Pregenerated sensors for NIT2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022751Ensembl transcript IDs: ENSMUST00000023432.10, ENSMUST00000231423.2, ENSMUST00000231733.2, ENSMUST00000231934.2
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCAGCTTCTTCAGGTCTATGTCTGAGTACAGGATTGTTTCCTCCGTaGCAGCTTTGGTTAGGACCTGCCCCCAAGGATCCACAACAGTGC | + |
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Preference number: 1 (lower is better) Translates to: PASSGLCLSTGLFPP*QLWLGPAPKDPQQC Trigger: GCACTGTTGTGGATCCTTGGGGGCAGGTCCTAACCAAAGCTGGCACGGAGGAAACAATCCTGTACTCAGACATAGACCTGAAGAAGCTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000231934.2 |
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| 3UTR CAA 90 bp | TTCAGGTCTATGTCTGAGTACAGGATTGTTTCCTCCGTGCCAGCTTaGGTTAGGACCTGCCCCCAAGGATCCACAACAGTGCTGTGTCCC | + |
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Preference number: 2 (lower is better) Translates to: FRSMSEYRIVSSVPA*VRTCPQGSTTVLCP Trigger: GGGACACAGCACTGTTGTGGATCCTTGGGGGCAGGTCCTAACCAAAGCTGGCACGGAGGAAACAATCCTGTACTCAGACATAGACCTGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000231934.2 |
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| 3UTR-3UTR GCA 90 bp | TCAGCCAGCTTCTTCAGGTCTATGTCTGAGTACAGGATTGTTTCCTCCGTGCCAGCTTTGGTTAGGACCTaGCCCCTGAAGAAAATCCAG | + |
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Preference number: 2 (lower is better) Translates to: SASFFRSMSEYRIVSSVPALVRT*PLKKIQ Trigger: CTGGATTTTCTTCAGGGGGCAGGTCCTAACCAAAGC...TGGCACGGAGGAAACAATCCTGTACTCAGACATAGACCTGAAGAAGCTGGCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000231423.2 |
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| 3UTR CAA 90 bp | TTCAGGTCTATGTCTGAGTACAGGATTGTTTCCTCCGTGCCAGCTTaGGTTAGGACCTGCCCCCTGAAGAAAATCCAGAGAATGAATGGG | + |
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Preference number: 2 (lower is better) Translates to: FRSMSEYRIVSSVPA*VRTCPLKKIQRMNG Trigger: CCCATTCATTCTCTGGATTTTCTTCAGGGGGCAGGTCCTAACCAAAGCTGGCACGGAGGAAACAATCCTGTACTCAGACATAGACCTGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000231423.2 |
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| 3UTR-3UTR CCA 90 bp | CATCCTGTTGGTGACATTTTTGAAACAGATATCAAGGCTTCTTTGATTCCACTGCCTCCGTGCCAGCTTTaGTTAGGACCTGCCCCCAAG | + |
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Preference number: 2 (lower is better) Translates to: HPVGDIFETDIKASLIPLPPCQL*LGPAPK Trigger: CTTGGGGGCAGGTCCTAACCAAAGCTGGCACGGAGG...CAGTGGAATCAAAGAAGCCTTGATATCTGTTTCAAAAATGTCACCAACAGGATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000231934.2 |
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| 3UTR-3UTR GCA 90 bp | GATATCAAGGCTTCTTTGATTCCACTGTATAGAGGTCTGCTCGTTTCTGTTTTAAAGGATCCACAACAGTaGTGTGTCCCCAGGCCACAT | + |
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Preference number: 2 (lower is better) Translates to: DIKASLIPLYRGLLVSVLKDPQQ*CVPRPH Trigger: ATGTGGCCTGGGGACACAGCACTGTTGTGGATCCTT...TAAAACAGAAACGAGCAGACCTCTATACAGTGGAATCAAAGAAGCCTTGATATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000231934.2 |
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| 3UTR-3UTR GCA 90 bp | GAGCATCATCCTGTTGGTGACATTTTTGAAACAGATATCAAGGCTTCTTTGATTGCTTTGGTTAGGACCTaGCCCCAAGGATCCACAACA | + |
