Pregenerated sensors for NIPSNAP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034285Ensembl transcript IDs: ENSMUST00000038570.9, ENSMUST00000136552.8
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGCTCTGAATGGACACGGCTGCTGTCCCAGGAGGAGGTAGTAACATaGAGAAAAGCGGCTCCACTCGGCCACCCAGACCTTTGCTCCAGA | + |
|
Preference number: 1 (lower is better) Translates to: CSEWTRLLSQEEVVT*RKAAPLGHPDLCSR Trigger: TCTGGAGCAAAGGTCTGGGTGGCCGAGTGGAGCCGCTTTTCTGCATGTTACTACCTCCTCCTGGGACAGCAGCCGTGTCCATTCAGAGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136552.8 |
||
| 3UTR CCA 90 bp | CAGCCCCTCAAGTGGGGCACCGAAGGGTGTGGCCTTTGCTCTGAATaGACACGGCTGCTGTCCCAGGAGGAGGTAGTAACATGCAGAAAA | + |
|
Preference number: 1 (lower is better) Translates to: QPLKWGTEGCGLCSE*TRLLSQEEVVTCRK Trigger: TTTTCTGCATGTTACTACCTCCTCCTGGGACAGCAGCCGTGTCCATTCAGAGCAAAGGCCACACCCTTCGGTGCCCCACTTGAGGGGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136552.8 |
||
| 3UTR CCA 90 bp | ATAAGGACAAATCGGAGAACAGCACTTGAAAACCAGCCCCTCAAGTaGGGCACCGAAGGGTGTGGCCTTTGCTCTGAATGGACACGGCTG | + |
|
Preference number: 1 (lower is better) Translates to: IRTNRRTALENQPLK*GTEGCGLCSEWTRL Trigger: CAGCCGTGTCCATTCAGAGCAAAGGCCACACCCTTCGGTGCCCCACTTGAGGGGCTGGTTTTCAAGTGCTGTTCTCCGATTTGTCCTTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136552.8 |
||
| 3UTR TCA 90 bp | TCTCCTATTTGTGAAAAGAAGCCTCCCACCGCCTCCTGGTTCTCCTaGCGGTACTTGATGGCCCGAGCCCAGTTGTTTCCCCATTCAATC | + |
|
Preference number: 1 (lower is better) Translates to: SPICEKKPPTASWFS*RYLMARAQLFPHSI Trigger: GATTGAATGGGGAAACAACTGGGCTCGGGCCATCAAGTACCGTCAGGAGAACCAGGAGGCGGTGGGAGGCTTCTTTTCACAAATAGGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136552.8 |
||
| 3UTR TCA 90 bp | GGCAGTGCCAGCTTCACTGGAGAGGAGAAATCTTCAGAGGAATCATaGTTCGTGACTCCATGTGTCGAACCAAGGGGACTGTGTAGTAGA | + |
|
Preference number: 1 (lower is better) Translates to: GSASFTGEEKSSEES*FVTPCVEPRGLCSR Trigger: TCTACTACACAGTCCCCTTGGTTCGACACATGGAGTCACGAATCATGATTCCTCTGAAGATTTCTCCTCTCCAGTGAAGCTGGCACTGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136552.8 |
||
| 3UTR TCA 90 bp | CCAGCTTCACTGGAGAGGAGAAATCTTCAGAGGAATCATGATTCGTaGCTCCATGTGTCGAACCAAGGGGACTGTGTAGTAGACATTTTC | + |
|
Preference number: 1 (lower is better) Translates to: PASLERRNLQRNHDS*LHVSNQGDCVVDIF Trigger: GAAAATGTCTACTACACAGTCCCCTTGGTTCGACACATGGAGTCACGAATCATGATTCCTCTGAAGATTTCTCCTCTCCAGTGAAGCTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136552.8 |
||
| 3UTR TCA 90 bp | ACTTCTGGACCACCTACTGACACTGATAACTTCTGGATTTCCTCCTaGCTGTCACGACTTCAGACTTTATGGCAGTTCCAGGATTTTTAT | + |
|
Preference number: 1 (lower is better) Translates to: TSGPPTDTDNFWISS*LSRLQTLWQFQDFY Trigger: ATAAAAATCCTGGAACTGCCATAAAGTCTGAAGTCGTGACAGTCAGGAGGAAATCCAGAAGTTATCAGTGTCAGTAGGTGGTCCAGAAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038570.9 |
||
| 3UTR CCA 90 bp | AAGAGGAAAGTGTGTGAAAGCTTAAAAGGTTGCTATTCTGCAGCTTaGGAAGTTAAGAACTTCTTCATCCAGCATGGGAGAGAGGTTAGC | + |
|
