Pregenerated sensors for NIPSNAP3B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015247Ensembl transcript IDs: ENSMUST00000015391.10, ENSMUST00000107665.4
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GTAGCCTTCAAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACTACAGCTCACCTCTGTaGTGGGATGCTCTGGGCTGG | + |
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Preference number: 2 (lower is better) Translates to: VAFKMQRSQCNSSARPSDYSSPL*WDALGW Trigger: CCAGCCCAGAGCATCCCATCACAGAGGTGAGCTGTA...GTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTTGAAGGCTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| 3UTR-3UTR CCA 90 bp | GCCTTCAAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACAATTGGGCGACTCCATCTTaGAGACAGGAAGTGCCCGCT | + |
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Preference number: 2 (lower is better) Translates to: AFKMQRSQCNSSARPSDNWATPS*RQEVPA Trigger: AGCGGGCACTTCCTGTCTCCAAGATGGAGTCGCCCA...ATTGTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTTGAAGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| 3UTR-3UTR TCA 90 bp | AAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACAATGAACTGTACAGCTCACCTCTGTaGTGGGATGCTCTGGGCTGG | + |
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Preference number: 2 (lower is better) Translates to: KMQRSQCNSSARPSDNELYSSPL*WDALGW Trigger: CCAGCCCAGAGCATCCCATCACAGAGGTGAGCTGTA...CAGTTCATTGTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| 3UTR-3UTR GCA 90 bp | GCCTTCAAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACAATCTTGGAGACAGGAAGTaGCCGCTGTGGATACAGCTC | + |
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Preference number: 2 (lower is better) Translates to: AFKMQRSQCNSSARPSDNLGDRK*PLWIQL Trigger: GAGCTGTATCCACAGCGGGCACTTCCTGTCTCCAAG...ATTGTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTTGAAGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| 3UTR-3UTR GCA 90 bp | GCCTTCAAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACAATACCTCTGTGATGGGATaGTCTGGGCTGGGTAGGAAA | + |
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Preference number: 2 (lower is better) Translates to: AFKMQRSQCNSSARPSDNTSVMG*SGLGRK Trigger: TTTCCTACCCAGCCCAGAGCATCCCATCACAGAGGT...ATTGTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTTGAAGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| 3UTR-3UTR GCA 90 bp | AAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACAATGAACTGCTTGGAGACAGGAAGTaGCCGCTGTGGATACAGCTC | + |
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Preference number: 2 (lower is better) Translates to: KMQRSQCNSSARPSDNELLGDRK*PLWIQL Trigger: GAGCTGTATCCACAGCGGGCACTTCCTGTCTCCAAG...CAGTTCATTGTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| 3UTR-3UTR GCA 90 bp | AAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACAATGAACTGACCTCTGTGATGGGATaGTCTGGGCTGGGTAGGAAA | + |
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Preference number: 2 (lower is better) Translates to: KMQRSQCNSSARPSDNELTSVMG*SGLGRK Trigger: TTTCCTACCCAGCCCAGAGCATCCCATCACAGAGGT...CAGTTCATTGTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| 3UTR CCA 72 bp | CCCGTCCTTCAGACAATGAACTGGGCGACTCCATCTTaGAGACAGGAAGTGCCCGCTGTGGATACAGCTCAC | + |
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Preference number: 3 (lower is better) Translates to: PVLQTMNWATPS*RQEVPAVDTAH Trigger: GTGAGCTGTATCCACAGCGGGCACTTCCTGTCTCCAAGATGGAGTCGCCCAGTTCATTGTCTGAAGGACGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| 3UTR TCA 72 bp | GACTTAGTCATAAAAATCTCAGAAGGCAAGATATTGTaGAACAATGAAGTACCAGGGCACGGAGTAACAATG | + |
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Preference number: 3 (lower is better) Translates to: DLVIKISEGKIL*NNEVPGHGVTM Trigger: CATTGTTACTCCGTGCCCTGGTACTTCATTGTTTCACAATATCTTGCCTTCTGAGATTTTTATGACTAAGTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015391.10 |
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| CDS-3UTR TCA 90 bp | CCTTCAAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACAATGACTCTAGGGTCCTCGTaGGACCAGTGTCTCCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: PSRCRGHSVIAQPVLQTMTLGSS*DQCLPA Trigger: AGCTGGGAGACACTGGTCTCACGAGGACCCTAGAGT...CATTGTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTTGAAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| CDS-3UTR CCA 90 bp | GTAGCCTTCAAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACGCCATTCCTTATCCTTaGCCAAGGCTTTGCGGACTG | + |