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Preference number: 2 (lower is better) Translates to: EHHPVGDIFETDIKASLIALVRT*PQGSTT Trigger: TGTTGTGGATCCTTGGGGGCAGGTCCTAACCAAAGC...AATCAAAGAAGCCTTGATATCTGTTTCAAAAATGTCACCAACAGGATGATGCTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000231934.2 |
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| 3UTR-3UTR TCA 90 bp | CATCCTGTTGGTGACATTTTTGAAACAGATATCAAGGCTTCTTTGATTCCACTGCTTCAGGTCTATGTCTaGGTACAGGATTGTTTCCTC | + |
|
Preference number: 2 (lower is better) Translates to: HPVGDIFETDIKASLIPLLQVYV*VQDCFL Trigger: GAGGAAACAATCCTGTACTCAGACATAGACCTGAAG...CAGTGGAATCAAAGAAGCCTTGATATCTGTTTCAAAAATGTCACCAACAGGATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000231423.2 ENSMUST00000231934.2 |
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| 3UTR CCA 72 bp | TGTCTGAGTACAGGATTGTTTCCTCCGTGCCAGCTTTaGTTAGGACCTGCCCCCAAGGATCCACAACAGTGC | + |
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Preference number: 3 (lower is better) Translates to: CLSTGLFPPCQL*LGPAPKDPQQC Trigger: GCACTGTTGTGGATCCTTGGGGGCAGGTCCTAACCAAAGCTGGCACGGAGGAAACAATCCTGTACTCAGACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000231934.2 |
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| 3UTR GCA 72 bp | TCAGGTCTATGTCTGAGTACAGGATTGTTTCCTCCGTaGCAGCTTTGGTTAGGACCTGCCCCCAAGGATCCA | + |
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Preference number: 3 (lower is better) Translates to: SGLCLSTGLFPP*QLWLGPAPKDP Trigger: TGGATCCTTGGGGGCAGGTCCTAACCAAAGCTGGCACGGAGGAAACAATCCTGTACTCAGACATAGACCTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000231934.2 |
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| 3UTR-3UTR CAA 90 bp | TCCTCCGTGCCAGCTTTGGTTAGGACCTGCCCCCTGAAGAAAATCCAGAGAATGCAGAGCATCATCCTGTaGGTGACATTTTTGAAACAG | + |
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Preference number: 3 (lower is better) Translates to: SSVPALVRTCPLKKIQRMQSIIL*VTFLKQ Trigger: CTGTTTCAAAAATGTCACCAACAGGATGATGCTCTG...CATTCTCTGGATTTTCTTCAGGGGGCAGGTCCTAACCAAAGCTGGCACGGAGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000231423.2 |
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| 3UTR-3UTR CAA 90 bp | CTGGTAAATGTACATTTTCTCAGACAGATGGGACCAGCCCACCACACATGGAAACAGAGCATCATCCTGTaGGTGACATTTTTGAAACAG | + |
|
Preference number: 3 (lower is better) Translates to: LVNVHFLRQMGPAHHTWKQSIIL*VTFLKQ Trigger: CTGTTTCAAAAATGTCACCAACAGGATGATGCTCTG...TTTCCATGTGTGGTGGGCTGGTCCCATCTGTCTGAGAAAATGTACATTTACCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023432.10 ENSMUST00000231733.2 |
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| 3UTR GCA 72 bp | AGACAGATGGGACCAGCCCACCACACATGGAAACAATaGTTAGAGGCTTCAGTTTTTAATTGTTCAAAAGGA | + |
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Preference number: 3 (lower is better) Translates to: RQMGPAHHTWKQ*LEASVFNCSKG Trigger: TCCTTTTGAACAATTAAAAACTGAAGCCTCTAAGCATTGTTTCCATGTGTGGTGGGCTGGTCCCATCTGTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023432.10 ENSMUST00000231733.2 |
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| 3UTR-3UTR CAA 90 bp | CATCATCCTGTTGGTGACATTTTTGAAACAGATATCAAGGCTTCTTTGATTCCACAGAGCATCATCCTGTaGGTGACATTTTTGAAACAG | + |
