RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NIPBL (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022141

Ensembl transcript IDs: ENSMUST00000052965.8

Found 316 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACAAAAATGTCTaGCCAACATTCCTTCCTTTGTTCCTGCATCCCAGGTTCCACTCT +
Preference number: 1 (lower is better)
Translates to: TFLLHNSEGSSHKNV*PTFLPLFLHPRFHS
Trigger: AGAGTGGAACCTGGGATGCAGGAACAAAGGAAGGAATGTTGGGCAGACATTTTTGTGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
3UTR-3UTR GCA 90 bp ATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTCCTTCCTTTGTTCCTaGATCCCAGGTTCCACTCTT +
Preference number: 2 (lower is better)
Translates to: IIYPGESAILQPGETTLPSFLCS*IPGSTL
Trigger: AAGAGTGGAACCTGGGATGCAGGAACAAAGGAAGGA...GGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
3UTR-3UTR GCA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAAGAGAGACGTTTCTGCTaGACAACAGCGAAGGGAGCT +
Preference number: 2 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQERRFC*TTAKGA
Trigger: AGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTC...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
3UTR-3UTR GCA 90 bp AACAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACACCGAGAGACGTTTCTaGTGCACAACAGCGAAGGGA +
Preference number: 2 (lower is better)
Translates to: NRINYISRRVCHFTAWRNTERRF*CTTAKG
Trigger: TCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGT...GTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
3UTR-3UTR CCA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTGGAAACTaGGCTAAGCTAAAGAAAGCC +
Preference number: 2 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQRFPGN*AKLKKA
Trigger: GGCTTTCTTTAGCTTAGCCCAGTTTCCAGGGAAGCG...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
3UTR GCA 72 bp CTGCACAACAGCGAAGGGAGCTCCCACAAAAATGTCTaGCCAACATTCCTTCCTTTGTTCCTGCATCCCAGG +
Preference number: 3 (lower is better)
Translates to: LHNSEGSSHKNV*PTFLPLFLHPR
Trigger: CCTGGGATGCAGGAACAAAGGAAGGAATGTTGGGCAGACATTTTTGTGGGAGCTCCCTTCGCTGTTGTGCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp CTGGAGAAACAACGCTTCCCTGGAAACTGGGCTAAGCTAAAGAAAGCCATCCGCGGCCATCGCGGCGCTTaGCCTCCGTCCAGGAGCCGC +
Preference number: 4 (lower is better)
Translates to: LEKQRFPGNWAKLKKAIRGHRGA*PPSRSR
Trigger: GCGGCTCCTGGACGGAGGCCAAGCGCCGCGATGGCC...GCGGATGGCTTTCTTTAGCTTAGCCCAGTTTCCAGGGAAGCGTTGTTTCTCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp GACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACAAAAATGTCTGCCCAACCCCAGAGCTTGTCTGTaGTGGCACAAACCGGCTGGA +
Preference number: 4 (lower is better)
Translates to: DVSAAQQRRELPQKCLPNPRACL*WHKPAG
Trigger: TCCAGCCGGTTTGTGCCACCACAGACAAGCTCTGGG...GTTGGGCAGACATTTTTGTGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCATGCTGCGACAAACACTaGGCAGCATTAAGTGGGCGG +
Preference number: 4 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPCCDKH*AALSGR
Trigger: CCGCCCACTTAATGCTGCTCAGTGTTTGTCGCAGCA...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp CTGGAGAAACAACGCTTCCCTGGAAACTGGGCTAAGCTAAAGAAAGCCATCCGCCTTCGAACCCTTGACTaGTCACCCCGATGTCGCTCT +
Preference number: 4 (lower is better)
Translates to: LEKQRFPGNWAKLKKAIRLRTLD*SPRCRS
Trigger: AGAGCGACATCGGGGTGATCAGTCAAGGGTTCGAAG...GCGGATGGCTTTCTTTAGCTTAGCCCAGTTTCCAGGGAAGCGTTGTTTCTCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp GACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACAAAAATGTCTGCCCAACACACTTGACTGGGTATaGAAGAACGCCTCCAGCACC +
Preference number: 4 (lower is better)
Translates to: DVSAAQQRRELPQKCLPNTLDWV*KNASST
Trigger: GGTGCTGGAGGCGTTCTTTCATACCCAGTCAAGTGT...GTTGGGCAGACATTTTTGTGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACTCCTCCTTCCGTCATaGGAGTGGCCACTTCTCCTA +
Preference number: 4 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPLLLPS*EWPLLL
Trigger: TAGGAGAAGTGGCCACTCCCATGACGGAAGGAGGAG...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp GACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACAAAAATGTCTGCCCAACCGGCCTTCACTCTTTTaGTTTGGAGTCTCAGGTCGT +
Preference number: 4 (lower is better)
Translates to: DVSAAQQRRELPQKCLPNRPSLF*FGVSGR
Trigger: ACGACCTGAGACTCCAAAGCAAAAGAGTGAAGGCCG...GTTGGGCAGACATTTTTGTGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp GACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACAAAAATGTCTGCCCAACCGCCCATCAGGTCTCTaGTTTAAGGCTTCAGCTCTT +
Preference number: 4 (lower is better)
Translates to: DVSAAQQRRELPQKCLPNRPSGL*FKASAL
Trigger: AAGAGCTGAAGCCTTAAAGCAGAGACCTGATGGGCG...GTTGGGCAGACATTTTTGTGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp GTGGGAGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCCTTCCAGTCTCTGTCTaGTTGTTGCATTCGCGTGTC +
Preference number: 4 (lower is better)
Translates to: VGVKTNRETFLLHNSEGSLPVSV*LLHSRV
Trigger: GACACGCGAATGCAACAAGCAGACAGAGACTGGAAG...GCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACTCCCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp GACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACAAAAATGTCTGCCCAACTGCTTGAGGTACAGCTaGATGATGGAGCTGCTCATC +
Preference number: 4 (lower is better)
Translates to: DVSAAQQRRELPQKCLPNCLRYS*MMELLI
Trigger: GATGAGCAGCTCCATCATGCAGCTGTACCTCAAGCA...GTTGGGCAGACATTTTTGTGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACTGAGCAGCATTAAGTaGGCGGTTTACGTCCTGTGG +
Preference number: 4 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPLSSIK*AVYVLW
Trigger: CCACAGGACGTAAACCGCCCACTTAATGCTGCTCAG...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp GTGGGAGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCGGATGGATGAGGCCTTaGTTCAGAGTCAGAGCAATG +
Preference number: 4 (lower is better)
Translates to: VGVKTNRETFLLHNSEGSGWMRP*FRVRAM
Trigger: CATTGCTCTGACTCTGAACCAAGGCCTCATCCATCC...GCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACTCCCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCATGGAAGTCCCATCCTTaGCGGCATACAGGGATCGTA +
Preference number: 4 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPWKSHP*RHTGIV
Trigger: TACGATCCCTGTATGCCGCCAAGGATGGGACTTCCA...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp CTGGAGAAACAACGCTTCCCTGGAAACTGGGCTAAGCTAAAGAAAGCCATCCGCCTCCCTTTCAATGGCTaGTTCTCGCTCTATCCGTTC +
Preference number: 4 (lower is better)
Translates to: LEKQRFPGNWAKLKKAIRLPFNG*FSLYPF
Trigger: GAACGGATAGAGCGAGAATCAGCCATTGAAAGGGAG...GCGGATGGCTTTCTTTAGCTTAGCCCAGTTTCCAGGGAAGCGTTGTTTCTCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCAGCGCGATGCATGATCTaGCCAGTTGTCTCAAGTTCT +
Preference number: 4 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPARCMI*PVVSSS
Trigger: AGAACTTGAGACAACTGGGCAGATCATGCATCGCGC...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp GTGGGAGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCACCCCCAGCCTCCTGTaGGTAAGAATCTTGTTTTCT +
Preference number: 4 (lower is better)
Translates to: VGVKTNRETFLLHNSEGSTPSLL*VRILFS
Trigger: AGAAAACAAGATTCTTACCCACAGGAGGCTGGGGGT...GCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACTCCCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACTGTTGATACCTGGTTaGGACTATGGACAAGCTGTG +
Preference number: 4 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPLLIPG*DYGQAV
Trigger: CACAGCTTGTCCATAGTCTCAACCAGGTATCAACAG...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp GACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACAAAAATGTCTGCCCAACTGTGATACCTGCTGCTaGTTCTGTACTACAGAAGTC +
Preference number: 4 (lower is better)
Translates to: DVSAAQQRRELPQKCLPNCDTCC*FCTTEV
Trigger: GACTTCTGTAGTACAGAATCAGCAGCAGGTATCACA...GTTGGGCAGACATTTTTGTGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCAATCTCCACAAGCTGCTaGTCAGCCTTGTTTCGCATA +
Preference number: 4 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPISTSC*SALFRI
Trigger: TATGCGAAACAAGGCTGATCAGCAGCTTGTGGAGAT...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp ATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCCCATCCACTGGACACTaGCGCCACTGCTGGTTCTCT +
Preference number: 4 (lower is better)
Translates to: IIYPGESAILQPGETTLPPSTGH*RHCWFS
Trigger: AGAGAACCAGCAGTGGCGTCAGTGTCCAGTGGATGG...GGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp GACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACAAAAATGTCTGCCCAACCGGCTTTCAGCTTTTTaGTTTGGGGTTTCAGGTCTT +
Preference number: 4 (lower is better)
Translates to: DVSAAQQRRELPQKCLPNRLSAF*FGVSGL
Trigger: AAGACCTGAAACCCCAAAGCAAAAAGCTGAAAGCCG...GTTGGGCAGACATTTTTGTGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCAGTGGTGAGGTACGGCTaGATAGTCATGGCATGTTTA +
Preference number: 4 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPVVRYG*IVMACL
Trigger: TAAACATGCCATGACTATGCAGCCGTACCTCACCAC...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp GACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACAAAAATGTCTGCCCAACTTCACTCTTTTGCTTTaGAGTCTCAGGTCGTCCATC +
Preference number: 4 (lower is better)
Translates to: DVSAAQQRRELPQKCLPNFTLLL*SLRSSI
Trigger: GATGGACGACCTGAGACTCCAAAGCAAAAGAGTGAA...GTTGGGCAGACATTTTTGTGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCAGCCTTGCTAGAATACTaGGGTCTACAGCAACAACCT +
Preference number: 4 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPALLEY*GLQQQP
Trigger: AGGTTGTTGCTGTAGACCCCAGTATTCTAGCAAGGC...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp GTGGGAGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCCTCTTCTGCTATTCGTaGATTAAAGAGGAGGCTCTT +
