Pregenerated sensors for NIPSNAP3A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015242Ensembl transcript IDs: ENSMUST00000015386.12, ENSMUST00000107666.2, ENSMUST00000188045.7
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGGGTTGTCTTACAGAAGAGGTATTCACTTCCTTCCAATAAAAGCTaGAATAATTCTCTAGAGAGAATTGAAGCACTGGCCCCTGACACA | + |
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Preference number: 1 (lower is better) Translates to: RVVLQKRYSLPSNKS*NNSLERIEALAPDT Trigger: TGTGTCAGGGGCCAGTGCTTCAATTCTCTCTAGAGAATTATTTCAGCTTTTATTGGAAGGAAGTGAATACCTCTTCTGTAAGACAACCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000015386.12 ENSMUST00000188045.7 |
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| 3UTR-3UTR CCA 90 bp | AAATATGGTCACAAACTTGGAAACACGATCTCATTGAACAAAGGGTTGTCTTACAGAGAATTGAAGCACTaGCCCCTGACACATGTCACA | + |
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Preference number: 2 (lower is better) Translates to: KYGHKLGNTISLNKGLSYRELKH*PLTHVT Trigger: TGTGACATGTGTCAGGGGCCAGTGCTTCAATTCTCT...GTAAGACAACCCTTTGTTCAATGAGATCGTGTTTCCAAGTTTGTGACCATATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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| 3UTR-3UTR CCA 90 bp | TTAAAAATATGGTCACAAACTTGGAAACACGATCTCATTGAACAAAGGGTTGTCAGAGAATTGAAGCACTaGCCCCTGACACATGTCACA | + |
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Preference number: 2 (lower is better) Translates to: LKIWSQTWKHDLIEQRVVRELKH*PLTHVT Trigger: TGTGACATGTGTCAGGGGCCAGTGCTTCAATTCTCT...GACAACCCTTTGTTCAATGAGATCGTGTTTCCAAGTTTGTGACCATATTTTTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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| 3UTR-3UTR CCA 90 bp | TTAAAAATATGGTCACAAACTTGGAAACACGATCTCATTGAACAAAGGGTTGTCATATGGTCACAAACTTaGAAACACGATCTCATTGAA | + |
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Preference number: 2 (lower is better) Translates to: LKIWSQTWKHDLIEQRVVIWSQT*KHDLIE Trigger: TTCAATGAGATCGTGTTTCCAAGTTTGTGACCATAT...GACAACCCTTTGTTCAATGAGATCGTGTTTCCAAGTTTGTGACCATATTTTTAA 34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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| 3UTR-3UTR CAA 90 bp | AAATATGGTCACAAACTTGGAAACACGATCTCATTGAACAAAGGGTTGTCTTACATTTTCCATGTAGAGTaGGGTTTAATAAAAGGGCCC | + |
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Preference number: 3 (lower is better) Translates to: KYGHKLGNTISLNKGLSYIFHVE*GLIKGP Trigger: GGGCCCTTTTATTAAACCCAACTCTACATGGAAAAT...GTAAGACAACCCTTTGTTCAATGAGATCGTGTTTCCAAGTTTGTGACCATATTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107666.2 |
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| 3UTR TCA 72 bp | TTACAGAAGAGGTATTCACTTCCTTCCAATAAAAGCTaGAATAATTCTCTAGAGAGAATTGAAGCACTGGCC | + |
|
Preference number: 3 (lower is better) Translates to: LQKRYSLPSNKS*NNSLERIEALA Trigger: GGCCAGTGCTTCAATTCTCTCTAGAGAATTATTTCAGCTTTTATTGGAAGGAAGTGAATACCTCTTCTGTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015386.12 ENSMUST00000188045.7 |
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| 3UTR TCA 72 bp | AAAAATATGGTCACAAACTTGGAAACACGATCTCATTaGACAAAGGGTTGTCTTACAGAAGAGGTATTCACT | + |
