Pregenerated sensors for NKAIN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078532Ensembl transcript IDs: ENSMUST00000105993.4, ENSMUST00000180884.8
Found 36 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCAGGGGCGCGCCTGCCTATCGTGATCCGCGCCTCCGGACAGCACTaGTTCAGGCTCCAGTGGTCCAGGGAAAACTGTACGCGGGTGGGA | + |
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Preference number: 1 (lower is better) Translates to: PGARLPIVIRASGQH*FRLQWSRENCTRVG Trigger: TCCCACCCGCGTACAGTTTTCCCTGGACCACTGGAGCCTGAAGCAGTGCTGTCCGGAGGCGCGGATCACGATAGGCAGGCGCGCCCCTGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105993.4 ENSMUST00000180884.8 |
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| 3UTR CCA 90 bp | AGCACTGCTTCAGGCTCCAGTGGTCCAGGGAAAACTGTACGCGGGTaGGACAGAAGCTATCCGGACGTGTACAGAGGCTGCAGCTGTAAA | + |
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Preference number: 1 (lower is better) Translates to: STASGSSGPGKTVRG*DRSYPDVYRGCSCK Trigger: TTTACAGCTGCAGCCTCTGTACACGTCCGGATAGCTTCTGTCCCACCCGCGTACAGTTTTCCCTGGACCACTGGAGCCTGAAGCAGTGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180884.8 |
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| 3UTR-3UTR GCA 90 bp | CCCGCCCCGTCCTGCCCCAACCCTGAAGTCCTGCTAGAGCTAGGGTCAGGTCCAGGCTGCAGCTGTAAATaGGACGTCTTCTGCGGCGCC | + |
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Preference number: 2 (lower is better) Translates to: PAPSCPNPEVLLELGSGPGCSCK*DVFCGA Trigger: GGCGCCGCAGAAGACGTCGCATTTACAGCTGCAGCC...TGGACCTGACCCTAGCTCTAGCAGGACTTCAGGGTTGGGGCAGGACGGGGCGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180884.8 |
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| 3UTR-3UTR GCA 90 bp | CTGCAGATCCAGGAGGCTGCACAAGCTGCAGTTAGCCTAAGCGCCACCAGGGGCGCCTCCGGACAGCACTaGTTCAGGCTCCAGTGGTCC | + |
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Preference number: 2 (lower is better) Translates to: LQIQEAAQAAVSLSATRGASGQH*FRLQWS Trigger: GGACCACTGGAGCCTGAAGCAGTGCTGTCCGGAGGC...GCCCCTGGTGGCGCTTAGGCTAACTGCAGCTTGTGCAGCCTCCTGGATCTGCAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105993.4 ENSMUST00000180884.8 |
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| 3UTR-3UTR GCA 90 bp | CGCATTTTCTCCAGGGGCTGCAGATCCAGGAGGCTGCACAAGCTGCAGTTAGCCGCCTCCGGACAGCACTaGTTCAGGCTCCAGTGGTCC | + |
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Preference number: 2 (lower is better) Translates to: RIFSRGCRSRRLHKLQLAASGQH*FRLQWS Trigger: GGACCACTGGAGCCTGAAGCAGTGCTGTCCGGAGGC...GGCTAACTGCAGCTTGTGCAGCCTCCTGGATCTGCAGCCCCTGGAGAAAATGCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105993.4 ENSMUST00000180884.8 |
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| 3UTR-3UTR CCA 90 bp | GGGCTGCAGATCCAGGAGGCTGCACAAGCTGCAGTTAGCCTAAGCGCCACCAGGTGCTTCAGGCTCCAGTaGTCCAGGGAAAACTGTACG | + |
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Preference number: 2 (lower is better) Translates to: GLQIQEAAQAAVSLSATRCFRLQ*SRENCT Trigger: CGTACAGTTTTCCCTGGACCACTGGAGCCTGAAGCA...CCTGGTGGCGCTTAGGCTAACTGCAGCTTGTGCAGCCTCCTGGATCTGCAGCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105993.4 ENSMUST00000180884.8 |
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| 3UTR-3UTR TCA 90 bp | CCCGCCCCGTCCTGCCCCAACCCTGAAGTCCTGCTAGAGCTAGGGTCAGGTCCATCCAAGTTCAAGTCTTaGGAGTCCGCATTTTCTCCA | + |
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Preference number: 2 (lower is better) Translates to: PAPSCPNPEVLLELGSGPSKFKS*ESAFSP Trigger: TGGAGAAAATGCGGACTCTCAAGACTTGAACTTGGA...TGGACCTGACCCTAGCTCTAGCAGGACTTCAGGGTTGGGGCAGGACGGGGCGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000105993.4 ENSMUST00000180884.8 |