Preference number: 4 (lower is better)
Translates to: VGVKTNRETFLLHNSEGSLFCYS*IKEEAL
Trigger: AAGAGCCTCCTCTTTAATTCACGAATAGCAGAAGAG...GCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACTCCCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp GACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACAAAAATGTCTGCCCAACATCTTGAACTTCCTTTaGGAAGCGCTCCCTTTCAAT +
Preference number: 4 (lower is better)
Translates to: DVSAAQQRRELPQKCLPNILNFL*EALPFN
Trigger: ATTGAAAGGGAGCGCTTCTCAAAGGAAGTTCAAGAT...GTTGGGCAGACATTTTTGTGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp GTGGGAGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCGGGCTTATTGACTGTTaGGAGAAGGTCTTGAACAAA +
Preference number: 4 (lower is better)
Translates to: VGVKTNRETFLLHNSEGSGLIDC*EKVLNK
Trigger: TTTGTTCAAGACCTTCTCTCAACAGTCAATAAGCCC...GCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACTCCCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp CTGGAGAAACAACGCTTCCCTGGAAACTGGGCTAAGCTAAAGAAAGCCATCCGCCTGTTGACTTGTTACTaGACTGATGAACCAACAGCC +
Preference number: 4 (lower is better)
Translates to: LEKQRFPGNWAKLKKAIRLLTCY*TDEPTA
Trigger: GGCTGTTGGTTCATCAGTTCAGTAACAAGTCAACAG...GCGGATGGCTTTCTTTAGCTTAGCCCAGTTTCCAGGGAAGCGTTGTTTCTCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp GTGGGAGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCCTTCGGGATCATCACTaGCAAGGTTATCTTTCAGTT +
Preference number: 4 (lower is better)
Translates to: VGVKTNRETFLLHNSEGSLRDHH*QGYLSV
Trigger: AACTGAAAGATAACCTTGGCAGTGATGATCCCGAAG...GCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACTCCCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp TTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTCTTGCCAGGACGGCCTaGAACAAGACGGGTATATCG +
Preference number: 4 (lower is better)
Translates to: LYIQESLPFYSLEKQRFPLARTA*NKTGIS
Trigger: CGATATACCCGTCTTGTTGCAGGCCGTCCTGGCAAG...AGGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp TTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTAACGTTCGGACTCCTTaGCAGGACGGCCTGCAACAA +
Preference number: 4 (lower is better)
Translates to: LYIQESLPFYSLEKQRFPNVRTP*QDGLQQ
Trigger: TTGTTGCAGGCCGTCCTGGCAAGGAGTCCGAACGTT...AGGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp GACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACAAAAATGTCTGCCCAACTTGGTAATTGGAAGATaGAGGACTACTGTGCATGGA +
Preference number: 4 (lower is better)
Translates to: DVSAAQQRRELPQKCLPNLVIGR*RTTVHG
Trigger: TCCATGCACAGTAGTCCTGCATCTTCCAATTACCAA...GTTGGGCAGACATTTTTGTGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCAAGAGTCCACTCTTCCTaGCTGATGAAGATCAATGCT +
Preference number: 4 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPRVHSS*LMKINA
Trigger: AGCATTGATCTTCATCAGGCAGGAAGAGTGGACTCT...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp ATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCCGGCCTTCACTCTTTTaGTTTGGGGTTTCAGGCCGG +
Preference number: 4 (lower is better)
Translates to: IIYPGESAILQPGETTLPRPSLF*FGVSGR
Trigger: CCGGCCTGAAACCCCAAAGCAAAAGAGTGAAGGCCG...GGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp CTGGAGAAACAACGCTTCCCTGGAAACTGGGCTAAGCTAAAGAAAGCCATCCGCACTTTCATTCATCTGTaGTGCCAACTCCGTAGAGTC +
Preference number: 4 (lower is better)
Translates to: LEKQRFPGNWAKLKKAIRTFIHL*CQLRRV
Trigger: GACTCTACGGAGTTGGCAGCACAGATGAATGAAAGT...GCGGATGGCTTTCTTTAGCTTAGCCCAGTTTCCAGGGAAGCGTTGTTTCTCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACCCAAGGCACCAGTTTaGGGCCATCGCGGCGCTTGG +
Preference number: 4 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQPKAPV*GHRGAW
Trigger: CCAAGCGCCGCGATGGCCGCAAACTGGTGCCTTGGG...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp GACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACAAAAATGTCTGCCCAACAGGCACTTGATTTGCTaGAAGGAATGCTGTTTGTTC +
Preference number: 4 (lower is better)
Translates to: DVSAAQQRRELPQKCLPNRHLIC*KECCLF
Trigger: GAACAAACAGCATTCCTTCCAGCAAATCAAGTGCCT...GTTGGGCAGACATTTTTGTGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp GTGGGAGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCGGTCTTTGTACTTTaGACAGCAAATAGCGATGAC +
Preference number: 4 (lower is better)
Translates to: VGVKTNRETFLLHNSEGSSVFVL*TANSDD
Trigger: GTCATCGCTATTTGCTGTCCAAAGTACAAAGACCGA...GCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACTCCCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp CTGGAGAAACAACGCTTCCCTGGAAACTGGGCTAAGCTAAAGAAAGCCATCCGCACTATGGACAAGCTGTaGAACCAAATTGTCATCCCT +
Preference number: 4 (lower is better)
Translates to: LEKQRFPGNWAKLKKAIRTMDKL*NQIVIP
Trigger: AGGGATGACAATTTGGTTTCACAGCTTGTCCATAGT...GCGGATGGCTTTCTTTAGCTTAGCCCAGTTTCCAGGGAAGCGTTGTTTCTCCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp CTGGAGAAACAACGCTTCCCTGGAAACTGGGCTAAGCTAAAGAAAGCCATCCGCTGTAAAACAGGCACTTaGTTTGCTGGAAGGAATGCT +
Preference number: 4 (lower is better)
Translates to: LEKQRFPGNWAKLKKAIRCKTGT*FAGRNA
Trigger: AGCATTCCTTCCAGCAAATCAAGTGCCTGTTTTACA...GCGGATGGCTTTCTTTAGCTTAGCCCAGTTTCCAGGGAAGCGTTGTTTCTCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp GACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACAAAAATGTCTGCCCAACTTTGACTCCCCCAGCTaGTTTTCATTTGGTTTAGAT +
Preference number: 4 (lower is better)
Translates to: DVSAAQQRRELPQKCLPNFDSPS*FSFGLD
Trigger: ATCTAAACCAAATGAAAATCAGCTGGGGGAGTCAAA...GTTGGGCAGACATTTTTGTGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp GACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACAAAAATGTCTGCCCAACTGCTTTTGTGTTTTCTaGCCTGGTGTTGTTCTGTTT +
Preference number: 4 (lower is better)
Translates to: DVSAAQQRRELPQKCLPNCFCVF*PGVVLF
Trigger: AAACAGAACAACACCAGGTCAGAAAACACAAAAGCA...GTTGGGCAGACATTTTTGTGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp GTGGGAGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCCACAGTTTTGTCAGTTaGAAGCTTGTCCATTATACC +
Preference number: 4 (lower is better)
Translates to: VGVKTNRETFLLHNSEGSHSFVS*KLVHYT
Trigger: GGTATAATGGACAAGCTTTCAACTGACAAAACTGTG...GCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACTCCCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp GTGGGAGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCAAGTTCTTTTGCATaGTGTGTTGCGTCAGATGAT +
Preference number: 4 (lower is better)
Translates to: VGVKTNRETFLLHNSEGSSSSFA*CVASDD
Trigger: ATCATCTGACGCAACACATCATGCAAAAGAACTTGA...GCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACTCCCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp TTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTTCTCAGCGCGATGCATaGTCTGCCCAGTTGTCTCAA +
Preference number: 4 (lower is better)
Translates to: LYIQESLPFYSLEKQRFPSQRDA*SAQLSQ
Trigger: TTGAGACAACTGGGCAGATCATGCATCGCGCTGAGA...AGGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp GTGGGAGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCGACTTCAACAAATTTTaGAGGAGTTGCTCAAACCAG +
Preference number: 4 (lower is better)
Translates to: VGVKTNRETFLLHNSEGSDFNKF*RSCSNQ
Trigger: CTGGTTTGAGCAACTCCTTCAAAATTTGTTGAAGTC...GCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACTCCCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp GACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACAAAAATGTCTGCCCAACGTTTTGTTCTCGTTCTaGTTAAGTTCTTCTGTTGGG +
Preference number: 4 (lower is better)
Translates to: DVSAAQQRRELPQKCLPNVLFSF*LSSSVG
Trigger: CCCAACAGAAGAACTTAAGCAGAACGAGAACAAAAC...GTTGGGCAGACATTTTTGTGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp GACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACAAAAATGTCTGCCCAACTCCAGCGATAGTTTTTaGAGAACAACTACAGGCTTA +
Preference number: 4 (lower is better)
Translates to: DVSAAQQRRELPQKCLPNSSDSF*RTTTGL
Trigger: TAAGCCTGTAGTTGTTCTGCAAAAACTATCGCTGGA...GTTGGGCAGACATTTTTGTGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCATGTTCGAACGGCAATTaGATTTTCACCAAGAACTCG +
Preference number: 4 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPCSNGN*IFTKNS
Trigger: CGAGTTCTTGGTGAAAATGCAATTGCCGTTCGAACA...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCAATATGGACTAGGCACTaGGCTATTTTGTTGTGGCAT +
Preference number: 4 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPIWTRH*AILLWH
Trigger: ATGCCACAACAAAATAGCCCAGTGCCTAGTCCATAT...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCAAAGGAAAGTTTCACTTaGGTGTTCCATCAGTGGTAC +
Preference number: 4 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPKESFT*VFHQWY
Trigger: GTACCACTGATGGAACACCCAAGTGAAACTTTCCTT...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCAAGCGTAATGTCTATGTaGTGCATTATAAACAGCGGC +
Preference number: 4 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPSVMSM*CIINSG
Trigger: GCCGCTGTTTATAATGCACCACATAGACATTACGCT...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCAAGTCCAGTGTTTGTTTaGGATGAAAATGAACCCCTG +
Preference number: 4 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPSPVFV*DENEPL
Trigger: CAGGGGTTCATTTTCATCCCAAACAAACACTGGACT...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCAATGTGTTGTGTAACTTaGAGGATGGGAATATGGCAT +
Preference number: 4 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPMCCVT*RMGIWH
Trigger: ATGCCATATTCCCATCCTTCAAGTTACACAACACAT...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp TTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTGTAGAACCCGTCTCCTaGGAAGCTGGTCTATTACCT +
Preference number: 4 (lower is better)
Translates to: LYIQESLPFYSLEKQRFPVEPVS*EAGLLP