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Preference number: 3 (lower is better) Translates to: KNMVTNLETRSH*TKGCLTEEVFT Trigger: AGTGAATACCTCTTCTGTAAGACAACCCTTTGTTCAATGAGATCGTGTTTCCAAGTTTGTGACCATATTTTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000015386.12 ENSMUST00000188045.7 |
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| CDS-3UTR TCA 90 bp | GGAAATGAACTCTATTTTCCATGTAGAGTTGGGTTTAATAAAAGGGCCCTCAATCACCACCACAGAACATaGACTCTGTTGAGCAATCCA | + |
|
Preference number: 4 (lower is better) Translates to: GNELYFPCRVGFNKRALNHHHRT*TLLSNP Trigger: TGGATTGCTCAACAGAGTTCATGTTCTGTGGTGGTG...ATTGAGGGCCCTTTTATTAAACCCAACTCTACATGGAAAATAGAGTTCATTTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107666.2 |
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| CDS-3UTR CCA 90 bp | AAATATGGTCACAAACTTGGAAACACGATCTCATTGAACAAAGGGTTGTCTTACGCCAATCCTCATCCTTaGCCAAGGCTTTGTATACTG | + |
|
Preference number: 4 (lower is better) Translates to: KYGHKLGNTISLNKGLSYANPHP*PRLCIL Trigger: CAGTATACAAAGCCTTGGCCAAGGATGAGGATTGGC...GTAAGACAACCCTTTGTTCAATGAGATCGTGTTTCCAAGTTTGTGACCATATTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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| CDS-3UTR TCA 90 bp | TTAAAAATATGGTCACAAACTTGGAAACACGATCTCATTGAACAAAGGGTTGTCCACCACCACAGAACATaGACTCTGTTGAGCAATCCA | + |
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Preference number: 4 (lower is better) Translates to: LKIWSQTWKHDLIEQRVVHHHRT*TLLSNP Trigger: TGGATTGCTCAACAGAGTTCATGTTCTGTGGTGGTG...GACAACCCTTTGTTCAATGAGATCGTGTTTCCAAGTTTGTGACCATATTTTTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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| CDS-3UTR TCA 90 bp | AAAGGGTTGTCTTACAGAAGAGGTATTCACTTCCTTCCAATAAAAGCTGAAATACACCACCACAGAACATaGACTCTGTTGAGCAATCCA | + |
|
Preference number: 4 (lower is better) Translates to: KGLSYRRGIHFLPIKAEIHHHRT*TLLSNP Trigger: TGGATTGCTCAACAGAGTTCATGTTCTGTGGTGGTG...TATTTCAGCTTTTATTGGAAGGAAGTGAATACCTCTTCTGTAAGACAACCCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015386.12 ENSMUST00000188045.7 |
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| CDS-3UTR CCA 90 bp | TTAAAAATATGGTCACAAACTTGGAAACACGATCTCATTGAACAAAGGGTTGTCGCCAATCCTCATCCTTaGCCAAGGCTTTGTATACTG | + |
|
Preference number: 4 (lower is better) Translates to: LKIWSQTWKHDLIEQRVVANPHP*PRLCIL Trigger: CAGTATACAAAGCCTTGGCCAAGGATGAGGATTGGC...GACAACCCTTTGTTCAATGAGATCGTGTTTCCAAGTTTGTGACCATATTTTTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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| CDS-3UTR CCA 90 bp | AAAGGGTTGTCTTACAGAAGAGGTATTCACTTCCTTCCAATAAAAGCTGAAATAGCCAATCCTCATCCTTaGCCAAGGCTTTGTATACTG | + |
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Preference number: 4 (lower is better) Translates to: KGLSYRRGIHFLPIKAEIANPHP*PRLCIL Trigger: CAGTATACAAAGCCTTGGCCAAGGATGAGGATTGGC...TATTTCAGCTTTTATTGGAAGGAAGTGAATACCTCTTCTGTAAGACAACCCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015386.12 ENSMUST00000188045.7 |
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| CDS-3UTR GCA 90 bp | AAATATGGTCACAAACTTGGAAACACGATCTCATTGAACAAAGGGTTGTCTTACGAGGCTTTCCTATTTTaGACCATGGTACCAAATAGG | + |