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Preference number: 4 (lower is better) Translates to: VAFKMQRSQCNSSARPSDAIPYP*PRLCGL Trigger: CAGTCCGCAAAGCCTTGGCCAAGGATAAGGAATGGC...GTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTTGAAGGCTAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| CDS-3UTR TCA 90 bp | CCTTCAAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACAATGGCCTGTAGCAAAAGGTaGACATACCTGAGGCGTCAG | + |
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Preference number: 4 (lower is better) Translates to: PSRCRGHSVIAQPVLQTMACSKR*TYLRRQ Trigger: CTGACGCCTCAGGTATGTTCACCTTTTGCTACAGGC...CATTGTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTTGAAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| CDS-3UTR GCA 90 bp | AAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACAATGAACTGCCTTGGCCAAGGCTTTaGGGACTGCAGTTCGATGAG | + |
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Preference number: 4 (lower is better) Translates to: KMQRSQCNSSARPSDNELPWPRL*GLQFDE Trigger: CTCATCGAACTGCAGTCCGCAAAGCCTTGGCCAAGG...CAGTTCATTGTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| CDS-3UTR CCA 90 bp | CCTTCAAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACAATGGCCATTCCTTATCCTTaGCCAAGGCTTTGCGGACTG | + |
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Preference number: 4 (lower is better) Translates to: PSRCRGHSVIAQPVLQTMAIPYP*PRLCGL Trigger: CAGTCCGCAAAGCCTTGGCCAAGGATAAGGAATGGC...CATTGTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTTGAAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| CDS-3UTR TCA 90 bp | AAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACAATGAACTGGCCTGTAGCAAAAGGTaGACATACCTGAGGCGTCAG | + |
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Preference number: 4 (lower is better) Translates to: KMQRSQCNSSARPSDNELACSKR*TYLRRQ Trigger: CTGACGCCTCAGGTATGTTCACCTTTTGCTACAGGC...CAGTTCATTGTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| CDS-3UTR TCA 90 bp | CCTTCAAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACAATGTTCCACCACAGAACATaGACTTCCTTGGGAGGCGTT | + |
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Preference number: 4 (lower is better) Translates to: PSRCRGHSVIAQPVLQTMFHHRT*TSLGGV Trigger: AACGCCTCCCAAGGAAGTTCATGTTCTGTGGTGGAA...CATTGTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTTGAAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107665.4 |
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| CDS-3UTR GCA 90 bp | GTAGCCTTCAAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACGGAATTCATAGAATGTaGCATTGCTTTGCCTGGGGC | + |
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Preference number: 4 (lower is better) Translates to: VAFKMQRSQCNSSARPSDGIHRM*HCFAWG Trigger: GCCCCAGGCAAAGCAATGGCACATTCTATGAATTCC...GTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTTGAAGGCTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| CDS-3UTR TCA 90 bp | CCTTCAAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACAATGGAACATGAACTCTGTTaGGGGCTCCATATTCGGTGT | + |
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Preference number: 4 (lower is better) Translates to: PSRCRGHSVIAQPVLQTMEHELC*GLHIRC Trigger: ACACCGAATATGGAGCCCTCAACAGAGTTCATGTTC...CATTGTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTTGAAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015391.10 |
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| CDS-3UTR GCA 90 bp | GCCTTCAAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACAATATGAGGAATCGTTCCTaGCATTCCTTATCCTTGGCC | + |
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Preference number: 4 (lower is better) Translates to: AFKMQRSQCNSSARPSDNMRNRS*HSLSLA Trigger: GGCCAAGGATAAGGAATGGCAGGAACGATTCCTCAT...ATTGTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTTGAAGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| CDS-3UTR TCA 90 bp | GTAGCCTTCAAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACTTGTCTTTGAGGGCTTaGGAAAATAGGTGCGGAATT | + |
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Preference number: 4 (lower is better) Translates to: VAFKMQRSQCNSSARPSDLSLRA*ENRCGI Trigger: AATTCCGCACCTATTTTCTCAAGCCCTCAAAGACAA...GTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTTGAAGGCTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| CDS-3UTR TCA 90 bp | GTAGCCTTCAAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACAAGCCAAATTTGGAATaGGGAATCGTTCCTGCCATT | + |