Trigger: AGGTAATAGACCAGCTTCTCAGGAGACGGGTTCTAC...AGGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACTGCAACCACATCAGTaGTGTTTAAAATCTTCCTTG +
Preference number: 4 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPLQPHQ*CLKSSL
Trigger: CAAGGAAGATTTTAAACATCACTGATGTGGTTGCAG...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACACCATAGTATCTATTaGAACAGGCCCACACAAATT +
Preference number: 4 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPHHSIY*NRPTQI
Trigger: AATTTGTGTGGGCCTGTTTCAATAGATACTATGGTG...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCAAGGGATCGTAAAGTCTaGACAACTTTATTAGTCAGC +
Preference number: 4 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPRDRKV*TTLLVS
Trigger: GCTGACTAATAAAGTTGTTCAGACTTTACGATCCCT...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp GTGGGAGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCAGATTCTTCACTTCTTaGTCAAACATTAGACTCGGA +
Preference number: 4 (lower is better)
Translates to: VGVKTNRETFLLHNSEGSRFFTS*SNIRLG
Trigger: TCCGAGTCTAATGTTTGAGCAAGAAGTGAAGAATCT...GCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACTCCCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCAGTAATGTCTATGTGGTaGATTATAAACAGCGGCTCT +
Preference number: 4 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPVMSMW*IINSGS
Trigger: AGAGCCGCTGTTTATAATGCACCACATAGACATTAC...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCATTAAAGTCTAAGTACTaGCTTACGATGCTCCTCTTC +
Preference number: 4 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPLKSKY*LTMLLF
Trigger: GAAGAGGAGCATCGTAAGGCAGTACTTAGACTTTAA...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAAGCCGCTGTAGGAGCCTaGCATCCACTGGACACTGAC +
Preference number: 4 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQAAVGA*HPLDTD
Trigger: GTCAGTGTCCAGTGGATGGCAGGCTCCTACAGCGGC...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp ATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCACTCTGTGGGGCATATaGACTAGGCACTGGGCTATT +
Preference number: 4 (lower is better)
Translates to: IIYPGESAILQPGETTLPTLWGI*TRHWAI
Trigger: AATAGCCCAGTGCCTAGTCCATATGCCCCACAGAGT...GGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACTCAGGATGGTTTTCTaGTATAGACTTAAGACTTCC +
Preference number: 4 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPLRMVF*YRLKTS
Trigger: GGAAGTCTTAAGTCTATACCAGAAAACCATCCTGAG...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCAATGGAGAGAAAGTTTTaGGCTGTTCTCATAGCTGTT +
Preference number: 4 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPMERKF*AVLIAV
Trigger: AACAGCTATGAGAACAGCCCAAAACTTTCTCTCCAT...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCAAGATCAAAATCAAAATaGCGGCAAAGTGCTCCAACA +
Preference number: 4 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPRSKSK*RQSAPT
Trigger: TGTTGGAGCACTTTGCCGCCATTTTGATTTTGATCT...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp AACAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACGAGCCTGCCATCCACTaGACACTGACGCCACTGCTG +
Preference number: 4 (lower is better)
Translates to: NRINYISRRVCHFTAWRNEPAIH*TLTPLL
Trigger: CAGCAGTGGCGTCAGTGTCCAGTGGATGGCAGGCTC...GTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp CTGGAGAAACAACGCTTCCCTGGAAACTGGGCTAAGCTAAAGAAAGCCATCCGCCTTAAGGGAACTTCTTaGTTTCTCCTCTCTATCTTT +
Preference number: 4 (lower is better)
Translates to: LEKQRFPGNWAKLKKAIRLKGTS*FLLSIF
Trigger: AAAGATAGAGAGGAGAAATCAAGAAGTTCCCTTAAG...GCGGATGGCTTTCTTTAGCTTAGCCCAGTTTCCAGGGAAGCGTTGTTTCTCCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp CTGGAGAAACAACGCTTCCCTGGAAACTGGGCTAAGCTAAAGAAAGCCATCCGCCAAATCCTAGACCAATaGTGGCTTTTGTTTGTACTT +
Preference number: 4 (lower is better)
Translates to: LEKQRFPGNWAKLKKAIRQILDQ*WLLFVL
Trigger: AAGTACAAACAAAAGCCATCATTGGTCTAGGATTTG...GCGGATGGCTTTCTTTAGCTTAGCCCAGTTTCCAGGGAAGCGTTGTTTCTCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp ATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCATATGGCATGTATCCTaGAGGACTCTGTGGGGCATA +
Preference number: 4 (lower is better)
Translates to: IIYPGESAILQPGETTLPIWHVS*RTLWGI
Trigger: TATGCCCCACAGAGTCCTGCAGGATACATGCCATAT...GGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp TTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTCTTGATACCGATGCTTaGTGCATCTGCGGATGTGTT +
Preference number: 4 (lower is better)
Translates to: LYIQESLPFYSLEKQRFPLDTDA*CICGCV
Trigger: AACACATCCGCAGATGCAGCAAGCATCGGTATCAAG...AGGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACAGAGATTCTTCAGGTaGTGCTTTAACATAAGAAGT +
Preference number: 4 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPQRFFR*CFNIRS
Trigger: ACTTCTTATGTTAAAGCAGCACCTGAAGAATCTCTG...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACAGGACTACTGTGCATaGAATTCTGAGAAAGTTTAT +
Preference number: 4 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPQDYCA*NSEKVY
Trigger: ATAAACTTTCTCAGAATTCCATGCACAGTAGTCCTG...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp AACAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAGAGCTTGTCTGTGGTaGCACAAACCGGCTGGAGGG +
Preference number: 4 (lower is better)
Translates to: NRINYISRRVCHFTAWRNRACLW*HKPAGG
Trigger: CCCTCCAGCCGGTTTGTGCCACCACAGACAAGCTCT...GTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp TTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTCGCTCTCGCTCTGTTTaGACTCTGTCGTTTTGTTCT +
Preference number: 4 (lower is better)
Translates to: LYIQESLPFYSLEKQRFPRSRSV*TLSFCS
Trigger: AGAACAAAACGACAGAGTCCAAACAGAGCGAGAGCG...AGGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCATTCTTTGTCATTATGTaGAGTTGGAGTAAACCAGAG +
Preference number: 4 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPFFVIM*SWSKPE
Trigger: CTCTGGTTTACTCCAACTCCACATAATGACAAAGAA...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp TTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTTCGCATAGCAGGTTCTaGATCTGTTCCCATGGCAAT +
Preference number: 4 (lower is better)
Translates to: LYIQESLPFYSLEKQRFPSHSRF*ICSHGN
Trigger: ATTGCCATGGGAACAGATCCAGAACCTGCTATGCGA...AGGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAATGGTCTTCGAACCCTTaGCTGATCACCCCGATGTCG +
Preference number: 4 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQWSSNP*LITPMS
Trigger: CGACATCGGGGTGATCAGTCAAGGGTTCGAAGACCA...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp TTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTGCAGCTTTCTCGTTCTaGTCTTTTTCATCCTTGCCT +
Preference number: 4 (lower is better)
Translates to: LYIQESLPFYSLEKQRFPAAFSF*SFSSLP
Trigger: AGGCAAGGATGAAAAAGACCAGAACGAGAAAGCTGC...AGGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp AACAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACTATCGGCCCCTGTTGTaGTACCTGCTGCTGATTCTG +
Preference number: 4 (lower is better)
Translates to: NRINYISRRVCHFTAWRNYRPLL*YLLLIL
Trigger: CAGAATCAGCAGCAGGTATCACAACAGGGGCCGATA...GTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp ATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCCTCACCCCTGTCATCTaGTTTCTGTTTACTATCATG +
Preference number: 4 (lower is better)
Translates to: IIYPGESAILQPGETTLPLTPVI*FLFTIM
Trigger: CATGATAGTAAACAGAAATCAGATGACAGGGGTGAG...GGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp AACAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACTGGCCACTTCTCCTATaGTCCCCAGAGCTTCTTCTG +
Preference number: 4 (lower is better)
Translates to: NRINYISRRVCHFTAWRNWPLLL*SPELLL
Trigger: CAGAAGAAGCTCTGGGGATCATAGGAGAAGTGGCCA...GTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp ATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCAAGACAGGCATCTGCTaGCTTTGTAACTCTTTCCAT +
Preference number: 4 (lower is better)
Translates to: IIYPGESAILQPGETTLPKTGIC*LCNSFH
Trigger: ATGGAAAGAGTTACAAAGTCAGCAGATGCCTGTCTT...GGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp ATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTTCAATCAAAGGGGCTaGATTTTCCGGCAAACACTT +
Preference number: 4 (lower is better)
Translates to: IIYPGESAILQPGETTLPFNQRG*IFRQTL
Trigger: AAGTGTTTGCCGGAAAATTCAGCCCCTTTGATTGAA...GGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp TTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTCAGGTCTTCCTGTTTTaGAACTTTCTTCCAGTCTCT +
Preference number: 4 (lower is better)
Translates to: LYIQESLPFYSLEKQRFPQVFLF*NFLPVS
Trigger: AGAGACTGGAAGAAAGTTGCAAAACAGGAAGACCTG...AGGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp ATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCGACTCCTTGAATGACTaGAATAGGTTACTACCGGAA +
Preference number: 4 (lower is better)
Translates to: IIYPGESAILQPGETTLPDSLND*NRLLPE
Trigger: TTCCGGTAGTAACCTATTGCAGTCATTCAAGGAGTC...GGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAATCAATGACCCTGAAGTaGCTCCTCCTCTATCCTCCC +
Preference number: 4 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQSMTLK*LLLYPP
Trigger: GGGAGGATAGAGGAGGAGGCACTTCAGGGTCATTGA...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp ATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTCTCTGTACTACTCTTaGAATCTGTGGTCGGTCTTT +
Preference number: 4 (lower is better)
Translates to: IIYPGESAILQPGETTLPSLYYS*NLWSVF
Trigger: AAAGACCGACCACAGATTGCAAGAGTAGTACAGAGA...GGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp TTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTACCTGGTTGAGACTATaGACAAGCTGTGAAACCAAA +
Preference number: 4 (lower is better)
Translates to: LYIQESLPFYSLEKQRFPTWLRL*TSCETK