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Preference number: 4 (lower is better) Translates to: KYGHKLGNTISLNKGLSYEAFLF*TMVPNR Trigger: CCTATTTGGTACCATGGTGCAAAATAGGAAAGCCTC...GTAAGACAACCCTTTGTTCAATGAGATCGTGTTTCCAAGTTTGTGACCATATTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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| CDS-3UTR GCA 90 bp | AAATATGGTCACAAACTTGGAAACACGATCTCATTGAACAAAGGGTTGTCTTACAGCATGGGCATTTACTaGTCTTTGAAATGCTTCACC | + |
|
Preference number: 4 (lower is better) Translates to: KYGHKLGNTISLNKGLSYSMGIY*SLKCFT Trigger: GGTGAAGCATTTCAAAGAGCAGTAAATGCCCATGCT...GTAAGACAACCCTTTGTTCAATGAGATCGTGTTTCCAAGTTTGTGACCATATTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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| CDS-3UTR TCA 90 bp | AAATATGGTCACAAACTTGGAAACACGATCTCATTGAACAAAGGGTTGTCTTACTATACTGCAGCACGGTaGGCAAAATTATCGTATTTC | + |
|
Preference number: 4 (lower is better) Translates to: KYGHKLGNTISLNKGLSYYTAAR*AKLSYF Trigger: GAAATACGATAATTTTGCTCACCGTGCTGCAGTATA...GTAAGACAACCCTTTGTTCAATGAGATCGTGTTTCCAAGTTTGTGACCATATTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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| CDS-3UTR TCA 90 bp | GGAAATGAACTCTATTTTCCATGTAGAGTTGGGTTTAATAAAAGGGCCCTCAATTATACTGCAGCACGGTaGGCAAAATTATCGTATTTC | + |
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Preference number: 4 (lower is better) Translates to: GNELYFPCRVGFNKRALNYTAAR*AKLSYF Trigger: GAAATACGATAATTTTGCTCACCGTGCTGCAGTATA...ATTGAGGGCCCTTTTATTAAACCCAACTCTACATGGAAAATAGAGTTCATTTCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000107666.2 |
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| CDS-3UTR GCA 90 bp | TTAAAAATATGGTCACAAACTTGGAAACACGATCTCATTGAACAAAGGGTTGTCGAGGCTTTCCTATTTTaGACCATGGTACCAAATAGG | + |
|
Preference number: 4 (lower is better) Translates to: LKIWSQTWKHDLIEQRVVEAFLF*TMVPNR Trigger: CCTATTTGGTACCATGGTGCAAAATAGGAAAGCCTC...GACAACCCTTTGTTCAATGAGATCGTGTTTCCAAGTTTGTGACCATATTTTTAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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| CDS-3UTR GCA 90 bp | AAAGGGTTGTCTTACAGAAGAGGTATTCACTTCCTTCCAATAAAAGCTGAAATAAGCATGGGCATTTACTaGTCTTTGAAATGCTTCACC | + |
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Preference number: 4 (lower is better) Translates to: KGLSYRRGIHFLPIKAEISMGIY*SLKCFT Trigger: GGTGAAGCATTTCAAAGAGCAGTAAATGCCCATGCT...TATTTCAGCTTTTATTGGAAGGAAGTGAATACCTCTTCTGTAAGACAACCCTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015386.12 ENSMUST00000188045.7 |
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| CDS-3UTR GCA 90 bp | TTAAAAATATGGTCACAAACTTGGAAACACGATCTCATTGAACAAAGGGTTGTCAGCATGGGCATTTACTaGTCTTTGAAATGCTTCACC | + |
|
Preference number: 4 (lower is better) Translates to: LKIWSQTWKHDLIEQRVVSMGIY*SLKCFT Trigger: GGTGAAGCATTTCAAAGAGCAGTAAATGCCCATGCT...GACAACCCTTTGTTCAATGAGATCGTGTTTCCAAGTTTGTGACCATATTTTTAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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| CDS-3UTR CCA 90 bp | GGAAATGAACTCTATTTTCCATGTAGAGTTGGGTTTAATAAAAGGGCCCTCAATAATGAGAGGCAAATTTaGAATGAGGAACTGTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: GNELYFPCRVGFNKRALNNERQI*NEELFL Trigger: CAAGAACAGTTCCTCATTCCAAATTTGCCTCTCATT...ATTGAGGGCCCTTTTATTAAACCCAACTCTACATGGAAAATAGAGTTCATTTCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107666.2 |