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Preference number: 3 (lower is better) Translates to: HHPVGDIFETDIKASLIPQSIIL*VTFLKQ Trigger: CTGTTTCAAAAATGTCACCAACAGGATGATGCTCTG...TGGAATCAAAGAAGCCTTGATATCTGTTTCAAAAATGTCACCAACAGGATGATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000231423.2 ENSMUST00000231934.2 |
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| 3UTR TCA 72 bp | TTGGTGACATTTTTGAAACAGATATCAAGGCTTCTTTaGTTCCACTGTATAGAGGTCTGCTCGTTTCTGTTT | + |
|
Preference number: 3 (lower is better) Translates to: LVTFLKQISRLL*FHCIEVCSFLF Trigger: AAACAGAAACGAGCAGACCTCTATACAGTGGAATCAAAGAAGCCTTGATATCTGTTTCAAAAATGTCACCAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000231423.2 ENSMUST00000231934.2 |
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| CDS-3UTR CCA 90 bp | TCTCAGACAGATGGGACCAGCCCACCACACATGGAAACAATGCTTAGAGGCTTCCCTCCGTGCCAGCTTTaGTTAGGACCTGCCCCCAAG | + |
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Preference number: 4 (lower is better) Translates to: SQTDGTSPPHMETMLRGFPPCQL*LGPAPK Trigger: CTTGGGGGCAGGTCCTAACCAAAGCTGGCACGGAGG...GAAGCCTCTAAGCATTGTTTCCATGTGTGGTGGGCTGGTCCCATCTGTCTGAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023432.10 ENSMUST00000231733.2 |
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| CDS-3UTR GCA 90 bp | TCTCAGACAGATGGGACCAGCCCACCACACATGGAAACAATGCTTAGAGGCTTCGCTTTGGTTAGGACCTaGCCCCAAGGATCCACAACA | + |
|
Preference number: 4 (lower is better) Translates to: SQTDGTSPPHMETMLRGFALVRT*PQGSTT Trigger: TGTTGTGGATCCTTGGGGGCAGGTCCTAACCAAAGC...GAAGCCTCTAAGCATTGTTTCCATGTGTGGTGGGCTGGTCCCATCTGTCTGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023432.10 ENSMUST00000231733.2 |
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| CDS-3UTR CCA 90 bp | AATGTACATTTTCTCAGACAGATGGGACCAGCCCACCACACATGGAAACAATGCCCTCCGTGCCAGCTTTaGTTAGGACCTGCCCCCAAG | + |
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Preference number: 4 (lower is better) Translates to: NVHFLRQMGPAHHTWKQCPPCQL*LGPAPK Trigger: CTTGGGGGCAGGTCCTAACCAAAGCTGGCACGGAGG...GCATTGTTTCCATGTGTGGTGGGCTGGTCCCATCTGTCTGAGAAAATGTACATT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023432.10 ENSMUST00000231733.2 |
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| CDS-3UTR GCA 90 bp | GTTCTGGTAAATGTACATTTTCTCAGACAGATGGGACCAGCCCACCACACATGGACTATGTTGGCACCTTaGTTTGCTGCCTCCCGCACT | + |
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Preference number: 4 (lower is better) Translates to: VLVNVHFLRQMGPAHHTWTMLAP*FAASRT Trigger: AGTGCGGGAGGCAGCAAAGCAAGGTGCCAACATAGT...CCATGTGTGGTGGGCTGGTCCCATCTGTCTGAGAAAATGTACATTTACCAGAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023432.10 |
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| CDS-3UTR GCA 90 bp | GTTCTGGTAAATGTACATTTTCTCAGACAGATGGGACCAGCCCACCACACATGGAAGGATCCACAACAGTaGTGTGTCCCCAGGCCACAT | + |
|
Preference number: 4 (lower is better) Translates to: VLVNVHFLRQMGPAHHTWKDPQQ*CVPRPH Trigger: ATGTGGCCTGGGGACACAGCACTGTTGTGGATCCTT...CCATGTGTGGTGGGCTGGTCCCATCTGTCTGAGAAAATGTACATTTACCAGAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023432.10 ENSMUST00000231733.2 |