Preference number: 1 (lower is better) Translates to: KRKVCESLKGCYSAA*EVKNFFIQHGREVS Trigger: GCTAACCTCTCTCCCATGCTGGATGAAGAAGTTCTTAACTTCCCAAGCTGCAGAATAGCAACCTTTTAAGCTTTCACACACTTTCCTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038570.9 ENSMUST00000136552.8 |
||
| 3UTR CCA 90 bp | GCTGAAGCACAAATTCAAGTTTTAACCACATTATGTAGGAAAACATaGATACGCCTCTCCATCTGTCTAGGAACAGGGTGCTCCCTTAAG | + |
|
Preference number: 1 (lower is better) Translates to: AEAQIQVLTTLCRKT*IRLSICLGTGCSLK Trigger: CTTAAGGGAGCACCCTGTTCCTAGACAGATGGAGAGGCGTATCCATGTTTTCCTACATAATGTGGTTAAAACTTGAATTTGTGCTTCAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038570.9 |
||
| 3UTR GCA 90 bp | GAGATGACGGATCTTAAGAGGAAAGTGTGTGAAAGCTTAAAAGGTTaGTATTCTGCAGCTTGGGAAGTTAAGAACTTCTTCATCCAGCAT | + |
|
Preference number: 1 (lower is better) Translates to: EMTDLKRKVCESLKG*YSAAWEVKNFFIQH Trigger: ATGCTGGATGAAGAAGTTCTTAACTTCCCAAGCTGCAGAATAGCAACCTTTTAAGCTTTCACACACTTTCCTCTTAAGATCCGTCATCTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038570.9 ENSMUST00000136552.8 |
||
| 3UTR-3UTR CCA 90 bp | CTCATCCAGGTGCAGCTTGGGCAGTACAGCCTCCGTCAGACTGTTGTAGGCATCGGCCTTTGCTCTGAATaGACACGGCTGCTGTCCCAG | + |
|
Preference number: 2 (lower is better) Translates to: LIQVQLGQYSLRQTVVGIGLCSE*TRLLSQ Trigger: CTGGGACAGCAGCCGTGTCCATTCAGAGCAAAGGCC...GATGCCTACAACAGTCTGACGGAGGCTGTACTGCCCAAGCTGCACCTGGATGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136552.8 |
||
| 3UTR-3UTR CCA 90 bp | GGCCTAGAAGCGCCTCCTTTCCAGGCTAGTCCACAGGAGAAAGGGAAGGAGGTGGCAACTGGTTTCTCCTaGACAGCAGCATCTTGCTCC | + |
|
Preference number: 2 (lower is better) Translates to: GLEAPPFQASPQEKGKEVATGFS*TAASCS Trigger: GGAGCAAGATGCTGCTGTCCAGGAGAAACCAGTTGC...CACCTCCTTCCCTTTCTCCTGTGGACTAGCCTGGAAAGGAGGCGCTTCTAGGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136552.8 |
||
| 3UTR-3UTR GCA 90 bp | TTCATCCCAGCCCCTCTTTCTCCAGGCCGCATTTCGAGTCTCCTCCCGAGATTGTGGACAGCAGCATCTTaGTCCGTTCCTTCCGGAACT | + |
|
Preference number: 2 (lower is better) Translates to: FIPAPLSPGRISSLLPRLWTAAS*SVPSGT Trigger: AGTTCCGGAAGGAACGGAGCAAGATGCTGCTGTCCA...CAATCTCGGGAGGAGACTCGAAATGCGGCCTGGAGAAAGAGGGGCTGGGATGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136552.8 |
||
| 3UTR-3UTR CCA 90 bp | TTCATCCCAGCCCCTCTTTCTCCAGGCCGCATTTCGAGTCTCCTCCCGAGATTGTATGCAACTAAGCCATaGCCACAGTTGGGAGCTGGG | + |
|
Preference number: 2 (lower is better) Translates to: FIPAPLSPGRISSLLPRLYATKP*PQLGAG Trigger: CCCAGCTCCCAACTGTGGCCATGGCTTAGTTGCATA...CAATCTCGGGAGGAGACTCGAAATGCGGCCTGGAGAAAGAGGGGCTGGGATGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136552.8 |
||
| 3UTR-3UTR TCA 90 bp | TCTTTCTCCAGGCCGCATTTCGAGTCTCCTCCCGAGATTGCAAATCTTTGTAGGGTGTGGCCTTTGCTCTaGATGGACACGGCTGCTGTC | + |
|
Preference number: 2 (lower is better) Translates to: SFSRPHFESPPEIANLCRVWPLL*MDTAAV Trigger: GACAGCAGCCGTGTCCATTCAGAGCAAAGGCCACAC...CCTACAAAGATTTGCAATCTCGGGAGGAGACTCGAAATGCGGCCTGGAGAAAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136552.8 |
||
| 3UTR-3UTR CCA 90 bp | CCACTTGTGAAGGGTTCCTGCTTCAAGGCTGTCTCATGTACCCAGATCCTTCCCGAAAACTGTGCCAGGTaGCCTAGAAGCGCCTCCTTT | + |