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| CDS-3UTR CCA 90 bp | AAAGGGTTGTCTTACAGAAGAGGTATTCACTTCCTTCCAATAAAAGCTGAAATAAATGAGAGGCAAATTTaGAATGAGGAACTGTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: KGLSYRRGIHFLPIKAEINERQI*NEELFL Trigger: CAAGAACAGTTCCTCATTCCAAATTTGCCTCTCATT...TATTTCAGCTTTTATTGGAAGGAAGTGAATACCTCTTCTGTAAGACAACCCTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015386.12 ENSMUST00000188045.7 |
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| CDS-3UTR CCA 90 bp | GGAAATGAACTCTATTTTCCATGTAGAGTTGGGTTTAATAAAAGGGCCCTCAATTCCTATTTTGCACCATaGTACCAAATAGGTAATTTC | + |
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Preference number: 4 (lower is better) Translates to: GNELYFPCRVGFNKRALNSYFAP*YQIGNF Trigger: GAAATTACCTATTTGGTACCATGGTGCAAAATAGGA...ATTGAGGGCCCTTTTATTAAACCCAACTCTACATGGAAAATAGAGTTCATTTCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000107666.2 |
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| CDS-3UTR CCA 90 bp | AAATATGGTCACAAACTTGGAAACACGATCTCATTGAACAAAGGGTTGTCTTACTCCTATTTTGCACCATaGTACCAAATAGGTAATTTC | + |
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Preference number: 4 (lower is better) Translates to: KYGHKLGNTISLNKGLSYSYFAP*YQIGNF Trigger: GAAATTACCTATTTGGTACCATGGTGCAAAATAGGA...GTAAGACAACCCTTTGTTCAATGAGATCGTGTTTCCAAGTTTGTGACCATATTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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| CDS-3UTR CCA 90 bp | AAATATGGTCACAAACTTGGAAACACGATCTCATTGAACAAAGGGTTGTCTTACAATCCATACTCTGCATaGAACACACCAATTAGTTTA | + |
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Preference number: 4 (lower is better) Translates to: KYGHKLGNTISLNKGLSYNPYSA*NTPISL Trigger: TAAACTAATTGGTGTGTTCCATGCAGAGTATGGATT...GTAAGACAACCCTTTGTTCAATGAGATCGTGTTTCCAAGTTTGTGACCATATTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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| CDS-3UTR CCA 90 bp | AAAGGGTTGTCTTACAGAAGAGGTATTCACTTCCTTCCAATAAAAGCTGAAATATCCTATTTTGCACCATaGTACCAAATAGGTAATTTC | + |
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Preference number: 4 (lower is better) Translates to: KGLSYRRGIHFLPIKAEISYFAP*YQIGNF Trigger: GAAATTACCTATTTGGTACCATGGTGCAAAATAGGA...TATTTCAGCTTTTATTGGAAGGAAGTGAATACCTCTTCTGTAAGACAACCCTTT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000015386.12 ENSMUST00000188045.7 |
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| CDS-3UTR CCA 90 bp | TTAAAAATATGGTCACAAACTTGGAAACACGATCTCATTGAACAAAGGGTTGTCAATCCATACTCTGCATaGAACACACCAATTAGTTTA | + |