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| 3UTR-3UTR CCA 90 bp | CCGCATTTTCTCCAGGGGCTGCAGATCCAGGAGGCTGCACAAGCTGCAGTTAGCTGCTTCAGGCTCCAGTaGTCCAGGGAAAACTGTACG | + |
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Preference number: 2 (lower is better) Translates to: PHFLQGLQIQEAAQAAVSCFRLQ*SRENCT Trigger: CGTACAGTTTTCCCTGGACCACTGGAGCCTGAAGCA...GCTAACTGCAGCTTGTGCAGCCTCCTGGATCTGCAGCCCCTGGAGAAAATGCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000105993.4 ENSMUST00000180884.8 |
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| 3UTR-3UTR CCA 90 bp | TCACATAACAGGCAAACACGAAGCCGAACAGAGCTAGGAAGATCTGCAGGGCACACCGAGATGACGTGGTaGTCCTCCAGGGCCAGGCGA | + |
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Preference number: 2 (lower is better) Translates to: SHNRQTRSRTELGRSAGHTEMTW*SSRARR Trigger: TCGCCTGGCCCTGGAGGACCACCACGTCATCTCGGT...GTGCCCTGCAGATCTTCCTAGCTCTGTTCGGCTTCGTGTTTGCCTGTTATGTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180884.8 |
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| 3UTR-3UTR GCA 90 bp | GGGACAGAAGCTATCCGGACGTGTACAGAGGCTGCAGCTGTAAATGCGACGTCTATTTTCTCCAGGGGCTaGAGATCCAGGAGGCTGCAC | + |
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Preference number: 2 (lower is better) Translates to: GTEAIRTCTEAAAVNATSIFSRG*RSRRLH Trigger: GTGCAGCCTCCTGGATCTGCAGCCCCTGGAGAAAAT...AGACGTCGCATTTACAGCTGCAGCCTCTGTACACGTCCGGATAGCTTCTGTCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180884.8 |
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| 3UTR-3UTR TCA 90 bp | CATTTTCTCCAGGGGCTGCAGATCCAGGAGGCTGCACAAGCTGCAGTTAGCCTATCTGCAGGGCACTACTaGGGGCTTCAATGTAAGGAT | + |
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Preference number: 2 (lower is better) Translates to: HFLQGLQIQEAAQAAVSLSAGHY*GLQCKD Trigger: ATCCTTACATTGAAGCCCTCAGTAGTGCCCTGCAGA...TAGGCTAACTGCAGCTTGTGCAGCCTCCTGGATCTGCAGCCCCTGGAGAAAATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000180884.8 |
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| 3UTR-3UTR TCA 90 bp | CATTTTCTCCAGGGGCTGCAGATCCAGGAGGCTGCACAAGCTGCAGTTAGCCTAAGTCAAAGCCACCGATaGAGTCAAAGCTGTCCTCCT | + |
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Preference number: 2 (lower is better) Translates to: HFLQGLQIQEAAQAAVSLSQSHR*SQSCPP Trigger: AGGAGGACAGCTTTGACTTCATCGGTGGCTTTGACT...TAGGCTAACTGCAGCTTGTGCAGCCTCCTGGATCTGCAGCCCCTGGAGAAAATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180884.8 |
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| 3UTR-3UTR GCA 90 bp | CATTTTCTCCAGGGGCTGCAGATCCAGGAGGCTGCACAAGCTGCAGTTAGCCTACTTCCAGGAATACTTTaGTCACATAACAGGCAAACA | + |
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Preference number: 2 (lower is better) Translates to: HFLQGLQIQEAAQAAVSLLPGIL*SHNRQT Trigger: TGTTTGCCTGTTATGTGAGCAAAGTATTCCTGGAAG...TAGGCTAACTGCAGCTTGTGCAGCCTCCTGGATCTGCAGCCCCTGGAGAAAATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180884.8 |
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| 3UTR GCA 72 bp | CGCCTGCCTATCGTGATCCGCGCCTCCGGACAGCACTaGTTCAGGCTCCAGTGGTCCAGGGAAAACTGTACG | + |
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Preference number: 3 (lower is better) Translates to: RLPIVIRASGQH*FRLQWSRENCT Trigger: CGTACAGTTTTCCCTGGACCACTGGAGCCTGAAGCAGTGCTGTCCGGAGGCGCGGATCACGATAGGCAGGCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105993.4 ENSMUST00000180884.8 |
