTTGGAAGGATCGATCAAAGGCAGAAGAACCAT...TGAAGACAGAAATAAGGAAGGGTGGTAACCCACCCCTGCTTCATTGCAATCATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| CDS-3UTR CAA 90 bp | TGTCTTCACACTGGATCATCATGTATTCCTAACTTCCCAATGGGACTCCTATGCAAGCTGGCCAGAATCTaGTTCTCCCTCTTTCGTCTT | + |
|
Preference number: 5 (lower is better) Translates to: CLHTGSSCIPNFPMGLLCKLARI*FSLFRL Trigger: AAGACGAAAGAGGGAGAACAAGATTCTGGCCAGCTT...GCATAGGAGTCCCATTGGGAAGTTAGGAATACATGATGATCCAGTGTGAAGACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| CDS-3UTR CAA 90 bp | AATGACAAAGACGTACAAGGGACACAGAACACTTGTAACAATTCATGTGGTAGGCTGGTTCAGGATTCTTaGGGGAAAGTCCCCAAACTT | + |
|
Preference number: 5 (lower is better) Translates to: NDKDVQGTQNTCNNSCGRLVQDS*GKVPKL Trigger: AAGTTTGGGGACTTTCCCCAAAGAATCCTGAACCAG...CCTACCACATGAATTGTTACAAGTGTTCTGTGTCCCTTGTACGTCTTTGTCATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| CDS-3UTR CAA 90 bp | ACAACTTTACAGTACACTTCAAATGACAAAGACGTACAAGGGACACAGAACACTTTGTCATCCTTCCCTTaGGTCTTTCTGTATACCATC | + |
|
Preference number: 5 (lower is better) Translates to: TTLQYTSNDKDVQGTQNTLSSFP*VFLYTI Trigger: GATGGTATACAGAAAGACCAAAGGGAAGGATGACAA...AGTGTTCTGTGTCCCTTGTACGTCTTTGTCATTTGAAGTGTACTGTAAAGTTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| CDS CAA 72 bp | GAGCGAGACCGGCGACACCGCGGGGAGCGGGAAGATTaGATGGATTTGGGGCTCCGCGATGGACTGCGACGC | + |
|
Preference number: 6 (lower is better) Translates to: ERDRRHRGERED*MDLGLRDGLRR Trigger: GCGTCGCAGTCCATCGCGGAGCCCCAAATCCATCAAATCTTCCCGCTCCCCGCGGTGTCGCCGGTCTCGCTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| CDS TCA 72 bp | AGCGAGACCGGCGACACCGCGGGGAGCGGGAAGATTTaGTGGATTTGGGGCTCCGCGATGGACTGCGACGCT | + |
|
Preference number: 6 (lower is better) Translates to: SETGDTAGSGKI*WIWGSAMDCDA Trigger: AGCGTCGCAGTCCATCGCGGAGCCCCAAATCCATCAAATCTTCCCGCTCCCCGCGGTGTCGCCGGTCTCGCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| CDS CCA 72 bp | GGAGCGGGAAGATTTGATGGATTTGGGGCTCCGCGATaGACTGCGACGCTTCGCCCCGGAGGCCTCCCGTTC | + |
|
Preference number: 6 (lower is better) Translates to: GAGRFDGFGAPR*TATLRPGGLPF Trigger: GAACGGGAGGCCTCCGGGGCGAAGCGTCGCAGTCCATCGCGGAGCCCCAAATCCATCAAATCTTCCCGCTCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| CDS CAA 72 bp | CTGGTGTATGTTCATCAGAGTCTGGTTCAGGATTCTTaGGGGAAAGTCCCCAAACTTCAGGAGCTCCCAATT | + |
|
Preference number: 6 (lower is better) Translates to: LVYVHQSLVQDS*GKVPKLQELPI Trigger: AATTGGGAGCTCCTGAAGTTTGGGGACTTTCCCCAAAGAATCCTGAACCAGACTCTGATGAACATACACCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||
| CDS CCA 72 bp | GATCGATCCTTCCAAGGATTCTCTAGAAATTCTTCTTaGGACTCTTTAGAGCTCGAATCACTGGACTCTTTT | + |
|
Preference number: 6 (lower is better) Translates to: DRSFQGFSRNSS*DSLELESLDSF Trigger: AAAAGAGTCCAGTGATTCGAGCTCTAAAGAGTCCCAAGAAGAATTTCTAGAGAATCCTTGGAAGGATCGATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016553.5 |
||