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| CDS-3UTR GCA 90 bp | GGGGATTCGCCAACCTCAAGTTCTCTATATTTCCTCCTTGTGTACCAGGCCAAAAAGGATCCACAACAGTaGTGTGTCCCCAGGCCACAT | + |
|
Preference number: 4 (lower is better) Translates to: GDSPTSSSLYFLLVYQAKKDPQQ*CVPRPH Trigger: ATGTGGCCTGGGGACACAGCACTGTTGTGGATCCTT...TTTGGCCTGGTACACAAGGAGGAAATATAGAGAACTTGAGGTTGGCGAATCCCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000231423.2 |
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| 3UTR CAA 72 bp | ATGTCTGAGTACAGGATTGTTTCCTCCGTGCCAGCTTaGGTTAGGACCTGCCCCCTGAAGAAAATCCAGAGA | + |
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Preference number: 4 (lower is better) Translates to: MSEYRIVSSVPA*VRTCPLKKIQR Trigger: TCTCTGGATTTTCTTCAGGGGGCAGGTCCTAACCAAAGCTGGCACGGAGGAAACAATCCTGTACTCAGACAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000231423.2 |
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| CDS-3UTR GCA 90 bp | CTGGTAAATGTACATTTTCTCAGACAGATGGGACCAGCCCACCACACATGGAAAAAGGATCCACAACAGTaGTGTGTCCCCAGGCCACAT | + |
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Preference number: 4 (lower is better) Translates to: LVNVHFLRQMGPAHHTWKKDPQQ*CVPRPH Trigger: ATGTGGCCTGGGGACACAGCACTGTTGTGGATCCTT...TTTCCATGTGTGGTGGGCTGGTCCCATCTGTCTGAGAAAATGTACATTTACCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000023432.10 ENSMUST00000231733.2 |
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| CDS-3UTR TCA 90 bp | AATGTACATTTTCTCAGACAGATGGGACCAGCCCACCACACATGGAAACAATGCGGATGGAGCCTCCAATaGGATATATGCTGCTCTCCT | + |
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Preference number: 4 (lower is better) Translates to: NVHFLRQMGPAHHTWKQCGWSLQ*DICCSP Trigger: AGGAGAGCAGCATATATCTCATTGGAGGCTCCATCC...GCATTGTTTCCATGTGTGGTGGGCTGGTCCCATCTGTCTGAGAAAATGTACATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023432.10 |
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| CDS-3UTR TCA 90 bp | AATGTACATTTTCTCAGACAGATGGGACCAGCCCACCACACATGGAAACAATGCGTCCTGTGGTCAGATTaGAAGCTCCAGGATACACCA | + |
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Preference number: 4 (lower is better) Translates to: NVHFLRQMGPAHHTWKQCVLWSD*KLQDTP Trigger: TGGTGTATCCTGGAGCTTTCAATCTGACCACAGGAC...GCATTGTTTCCATGTGTGGTGGGCTGGTCCCATCTGTCTGAGAAAATGTACATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023432.10 ENSMUST00000231733.2 |
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| CDS-3UTR GCA 90 bp | GTAAATGTACATTTTCTCAGACAGATGGGACCAGCCCACCACACATGGAAACAAGCTTTGGTTAGGACCTaGCCCCAAGGATCCACAACA | + |
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Preference number: 4 (lower is better) Translates to: VNVHFLRQMGPAHHTWKQALVRT*PQGSTT Trigger: TGTTGTGGATCCTTGGGGGCAGGTCCTAACCAAAGC...TTGTTTCCATGTGTGGTGGGCTGGTCCCATCTGTCTGAGAAAATGTACATTTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023432.10 ENSMUST00000231733.2 |
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| CDS-3UTR CCA 90 bp | CATTTTCTCAGACAGATGGGACCAGCCCACCACACATGGAAACAATGCTTAGAGAAGGCGTATCAAATGTaGAGAAACTATCACCAGGGC | + |
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Preference number: 4 (lower is better) Translates to: HFLRQMGPAHHTWKQCLEKAYQM*RNYHQG Trigger: GCCCTGGTGATAGTTTCTCCACATTTGATACGCCTT...CTCTAAGCATTGTTTCCATGTGTGGTGGGCTGGTCCCATCTGTCTGAGAAAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023432.10 ENSMUST00000231733.2 |