Trigger: TTTGGTTTCACAGCTTGTCCATAGTCTCAACCAGGT...AGGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp TTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTCAGACAAACACTTCATaGCTTTTGTTCGAACGGCAA +
Preference number: 4 (lower is better)
Translates to: LYIQESLPFYSLEKQRFPQTNTS*LLFERQ
Trigger: TTGCCGTTCGAACAAAAGCCATGAAGTGTTTGTCTG...AGGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAAACATTCAGGGCGAAGTaGCGCACACTTGACTGGGTA +
Preference number: 4 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQTFRAK*RTLDWV
Trigger: TACCCAGTCAAGTGTGCGCCACTTCGCCCTGAATGT...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp TTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTCTGGATCTGTTCCCATaGCAATTAAGTATGGAACAC +
Preference number: 4 (lower is better)
Translates to: LYIQESLPFYSLEKQRFPLDLFP*QLSMEH
Trigger: GTGTTCCATACTTAATTGCCATGGGAACAGATCCAG...AGGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp AACAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACGCTGGAGGGGCTATGTaGGATAGTGGTTTGTTGGTA +
Preference number: 4 (lower is better)
Translates to: NRINYISRRVCHFTAWRNAGGAM*DSGLLV
Trigger: TACCAACAAACCACTATCTCACATAGCCCCTCCAGC...GTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp TTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTCTTCACAGGTTTATATaGGGAATCCTCTTCAGACTT +
Preference number: 4 (lower is better)
Translates to: LYIQESLPFYSLEKQRFPLHRFI*GILFRL
Trigger: AAGTCTGAAGAGGATTCCTCATATAAACCTGTGAAG...AGGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp AACAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACAGCGGCTCTTCCTaGGTCTGGTATGGAAAACAG +
Preference number: 4 (lower is better)
Translates to: NRINYISRRVCHFTAWRNNSGSS*VWYGKQ
Trigger: CTGTTTTCCATACCAGACTCAGGAAGAGCCGCTGTT...GTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp ATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCGAAACTTTGTTATCATaGATGTTTCTCAAGCCACCG +
Preference number: 4 (lower is better)
Translates to: IIYPGESAILQPGETTLPETLLS*MFLKPP
Trigger: CGGTGGCTTGAGAAACATCCATGATAACAAAGTTTC...GGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAAAGCGCTCCCTTTCAATaGCTGATTCTCGCTCTATCC +
Preference number: 4 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQSAPFQ*LILALS
Trigger: GGATAGAGCGAGAATCAGCCATTGAAAGGGAGCGCT...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp AACAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACCGTCTCCTGAGAAGCTaGTCTATTACCTCCTGTAGC +
Preference number: 4 (lower is better)
Translates to: NRINYISRRVCHFTAWRNRLLRS*SITSCS
Trigger: GCTACAGGAGGTAATAGACCAGCTTCTCAGGAGACG...GTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp TTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTCTGTTTGTTGTCATTTaGTTTTGTGTCACACGGTCT +
Preference number: 4 (lower is better)
Translates to: LYIQESLPFYSLEKQRFPLFVVI*FCVTRS
Trigger: AGACCGTGTGACACAAAACCAAATGACAACAAACAG...AGGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp TTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTTTTCATTTCGCTTTTTaGAAGCTCAGGATCAGACTT +
Preference number: 4 (lower is better)
Translates to: LYIQESLPFYSLEKQRFPFHFAF*KLRIRL
Trigger: AAGTCTGATCCTGAGCTTTCAAAAAGCGAAATGAAA...AGGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAAAGGACTGTCTGGTCTTaGTTTTTGTTCCCCAGAAGG +
Preference number: 4 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQRTVWS*FLFPRR
Trigger: CCTTCTGGGGAACAAAAATCAAGACCAGACAGTCCT...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp ATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCCAAAGTGGAAAGCTTTaGTCCATCCTGAATATTCTT +
Preference number: 4 (lower is better)
Translates to: IIYPGESAILQPGETTLPQSGKL*SILNIL
Trigger: AAGAATATTCAGGATGGATCAAAGCTTTCCACTTTG...GGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp TTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTGTTGAGAGAAGGTCTTaGACAAAGTTTTCAAAAAGC +
Preference number: 4 (lower is better)
Translates to: LYIQESLPFYSLEKQRFPVERRS*TKFSKS
Trigger: GCTTTTTGAAAACTTTGTTCAAGACCTTCTCTCAAC...AGGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGTTCTATAGACCCTTaGTCCATCTTGCTGGTGACA +
Preference number: 4 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQRSIDP*SILLVT
Trigger: TGTCACCAGCAAGATGGATCAAGGGTCTATAGAACG...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp TTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTAGGTTATCAACAAGTTaGGTACAAGCTTTCTTCACA +
Preference number: 4 (lower is better)
Translates to: LYIQESLPFYSLEKQRFPRLSTS*VQAFFT
Trigger: TGTGAAGAAAGCTTGTACTCAACTTGTTGATAACCT...AGGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp ATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTCCCTCCTATTTTCATaGCTATGTTTTGGAGTTTCA +
Preference number: 4 (lower is better)
Translates to: IIYPGESAILQPGETTLPSLLFS*LCFGVS
Trigger: TGAAACTCCAAAACATAGGCATGAAAATAGGAGGGA...GGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp ATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCACCATGAAATCATTTTaGGTACTACACTTAGTGGTG +
Preference number: 4 (lower is better)
Translates to: IIYPGESAILQPGETTLPTMKSF*VLHLVV
Trigger: CACCACTAAGTGTAGTACGCAAAATGATTTCATGGT...GGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp TTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTAACATTAGACTCGGATaGTGTATAAAGGCAAATCCT +
Preference number: 4 (lower is better)
Translates to: LYIQESLPFYSLEKQRFPNIRLG*CIKANP
Trigger: AGGATTTGCCTTTATACAGCATCCGAGTCTAATGTT...AGGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp ATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCAGTCACTTCTGTTTTTaGTGTGTCATCAAAGAGGTT +
Preference number: 4 (lower is better)
Translates to: IIYPGESAILQPGETTLPSHFCF*CVIKEV
Trigger: AACCTCTTTGATGACACAGCAAAAACAGAAGTGACT...GGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp AACAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACTTCACCTTTTTGCTTTaGAGTTTCAGGCCGGCCTTC +
Preference number: 4 (lower is better)
Translates to: NRINYISRRVCHFTAWRNFTFLL*SFRPAF
Trigger: GAAGGCCGGCCTGAAACTCCAAAGCAAAAAGGTGAA...GTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp AACAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACTTCATGCCTATGTTTTaGAGTTTCAGGCCGGCCTTC +
Preference number: 4 (lower is better)
Translates to: NRINYISRRVCHFTAWRNFMPMF*SFRPAF
Trigger: GAAGGCCGGCCTGAAACTCCAAAACATAGGCATGAA...GTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp AACAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACGAGACTTCCGAGGTCTaGACACTTCTTCTTCACTCT +
Preference number: 4 (lower is better)
Translates to: NRINYISRRVCHFTAWRNETSEV*TLLLHS
Trigger: AGAGTGAAGAAGAAGTGTCCAGACCTCGGAAGTCTC...GTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp AACAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACCCAACAATATCTTCCTaGAGAACAGAAATGGGCGCA +
Preference number: 4 (lower is better)
Translates to: NRINYISRRVCHFTAWRNPTISS*RTEMGA
Trigger: TGCGCCCATTTCTGTTCTTCAGGAAGATATTGTTGG...GTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp ATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCAATTATATCATACATTaGAGCTTTCTCGTTCTGGTC +
Preference number: 4 (lower is better)
Translates to: IIYPGESAILQPGETTLPNYIIH*SFLVLV
Trigger: GACCAGAACGAGAAAGCTGCAATGTATGATATAATT...GGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp TTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTATCGTCATCACCAAATaGAGTAAAATCCATATCTTC +
Preference number: 4 (lower is better)
Translates to: LYIQESLPFYSLEKQRFPIVITK*SKIHIF
Trigger: GAAGATATGGATTTTACTGCATTTGGTGATGACGAT...AGGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp ATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTCAAGCAATGCTTTTTaGAATTGTTGGATCTCATCT +
Preference number: 4 (lower is better)
Translates to: IIYPGESAILQPGETTLPSSNAF*NCWISS
Trigger: AGATGAGATCCAACAATTGCAAAAAGCATTGCTTGA...GGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp AACAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAAGCAGCGAGGTAATTaGTTTGTTCCGAGCATTGGT +
Preference number: 4 (lower is better)
Translates to: NRINYISRRVCHFTAWRNKQRGN*FVPSIG
Trigger: ACCAATGCTCGGAACAAAGCAATTACCTCGCTGCTT...GTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp AACAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACTTGCTGGTCCATATCTaGAGATCTTACACGAGAAAG +
Preference number: 4 (lower is better)
Translates to: NRINYISRRVCHFTAWRNLLVHI*RSYTRK
Trigger: CTTTCTCGTGTAAGATCTTCAGATATGGACCAGCAA...GTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp AACAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAGTAATGGGTGTTTTTaGAGTCTGTCCTGGATACTG +
Preference number: 4 (lower is better)
Translates to: NRINYISRRVCHFTAWRNSNGCF*SLSWIL
Trigger: CAGTATCCAGGACAGACTTCAAAAACACCCATTACT...GTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp AACAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACCCTGAAGAACAGAAATaGGCGCATCATTACACTGTT +
Preference number: 4 (lower is better)
Translates to: NRINYISRRVCHFTAWRNPEEQK*AHHYTV
Trigger: AACAGTGTAATGATGCGCCCATTTCTGTTCTTCAGG...GTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp AACAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACTACTCTTGCAATCTGTaGTCGGTCTTTGTACTTTGG +
Preference number: 4 (lower is better)
Translates to: NRINYISRRVCHFTAWRNYSCNL*SVFVLW
Trigger: CCAAAGTACAAAGACCGACCACAGATTGCAAGAGTA...GTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp AACAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACTTCTATGTGATCTGTTaGTACCTGGTTGAGACTATG +
Preference number: 4 (lower is better)
Translates to: NRINYISRRVCHFTAWRNFYVIC*YLVETM