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| 3UTR TCA 72 bp | CCTGCTAGAGCTAGGGTCAGGTCCAAGTTCAAGTCTTaGGAGTCCGCATTTTCTCCAGGGGCTGCAGATCCA | + |
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Preference number: 3 (lower is better) Translates to: PARARVRSKFKS*ESAFSPGAADP Trigger: TGGATCTGCAGCCCCTGGAGAAAATGCGGACTCTCAAGACTTGAACTTGGACCTGACCCTAGCTCTAGCAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105993.4 ENSMUST00000180884.8 |
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| 3UTR TCA 72 bp | AGCCGAACAGAGCTAGGAAGATCTGCAGGGCACTACTaGGGGCTTCAATGTAAGGATAATCAAGCAGGCAGC | + |
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Preference number: 3 (lower is better) Translates to: SRTELGRSAGHY*GLQCKDNQAGS Trigger: GCTGCCTGCTTGATTATCCTTACATTGAAGCCCTCAGTAGTGCCCTGCAGATCTTCCTAGCTCTGTTCGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180884.8 |
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| CDS-3UTR CCA 90 bp | CGCATTTTCTCCAGGGGCTGCAGATCCAGGAGGCTGCACAAGCTGCAGTTAGCCATGAAGTCCCGGTCCTaGGGGGCAGAGGGGCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: RIFSRGCRSRRLHKLQLAMKSRS*GAEGPG Trigger: CCCAGGCCCCTCTGCCCCCCAGGACCGGGACTTCAT...GGCTAACTGCAGCTTGTGCAGCCTCCTGGATCTGCAGCCCCTGGAGAAAATGCG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000180884.8 |
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| CDS-3UTR GCA 90 bp | CCGCATTTTCTCCAGGGGCTGCAGATCCAGGAGGCTGCACAAGCTGCAGTTAGCAGAAGGCGACCAGCGTaGAGCGGCCGCTGCACTTGC | + |
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Preference number: 4 (lower is better) Translates to: PHFLQGLQIQEAAQAAVSRRRPA*SGRCTC Trigger: GCAAGTGCAGCGGCCGCTGCACGCTGGTCGCCTTCT...GCTAACTGCAGCTTGTGCAGCCTCCTGGATCTGCAGCCCCTGGAGAAAATGCGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105993.4 ENSMUST00000180884.8 |
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| CDS-3UTR GCA 90 bp | CATTTTCTCCAGGGGCTGCAGATCCAGGAGGCTGCACAAGCTGCAGTTAGCCTAAGAAGGCGACCAGCGTaGAGCGGCCGCTGCACTTGC | + |
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Preference number: 4 (lower is better) Translates to: HFLQGLQIQEAAQAAVSLRRRPA*SGRCTC Trigger: GCAAGTGCAGCGGCCGCTGCACGCTGGTCGCCTTCT...TAGGCTAACTGCAGCTTGTGCAGCCTCCTGGATCTGCAGCCCCTGGAGAAAATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105993.4 ENSMUST00000180884.8 |
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| CDS-3UTR CCA 90 bp | CGCGGGTGGGACAGAAGCTATCCGGACGTGTACAGAGGCTGCAGCTGTAAATGCTCGAAGATCTGCCGCTaGAGTGCAGCCACCAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: RGWDRSYPDVYRGCSCKCSKICR*SAATSC Trigger: GCAGCTGGTGGCTGCACTCCAGCGGCAGATCTTCGA...GCATTTACAGCTGCAGCCTCTGTACACGTCCGGATAGCTTCTGTCCCACCCGCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180884.8 |
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| CDS-3UTR CCA 90 bp | TTTCTCCAGGGGCTGCAGATCCAGGAGGCTGCACAAGCTGCAGTTAGCCTAAGCGTGACCGAGATGACGTaGTGGTCCTCCAGGGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: FLQGLQIQEAAQAAVSLSVTEMT*WSSRAR Trigger: CCTGGCCCTGGAGGACCACCACGTCATCTCGGTCAC...GCTTAGGCTAACTGCAGCTTGTGCAGCCTCCTGGATCTGCAGCCCCTGGAGAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105993.4 |
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| CDS-3UTR GCA 90 bp | TTTCTCCAGGGGCTGCAGATCCAGGAGGCTGCACAAGCTGCAGTTAGCCTAAGCGGCTGCAGCTGTAAATaGGACGTCTTCTGCGGCGCC | + |