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| CDS-3UTR TCA 90 bp | CATTTTCTCAGACAGATGGGACCAGCCCACCACACATGGAAACAATGCTTAGAGTTCCATATGGAGAATTaGAGCACTCAGGCAGAGAAA | + |
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Preference number: 4 (lower is better) Translates to: HFLRQMGPAHHTWKQCLEFHMEN*STQAEK Trigger: TTTCTCTGCCTGAGTGCTTCAATTCTCCATATGGAA...CTCTAAGCATTGTTTCCATGTGTGGTGGGCTGGTCCCATCTGTCTGAGAAAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023432.10 |
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| CDS-3UTR TCA 90 bp | CCAGCCCACCACACATGGAAACAATGCTTAGAGGCTTCAGTTTTTAATTGTTCAGTCCTGTGGTCAGATTaGAAGCTCCAGGATACACCA | + |
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Preference number: 4 (lower is better) Translates to: PAHHTWKQCLEASVFNCSVLWSD*KLQDTP Trigger: TGGTGTATCCTGGAGCTTTCAATCTGACCACAGGAC...TGAACAATTAAAAACTGAAGCCTCTAAGCATTGTTTCCATGTGTGGTGGGCTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023432.10 ENSMUST00000231733.2 |
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| CDS-3UTR CCA 90 bp | GTTCTGGTAAATGTACATTTTCTCAGACAGATGGGACCAGCCCACCACACATGGCAGAAAGCTTTTGTGTaGACTCTCCAGGAATCTTCT | + |
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Preference number: 4 (lower is better) Translates to: VLVNVHFLRQMGPAHHTWQKAFV*TLQESS Trigger: AGAAGATTCCTGGAGAGTCCACACAAAAGCTTTCTG...CCATGTGTGGTGGGCTGGTCCCATCTGTCTGAGAAAATGTACATTTACCAGAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023432.10 |
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| CDS-3UTR GCA 90 bp | AATGTACATTTTCTCAGACAGATGGGACCAGCCCACCACACATGGAAACAATGCTTTAAAATGGGGATTTaGTGCCGAATTTCAGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: NVHFLRQMGPAHHTWKQCFKMGI*CRISAS Trigger: GCTGGCTGAAATTCGGCAGCAAATCCCCATTTTAAA...GCATTGTTTCCATGTGTGGTGGGCTGGTCCCATCTGTCTGAGAAAATGTACATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000023432.10 ENSMUST00000231733.2 |
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| CDS-3UTR GCA 90 bp | GTAAATGTACATTTTCTCAGACAGATGGGACCAGCCCACCACACATGGAAACAATTTAAAATGGGGATTTaGTGCCGAATTTCAGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: VNVHFLRQMGPAHHTWKQFKMGI*CRISAS Trigger: GCTGGCTGAAATTCGGCAGCAAATCCCCATTTTAAA...TTGTTTCCATGTGTGGTGGGCTGGTCCCATCTGTCTGAGAAAATGTACATTTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000023432.10 ENSMUST00000231733.2 |
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| CDS-3UTR GCA 90 bp | CCTGTTGGTGACATTTTTGAAACAGATATCAAGGCTTCTTTGATTCCACTGTATTGCCCAGGCCCACTTTaGAGTAAGCTTCCTGTGCTT | + |
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Preference number: 4 (lower is better) Translates to: PVGDIFETDIKASLIPLYCPGPL*SKLPVL Trigger: AAGCACAGGAAGCTTACTGCAAAGTGGGCCTGGGCA...ATACAGTGGAATCAAAGAAGCCTTGATATCTGTTTCAAAAATGTCACCAACAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000231934.2 |
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| CDS-3UTR TCA 90 bp | CATCATCCTGTTGGTGACATTTTTGAAACAGATATCAAGGCTTCTTTGATTCCAGTCCTGTGGTCAGATTaGAAGCTCCAGGATACACCA | + |