Trigger: CATAGTCTCAACCAGGTATCAACAGATCACATAGAA...GTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAATCTTTCAGTTCTATGTaGTCTGTTGATACCTGGTTG +
Preference number: 4 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQSFSSM*SVDTWL
Trigger: CAACCAGGTATCAACAGATCACATAGAACTGAAAGA...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp AACAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACATTACTCTCTGCTTATaGGTAGAACATTTAGCCCGT +
Preference number: 4 (lower is better)
Translates to: NRINYISRRVCHFTAWRNITLCL*VEHLAR
Trigger: ACGGGCTAAATGTTCTACTCATAAGCAGAGAGTAAT...GTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACCCATTGATGAAACCTaGAGAATTGTTGTGTCTGTA +
Preference number: 4 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQPIDET*RIVVSV
Trigger: TACAGACACAACAATTCTTCAGGTTTCATCAATGGG...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAATCATCTTTAATGTGCTaGACTGAGAAGGTGTGGTTT +
Preference number: 4 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQSSLMC*TEKVWF
Trigger: AAACCACACCTTCTCAGTTCAGCACATTAAAGATGA...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR GCA 90 bp AACAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACTGTCTCAAGTTCTTTTaGATGATGTGTTGCGTCAGA +
Preference number: 4 (lower is better)
Translates to: NRINYISRRVCHFTAWRNCLKFF*MMCCVR
Trigger: TCTGACGCAACACATCATGCAAAAGAACTTGAGACA...GTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp AACAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACTTCTGTTTACTATCATaGTCACGTCTTAGTGACTCC +
Preference number: 4 (lower is better)
Translates to: NRINYISRRVCHFTAWRNFCLLS*SRLSDS
Trigger: GGAGTCACTAAGACGTGACCATGATAGTAAACAGAA...GTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACCCCAACAAATAGCTTaGAAATTCGGCCTTATTATC +
Preference number: 4 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQPQQIA*KFGLII
Trigger: GATAATAAGGCCGAATTTCCAAGCTATTTGTTGGGG...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACACACGTTCACAAAGTaGCATGGTAGATTCAATTTC +
Preference number: 4 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQHTFTK*HGRFNF
Trigger: GAAATTGAATCTACCATGCCACTTTGTGAACGTGTG...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAAGAACAAGGTAAAGACTaGGACTGTAGAATTAAAGGT +
Preference number: 4 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQEQGKD*DCRIKG
Trigger: ACCTTTAATTCTACAGTCTCAGTCTTTACCTTGTTC...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR TCA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAATTTAATGTGCTGAACTaGGAAGGTGTGGTTTTGATA +
Preference number: 4 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQFNVLN*EGVVLI
Trigger: TATCAAAACCACACCTTCTCAGTTCAGCACATTAAA...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CCA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAATCTTTAATTAGCTTCTaGACATCATCCAGCGATAGT +
Preference number: 4 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQSLISF*TSSSDS
Trigger: ACTATCGCTGGATGATGTCCAGAAGCTAATTAAAGA...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS GCA 90 bp GCCATCGCGGCGCTTGGCCTCCGTCCAGGAGCCGCTGTAGGAGCCTaGCATCCACTGGACACTGACGCCACTGCTGGTTCTCTGTACTAC +
Preference number: 5 (lower is better)
Translates to: AIAALGLRPGAAVGA*HPLDTDATAGSLYY
Trigger: GTAGTACAGAGAACCAGCAGTGGCGTCAGTGTCCAGTGGATGGCAGGCTCCTACAGCGGCTCCTGGACGGAGGCCAAGCGCCGCGATGGC
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 90 bp CCTCCGTCCAGGAGCCGCTGTAGGAGCCTGCCATCCACTGGACACTaGCGCCACTGCTGGTTCTCTGTACTACTCTTGCAATCTGTGGTC +
Preference number: 5 (lower is better)
Translates to: PPSRSRCRSLPSTGH*RHCWFSVLLLQSVV
Trigger: GACCACAGATTGCAAGAGTAGTACAGAGAACCAGCAGTGGCGTCAGTGTCCAGTGGATGGCAGGCTCCTACAGCGGCTCCTGGACGGAGG
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 90 bp CCACCCGAGCTCCTCCTTCCGTCATGGGAGTGGCCACTTCTCCTATaGTCCCCAGAGCTTCTTCTGTCGCGCTCTTCGTATTCCCAAGCT +
Preference number: 5 (lower is better)
Translates to: PPELLLPSWEWPLLL*SPELLLSRSSYSQA
Trigger: AGCTTGGGAATACGAAGAGCGCGACAGAAGAAGCTCTGGGGATCATAGGAGAAGTGGCCACTCCCATGACGGAAGGAGGAGCTCGGGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp GACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACAAAAATGTCTGCCCAACCCGGCCTTCACTCTTTaGCTTTGGGGTTTCAGGCCG +
Preference number: 5 (lower is better)
Translates to: DVSAAQQRRELPQKCLPNPAFTL*LWGFRP
Trigger: CGGCCTGAAACCCCAAAGCAAAAGAGTGAAGGCCGG...GTTGGGCAGACATTTTTGTGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 90 bp ACCATTAATGCTGGCCTTGACCCATTTCCCGTAGAACCCGTCTCCTaGGAAGCTGGTCTATTACCTCCTGTAGCACCCCCAGCCTCCTGT +
Preference number: 5 (lower is better)
Translates to: TINAGLDPFPVEPVS*EAGLLPPVAPPASC
Trigger: ACAGGAGGCTGGGGGTGCTACAGGAGGTAATAGACCAGCTTCTCAGGAGACGGGTTCTACGGGAAATGGGTCAAGGCCAGCATTAATGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS GCA 90 bp ATGCTTTTCTCCCTGAAAACGTTCGGACTCCTTGCCAGGACGGCCTaGAACAAGACGGGTATATCGCCTTCGGGATCATCACTGCCAAGG +
Preference number: 5 (lower is better)
Translates to: MLFSLKTFGLLARTA*NKTGISPSGSSLPR
Trigger: CCTTGGCAGTGATGATCCCGAAGGCGATATACCCGTCTTGTTGCAGGCCGTCCTGGCAAGGAGTCCGAACGTTTTCAGGGAGAAAAGCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 90 bp AGAGCAATGACATTCAGGGCGAAGTGGCGCACACTTGACTGGGTATaGAAGAACGCCTCCAGCACCTGCTTGAGGTACAGCTGCATGATG +
Preference number: 5 (lower is better)
Translates to: RAMTFRAKWRTLDWV*KNASSTCLRYSCMM
Trigger: CATCATGCAGCTGTACCTCAAGCAGGTGCTGGAGGCGTTCTTTCATACCCAGTCAAGTGTGCGCCACTTCGCCCTGAATGTCATTGCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 90 bp GTTCAGAGTCAGAGCAATGACATTCAGGGCGAAGTGGCGCACACTTaGCTGGGTATGAAAGAACGCCTCCAGCACCTGCTTGAGGTACAG +
Preference number: 5 (lower is better)
Translates to: VQSQSNDIQGEVAHT*LGMKERLQHLLEVQ
Trigger: CTGTACCTCAAGCAGGTGCTGGAGGCGTTCTTTCATACCCAGTCAAGTGTGCGCCACTTCGCCCTGAATGTCATTGCTCTGACTCTGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CCA 90 bp GGCGGTTCCCGCGGATCATGGAGTATAGATGTGAGCACAGAGCACTaGAGGATTCATCTTGTCGGAAACCCCTTACAGGGTCTTTTAGGC +
Preference number: 5 (lower is better)
Translates to: GGSRGSWSIDVSTEH*RIHLVGNPLQGLLG
Trigger: GCCTAAAAGACCCTGTAAGGGGTTTCCGACAAGATGAATCCTCCAGTGCTCTGTGCTCACATCTATACTCCATGATCCGCGGGAACCGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGGCCATCGCGGCGCTaGGCCTCCGTCCAGGAGCCG +
Preference number: 5 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQRPSRR*ASVQEP
Trigger: CGGCTCCTGGACGGAGGCCAAGCGCCGCGATGGCCG...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp ATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCACCCAAGGCACCAGTTaGCGGCCATCGCGGCGCTTG +
Preference number: 5 (lower is better)
Translates to: IIYPGESAILQPGETTLPTQGTS*RPSRRL
Trigger: CAAGCGCCGCGATGGCCGCAAACTGGTGCCTTGGGT...GGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 90 bp ACTGCTGCCTCTCGAACACTAGTGGAGTTATCCATTAGTCGCCCATaGACTCCGCGCTGCATGTCAAGCCTTGCTAGAATACTGGGGTCT +
Preference number: 5 (lower is better)
Translates to: TAASRTLVELSISRP*TPRCMSSLARILGS
Trigger: AGACCCCAGTATTCTAGCAAGGCTTGACATGCAGCGCGGAGTTCATGGGCGACTAATGGATAACTCCACTAGTGTTCGAGAGGCAGCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS GCA 90 bp ATATCTGTTCTGCATGCTTTTCTCCCTGAAAACGTTCGGACTCCTTaGCAGGACGGCCTGCAACAAGACGGGTATATCGCCTTCGGGATC +
Preference number: 5 (lower is better)
Translates to: ISVLHAFLPENVRTP*QDGLQQDGYIAFGI
Trigger: GATCCCGAAGGCGATATACCCGTCTTGTTGCAGGCCGTCCTGGCAAGGAGTCCGAACGTTTTCAGGGAGAAAAGCATGCAGAACAGATAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp GACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACAAAAATGTCTGCCCAACCGGGTTTCTTCTCTGTaGATGGCTTTCCAGAATCCC +
Preference number: 5 (lower is better)
Translates to: DVSAAQQRRELPQKCLPNRVSSL*MAFQNP
Trigger: GGGATTCTGGAAAGCCATCAACAGAGAAGAAACCCG...GTTGGGCAGACATTTTTGTGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCAGGCCACTCGGGCTTATaGACTGTTGAGAGAAGGTCT +
Preference number: 5 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPGHSGL*TVERRS
Trigger: AGACCTTCTCTCAACAGTCAATAAGCCCGAGTGGCC...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CCA 90 bp GTCGCCCATGAACTCCGCGCTGCATGTCAAGCCTTGCTAGAATACTaGGGTCTACAGCAACAACCTCAGACAAACACTTCATGGCTTTTG +
Preference number: 5 (lower is better)
Translates to: VAHELRAACQALLEY*GLQQQPQTNTSWLL
Trigger: CAAAAGCCATGAAGTGTTTGTCTGAGGTTGTTGCTGTAGACCCCAGTATTCTAGCAAGGCTTGACATGCAGCGCGGAGTTCATGGGCGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp CTGGAGAAACAACGCTTCCCTGGAAACTGGGCTAAGCTAAAGAAAGCCATCCGCGCATCTGCGGATGTGTaGTGTAACTTGAAGGATGGG +
Preference number: 5 (lower is better)
Translates to: LEKQRFPGNWAKLKKAIRASADV*CNLKDG
Trigger: CCCATCCTTCAAGTTACACAACACATCCGCAGATGC...GCGGATGGCTTTCTTTAGCTTAGCCCAGTTTCCAGGGAAGCGTTGTTTCTCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACCGGCTTTCAGCTTTTaGCTTTGGGGTTTCAGGTCT +
Preference number: 5 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPPAFSF*LWGFRS
Trigger: AGACCTGAAACCCCAAAGCAAAAAGCTGAAAGCCGG...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp GACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACAAAAATGTCTGCCCAACGAGGACTGTCTGGTCTaGATTTTTGTTCCCCAGAAG +
Preference number: 5 (lower is better)
Translates to: DVSAAQQRRELPQKCLPNEDCLV*IFVPQK
Trigger: CTTCTGGGGAACAAAAATCAAGACCAGACAGTCCTC...GTTGGGCAGACATTTTTGTGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp GTGGGAGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCAGCGAGGTAATTGCTTaGTTCCGAGCATTGGTGCTA +
Preference number: 5 (lower is better)
Translates to: VGVKTNRETFLLHNSEGSSEVIA*FRALVL