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Preference number: 4 (lower is better) Translates to: LKIWSQTWKHDLIEQRVVNPYSA*NTPISL Trigger: TAAACTAATTGGTGTGTTCCATGCAGAGTATGGATT...GACAACCCTTTGTTCAATGAGATCGTGTTTCCAAGTTTGTGACCATATTTTTAA 34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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| CDS-3UTR CCA 90 bp | AAAGGGTTGTCTTACAGAAGAGGTATTCACTTCCTTCCAATAAAAGCTGAAATAAATCCATACTCTGCATaGAACACACCAATTAGTTTA | + |
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Preference number: 4 (lower is better) Translates to: KGLSYRRGIHFLPIKAEINPYSA*NTPISL Trigger: TAAACTAATTGGTGTGTTCCATGCAGAGTATGGATT...TATTTCAGCTTTTATTGGAAGGAAGTGAATACCTCTTCTGTAAGACAACCCTTT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015386.12 ENSMUST00000188045.7 |
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| CDS-3UTR CAA 90 bp | GGAAATGAACTCTATTTTCCATGTAGAGTTGGGTTTAATAAAAGGGCCCTCAATGGGATCTTCATGGGCTaGCCGTCTCCCAGCTGCCCG | + |
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Preference number: 5 (lower is better) Translates to: GNELYFPCRVGFNKRALNGIFMG*PSPSCP Trigger: CGGGCAGCTGGGAGACGGCAAGCCCATGAAGATCCC...ATTGAGGGCCCTTTTATTAAACCCAACTCTACATGGAAAATAGAGTTCATTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107666.2 |
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| CDS-3UTR CAA 90 bp | AAAGGGTTGTCTTACAGAAGAGGTATTCACTTCCTTCCAATAAAAGCTGAAATAGGGATCTTCATGGGCTaGCCGTCTCCCAGCTGCCCG | + |
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Preference number: 5 (lower is better) Translates to: KGLSYRRGIHFLPIKAEIGIFMG*PSPSCP Trigger: CGGGCAGCTGGGAGACGGCAAGCCCATGAAGATCCC...TATTTCAGCTTTTATTGGAAGGAAGTGAATACCTCTTCTGTAAGACAACCCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015386.12 ENSMUST00000188045.7 |
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| CDS GCA 90 bp | TCTTGTTTGTCAATGAGAGGCAAATTTGGAATGAGGAACTGTTCTTaGCAATCCTCATCCTTGGCCAAGGCTTTGTATACTGCAGCACGG | + |
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Preference number: 5 (lower is better) Translates to: SCLSMRGKFGMRNCS*QSSSLAKALYTAAR Trigger: CCGTGCTGCAGTATACAAAGCCTTGGCCAAGGATGAGGATTGGCAAGAACAGTTCCTCATTCCAAATTTGCCTCTCATTGACAAACAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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| CDS CCA 90 bp | CAAATAGGTAATTTCACTCTCTTGTTTGTCAATGAGAGGCAAATTTaGAATGAGGAACTGTTCTTGCCAATCCTCATCCTTGGCCAAGGC | + |
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Preference number: 5 (lower is better) Translates to: QIGNFTLLFVNERQI*NEELFLPILILGQG Trigger: GCCTTGGCCAAGGATGAGGATTGGCAAGAACAGTTCCTCATTCCAAATTTGCCTCTCATTGACAAACAAGAGAGTGAAATTACCTATTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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| CDS-3UTR CAA 90 bp | GGAAATGAACTCTATTTTCCATGTAGAGTTGGGTTTAATAAAAGGGCCCTCAATTGCCAATCCTCATCCTaGGCCAAGGCTTTGTATACT | + |
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Preference number: 5 (lower is better) Translates to: GNELYFPCRVGFNKRALNCQSSS*AKALYT Trigger: AGTATACAAAGCCTTGGCCAAGGATGAGGATTGGCA...ATTGAGGGCCCTTTTATTAAACCCAACTCTACATGGAAAATAGAGTTCATTTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107666.2 |
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| CDS-3UTR CAA 90 bp | TTAAAAATATGGTCACAAACTTGGAAACACGATCTCATTGAACAAAGGGTTGTCTGCCAATCCTCATCCTaGGCCAAGGCTTTGTATACT | + |