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Preference number: 4 (lower is better) Translates to: FLQGLQIQEAAQAAVSLSGCSCK*DVFCGA Trigger: GGCGCCGCAGAAGACGTCGCATTTACAGCTGCAGCC...GCTTAGGCTAACTGCAGCTTGTGCAGCCTCCTGGATCTGCAGCCCCTGGAGAAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105993.4 |
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| CDS-3UTR CCA 90 bp | CATTTTCTCCAGGGGCTGCAGATCCAGGAGGCTGCACAAGCTGCAGTTAGCCTAACCGAGATGACGTGGTaGTCCTCCAGGGCCAGGCGA | + |
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Preference number: 4 (lower is better) Translates to: HFLQGLQIQEAAQAAVSLTEMTW*SSRARR Trigger: TCGCCTGGCCCTGGAGGACCACCACGTCATCTCGGT...TAGGCTAACTGCAGCTTGTGCAGCCTCCTGGATCTGCAGCCCCTGGAGAAAATG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105993.4 |
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| CDS-3UTR CCA 90 bp | GGGACAGAAGCTATCCGGACGTGTACAGAGGCTGCAGCTGTAAATGCGACGTCTGGGGGCAGAGGGGCCTaGGATAGCTGTCCAACTTCC | + |
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Preference number: 4 (lower is better) Translates to: GTEAIRTCTEAAAVNATSGGRGA*DSCPTS Trigger: GGAAGTTGGACAGCTATCCCAGGCCCCTCTGCCCCC...AGACGTCGCATTTACAGCTGCAGCCTCTGTACACGTCCGGATAGCTTCTGTCCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000180884.8 |
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| CDS-3UTR TCA 90 bp | GGGCTGCAGATCCAGGAGGCTGCACAAGCTGCAGTTAGCCTAAGCGCCACCAGGTCTGCAGGGCACTACTaGGGGCTTCAATGTAAGGAT | + |
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Preference number: 4 (lower is better) Translates to: GLQIQEAAQAAVSLSATRSAGHY*GLQCKD Trigger: ATCCTTACATTGAAGCCCTCAGTAGTGCCCTGCAGA...CCTGGTGGCGCTTAGGCTAACTGCAGCTTGTGCAGCCTCCTGGATCTGCAGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105993.4 |
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| CDS-3UTR TCA 90 bp | CTGCAGATCCAGGAGGCTGCACAAGCTGCAGTTAGCCTAAGCGCCACCAGGGGCAGTCAAAGCCACCGATaGAGTCAAAGCTGTCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: LQIQEAAQAAVSLSATRGSQSHR*SQSCPP Trigger: AGGAGGACAGCTTTGACTTCATCGGTGGCTTTGACT...GCCCCTGGTGGCGCTTAGGCTAACTGCAGCTTGTGCAGCCTCCTGGATCTGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105993.4 |
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| CDS-3UTR GCA 90 bp | CGCATTTTCTCCAGGGGCTGCAGATCCAGGAGGCTGCACAAGCTGCAGTTAGCCTACCGGGACCGATACTaGACGGTACCAAAGATGCCC | + |
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Preference number: 4 (lower is better) Translates to: RIFSRGCRSRRLHKLQLAYRDRY*TVPKMP Trigger: GGGCATCTTTGGTACCGTGCAGTATCGGTCCCGGTA...GGCTAACTGCAGCTTGTGCAGCCTCCTGGATCTGCAGCCCCTGGAGAAAATGCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105993.4 ENSMUST00000180884.8 |
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| CDS-3UTR GCA 90 bp | ATAATCAAGCAGGCAGCCAGTGACCGAGATGACGTGGTGGTCCTCCAGGGCCAGTACCGGGACCGATACTaGACGGTACCAAAGATGCCC | + |
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Preference number: 4 (lower is better) Translates to: IIKQAASDRDDVVVLQGQYRDRY*TVPKMP Trigger: GGGCATCTTTGGTACCGTGCAGTATCGGTCCCGGTA...CTGGCCCTGGAGGACCACCACGTCATCTCGGTCACTGGCTGCCTGCTTGATTAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000180884.8 |
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| CDS-3UTR CCA 90 bp | CATTTTCTCCAGGGGCTGCAGATCCAGGAGGCTGCACAAGCTGCAGTTAGCCTATCGAAGATCTGCCGCTaGAGTGCAGCCACCAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: HFLQGLQIQEAAQAAVSLSKICR*SAATSC Trigger: GCAGCTGGTGGCTGCACTCCAGCGGCAGATCTTCGA...TAGGCTAACTGCAGCTTGTGCAGCCTCCTGGATCTGCAGCCCCTGGAGAAAATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105993.4 ENSMUST00000180884.8 |