|
Preference number: 2 (lower is better) Translates to: PLVKGSCFKAVSCTQILPENCAR*PRSASF Trigger: AAAGGAGGCGCTTCTAGGCCACCTGGCACAGTTTTC...GGGAAGGATCTGGGTACATGAGACAGCCTTGAAGCAGGAACCCTTCACAAGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038570.9 |
||
| 3UTR-3UTR GCA 90 bp | CAGTGCCAGCTTCACTGGAGAGGAGAAATCTTCAGAGGAATCATGATTCGTGACTGTACTGCCTGGTCCTaGTCCCCGTACCACGTGTTC | + |
|
Preference number: 2 (lower is better) Translates to: QCQLHWRGEIFRGIMIRDCTAWS*SPYHVF Trigger: GAACACGTGGTACGGGGAGCAGGACCAGGCAGTACA...GTCACGAATCATGATTCCTCTGAAGATTTCTCCTCTCCAGTGAAGCTGGCACTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136552.8 |
||
| 3UTR-3UTR GCA 90 bp | TTCATCCCAGCCCCTCTTTCTCCAGGCCGCATTTCGAGTCTCCTCCCGAGATTGGAAAGCTTAAAAGGTTaGTATTCTGCAGCTTGGGAA | + |
|
Preference number: 2 (lower is better) Translates to: FIPAPLSPGRISSLLPRLESLKG*YSAAWE Trigger: TTCCCAAGCTGCAGAATAGCAACCTTTTAAGCTTTC...CAATCTCGGGAGGAGACTCGAAATGCGGCCTGGAGAAAGAGGGGCTGGGATGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136552.8 |
||
| 3UTR-3UTR CCA 90 bp | GGACTAAGTTCTCAGAAAACGTCATCTTTGTCGAAGCTGAACACCACCCATCAGAGCCATGGCCACAGTTaGGAGCTGGGGACTTATGTC | + |
|
Preference number: 2 (lower is better) Translates to: GLSSQKTSSLSKLNTTHQSHGHS*ELGTYV Trigger: GACATAAGTCCCCAGCTCCCAACTGTGGCCATGGCT...CTGATGGGTGGTGTTCAGCTTCGACAAAGATGACGTTTTCTGAGAACTTAGTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038570.9 ENSMUST00000136552.8 |
||
| 3UTR-3UTR GCA 90 bp | ACAGGGTGCTCCCTTAAGATCCTCTGTCACCTCTGTCCTGTCTTCCCAATTCTGACAGCCAGTCATGCCTaGTTTTATGCAACTAAGCCA | + |
|
Preference number: 2 (lower is better) Translates to: TGCSLKILCHLCPVFPILTASHA*FYATKP Trigger: TGGCTTAGTTGCATAAAAGCAGGCATGACTGGCTGT...CAGAATTGGGAAGACAGGACAGAGGTGACAGAGGATCTTAAGGGAGCACCCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038570.9 |
||
| 3UTR-3UTR GCA 90 bp | ATCAGAAGTCTTCCAGAGTTCAGAGAAAACTGTGCCAGGTGGCCTAGAAGCGCCACAGCCAGTCATGCCTaGTTTTATGCAACTAAGCCA | + |
|
Preference number: 2 (lower is better) Translates to: IRSLPEFRENCARWPRSATASHA*FYATKP Trigger: TGGCTTAGTTGCATAAAAGCAGGCATGACTGGCTGT...GGCGCTTCTAGGCCACCTGGCACAGTTTTCTCTGAACTCTGGAAGACTTCTGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038570.9 ENSMUST00000136552.8 |
||
| 3UTR-3UTR CCA 90 bp | AAGAGGAAAGTGTGTGAAAGCTTAAAAGGTTGCTATTCTGCAGCTTGGGAAGTTGAAAACTGTGCCAGGTaGCCTAGAAGCGCCTCCTTT | + |
|
Preference number: 2 (lower is better) Translates to: KRKVCESLKGCYSAAWEVENCAR*PRSASF Trigger: AAAGGAGGCGCTTCTAGGCCACCTGGCACAGTTTTC...AACTTCCCAAGCTGCAGAATAGCAACCTTTTAAGCTTTCACACACTTTCCTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038570.9 ENSMUST00000136552.8 |
||
| 3UTR-3UTR GCA 90 bp | TGGAACTATAGGTCTCAGCCTGTGTTTTTGCCTGTAGGAAGGAAGAAGTACAGAGAAAGCTTAAAAGGTTaGTATTCTGCAGCTTGGGAA | + |
|
Preference number: 2 (lower is better) Translates to: WNYRSQPVFLPVGRKKYRESLKG*YSAAWE Trigger: TTCCCAAGCTGCAGAATAGCAACCTTTTAAGCTTTC...TCTGTACTTCTTCCTTCCTACAGGCAAAAACACAGGCTGAGACCTATAGTTCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038570.9 |