Trigger: TAGCACCAATGCTCGGAACAAAGCAATTACCTCGCT...GCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACTCCCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 90 bp ATTCATCTTGTCGGAAACCCCTTACAGGGTCTTTTAGGCACGTGTTaGTCGCCTGTTGGACCTGGTAAGACATCTTCATACCAGCCACGG +
Preference number: 5 (lower is better)
Translates to: IHLVGNPLQGLLGTC*SPVGPGKTSSYQPR
Trigger: CCGTGGCTGGTATGAAGATGTCTTACCAGGTCCAACAGGCGATCAACACGTGCCTAAAAGACCCTGTAAGGGGTTTCCGACAAGATGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp TTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTGCCTCCAGCACCTGCTaGAGGTACAGCTGCATGATG +
Preference number: 5 (lower is better)
Translates to: LYIQESLPFYSLEKQRFPASSTC*RYSCMM
Trigger: CATCATGCAGCTGTACCTCAAGCAGGTGCTGGAGGC...AGGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp GTGGGAGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCACATCCTCCGTCAGTTaGGAATTAGCCATGTCACTT +
Preference number: 5 (lower is better)
Translates to: VGVKTNRETFLLHNSEGSTSSVS*ELAMSL
Trigger: AAGTGACATGGCTAATTCCAAACTGACGGAGGATGT...GCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACTCCCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 90 bp GCAGGTTCTGGATCTGTTCCCATGGCAATTAAGTATGGAACACACTaGACCGGATGGATGAGGCCTTGGTTCAGAGTCAGAGCAATGACA +
Preference number: 5 (lower is better)
Translates to: AGSGSVPMAIKYGTH*TGWMRPWFRVRAMT
Trigger: TGTCATTGCTCTGACTCTGAACCAAGGCCTCATCCATCCGGTTCAGTGTGTTCCATACTTAATTGCCATGGGAACAGATCCAGAACCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS GCA 90 bp GGACGGCCTGCAACAAGACGGGTATATCGCCTTCGGGATCATCACTaGCAAGGTTATCTTTCAGTTCTATGTGATCTGTTGATACCTGGT +
Preference number: 5 (lower is better)
Translates to: GRPATRRVYRLRDHH*QGYLSVLCDLLIPG
Trigger: ACCAGGTATCAACAGATCACATAGAACTGAAAGATAACCTTGGCAGTGATGATCCCGAAGGCGATATACCCGTCTTGTTGCAGGCCGTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS GCA 90 bp CATCCACTGGACACTGACGCCACTGCTGGTTCTCTGTACTACTCTTaGAATCTGTGGTCGGTCTTTGTACTTTGGACAGCAAATAGCGAT +
Preference number: 5 (lower is better)
Translates to: HPLDTDATAGSLYYS*NLWSVFVLWTANSD
Trigger: ATCGCTATTTGCTGTCCAAAGTACAAAGACCGACCACAGATTGCAAGAGTAGTACAGAGAACCAGCAGTGGCGTCAGTGTCCAGTGGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CCA 90 bp AGGATGGGAATATGGCATGTATCCTGCAGGACTCTGTGGGGCATATaGACTAGGCACTGGGCTATTTTGTTGTGGCATAAATCTGTTCCC +
Preference number: 5 (lower is better)
Translates to: RMGIWHVSCRTLWGI*TRHWAILLWHKSVP
Trigger: GGGAACAGATTTATGCCACAACAAAATAGCCCAGTGCCTAGTCCATATGCCCCACAGAGTCCTGCAGGATACATGCCATATTCCCATCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp GTGGGAGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCAGGCACTGGGCTATTTaGTTGTGGCATAAATCTGTT +
Preference number: 5 (lower is better)
Translates to: VGVKTNRETFLLHNSEGSRHWAI*LWHKSV
Trigger: AACAGATTTATGCCACAACAAAATAGCCCAGTGCCT...GCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACTCCCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp CTGGAGAAACAACGCTTCCCTGGAAACTGGGCTAAGCTAAAGAAAGCCATCCGCTGGAAGGAATGCTGTTaGTTCTTGCTGCGACAAACA +
Preference number: 5 (lower is better)
Translates to: LEKQRFPGNWAKLKKAIRWKECC*FLLRQT
Trigger: TGTTTGTCGCAGCAAGAACAAACAGCATTCCTTCCA...GCGGATGGCTTTCTTTAGCTTAGCCCAGTTTCCAGGGAAGCGTTGTTTCTCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp GACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACAAAAATGTCTGCCCAACAAACAGGCACTTGATTaGCTGGAAGGAATGCTGTTT +
Preference number: 5 (lower is better)
Translates to: DVSAAQQRRELPQKCLPNKQALD*LEGMLF
Trigger: AAACAGCATTCCTTCCAGCAAATCAAGTGCCTGTTT...GTTGGGCAGACATTTTTGTGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp ATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCCTGGTCTTCGAACCCTaGACTGATCACCCCGATGTC +
Preference number: 5 (lower is better)
Translates to: IIYPGESAILQPGETTLPLVFEP*TDHPDV
Trigger: GACATCGGGGTGATCAGTCAAGGGTTCGAAGACCAG...GGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp GACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACAAAAATGTCTGCCCAACTTGTTCGAACGGCAATaGCATTTTCACCAAGAACTC +
Preference number: 5 (lower is better)
Translates to: DVSAAQQRRELPQKCLPNLFERQ*HFHQEL
Trigger: GAGTTCTTGGTGAAAATGCAATTGCCGTTCGAACAA...GTTGGGCAGACATTTTTGTGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp GACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACAAAAATGTCTGCCCAACAACACTTCATGGCTTTaGTTCGAACGGCAATTGCAT +
Preference number: 5 (lower is better)
Translates to: DVSAAQQRRELPQKCLPNNTSWL*FERQLH
Trigger: ATGCAATTGCCGTTCGAACAAAAGCCATGAAGTGTT...GTTGGGCAGACATTTTTGTGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp CTGGAGAAACAACGCTTCCCTGGAAACTGGGCTAAGCTAAAGAAAGCCATCCGCACAGCTCACACAATGTaGTACTACAGTCATGCCGTA +
Preference number: 5 (lower is better)
Translates to: LEKQRFPGNWAKLKKAIRTAHTM*YYSHAV
Trigger: TACGGCATGACTGTAGTACAACATTGTGTGAGCTGT...GCGGATGGCTTTCTTTAGCTTAGCCCAGTTTCCAGGGAAGCGTTGTTTCTCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp GTGGGAGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCAGTCTGAATTTCGTTTaGACCTTCTCAATGACCCTG +
Preference number: 5 (lower is better)
Translates to: VGVKTNRETFLLHNSEGSSLNFV*TFSMTL
Trigger: CAGGGTCATTGAGAAGGTCAAAACGAAATTCAGACT...GCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACTCCCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp GTGGGAGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCATCTGTGGTCGGTCTTaGTACTTTGGACAGCAAATA +
Preference number: 5 (lower is better)
Translates to: VGVKTNRETFLLHNSEGSICGRS*YFGQQI
Trigger: TATTTGCTGTCCAAAGTACAAAGACCGACCACAGAT...GCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACTCCCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp CTGGAGAAACAACGCTTCCCTGGAAACTGGGCTAAGCTAAAGAAAGCCATCCGCTTCTCTGTACTACTCTaGCAATCTGTGGTCGGTCTT +
Preference number: 5 (lower is better)
Translates to: LEKQRFPGNWAKLKKAIRFSVLL*QSVVGL
Trigger: AAGACCGACCACAGATTGCAAGAGTAGTACAGAGAA...GCGGATGGCTTTCTTTAGCTTAGCCCAGTTTCCAGGGAAGCGTTGTTTCTCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CCA 90 bp TCATCAAAGAGGTTGAGTAAAGAAATAAGAAAGGCGCGTCTGTGTTaGCGGTTCCCGCGGATCATGGAGTATAGATGTGAGCACAGAGCA +
Preference number: 5 (lower is better)
Translates to: SSKRLSKEIRKARLC*RFPRIMEYRCEHRA
Trigger: TGCTCTGTGCTCACATCTATACTCCATGATCCGCGGGAACCGCCAACACAGACGCGCCTTTCTTATTTCTTTACTCAACCTCTTTGATGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CCA 90 bp GACACTGACGCCACTGCTGGTTCTCTGTACTACTCTTGCAATCTGTaGTCGGTCTTTGTACTTTGGACAGCAAATAGCGATGACATCCAT +
Preference number: 5 (lower is better)
Translates to: DTDATAGSLYYSCNL*SVFVLWTANSDDIH
Trigger: ATGGATGTCATCGCTATTTGCTGTCCAAAGTACAAAGACCGACCACAGATTGCAAGAGTAGTACAGAGAACCAGCAGTGGCGTCAGTGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp ATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCATCTGTTCCCAGAGCTaGTCTGTGGTGGCACAAACC +
Preference number: 5 (lower is better)
Translates to: IIYPGESAILQPGETTLPICSQS*SVVAQT
Trigger: GGTTTGTGCCACCACAGACAAGCTCTGGGAACAGAT...GGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp GTGGGAGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCGGAGATGTCATAATGTaGATAGTTGTAAGACAGGCA +
Preference number: 5 (lower is better)
Translates to: VGVKTNRETFLLHNSEGSGDVIM*IVVRQA
Trigger: TGCCTGTCTTACAACTATCAACATTATGACATCTCC...GCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACTCCCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCATTGTCTCAAGTTCTTTaGCATGATGTGTTGCGTCAG +
Preference number: 5 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPLSQVL*HDVLRQ
Trigger: CTGACGCAACACATCATGCAAAAGAACTTGAGACAA...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp GTGGGAGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCCAAATTTTGAAGGAGTaGCTCAAACCAGTCATATCC +
Preference number: 5 (lower is better)
Translates to: VGVKTNRETFLLHNSEGSQILKE*LKPVIS
Trigger: GGATATGACTGGTTTGAGCAACTCCTTCAAAATTTG...GCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACTCCCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp CTGGAGAAACAACGCTTCCCTGGAAACTGGGCTAAGCTAAAGAAAGCCATCCGCAACCCAGCATATTTTTaGTCTATCTCCACAAGCTGC +
Preference number: 5 (lower is better)
Translates to: LEKQRFPGNWAKLKKAIRNPAYF*SISTSC
Trigger: GCAGCTTGTGGAGATAGACAAAAAATATGCTGGGTT...GCGGATGGCTTTCTTTAGCTTAGCCCAGTTTCCAGGGAAGCGTTGTTTCTCCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACAGGAAGTCCAGTGTTaGTTTGGGATGAAAATGAAC +
Preference number: 5 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPQEVQC*FGMKMN
Trigger: GTTCATTTTCATCCCAAACAAACACTGGACTTCCTG...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp ATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCGCTTTGTTCCGAGCATaGGTGCTAGCTGACACCTCT +
Preference number: 5 (lower is better)
Translates to: IIYPGESAILQPGETTLPALFRA*VLADTS
Trigger: AGAGGTGTCAGCTAGCACCAATGCTCGGAACAAAGC...GGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CCA 90 bp GCTTATCCTTATCTTGAACTTCCTTTGAGAAGCGCTCCCTTTCAATaGCTGATTCTCGCTCTATCCGTTCAATTTCTGCCAACGCGTCCA +
Preference number: 5 (lower is better)
Translates to: AYPYLELPLRSAPFQ*LILALSVQFLPTRP
Trigger: TGGACGCGTTGGCAGAAATTGAACGGATAGAGCGAGAATCAGCCATTGAAAGGGAGCGCTTCTCAAAGGAAGTTCAAGATAAGGATAAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CCA 90 bp AACTGTGCTACGCTTGCGTTTGTTCATTTTCACACGTTCACAAAGTaGCATGGTAGATTCAATTTCTGCCAGGAGCTCAGGGGGCAATTC +
Preference number: 5 (lower is better)
Translates to: NCATLAFVHFHTFTK*HGRFNFCQELRGQF