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Preference number: 4 (lower is better) Translates to: VAFKMQRSQCNSSARPSDKPNLE*GIVPAI Trigger: AATGGCAGGAACGATTCCTCATTCCAAATTTGGCTT...GTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTTGAAGGCTAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| CDS-3UTR GCA 90 bp | AAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACAATGAACTGGGAATTCATAGAATGTaGCATTGCTTTGCCTGGGGC | + |
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Preference number: 4 (lower is better) Translates to: KMQRSQCNSSARPSDNELGIHRM*HCFAWG Trigger: GCCCCAGGCAAAGCAATGGCACATTCTATGAATTCC...CAGTTCATTGTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| CDS-3UTR TCA 90 bp | GCCTTCAAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACAATTTGTCTTTGAGGGCTTaGGAAAATAGGTGCGGAATT | + |
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Preference number: 4 (lower is better) Translates to: AFKMQRSQCNSSARPSDNLSLRA*ENRCGI Trigger: AATTCCGCACCTATTTTCTCAAGCCCTCAAAGACAA...ATTGTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTTGAAGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| CDS-3UTR TCA 90 bp | GTAGCCTTCAAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACGAACTCATTTGTCTTTaGGGGCTTGAGAAAATAGGT | + |
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Preference number: 4 (lower is better) Translates to: VAFKMQRSQCNSSARPSDELICL*GLEKIG Trigger: ACCTATTTTCTCAAGCCCTCAAAGACAAATGAGTTC...GTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTTGAAGGCTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| CDS-3UTR TCA 90 bp | GCCTTCAAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACAATCGGACTGCAGTTCGATaGGCAAAATTATCATACTTC | + |
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Preference number: 4 (lower is better) Translates to: AFKMQRSQCNSSARPSDNRTAVR*AKLSYF Trigger: GAAGTATGATAATTTTGCTCATCGAACTGCAGTCCG...ATTGTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTTGAAGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| CDS-3UTR CCA 90 bp | CCTTCAAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACAATGGCTCCATATTCGGTGTaGAAAACACCAACTAGTGTA | + |
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Preference number: 4 (lower is better) Translates to: PSRCRGHSVIAQPVLQTMAPYSV*KTPTSV Trigger: TACACTAGTTGGTGTTTTCCACACCGAATATGGAGC...CATTGTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTTGAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015391.10 |
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| CDS-3UTR CCA 90 bp | AAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACAATGAACTGGAACATGAACTTCCTTaGGAGGCGTTCCTATTTTGC | + |
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Preference number: 4 (lower is better) Translates to: KMQRSQCNSSARPSDNELEHELP*EAFLFC Trigger: GCAAAATAGGAACGCCTCCCAAGGAAGTTCATGTTC...CAGTTCATTGTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107665.4 |
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| CDS-3UTR TCA 90 bp | AAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACAATGAACTGCGGACTGCAGTTCGATaGGCAAAATTATCATACTTC | + |
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Preference number: 4 (lower is better) Translates to: KMQRSQCNSSARPSDNELRTAVR*AKLSYF Trigger: GAAGTATGATAATTTTGCTCATCGAACTGCAGTCCG...CAGTTCATTGTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| CDS-3UTR TCA 90 bp | AAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACAATGAACTGAAGCCAAATTTGGAATaGGGAATCGTTCCTGCCATT | + |
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Preference number: 4 (lower is better) Translates to: KMQRSQCNSSARPSDNELKPNLE*GIVPAI Trigger: AATGGCAGGAACGATTCCTCATTCCAAATTTGGCTT...CAGTTCATTGTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| CDS-3UTR CCA 90 bp | GTAGCCTTCAAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACAATGAAAGCCAAATTTaGAATGAGGAATCGTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: VAFKMQRSQCNSSARPSDNESQI*NEESFL Trigger: CAGGAACGATTCCTCATTCCAAATTTGGCTTTCATT...GTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTTGAAGGCTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| CDS-3UTR CCA 90 bp | GCCTTCAAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACAATAATGAAAGCCAAATTTaGAATGAGGAATCGTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: AFKMQRSQCNSSARPSDNNESQI*NEESFL Trigger: CAGGAACGATTCCTCATTCCAAATTTGGCTTTCATT...ATTGTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTTGAAGGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| CDS-3UTR CAA 90 bp | GCCTTCAAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACAATTGCCATTCCTTATCCTaGGCCAAGGCTTTGCGGACT | + |