||
| 3UTR GCA 72 bp | CAGCCCCTCAAGTGGGGCACCGAAGGGTGTGGCCTTTaGTCTGAATGGACACGGCTGCTGTCCCAGGAGGAG | + |
|
Preference number: 3 (lower is better) Translates to: QPLKWGTEGCGL*SEWTRLLSQEE Trigger: CTCCTCCTGGGACAGCAGCCGTGTCCATTCAGAGCAAAGGCCACACCCTTCGGTGCCCCACTTGAGGGGCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136552.8 |
||
| 3UTR TCA 72 bp | CCTCAAGTGGGGCACCGAAGGGTGTGGCCTTTGCTCTaGATGGACACGGCTGCTGTCCCAGGAGGAGGTAGT | + |
|
Preference number: 3 (lower is better) Translates to: PQVGHRRVWPLL*MDTAAVPGGGS Trigger: ACTACCTCCTCCTGGGACAGCAGCCGTGTCCATTCAGAGCAAAGGCCACACCCTTCGGTGCCCCACTTGAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136552.8 |
||
| 3UTR TCA 72 bp | AGCCTCCCACCGCCTCCTGGTTCTCCTGACGGTACTTaGTGGCCCGAGCCCAGTTGTTTCCCCATTCAATCA | + |
|
Preference number: 3 (lower is better) Translates to: SLPPPPGSPDGT*WPEPSCFPIQS Trigger: TGATTGAATGGGGAAACAACTGGGCTCGGGCCATCAAGTACCGTCAGGAGAACCAGGAGGCGGTGGGAGGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136552.8 |
||
| 3UTR TCA 72 bp | TGTGAAAAGAAGCCTCCCACCGCCTCCTGGTTCTCCTaGCGGTACTTGATGGCCCGAGCCCAGTTGTTTCCC | + |
|
Preference number: 3 (lower is better) Translates to: CEKKPPTASWFS*RYLMARAQLFP Trigger: GGGAAACAACTGGGCTCGGGCCATCAAGTACCGTCAGGAGAACCAGGAGGCGGTGGGAGGCTTCTTTTCACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136552.8 |
||
| 3UTR CCA 72 bp | AAGTGGGGCACCGAAGGGTGTGGCCTTTGCTCTGAATaGACACGGCTGCTGTCCCAGGAGGAGGTAGTAACA | + |
|
Preference number: 3 (lower is better) Translates to: KWGTEGCGLCSE*TRLLSQEEVVT Trigger: TGTTACTACCTCCTCCTGGGACAGCAGCCGTGTCCATTCAGAGCAAAGGCCACACCCTTCGGTGCCCCACTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136552.8 |
||
| 3UTR CCA 72 bp | AATCGGAGAACAGCACTTGAAAACCAGCCCCTCAAGTaGGGCACCGAAGGGTGTGGCCTTTGCTCTGAATGG | + |
|
Preference number: 3 (lower is better) Translates to: NRRTALENQPLK*GTEGCGLCSEW Trigger: CCATTCAGAGCAAAGGCCACACCCTTCGGTGCCCCACTTGAGGGGCTGGTTTTCAAGTGCTGTTCTCCGATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136552.8 |
||
| 3UTR TCA 72 bp | TCCAAGGGTCATAAGGACAAATCGGAGAACAGCACTTaGAAACCAGCCCCTCAAGTGGGGCACCGAAGGGTG | + |
|
Preference number: 3 (lower is better) Translates to: SKGHKDKSENST*KPAPQVGHRRV Trigger: CACCCTTCGGTGCCCCACTTGAGGGGCTGGTTTTCAAGTGCTGTTCTCCGATTTGTCCTTATGACCCTTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000136552.8 |
||
| 3UTR CCA 72 bp | ACAGCCAGTCATGCCTGCTTTTATGCAACTAAGCCATaGCCACAGTTGGGAGCTGGGGACTTATGTCCTGGA | + |
|
Preference number: 3 (lower is better) Translates to: TASHACFYATKP*PQLGAGDLCPG Trigger: TCCAGGACATAAGTCCCCAGCTCCCAACTGTGGCCATGGCTTAGTTGCATAAAAGCAGGCATGACTGGCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038570.9 ENSMUST00000136552.8 |
||
| 3UTR-3UTR CAA 90 bp | TTCATCCCAGCCCCTCTTTCTCCAGGCCGCATTTCGAGTCTCCTCCCGAGATTGATCATGGTTCCTGGCTaGAGTTTATATGTCCTCAGC | + |
|