Trigger: GAATTGCCCCCTGAGCTCCTGGCAGAAATTGAATCTACCATGCCACTTTGTGAACGTGTGAAAATGAACAAACGCAAGCGTAGCACAGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp CTGGAGAAACAACGCTTCCCTGGAAACTGGGCTAAGCTAAAGAAAGCCATCCGCCTAACTTACTTTCATTaGATTTTGACTCCCCCAGCT +
Preference number: 5 (lower is better)
Translates to: LEKQRFPGNWAKLKKAIRLTYFH*ILTPPA
Trigger: AGCTGGGGGAGTCAAAATCAAATGAAAGTAAGTTAG...GCGGATGGCTTTCTTTAGCTTAGCCCAGTTTCCAGGGAAGCGTTGTTTCTCCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp GACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACAAAAATGTCTGCCCAACTGTTGTCATTTGGTTTaGTGTCACACGGTCTATTTT +
Preference number: 5 (lower is better)
Translates to: DVSAAQQRRELPQKCLPNCCHLV*CHTVYF
Trigger: AAAATAGACCGTGTGACACAAAACCAAATGACAACA...GTTGGGCAGACATTTTTGTGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp GTGGGAGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTTTTCTGACCTGGTGTaGTTCTGTTTGTTGTCATTT +
Preference number: 5 (lower is better)
Translates to: VGVKTNRETFLLHNSEGSFSDLV*FCLLSF
Trigger: AAATGACAACAAACAGAACAACACCAGGTCAGAAAA...GCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACTCCCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp GACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACAAAAATGTCTGCCCAACTTTATTAGTATCTCCTaGTTTTACACGAGGACTGTC +
Preference number: 5 (lower is better)
Translates to: DVSAAQQRRELPQKCLPNFISIS*FYTRTV
Trigger: GACAGTCCTCGTGTAAAACAAGGAGATACTAATAAA...GTTGGGCAGACATTTTTGTGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp GACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCACAAAAATGTCTGCCCAACTTACCCTCTGTCCTTTaGTCATCTTTACTATTTGGT +
Preference number: 5 (lower is better)
Translates to: DVSAAQQRRELPQKCLPNLPSVL*SSLLFG
Trigger: ACCAAATAGTAAAGATGACAAAAGGACAGAGGGTAA...GTTGGGCAGACATTTTTGTGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCATTAACTGTGCTACGCTaGCGTTTGTTCATTTTCACA +
Preference number: 5 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPLTVLR*RLFIFT
Trigger: TGTGAAAATGAACAAACGCAAGCGTAGCACAGTTAA...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp CTGGAGAAACAACGCTTCCCTGGAAACTGGGCTAAGCTAAAGAAAGCCATCCGCCTTTTGCATGATGTGTaGCGTCAGATGATTCTTCAT +
Preference number: 5 (lower is better)
Translates to: LEKQRFPGNWAKLKKAIRLLHDV*RQMILH
Trigger: ATGAAGAATCATCTGACGCAACACATCATGCAAAAG...GCGGATGGCTTTCTTTAGCTTAGCCCAGTTTCCAGGGAAGCGTTGTTTCTCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp ATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCCGTGTTGATCGCCTGTaGGACCTGGTAAGACATCTT +
Preference number: 5 (lower is better)
Translates to: IIYPGESAILQPGETTLPRVDRL*DLVRHL
Trigger: AAGATGTCTTACCAGGTCCAACAGGCGATCAACACG...GGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAAAAACGTTCGGACTCCTaGCCAGGACGGCCTGCAACA +
Preference number: 5 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQKRSDS*PGRPAT
Trigger: TGTTGCAGGCCGTCCTGGCAAGGAGTCCGAACGTTT...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCAACAGGCTTAGCTCCTTaGTTTAGATCTTCAACTAAT +
Preference number: 5 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPTGLAP*FRSSTN
Trigger: ATTAGTTGAAGATCTAAACAAAGGAGCTAAGCCTGT...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp AGTAAAAACGAACCGAGAGACGTTTCTGCTGCACAACAGCGAAGGGAGCTCCCAACAAAGTGGAAAGCTTaGATCCATCCTGAATATTCT +
Preference number: 5 (lower is better)
Translates to: SKNEPRDVSAAQQRRELPTKWKA*IHPEYS
Trigger: AGAATATTCAGGATGGATCAAAGCTTTCCACTTTGT...TGGGAGCTCCCTTCGCTGTTGTGCAGCAGAAACGTCTCTCGGTTCGTTTTTACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp CTGGAGAAACAACGCTTCCCTGGAAACTGGGCTAAGCTAAAGAAAGCCATCCGCATCAAGCAATGCTTTTaGCAATTGTTGGATCTCATC +
Preference number: 5 (lower is better)
Translates to: LEKQRFPGNWAKLKKAIRIKQCF*QLLDLI
Trigger: GATGAGATCCAACAATTGCAAAAAGCATTGCTTGAT...GCGGATGGCTTTCTTTAGCTTAGCCCAGTTTCCAGGGAAGCGTTGTTTCTCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp CTGGAGAAACAACGCTTCCCTGGAAACTGGGCTAAGCTAAAGAAAGCCATCCGCATGTTTAACCATGAGTaGGGGTCTTATTTTGCTGAA +
Preference number: 5 (lower is better)
Translates to: LEKQRFPGNWAKLKKAIRMFNHE*GSYFAE
Trigger: TTCAGCAAAATAAGACCCCAACTCATGGTTAAACAT...GCGGATGGCTTTCTTTAGCTTAGCCCAGTTTCCAGGGAAGCGTTGTTTCTCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACTGGAAGTCCCATCCTaGGCGGCATACAGGGATCGT +
Preference number: 5 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQLEVPS*AAYRDR
Trigger: ACGATCCCTGTATGCCGCCAAGGATGGGACTTCCAG...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp ATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTCTGTTGATACCTGGTaGAGACTATGGACAAGCTGT +
Preference number: 5 (lower is better)
Translates to: IIYPGESAILQPGETTLPSVDTW*RLWTSC
Trigger: ACAGCTTGTCCATAGTCTCAACCAGGTATCAACAGA...GGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp TTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTCACTGGGCTATTTTGTaGTGGCATAAATCTGTTCCC +
Preference number: 5 (lower is better)
Translates to: LYIQESLPFYSLEKQRFPHWAIL*WHKSVP
Trigger: GGGAACAGATTTATGCCACAACAAAATAGCCCAGTG...AGGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACCGGCCTTCACTCTTTaGCTTTGGAGTCTCAGGTCG +
Preference number: 5 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQPAFTL*LWSLRS
Trigger: CGACCTGAGACTCCAAAGCAAAAGAGTGAAGGCCGG...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 90 bp AAGATATCTGGAGGAACATCTCGAGGTGATGAACAAGGTAAAGACTaGGACTGTAGAATTAAAGGTGGTCTTGAGCCTTTAGGTGTTCCG +
Preference number: 5 (lower is better)
Translates to: KISGGTSRGDEQGKD*DCRIKGGLEPLGVP
Trigger: CGGAACACCTAAAGGCTCAAGACCACCTTTAATTCTACAGTCTCAGTCTTTACCTTGTTCATCACCTCGAGATGTTCCTCCAGATATCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CCA 90 bp TGGTTAGCTGAGTTGCCAGATAATGGACCAGAAACTTTGTTATCATaGATGTTTCTCAAGCCACCGGCAACAATAGGACTTGATACCGAT +
Preference number: 5 (lower is better)
Translates to: WLAELPDNGPETLLS*MFLKPPATIGLDTD
Trigger: ATCGGTATCAAGTCCTATTGTTGCCGGTGGCTTGAGAAACATCCATGATAACAAAGTTTCTGGTCCATTATCTGGCAACTCAGCTAACCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CCA 90 bp GGTTCTCTGTACTACTCTTGCAATCTGTGGTCGGTCTTTGTACTTTaGACAGCAAATAGCGATGACATCCATGACGTCAACACTTTCATT +
Preference number: 5 (lower is better)
Translates to: GSLYYSCNLWSVFVL*TANSDDIHDVNTFI
Trigger: AATGAAAGTGTTGACGTCATGGATGTCATCGCTATTTGCTGTCCAAAGTACAAAGACCGACCACAGATTGCAAGAGTAGTACAGAGAACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp TTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTATGCAGCATTCCTCATaGTTGAAGAATCGCCATCAT +
Preference number: 5 (lower is better)
Translates to: LYIQESLPFYSLEKQRFPMQHSS*LKNRHH
Trigger: ATGATGGCGATTCTTCAACAATGAGGAATGCTGCAT...AGGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp ATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTTTCAGGTCTTGCTTTaGTGTTTTCTGACCTGGTGT +
Preference number: 5 (lower is better)
Translates to: IIYPGESAILQPGETTLPFQVLL*CFLTWC
Trigger: ACACCAGGTCAGAAAACACAAAAGCAAGACCTGAAA...GGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp ATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCCCCCCAACAAATAGCTaGGAAATTCGGCCTTATTAT +
Preference number: 5 (lower is better)
Translates to: IIYPGESAILQPGETTLPPPTNS*EIRPYY
Trigger: ATAATAAGGCCGAATTTCCAAGCTATTTGTTGGGGG...GGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAAT
43% GC, longest homopolymer 8 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp TTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTACAGTCATGCCGTATTaGATGATCAGCTTCATCAGA +
Preference number: 5 (lower is better)
Translates to: LYIQESLPFYSLEKQRFPTVMPY*MISFIR
Trigger: TCTGATGAAGCTGATCATCAAATACGGCATGACTGT...AGGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGGATGGATGAGGCCTaGGTTCAGAGTCAGAGCAAT +
Preference number: 5 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQRMDEA*VQSQSN
Trigger: ATTGCTCTGACTCTGAACCAAGGCCTCATCCATCCG...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp AACAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACTCTTTTAGGCACGTGTaGATCGCCTGTTGGACCTGG +
Preference number: 5 (lower is better)
Translates to: NRINYISRRVCHFTAWRNSFRHV*IACWTW
Trigger: CCAGGTCCAACAGGCGATCAACACGTGCCTAAAAGA...GTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 90 bp TGCCAAGGTTATCTTTCAGTTCTATGTGATCTGTTGATACCTGGTTaGGACTATGGACAAGCTGTGAAACCAAATTGTCATCCCTACAGG +
Preference number: 5 (lower is better)
Translates to: CQGYLSVLCDLLIPG*DYGQAVKPNCHPYR
Trigger: CCTGTAGGGATGACAATTTGGTTTCACAGCTTGTCCATAGTCTCAACCAGGTATCAACAGATCACATAGAACTGAAAGATAACCTTGGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp ATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCCAATGCTTTTTGCAATaGTTGGATCTCATCTTCTCC +
Preference number: 5 (lower is better)
Translates to: IIYPGESAILQPGETTLPQCFLQ*LDLIFS
Trigger: GGAGAAGATGAGATCCAACAATTGCAAAAAGCATTG...GGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAATTTCTGTTTCCAGAGTaGTGTCACGGAACCACTGGG +
Preference number: 5 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQFLFPE*CHGTTG
Trigger: CCCAGTGGTTCCGTGACACAACTCTGGAAACAGAAA...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp AACAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACGCTGCATGTCAAGCCTaGCTAGAATACTGGGGTCTA +
Preference number: 5 (lower is better)
Translates to: NRINYISRRVCHFTAWRNAACQA*LEYWGL
Trigger: TAGACCCCAGTATTCTAGCAAGGCTTGACATGCAGC...GTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp ATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCCTTGTCATTGCTTCTTaGTCATTATGTGGAGTTGGA +
Preference number: 5 (lower is better)
Translates to: IIYPGESAILQPGETTLPLVIAS*SLCGVG