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Preference number: 4 (lower is better) Translates to: HHPVGDIFETDIKASLIPVLWSD*KLQDTP Trigger: TGGTGTATCCTGGAGCTTTCAATCTGACCACAGGAC...TGGAATCAAAGAAGCCTTGATATCTGTTTCAAAAATGTCACCAACAGGATGATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000231423.2 |
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| CDS-3UTR CCA 90 bp | CCAGAGAATGAATGGGGATTCGCCAACCTCAAGTTCTCTATATTTCCTCCTTGTTCAATGTCAAACAGATaGATCTTCCTGTGCTTTACC | + |
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Preference number: 4 (lower is better) Translates to: PENEWGFANLKFSIFPPCSMSNR*IFLCFT Trigger: GGTAAAGCACAGGAAGATCCATCTGTTTGACATTGA...ACAAGGAGGAAATATAGAGAACTTGAGGTTGGCGAATCCCCATTCATTCTCTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231423.2 |
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| CDS-3UTR CCA 90 bp | GTAAATGTACATTTTCTCAGACAGATGGGACCAGCCCACCACACATGGAAACAATCAATGTCAAACAGATaGATCTTCCTGTGCTTTACC | + |
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Preference number: 4 (lower is better) Translates to: VNVHFLRQMGPAHHTWKQSMSNR*IFLCFT Trigger: GGTAAAGCACAGGAAGATCCATCTGTTTGACATTGA...TTGTTTCCATGTGTGGTGGGCTGGTCCCATCTGTCTGAGAAAATGTACATTTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023432.10 ENSMUST00000231733.2 |
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| CDS-3UTR CCA 90 bp | GTTCTGGTAAATGTACATTTTCTCAGACAGATGGGACCAGCCCACCACACATGGGTTTCTGTTTTAAAATaGGGATTTGCTGCCGAATTT | + |
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Preference number: 4 (lower is better) Translates to: VLVNVHFLRQMGPAHHTWVSVLK*GFAAEF Trigger: AAATTCGGCAGCAAATCCCCATTTTAAAACAGAAAC...CCATGTGTGGTGGGCTGGTCCCATCTGTCTGAGAAAATGTACATTTACCAGAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000023432.10 ENSMUST00000231733.2 |
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| CDS-3UTR TCA 90 bp | AGGCTTCAGTTTTTAATTGTTCAAAAGGATCTTGGGACTGAAATGCCTAGGAACCTTCAGGTCTATGTCTaGGTACAGGATTGTTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: RLQFLIVQKDLGTEMPRNLQVYV*VQDCFL Trigger: GAGGAAACAATCCTGTACTCAGACATAGACCTGAAG...GTTCCTAGGCATTTCAGTCCCAAGATCCTTTTGAACAATTAAAAACTGAAGCCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023432.10 ENSMUST00000231733.2 |
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| CDS-3UTR CCA 90 bp | GTAAATGTACATTTTCTCAGACAGATGGGACCAGCCCACCACACATGGAAACAAGTTTCTGTTTTAAAATaGGGATTTGCTGCCGAATTT | + |
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Preference number: 4 (lower is better) Translates to: VNVHFLRQMGPAHHTWKQVSVLK*GFAAEF Trigger: AAATTCGGCAGCAAATCCCCATTTTAAAACAGAAAC...TTGTTTCCATGTGTGGTGGGCTGGTCCCATCTGTCTGAGAAAATGTACATTTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000023432.10 ENSMUST00000231733.2 |
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| CDS-3UTR GCA 90 bp | AGGCTTCAGTTTTTAATTGTTCAAAAGGATCTTGGGACTGAAATGCCTAGGAACTATGCTGCTCTCCTTTaGTACTTCAGAAAGCTTTTG | + |
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Preference number: 4 (lower is better) Translates to: RLQFLIVQKDLGTEMPRNYAALL*YFRKLL Trigger: CAAAAGCTTTCTGAAGTAGCAAAGGAGAGCAGCATA...GTTCCTAGGCATTTCAGTCCCAAGATCCTTTTGAACAATTAAAAACTGAAGCCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023432.10 |