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Preference number: 5 (lower is better) Translates to: LKIWSQTWKHDLIEQRVVCQSSS*AKALYT Trigger: AGTATACAAAGCCTTGGCCAAGGATGAGGATTGGCA...GACAACCCTTTGTTCAATGAGATCGTGTTTCCAAGTTTGTGACCATATTTTTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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| CDS-3UTR CAA 90 bp | TTAAAAATATGGTCACAAACTTGGAAACACGATCTCATTGAACAAAGGGTTGTCAATGAGGAACTGTTCTaGCCAATCCTCATCCTTGGC | + |
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Preference number: 5 (lower is better) Translates to: LKIWSQTWKHDLIEQRVVNEELF*PILILG Trigger: GCCAAGGATGAGGATTGGCAAGAACAGTTCCTCATT...GACAACCCTTTGTTCAATGAGATCGTGTTTCCAAGTTTGTGACCATATTTTTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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| CDS-3UTR CAA 90 bp | GGAAATGAACTCTATTTTCCATGTAGAGTTGGGTTTAATAAAAGGGCCCTCAATATAGAATGTTCCTTCTaGTTGTCTGTGGCCAGTAGT | + |
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Preference number: 5 (lower is better) Translates to: GNELYFPCRVGFNKRALNIECSF*LSVASS Trigger: ACTACTGGCCACAGACAACAAGAAGGAACATTCTAT...ATTGAGGGCCCTTTTATTAAACCCAACTCTACATGGAAAATAGAGTTCATTTCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107666.2 |
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| CDS-3UTR CAA 90 bp | TTAAAAATATGGTCACAAACTTGGAAACACGATCTCATTGAACAAAGGGTTGTCATAGAATGTTCCTTCTaGTTGTCTGTGGCCAGTAGT | + |
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Preference number: 5 (lower is better) Translates to: LKIWSQTWKHDLIEQRVVIECSF*LSVASS Trigger: ACTACTGGCCACAGACAACAAGAAGGAACATTCTAT...GACAACCCTTTGTTCAATGAGATCGTGTTTCCAAGTTTGTGACCATATTTTTAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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| CDS-3UTR CAA 90 bp | AAATATGGTCACAAACTTGGAAACACGATCTCATTGAACAAAGGGTTGTCTTACGGTAATTTCACTCTCTaGTTTGTCAATGAGAGGCAA | + |
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Preference number: 5 (lower is better) Translates to: KYGHKLGNTISLNKGLSYGNFTL*FVNERQ Trigger: TTGCCTCTCATTGACAAACAAGAGAGTGAAATTACC...GTAAGACAACCCTTTGTTCAATGAGATCGTGTTTCCAAGTTTGTGACCATATTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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| CDS-3UTR CAA 90 bp | TTAAAAATATGGTCACAAACTTGGAAACACGATCTCATTGAACAAAGGGTTGTCGGTAATTTCACTCTCTaGTTTGTCAATGAGAGGCAA | + |
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Preference number: 5 (lower is better) Translates to: LKIWSQTWKHDLIEQRVVGNFTL*FVNERQ Trigger: TTGCCTCTCATTGACAAACAAGAGAGTGAAATTACC...GACAACCCTTTGTTCAATGAGATCGTGTTTCCAAGTTTGTGACCATATTTTTAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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| CDS TCA 72 bp | GCCCGAGCGTCTGCGTTCTCACACCACCACAGAACATaGACTCTGTTGAGCAATCCATACTCTGCATGGAAC | + |
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Preference number: 6 (lower is better) Translates to: ARASAFSHHHRT*TLLSNPYSAWN Trigger: GTTCCATGCAGAGTATGGATTGCTCAACAGAGTTCATGTTCTGTGGTGGTGTGAGAACGCAGACGCTCGGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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| CDS CAA 90 bp | CTCTTGTTTGTCAATGAGAGGCAAATTTGGAATGAGGAACTGTTCTaGCCAATCCTCATCCTTGGCCAAGGCTTTGTATACTGCAGCACG | + |