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Preference number: 5 (lower is better) Translates to: AFKMQRSQCNSSARPSDNCHSLS*AKALRT Trigger: AGTCCGCAAAGCCTTGGCCAAGGATAAGGAATGGCA...ATTGTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTTGAAGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| CDS-3UTR CAA 90 bp | AAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACAATGAACTGTGCCATTCCTTATCCTaGGCCAAGGCTTTGCGGACT | + |
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Preference number: 5 (lower is better) Translates to: KMQRSQCNSSARPSDNELCHSLS*AKALRT Trigger: AGTCCGCAAAGCCTTGGCCAAGGATAAGGAATGGCA...CAGTTCATTGTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| CDS GCA 90 bp | TCTTGTTTATCAATGAAAGCCAAATTTGGAATGAGGAATCGTTCCTaGCATTCCTTATCCTTGGCCAAGGCTTTGCGGACTGCAGTTCGA | + |
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Preference number: 5 (lower is better) Translates to: SCLSMKAKFGMRNRS*HSLSLAKALRTAVR Trigger: TCGAACTGCAGTCCGCAAAGCCTTGGCCAAGGATAAGGAATGGCAGGAACGATTCCTCATTCCAAATTTGGCTTTCATTGATAAACAAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| CDS CCA 90 bp | CAGTTCATAGACTCCTTCCTTGGGAGGCGTTCCTATTTTGCACCATaGTACCAAGTAGGTAATCTCAACCTCTTGTTTATCAATGAAAGC | + |
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Preference number: 5 (lower is better) Translates to: QFIDSFLGRRSYFAP*YQVGNLNLLFINES Trigger: GCTTTCATTGATAAACAAGAGGTTGAGATTACCTACTTGGTACCATGGTGCAAAATAGGAACGCCTCCCAAGGAAGGAGTCTATGAACTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015391.10 |
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| CDS CCA 90 bp | CCACAGAACATGAACTTCCTTGGGAGGCGTTCCTATTTTGCACCATaGTACCAAGTAGGTAATCTCAACCTCTTGTTTATCAATGAAAGC | + |
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Preference number: 5 (lower is better) Translates to: PQNMNFLGRRSYFAP*YQVGNLNLLFINES Trigger: GCTTTCATTGATAAACAAGAGGTTGAGATTACCTACTTGGTACCATGGTGCAAAATAGGAACGCCTCCCAAGGAAGTTCATGTTCTGTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107665.4 |
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| CDS-3UTR CAA 90 bp | AAGATGCAGAGGTCACAGTGTAATAGCTCAGCCCGTCCTTCAGACAATGAACTGGGTAATCTCAACCTCTaGTTTATCAATGAAAGCCAA | + |
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Preference number: 5 (lower is better) Translates to: KMQRSQCNSSARPSDNELGNLNL*FINESQ Trigger: TTGGCTTTCATTGATAAACAAGAGGTTGAGATTACC...CAGTTCATTGTCTGAAGGACGGGCTGAGCTATTACACTGTGACCTCTGCATCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| CDS GCA 72 bp | TCAATGAAAGCCAAATTTGGAATGAGGAATCGTTCCTaGCATTCCTTATCCTTGGCCAAGGCTTTGCGGACT | + |
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Preference number: 6 (lower is better) Translates to: SMKAKFGMRNRS*HSLSLAKALRT Trigger: AGTCCGCAAAGCCTTGGCCAAGGATAAGGAATGGCAGGAACGATTCCTCATTCCAAATTTGGCTTTCATTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| CDS CCA 72 bp | GACTCCTTCCTTGGGAGGCGTTCCTATTTTGCACCATaGTACCAAGTAGGTAATCTCAACCTCTTGTTTATC | + |
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Preference number: 6 (lower is better) Translates to: DSFLGRRSYFAP*YQVGNLNLLFI Trigger: GATAAACAAGAGGTTGAGATTACCTACTTGGTACCATGGTGCAAAATAGGAACGCCTCCCAAGGAAGGAGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015391.10 |
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| CDS CCA 72 bp | ATGAACTTCCTTGGGAGGCGTTCCTATTTTGCACCATaGTACCAAGTAGGTAATCTCAACCTCTTGTTTATC | + |
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Preference number: 6 (lower is better) Translates to: MNFLGRRSYFAP*YQVGNLNLLFI Trigger: GATAAACAAGAGGTTGAGATTACCTACTTGGTACCATGGTGCAAAATAGGAACGCCTCCCAAGGAAGTTCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107665.4 |
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| CDS CAA 90 bp | CGTTCCTATTTTGCACCATGGTACCAAGTAGGTAATCTCAACCTCTaGTTTATCAATGAAAGCCAAATTTGGAATGAGGAATCGTTCCTG | + |
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Preference number: 6 (lower is better) Translates to: RSYFAPWYQVGNLNL*FINESQIWNEESFL Trigger: CAGGAACGATTCCTCATTCCAAATTTGGCTTTCATTGATAAACAAGAGGTTGAGATTACCTACTTGGTACCATGGTGCAAAATAGGAACG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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| CDS CAA 72 bp | TTTGCACCATGGTACCAAGTAGGTAATCTCAACCTCTaGTTTATCAATGAAAGCCAAATTTGGAATGAGGAA | + |
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Preference number: 6 (lower is better) Translates to: FAPWYQVGNLNL*FINESQIWNEE Trigger: TTCCTCATTCCAAATTTGGCTTTCATTGATAAACAAGAGGTTGAGATTACCTACTTGGTACCATGGTGCAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015391.10 ENSMUST00000107665.4 |
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