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| CDS-3UTR GCA 90 bp | CCTGTTGGTGACATTTTTGAAACAGATATCAAGGCTTCTTTGATTCCACTGTATGCAGTAAGCTTCCTGTaGTTTACCAGTAAACTTCCA | + |
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Preference number: 4 (lower is better) Translates to: PVGDIFETDIKASLIPLYAVSFL*FTSKLP Trigger: TGGAAGTTTACTGGTAAAGCACAGGAAGCTTACTGC...ATACAGTGGAATCAAAGAAGCCTTGATATCTGTTTCAAAAATGTCACCAACAGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000231934.2 |
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| CDS-3UTR CCA 90 bp | AGGCTTCAGTTTTTAATTGTTCAAAAGGATCTTGGGACTGAAATGCCTAGGAACTCAATGTCAAACAGATaGATCTTCCTGTGCTTTACC | + |
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Preference number: 4 (lower is better) Translates to: RLQFLIVQKDLGTEMPRNSMSNR*IFLCFT Trigger: GGTAAAGCACAGGAAGATCCATCTGTTTGACATTGA...GTTCCTAGGCATTTCAGTCCCAAGATCCTTTTGAACAATTAAAAACTGAAGCCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023432.10 ENSMUST00000231733.2 |
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| CDS-3UTR CAA 90 bp | CATTTTCTCAGACAGATGGGACCAGCCCACCACACATGGAAACAATGCTTAGAGAACTATGTTGGCACCTaGCTTTGCTGCCTCCCGCAC | + |
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Preference number: 5 (lower is better) Translates to: HFLRQMGPAHHTWKQCLENYVGT*LCCLPH Trigger: GTGCGGGAGGCAGCAAAGCAAGGTGCCAACATAGTT...CTCTAAGCATTGTTTCCATGTGTGGTGGGCTGGTCCCATCTGTCTGAGAAAATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023432.10 |
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| CDS-3UTR CAA 90 bp | TCTCAGACAGATGGGACCAGCCCACCACACATGGAAACAATGCTTAGAGGCTTCGTTCCATATGGAGAATaGAAGCACTCAGGCAGAGAA | + |
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Preference number: 5 (lower is better) Translates to: SQTDGTSPPHMETMLRGFVPYGE*KHSGRE Trigger: TTCTCTGCCTGAGTGCTTCAATTCTCCATATGGAAC...GAAGCCTCTAAGCATTGTTTCCATGTGTGGTGGGCTGGTCCCATCTGTCTGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023432.10 |
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| CDS-3UTR CAA 90 bp | GTTCTGGTAAATGTACATTTTCTCAGACAGATGGGACCAGCCCACCACACATGGTGTCTGAGTACAGGATaGTTTCCTCCGTGCCAGCTT | + |
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Preference number: 5 (lower is better) Translates to: VLVNVHFLRQMGPAHHTWCLSTG*FPPCQL Trigger: AAGCTGGCACGGAGGAAACAATCCTGTACTCAGACA...CCATGTGTGGTGGGCTGGTCCCATCTGTCTGAGAAAATGTACATTTACCAGAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023432.10 ENSMUST00000231733.2 |
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| CDS-3UTR CAA 90 bp | ATGTACATTTTCTCAGACAGATGGGACCAGCCCACCACACATGGAAACAATGCTGAGCTGGCAGCCTCTTaGTGCATAGATTTGTGCAAG | + |
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Preference number: 5 (lower is better) Translates to: MYIFSDRWDQPTTHGNNAELAAS*CIDLCK Trigger: CTTGCACAAATCTATGCACAAAGAGGCTGCCAGCTC...AGCATTGTTTCCATGTGTGGTGGGCTGGTCCCATCTGTCTGAGAAAATGTACAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023432.10 ENSMUST00000231733.2 |
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| CDS-3UTR CAA 90 bp | AATGTACATTTTCTCAGACAGATGGGACCAGCCCACCACACATGGAAACAATGCTGTCTGAGTACAGGATaGTTTCCTCCGTGCCAGCTT | + |