Preference number: 3 (lower is better) Translates to: FIPAPLSPGRISSLLPRLIMVPG*SLYVLS Trigger: GCTGAGGACATATAAACTCAAGCCAGGAACCATGAT...CAATCTCGGGAGGAGACTCGAAATGCGGCCTGGAGAAAGAGGGGCTGGGATGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136552.8 |
||
| 3UTR-3UTR CAA 90 bp | CATTTCGAGTCTCCTCCCGAGATTGCAAATCTTTGTAGGCCCATAAGTGGTGTAAAGCCATGGCCACAGTaGGGAGCTGGGGACTTATGT | + |
|
Preference number: 3 (lower is better) Translates to: HFESPPEIANLCRPISGVKPWPQ*GAGDLC Trigger: ACATAAGTCCCCAGCTCCCAACTGTGGCCATGGCTT...TACACCACTTATGGGCCTACAAAGATTTGCAATCTCGGGAGGAGACTCGAAATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136552.8 |
||
| 3UTR GCA 72 bp | CCTTTCACACCATACCTCCTAACAGCCAGTCATGCCTaGTTTTATGCAACTAAGCCATGGCCACAGTTGGGA | + |
|
Preference number: 3 (lower is better) Translates to: PFTPYLLTASHA*FYATKPWPQLG Trigger: TCCCAACTGTGGCCATGGCTTAGTTGCATAAAAGCAGGCATGACTGGCTGTTAGGAGGTATGGTGTGAAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038570.9 ENSMUST00000136552.8 |
||
| 3UTR CCA 72 bp | AGAAAGGGAAGGAGGTGGAGGCAGTGCCAGCTTCACTaGAGAGGAGAAATCTTCAGAGGAATCATGATTCGT | + |
|
Preference number: 3 (lower is better) Translates to: RKGRRWRQCQLH*RGEIFRGIMIR Trigger: ACGAATCATGATTCCTCTGAAGATTTCTCCTCTCCAGTGAAGCTGGCACTGCCTCCACCTCCTTCCCTTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000136552.8 |
||
| 3UTR-3UTR CAA 90 bp | TATAGGTCTCAGCCTGTGTTTTTGCCTGTAGGAAGGAAGAAGTACAGAAGAGCTAAGCCATGGCCACAGTaGGGAGCTGGGGACTTATGT | + |
|
Preference number: 3 (lower is better) Translates to: YRSQPVFLPVGRKKYRRAKPWPQ*GAGDLC Trigger: ACATAAGTCCCCAGCTCCCAACTGTGGCCATGGCTT...AGCTCTTCTGTACTTCTTCCTTCCTACAGGCAAAAACACAGGCTGAGACCTATA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038570.9 |
||
| 3UTR TCA 72 bp | AGCTTCACTGGAGAGGAGAAATCTTCAGAGGAATCATaGTTCGTGACTCCATGTGTCGAACCAAGGGGACTG | + |
|
Preference number: 3 (lower is better) Translates to: SFTGEEKSSEES*FVTPCVEPRGL Trigger: CAGTCCCCTTGGTTCGACACATGGAGTCACGAATCATGATTCCTCTGAAGATTTCTCCTCTCCAGTGAAGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136552.8 |
||
| 3UTR TCA 72 bp | CCACCTACTGACACTGATAACTTCTGGATTTCCTCCTaGCTGTCACGACTTCAGACTTTATGGCAGTTCCAG | + |
|
Preference number: 3 (lower is better) Translates to: PPTDTDNFWISS*LSRLQTLWQFQ Trigger: CTGGAACTGCCATAAAGTCTGAAGTCGTGACAGTCAGGAGGAAATCCAGAAGTTATCAGTGTCAGTAGGTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038570.9 |
||
| 3UTR TCA 72 bp | CTGGAGAGGAGAAATCTTCAGAGGAATCATGATTCGTaGCTCCATGTGTCGAACCAAGGGGACTGTGTAGTA | + |
|
Preference number: 3 (lower is better) Translates to: LERRNLQRNHDS*LHVSNQGDCVV Trigger: TACTACACAGTCCCCTTGGTTCGACACATGGAGTCACGAATCATGATTCCTCTGAAGATTTCTCCTCTCCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136552.8 |
||
| 3UTR CCA 72 bp | GTGTGTGAAAGCTTAAAAGGTTGCTATTCTGCAGCTTaGGAAGTTAAGAACTTCTTCATCCAGCATGGGAGA | + |
|
Preference number: 3 (lower is better) Translates to: VCESLKGCYSAA*EVKNFFIQHGR Trigger: TCTCCCATGCTGGATGAAGAAGTTCTTAACTTCCCAAGCTGCAGAATAGCAACCTTTTAAGCTTTCACACAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038570.9 ENSMUST00000136552.8 |
||