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| CDS-3UTR GCA 90 bp | CCGCATTTTCTCCAGGGGCTGCAGATCCAGGAGGCTGCACAAGCTGCAGTTAGCGAGTACAAGCCAGGCTaGATACAGGATGAGATACCG | + |
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Preference number: 4 (lower is better) Translates to: PHFLQGLQIQEAAQAAVSEYKPG*IQDEIP Trigger: CGGTATCTCATCCTGTATGCAGCCTGGCTTGTACTC...GCTAACTGCAGCTTGTGCAGCCTCCTGGATCTGCAGCCCCTGGAGAAAATGCGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000105993.4 ENSMUST00000180884.8 |
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| CDS-3UTR GCA 90 bp | TTTCTCCAGGGGCTGCAGATCCAGGAGGCTGCACAAGCTGCAGTTAGCCTAAGCATCCACCAGGAGCGATaGAGGGATGTGTTGAAGGTC | + |
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Preference number: 4 (lower is better) Translates to: FLQGLQIQEAAQAAVSLSIHQER*RDVLKV Trigger: GACCTTCAACACATCCCTGCATCGCTCCTGGTGGAT...GCTTAGGCTAACTGCAGCTTGTGCAGCCTCCTGGATCTGCAGCCCCTGGAGAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105993.4 |
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| CDS-3UTR GCA 90 bp | TTTCTCCAGGGGCTGCAGATCCAGGAGGCTGCACAAGCTGCAGTTAGCCTAAGCGACGTGTACAGAGGCTaGAGCTGTAAATGCGACGTC | + |
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Preference number: 4 (lower is better) Translates to: FLQGLQIQEAAQAAVSLSDVYRG*SCKCDV Trigger: GACGTCGCATTTACAGCTGCAGCCTCTGTACACGTC...GCTTAGGCTAACTGCAGCTTGTGCAGCCTCCTGGATCTGCAGCCCCTGGAGAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105993.4 |
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| CDS-3UTR GCA 90 bp | CGCATTTTCTCCAGGGGCTGCAGATCCAGGAGGCTGCACAAGCTGCAGTTAGCCCTTCCAGGAATACTTTaGTCACATAACAGGCAAACA | + |
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Preference number: 4 (lower is better) Translates to: RIFSRGCRSRRLHKLQLALPGIL*SHNRQT Trigger: TGTTTGCCTGTTATGTGAGCAAAGTATTCCTGGAAG...GGCTAACTGCAGCTTGTGCAGCCTCCTGGATCTGCAGCCCCTGGAGAAAATGCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105993.4 |
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| CDS-3UTR CAA 90 bp | TTTCTCCAGGGGCTGCAGATCCAGGAGGCTGCACAAGCTGCAGTTAGCCTAAGCCGATGCAGGGATGTGTaGAAGGTCATGATGAAGTCC | + |
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Preference number: 5 (lower is better) Translates to: FLQGLQIQEAAQAAVSLSRCRDV*KVMMKS Trigger: GGACTTCATCATGACCTTCAACACATCCCTGCATCG...GCTTAGGCTAACTGCAGCTTGTGCAGCCTCCTGGATCTGCAGCCCCTGGAGAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105993.4 |
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| CDS GCA 90 bp | AGTACAAGCCAGGCTGCATACAGGATGAGATACCGGGACCGATACTaGACGGTACCAAAGATGCCCAGGATGACAGCCATGATATGCAGG | + |
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Preference number: 5 (lower is better) Translates to: STSQAAYRMRYRDRY*TVPKMPRMTAMICR Trigger: CCTGCATATCATGGCTGTCATCCTGGGCATCTTTGGTACCGTGCAGTATCGGTCCCGGTATCTCATCCTGTATGCAGCCTGGCTTGTACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105993.4 ENSMUST00000180884.8 |
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| CDS GCA 72 bp | GAAGGCGTTCCAGCCAACCCAGAGTACAAGCCAGGCTaGATACAGGATGAGATACCGGGACCGATACTGCAC | + |
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Preference number: 6 (lower is better) Translates to: EGVPANPEYKPG*IQDEIPGPILH Trigger: GTGCAGTATCGGTCCCGGTATCTCATCCTGTATGCAGCCTGGCTTGTACTCTGGGTTGGCTGGAACGCCTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105993.4 ENSMUST00000180884.8 |
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