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Preference number: 5 (lower is better) Translates to: NVHFLRQMGPAHHTWKQCCLSTG*FPPCQL Trigger: AAGCTGGCACGGAGGAAACAATCCTGTACTCAGACA...GCATTGTTTCCATGTGTGGTGGGCTGGTCCCATCTGTCTGAGAAAATGTACATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023432.10 ENSMUST00000231733.2 |
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| CDS CCA 90 bp | TCCAGGAATCTTCTCTGCATAGTCAGGAAAGTAGGTTGTTCCATATaGAGAATTGAAGCACTCAGGCAGAGAAACTATGTTGGCACCTTG | + |
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Preference number: 5 (lower is better) Translates to: SRNLLCIVRKVGCSI*RIEALRQRNYVGTL Trigger: CAAGGTGCCAACATAGTTTCTCTGCCTGAGTGCTTCAATTCTCCATATGGAACAACCTACTTTCCTGACTATGCAGAGAAGATTCCTGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023432.10 |
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| CDS-3UTR CAA 90 bp | CCAGCCCACCACACATGGAAACAATGCTTAGAGGCTTCAGTTTTTAATTGTTCATTTAATGGAAGAAACTaGAAGCTGTATGAGGGCCAG | + |
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Preference number: 5 (lower is better) Translates to: PAHHTWKQCLEASVFNCSFNGRN*KLYEGQ Trigger: CTGGCCCTCATACAGCTTCAAGTTTCTTCCATTAAA...TGAACAATTAAAAACTGAAGCCTCTAAGCATTGTTTCCATGTGTGGTGGGCTGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023432.10 |
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| CDS-3UTR CAA 90 bp | CCTGTTGGTGACATTTTTGAAACAGATATCAAGGCTTCTTTGATTCCACTGTATGAGCTGGCAGCCTCTTaGTGCATAGATTTGTGCAAG | + |
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Preference number: 5 (lower is better) Translates to: PVGDIFETDIKASLIPLYELAAS*CIDLCK Trigger: CTTGCACAAATCTATGCACAAAGAGGCTGCCAGCTC...ATACAGTGGAATCAAAGAAGCCTTGATATCTGTTTCAAAAATGTCACCAACAGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000231423.2 ENSMUST00000231934.2 |
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| CDS CAA 72 bp | ATACACCAAGAGCTGGCAGCCTCTTTGTGCATAGATTaGTGCAAGCTCCGCGAAGCGCATATCATAGCAGAT | + |
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Preference number: 6 (lower is better) Translates to: IHQELAASLCID*CKLREAHIIAD Trigger: ATCTGCTATGATATGCGCTTCGCGGAGCTTGCACAAATCTATGCACAAAGAGGCTGCCAGCTCTTGGTGTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000023432.10 ENSMUST00000231423.2 ENSMUST00000231733.2 ENSMUST00000231934.2 |
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| CDS CCA 72 bp | CTTCTCTGCATAGTCAGGAAAGTAGGTTGTTCCATATaGAGAATTGAAGCACTCAGGCAGAGAAACTATGTT | + |
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Preference number: 6 (lower is better) Translates to: LLCIVRKVGCSI*RIEALRQRNYV Trigger: AACATAGTTTCTCTGCCTGAGTGCTTCAATTCTCCATATGGAACAACCTACTTTCCTGACTATGCAGAGAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023432.10 |
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| CDS CAA 72 bp | GGAGAAACTATCACCAGGGCTCAATGTTTTAGATTCTaGAAACGTAATTTTCCCAGGAACATCAATGTCAAA | + |
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Preference number: 6 (lower is better) Translates to: GETITRAQCFRF*KRNFPRNINVK Trigger: TTTGACATTGATGTTCCTGGGAAAATTACGTTTCAAGAATCTAAAACATTGAGCCCTGGTGATAGTTTCTCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000023432.10 ENSMUST00000231423.2 ENSMUST00000231733.2 |
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