| 3UTR GCA 72 bp | GATCTTAAGAGGAAAGTGTGTGAAAGCTTAAAAGGTTaGTATTCTGCAGCTTGGGAAGTTAAGAACTTCTTC | + |
|
Preference number: 3 (lower is better) Translates to: DLKRKVCESLKG*YSAAWEVKNFF Trigger: GAAGAAGTTCTTAACTTCCCAAGCTGCAGAATAGCAACCTTTTAAGCTTTCACACACTTTCCTCTTAAGATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038570.9 ENSMUST00000136552.8 |
||
| CDS-3UTR TCA 90 bp | TCCCAGGAGGAGGTAGTAACATGCAGAAAAGCGGCTCCACTCGGCCACCCAGACGTGCCGCTGCAGAGATaGTGCACAACCGCGGAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: SQEEVVTCRKAAPLGHPDVPLQR*CTTAEP Trigger: TGGCTCCGCGGTTGTGCATCATCTCTGCAGCGGCAC...GTCTGGGTGGCCGAGTGGAGCCGCTTTTCTGCATGTTACTACCTCCTCCTGGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136552.8 |
||
| CDS-3UTR TCA 90 bp | CCACTTGTGAAGGGTTCCTGCTTCAAGGCTGTCTCATGTACCCAGATCCTTCCCGCCTCCTGGTTCTCCTaGCGGTACTTGATGGCCCGA | + |
|
Preference number: 4 (lower is better) Translates to: PLVKGSCFKAVSCTQILPASWFS*RYLMAR Trigger: TCGGGCCATCAAGTACCGTCAGGAGAACCAGGAGGC...GGGAAGGATCTGGGTACATGAGACAGCCTTGAAGCAGGAACCCTTCACAAGTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038570.9 |
||
| CDS-3UTR TCA 90 bp | TCCCACCCTTTTCCTAGCCCTTTAAGTAGACTTCTGGACCACCTACTGACACTGGTGCCGCTGCAGAGATaGTGCACAACCGCGGAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: SHPFPSPLSRLLDHLLTLVPLQR*CTTAEP Trigger: TGGCTCCGCGGTTGTGCATCATCTCTGCAGCGGCAC...CAGTGTCAGTAGGTGGTCCAGAAGTCTACTTAAAGGGCTAGGAAAAGGGTGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038570.9 |
||
| CDS-3UTR GCA 90 bp | TGGGAAGTTAAGAACTTCTTCATCCAGCATGGGAGAGAGGTTAGCTGGGTACGGTGTACTGCCTGGTCCTaGTCCCCGTACCACGTGTTC | + |
|
Preference number: 4 (lower is better) Translates to: WEVKNFFIQHGREVSWVRCTAWS*SPYHVF Trigger: GAACACGTGGTACGGGGAGCAGGACCAGGCAGTACA...CCGTACCCAGCTAACCTCTCTCCCATGCTGGATGAAGAAGTTCTTAACTTCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038570.9 |
||
| 3UTR CAA 72 bp | CATGCCTGCTTTTATGCAACTAAGCCATGGCCACAGTaGGGAGCTGGGGACTTATGTCCTGGAGATGACGGA | + |
|
Preference number: 4 (lower is better) Translates to: HACFYATKPWPQ*GAGDLCPGDDG Trigger: TCCGTCATCTCCAGGACATAAGTCCCCAGCTCCCAACTGTGGCCATGGCTTAGTTGCATAAAAGCAGGCATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038570.9 ENSMUST00000136552.8 |
||
| CDS-3UTR TCA 90 bp | GACCTAGTGTTTCTGCAAAATGAGGGTTTGGGGGACAATGTCAAGAAGGGAAAGTGTTCATGCAGTCCATaGGGGCCGGGTAGCCACCTG | + |
|
Preference number: 4 (lower is better) Translates to: DLVFLQNEGLGDNVKKGKCSCSP*GPGSHL Trigger: CAGGTGGCTACCCGGCCCTCATGGACTGCATGAACA...CTTTCCCTTCTTGACATTGTCCCCCAAACCCTCATTTTGCAGAAACACTAGGTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038570.9 |
||
| CDS-3UTR TCA 90 bp | ATCAGAAGTCTTCCAGAGTTCAGAGAAAACTGTGCCAGGTGGCCTAGAAGCGCCGAGCTCTCCTATTTGTaGAAAGAAGCCTCCCACCGC | + |
|
Preference number: 4 (lower is better) Translates to: IRSLPEFRENCARWPRSAELSYL*KEASHR Trigger: GCGGTGGGAGGCTTCTTTTCACAAATAGGAGAGCTC...GGCGCTTCTAGGCCACCTGGCACAGTTTTCTCTGAACTCTGGAAGACTTCTGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038570.9 |
||