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Preference number: 6 (lower is better) Translates to: LLFVNERQIWNEELF*PILILGQGFVYCST Trigger: CGTGCTGCAGTATACAAAGCCTTGGCCAAGGATGAGGATTGGCAAGAACAGTTCCTCATTCCAAATTTGCCTCTCATTGACAAACAAGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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| CDS CAA 72 bp | GTCAATGAGAGGCAAATTTGGAATGAGGAACTGTTCTaGCCAATCCTCATCCTTGGCCAAGGCTTTGTATAC | + |
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Preference number: 6 (lower is better) Translates to: VNERQIWNEELF*PILILGQGFVY Trigger: GTATACAAAGCCTTGGCCAAGGATGAGGATTGGCAAGAACAGTTCCTCATTCCAAATTTGCCTCTCATTGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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| CDS GCA 72 bp | TCAATGAGAGGCAAATTTGGAATGAGGAACTGTTCTTaGCAATCCTCATCCTTGGCCAAGGCTTTGTATACT | + |
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Preference number: 6 (lower is better) Translates to: SMRGKFGMRNCS*QSSSLAKALYT Trigger: AGTATACAAAGCCTTGGCCAAGGATGAGGATTGGCAAGAACAGTTCCTCATTCCAAATTTGCCTCTCATTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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| CDS TCA 72 bp | TCATCCTTGGCCAAGGCTTTGTATACTGCAGCACGGTaGGCAAAATTATCGTATTTCCAAATATGGAATACA | + |
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Preference number: 6 (lower is better) Translates to: SSLAKALYTAAR*AKLSYFQIWNT Trigger: TGTATTCCATATTTGGAAATACGATAATTTTGCTCACCGTGCTGCAGTATACAAAGCCTTGGCCAAGGATGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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| CDS CCA 72 bp | AATTTCACTCTCTTGTTTGTCAATGAGAGGCAAATTTaGAATGAGGAACTGTTCTTGCCAATCCTCATCCTT | + |
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Preference number: 6 (lower is better) Translates to: NFTLLFVNERQI*NEELFLPILIL Trigger: AAGGATGAGGATTGGCAAGAACAGTTCCTCATTCCAAATTTGCCTCTCATTGACAAACAAGAGAGTGAAATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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| CDS CAA 90 bp | CTTTCCTATTTTGCACCATGGTACCAAATAGGTAATTTCACTCTCTaGTTTGTCAATGAGAGGCAAATTTGGAATGAGGAACTGTTCTTG | + |
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Preference number: 6 (lower is better) Translates to: LSYFAPWYQIGNFTL*FVNERQIWNEELFL Trigger: CAAGAACAGTTCCTCATTCCAAATTTGCCTCTCATTGACAAACAAGAGAGTGAAATTACCTATTTGGTACCATGGTGCAAAATAGGAAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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| CDS CAA 72 bp | TTTGCACCATGGTACCAAATAGGTAATTTCACTCTCTaGTTTGTCAATGAGAGGCAAATTTGGAATGAGGAA | + |
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Preference number: 6 (lower is better) Translates to: FAPWYQIGNFTL*FVNERQIWNEE Trigger: TTCCTCATTCCAAATTTGCCTCTCATTGACAAACAAGAGAGTGAAATTACCTATTTGGTACCATGGTGCAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000015386.12 ENSMUST00000107666.2 ENSMUST00000188045.7 |
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