| CDS-3UTR GCA 90 bp | TCCATCTGTCTAGGAACAGGGTGCTCCCTTAAGATCCTCTGTCACCTCTGTCCTTGGACAGCAGCATCTTaGTCCGTTCCTTCCGGAACT | + |
|
Preference number: 4 (lower is better) Translates to: SICLGTGCSLKILCHLCPWTAAS*SVPSGT Trigger: AGTTCCGGAAGGAACGGAGCAAGATGCTGCTGTCCA...AGGACAGAGGTGACAGAGGATCTTAAGGGAGCACCCTGTTCCTAGACAGATGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038570.9 |
||
| CDS-3UTR CCA 90 bp | TCCCACCCTTTTCCTAGCCCTTTAAGTAGACTTCTGGACCACCTACTGACACTGGCAACTGGTTTCTCCTaGACAGCAGCATCTTGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: SHPFPSPLSRLLDHLLTLATGFS*TAASCS Trigger: GGAGCAAGATGCTGCTGTCCAGGAGAAACCAGTTGC...CAGTGTCAGTAGGTGGTCCAGAAGTCTACTTAAAGGGCTAGGAAAAGGGTGGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038570.9 |
||
| CDS-3UTR TCA 90 bp | TGTGAAGGGTTCCTGCTTCAAGGCTGTCTCATGTACCCAGATCCTTCCCACTCCTCATGGTTCCTGGCTTaGGTTTATATGTCCTCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: CEGFLLQGCLMYPDPSHSSWFLA*VYMSSA Trigger: AGCTGAGGACATATAAACTCAAGCCAGGAACCATGA...GGAGTGGGAAGGATCTGGGTACATGAGACAGCCTTGAAGCAGGAACCCTTCACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038570.9 |
||
| CDS-3UTR TCA 90 bp | TGGAACTATAGGTCTCAGCCTGTGTTTTTGCCTGTAGGAAGGAAGAAGTACAGATCTCCTGACGGTACTTaGTGGCCCGAGCCCAGTTGT | + |
|
Preference number: 4 (lower is better) Translates to: WNYRSQPVFLPVGRKKYRSPDGT*WPEPSC Trigger: ACAACTGGGCTCGGGCCATCAAGTACCGTCAGGAGA...TCTGTACTTCTTCCTTCCTACAGGCAAAAACACAGGCTGAGACCTATAGTTCCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038570.9 |
||
| CDS-3UTR GCA 90 bp | GACCTAGTGTTTCTGCAAAATGAGGGTTTGGGGGACAATGTCAAGAAGGGAAAGACCACGTGTTCCAGTTaGCCACAAGCGAGCAGGGAT | + |
|
Preference number: 4 (lower is better) Translates to: DLVFLQNEGLGDNVKKGKTTCSS*PQASRD Trigger: ATCCCTGCTCGCTTGTGGGCAACTGGAACACGTGGT...CTTTCCCTTCTTGACATTGTCCCCCAAACCCTCATTTTGCAGAAACACTAGGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038570.9 |
||
| 3UTR CAA 72 bp | GGTACGGACGGACTAAGTTCTCAGAAAACGTCATCTTaGTCGAAGCTGAACACCACCCATCAGAAGTCTTCC | + |
|
Preference number: 4 (lower is better) Translates to: GTDGLSSQKTSS*SKLNTTHQKSS Trigger: GGAAGACTTCTGATGGGTGGTGTTCAGCTTCGACAAAGATGACGTTTTCTGAGAACTTAGTCCGTCCGTACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000038570.9 ENSMUST00000136552.8 |
||
| CDS-3UTR CCA 90 bp | ACGGATCTTAAGAGGAAAGTGTGTGAAAGCTTAAAAGGTTGCTATTCTGCAGCTCATCCAGGTGCAGCTTaGGCAGTACAGCCTCCGTCA | + |
|
Preference number: 4 (lower is better) Translates to: TDLKRKVCESLKGCYSAAHPGAA*AVQPPS Trigger: TGACGGAGGCTGTACTGCCCAAGCTGCACCTGGATG...AGCTGCAGAATAGCAACCTTTTAAGCTTTCACACACTTTCCTCTTAAGATCCGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038570.9 |
||
| CDS-3UTR CCA 90 bp | AAGAGGAAAGTGTGTGAAAGCTTAAAAGGTTGCTATTCTGCAGCTTGGGAAGTTCATAGGTGTACTGCCTaGTCCTGCTCCCCGTACCAC | + |
|
Preference number: 4 (lower is better) Translates to: KRKVCESLKGCYSAAWEVHRCTA*SCSPYH Trigger: GTGGTACGGGGAGCAGGACCAGGCAGTACACCTATG...AACTTCCCAAGCTGCAGAATAGCAACCTTTTAAGCTTTCACACACTTTCCTCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038570.9 |
||
| CDS-3UTR CCA 90 bp | AAGAGGAAAGTGTGTGAAAGCTTAAAAGGTTGCTATTCTGCAGCTTGGGAAGTTTTCAATCATGGTTCCTaGCTTGAGTTTATATGTCCT | + |
|
Preference number: 4 (lower is better) Translates to: KRKVCESLKGCYSAAWEVFNHGS*LEFICP Trigger: AGGACATATAAACTCAAGCCAGGAACCATGATTGAA...AACTTCCCAAGCTGCAGAATAGCAACCTTTTAAGCTTTCACACACTTTCCTCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038570.9 |
||
| CDS-3UTR CAA 90 bp | GGCCTAGAAGCGCCTCCTTTCCAGGCTAGTCCACAGGAGAAAGGGAAGGAGGTGTCATCCAGGTGCAGCTaGGGCAGTACAGCCTCCGTC | + |
|
Preference number: 5 (lower is better) Translates to: GLEAPPFQASPQEKGKEVSSRCS*GSTASV Trigger: GACGGAGGCTGTACTGCCCAAGCTGCACCTGGATGA...CACCTCCTTCCCTTTCTCCTGTGGACTAGCCTGGAAAGGAGGCGCTTCTAGGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038570.9 |
||
| CDS-3UTR CAA 90 bp | GGCCTAGAAGCGCCTCCTTTCCAGGCTAGTCCACAGGAGAAAGGGAAGGAGGTGTTACTAGTCTCCTTCTaGGACAGCAGAGTGGAGTGG | + |
|
Preference number: 5 (lower is better) Translates to: GLEAPPFQASPQEKGKEVLLVSF*DSRVEW Trigger: CCACTCCACTCTGCTGTCCAAGAAGGAGACTAGTAA...CACCTCCTTCCCTTTCTCCTGTGGACTAGCCTGGAAAGGAGGCGCTTCTAGGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038570.9 |
||
| CDS-3UTR CAA 90 bp | ATCAGAAGTCTTCCAGAGTTCAGAGAAAACTGTGCCAGGTGGCCTAGAAGCGCCCTGGACAGCAGCATCTaGCTCCGTTCCTTCCGGAAC | + |
|
Preference number: 5 (lower is better) Translates to: IRSLPEFRENCARWPRSALDSSI*LRSFRN Trigger: GTTCCGGAAGGAACGGAGCAAGATGCTGCTGTCCAG...GGCGCTTCTAGGCCACCTGGCACAGTTTTCTCTGAACTCTGGAAGACTTCTGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038570.9 |
||
| CDS-3UTR CAA 90 bp | GGACTAAGTTCTCAGAAAACGTCATCTTTGTCGAAGCTGAACACCACCCATCAGAGTCTCCTCCCGAGATaGCAAATCTTTGTAGGCCCA | + |
|
Preference number: 5 (lower is better) Translates to: GLSSQKTSSLSKLNTTHQSLLPR*QIFVGP Trigger: TGGGCCTACAAAGATTTGCAATCTCGGGAGGAGACT...CTGATGGGTGGTGTTCAGCTTCGACAAAGATGACGTTTTCTGAGAACTTAGTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038570.9 |
||
| CDS-3UTR CAA 90 bp | ACTAAGTTCTCAGAAAACGTCATCTTTGTCGAAGCTGAACACCACCCATCAGAAATGGCCCGAGCCCAGTaGTTTCCCCATTCAATCATG | + |
|
Preference number: 5 (lower is better) Translates to: TKFSENVIFVEAEHHPSEMARAQ*FPHSIM Trigger: CATGATTGAATGGGGAAACAACTGGGCTCGGGCCAT...TTCTGATGGGTGGTGTTCAGCTTCGACAAAGATGACGTTTTCTGAGAACTTAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038570.9 |
||
| CDS-3UTR CAA 90 bp | GTTTTAACCACATTATGTAGGAAAACATGGATACGCCTCTCCATCTGTCTAGGAATCATGGTTCCTGGCTaGAGTTTATATGTCCTCAGC | + |
|
Preference number: 5 (lower is better) Translates to: VLTTLCRKTWIRLSICLGIMVPG*SLYVLS Trigger: GCTGAGGACATATAAACTCAAGCCAGGAACCATGAT...TCCTAGACAGATGGAGAGGCGTATCCATGTTTTCCTACATAATGTGGTTAAAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038570.9 |
||
| CDS CCA 72 bp | CAAAGAGGGAACGGAACCAGCTTCCTTCACTGTCCTTaGAATAGAAGCGCACAGCACCCGCAGCCGCGAGGT | + |
|
Preference number: 6 (lower is better) Translates to: QRGNGTSFLHCP*NRSAQHPQPRG Trigger: ACCTCGCGGCTGCGGGTGCTGTGCGCTTCTATTCCAAGGACAGTGAAGGAAGCTGGTTCCGTTCCCTCTTTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038570.9 |
||