Trigger: TCCAACTCCACATAATGACAAAGAAGCAATGACAAG...GGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAAACTGGAGGATTCATCTaGTCGGAAACCCCTTACAGG +
Preference number: 5 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQTGGFI*SETPYR
Trigger: CCTGTAAGGGGTTTCCGACAAGATGAATCCTCCAGT...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp TTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTTTCCTCTCTTTCCTTTaGTCTTTTACCATAGACTCC +
Preference number: 5 (lower is better)
Translates to: LYIQESLPFYSLEKQRFPFLSFL*SFTIDS
Trigger: GGAGTCTATGGTAAAAGACAAAAGGAAAGAGAGGAA...AGGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 90 bp TCAGCGCGATGCATGATCTGCCCAGTTGTCTCAAGTTCTTTTGCATaGTGTGTTGCGTCAGATGATTCTTCATCTTTTTGTGATTTCATT +
Preference number: 5 (lower is better)
Translates to: SARCMICPVVSSSFA*CVASDDSSSFCDFI
Trigger: AATGAAATCACAAAAAGATGAAGAATCATCTGACGCAACACATCATGCAAAAGAACTTGAGACAACTGGGCAGATCATGCATCGCGCTGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp AACAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACGAATGCTGTTTGTTCTaGCTGCGACAAACACTGAGC +
Preference number: 5 (lower is better)
Translates to: NRINYISRRVCHFTAWRNECCLF*LRQTLS
Trigger: GCTCAGTGTTTGTCGCAGCAAGAACAAACAGCATTC...GTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp TTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTTCACAGTTTTGTCAGTaGAAAGCTTGTCCATTATAC +
Preference number: 5 (lower is better)
Translates to: LYIQESLPFYSLEKQRFPSQFCQ*KACPLY
Trigger: GTATAATGGACAAGCTTTCAACTGACAAAACTGTGA...AGGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp ATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACGCTTCCCTTTACCATAGACTCCTaGAATGACTGCAATAGGTTA +
Preference number: 5 (lower is better)
Translates to: IIYPGESAILQPGETTLPFTIDS*NDCNRL
Trigger: TAACCTATTGCAGTCATTCAAGGAGTCTATGGTAAA...GGGAAGCGTTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 90 bp TTTGATATCCTGTTTATGCTTAGACACATCGGGTTTCTTCTCTGTTaGTGGCTTTCCAGAATCCCTCCTATTTTCATGCCTATGTTTTGG +
Preference number: 5 (lower is better)
Translates to: FDILFMLRHIGFLLC*WLSRIPPIFMPMFW
Trigger: CCAAAACATAGGCATGAAAATAGGAGGGATTCTGGAAAGCCATCAACAGAGAAGAAACCCGATGTGTCTAAGCATAAACAGGATATCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp AACAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACGTGCTACGCTTGCGTTaGTTCATTTTCACACGTTCA +
Preference number: 5 (lower is better)
Translates to: NRINYISRRVCHFTAWRNVLRLR*FIFTRS
Trigger: TGAACGTGTGAAAATGAACAAACGCAAGCGTAGCAC...GTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAAGATGGAGAGAAAGTTTaGGGCTGTTCTCATAGCTGT +
Preference number: 5 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQDGEKV*GCSHSC
Trigger: ACAGCTATGAGAACAGCCCAAAACTTTCTCTCCATC...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 90 bp GGATGGTTTTCTGGTATAGACTTAAGACTTCCAACAATATCTTCCTaGAGAACAGAAATGGGCGCATCATTACACTGTTTGGTTTCTTCA +
Preference number: 5 (lower is better)
Translates to: GWFSGIDLRLPTISS*RTEMGASLHCLVSS
Trigger: TGAAGAAACCAAACAGTGTAATGATGCGCCCATTTCTGTTCTTCAGGAAGATATTGTTGGAAGTCTTAAGTCTATACCAGAAAACCATCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS GCA 90 bp CTTTCTGATTTTAATCGAGGTGAGTCAGATTTGATATCCTGTTTATaGTTAGACACATCGGGTTTCTTCTCTGTTGATGGCTTTCCAGAA +
Preference number: 5 (lower is better)
Translates to: LSDFNRGESDLISCL*LDTSGFFSVDGFPE
Trigger: TTCTGGAAAGCCATCAACAGAGAAGAAACCCGATGTGTCTAAGCATAAACAGGATATCAAATCTGACTCACCTCGATTAAAATCAGAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAAGATGTGTTGTGTAACTaGAAGGATGGGAATATGGCA +
Preference number: 5 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQDVLCN*KDGNMA
Trigger: TGCCATATTCCCATCCTTCAAGTTACACAACACATC...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAATATCTTGAACTTCCTTaGAGAAGCGCTCCCTTTCAA +
Preference number: 5 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQYLELP*RSAPFQ
Trigger: TTGAAAGGGAGCGCTTCTCAAAGGAAGTTCAAGATA...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAATCTGTTTGTTGTCATTaGGTTTTGTGTCACACGGTC +
Preference number: 5 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQSVCCH*VLCHTV
Trigger: GACCGTGTGACACAAAACCAAATGACAACAAACAGA...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp AACAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAGGACTTTCACAGTTTaGTCAGTTGAAAGCTTGTCC +
Preference number: 5 (lower is better)
Translates to: NRINYISRRVCHFTAWRNRTFTV*SVESLS
Trigger: GGACAAGCTTTCAACTGACAAAACTGTGAAAGTCCT...GTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS GCA 90 bp TCTCTATCTTTAATTAGCTTCTGGACATCATCCAGCGATAGTTTTTaGAGAACAACTACAGGCTTAGCTCCTTTGTTTAGATCTTCAACT +
Preference number: 5 (lower is better)
Translates to: SLSLISFWTSSSDSF*RTTTGLAPLFRSST
Trigger: AGTTGAAGATCTAAACAAAGGAGCTAAGCCTGTAGTTGTTCTGCAAAAACTATCGCTGGATGATGTCCAGAAGCTAATTAAAGATAGAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAACTGGTGTTGTTCTGTTaGTTGTCATTTGGTTTTGTG +
Preference number: 5 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQLVLFC*LSFGFV
Trigger: CACAAAACCAAATGACAACAAACAGAACAACACCAG...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp AACAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACCGAGGTGAGTCAGATTaGATATCCTGTTTATGCTTA +
Preference number: 5 (lower is better)
Translates to: NRINYISRRVCHFTAWRNRGESD*ISCLCL
Trigger: TAAGCATAAACAGGATATCAAATCTGACTCACCTCG...GTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAAAGGGTGTTATTCCCATaGATGAAACCTGAAGAATTG +
Preference number: 5 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQRVLFP*MKPEEL
Trigger: CAATTCTTCAGGTTTCATCAATGGGAATAACACCCT...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CCA 90 bp TCTGAAACATTGCTATTTTCCATACCAGATAGCATATCGTCTTGCTaGTCCATATCTGAAGATCTTACACGAGAAAGTCTTAATGTAAGT +
Preference number: 5 (lower is better)
Translates to: SETLLFSIPDSISSC*SISEDLTRESLNVS
Trigger: ACTTACATTAAGACTTTCTCGTGTAAGATCTTCAGATATGGACCAGCAAGACGATATGCTATCTGGTATGGAAAATAGCAATGTTTCAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAAAATGGACCAGAAACTTaGTTATCATGGATGTTTCTC +
Preference number: 5 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQNGPET*LSWMFL
Trigger: GAGAAACATCCATGATAACAAAGTTTCTGGTCCATT...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp CAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACAATTCCTTAAACTTCTCTaGCTAGTTGGTAATCTTGCA +
Preference number: 5 (lower is better)
Translates to: QNKLYIQESLPFYSLEKQFLKLL*LVGNLA
Trigger: TGCAAGATTACCAACTAGCAAGAGAAGTTTAAGGAA...TTGTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS-3UTR CAA 90 bp AACAGAATAAATTATATATCCAGGAGAGTCTGCCATTTTACAGCCTGGAGAAACATGCCCTCTTCATCATaGACTCTACGAATCATTTTT +
Preference number: 5 (lower is better)
Translates to: NRINYISRRVCHFTAWRNMPSSS*TLRIIF
Trigger: AAAAATGATTCGTAGAGTCAATGATGAAGAGGGCAT...GTTTCTCCAGGCTGTAAAATGGCAGACTCTCCTGGATATATAATTTATTCTGTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS GCA 90 bp TTTTCTGAAACATTGCTATTTTCCATACCAGATAGCATATCGTCTTaGTGGTCCATATCTGAAGATCTTACACGAGAAAGTCTTAATGTA +
Preference number: 5 (lower is better)
Translates to: FSETLLFSIPDSISS*WSISEDLTRESLNV
Trigger: TACATTAAGACTTTCTCGTGTAAGATCTTCAGATATGGACCAGCAAGACGATATGCTATCTGGTATGGAAAATAGCAATGTTTCAGAAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CCA 72 bp CTACCCAAGGCACCAGTTTGCGGCCATCGCGGCGCTTaGCCTCCGTCCAGGAGCCGCTGTAGGAGCCTGCCA +
Preference number: 6 (lower is better)
Translates to: LPKAPVCGHRGA*PPSRSRCRSLP
Trigger: TGGCAGGCTCCTACAGCGGCTCCTGGACGGAGGCCAAGCGCCGCGATGGCCGCAAACTGGTGCCTTGGGTAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS GCA 72 bp GCGCTTGGCCTCCGTCCAGGAGCCGCTGTAGGAGCCTaGCATCCACTGGACACTGACGCCACTGCTGGTTCT +
Preference number: 6 (lower is better)
Translates to: ALGLRPGAAVGA*HPLDTDATAGS
Trigger: AGAACCAGCAGTGGCGTCAGTGTCCAGTGGATGGCAGGCTCCTACAGCGGCTCCTGGACGGAGGCCAAGCGC
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 72 bp TCTGACTCTTTAATAGTGTCTACCCAAGGCACCAGTTaGCGGCCATCGCGGCGCTTGGCCTCCGTCCAGGAG +
Preference number: 6 (lower is better)
Translates to: SDSLIVSTQGTS*RPSRRLASVQE
Trigger: CTCCTGGACGGAGGCCAAGCGCCGCGATGGCCGCAAACTGGTGCCTTGGGTAGACACTATTAAAGAGTCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 72 bp GCTGGCCTTGACCCATTTCCCGTAGAACCCGTCTCCTaGGAAGCTGGTCTATTACCTCCTGTAGCACCCCCA +
Preference number: 6 (lower is better)
Translates to: AGLDPFPVEPVS*EAGLLPPVAPP
Trigger: TGGGGGTGCTACAGGAGGTAATAGACCAGCTTCTCAGGAGACGGGTTCTACGGGAAATGGGTCAAGGCCAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 72 bp AGGAGCCGCTGTAGGAGCCTGCCATCCACTGGACACTaGCGCCACTGCTGGTTCTCTGTACTACTCTTGCAA +
Preference number: 6 (lower is better)
Translates to: RSRCRSLPSTGH*RHCWFSVLLLQ
Trigger: TTGCAAGAGTAGTACAGAGAACCAGCAGTGGCGTCAGTGTCCAGTGGATGGCAGGCTCCTACAGCGGCTCCT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 72 bp CTCCTCCTTCCGTCATGGGAGTGGCCACTTCTCCTATaGTCCCCAGAGCTTCTTCTGTCGCGCTCTTCGTAT +
Preference number: 6 (lower is better)
Translates to: LLLPSWEWPLLL*SPELLLSRSSY
Trigger: ATACGAAGAGCGCGACAGAAGAAGCTCTGGGGATCATAGGAGAAGTGGCCACTCCCATGACGGAAGGAGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 72 bp ACATTCAGGGCGAAGTGGCGCACACTTGACTGGGTATaGAAGAACGCCTCCAGCACCTGCTTGAGGTACAGC +
Preference number: 6 (lower is better)
Translates to: TFRAKWRTLDWV*KNASSTCLRYS
Trigger: GCTGTACCTCAAGCAGGTGCTGGAGGCGTTCTTTCATACCCAGTCAAGTGTGCGCCACTTCGCCCTGAATGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS GCA 72 bp TCCCTGAAAACGTTCGGACTCCTTGCCAGGACGGCCTaGAACAAGACGGGTATATCGCCTTCGGGATCATCA +
Preference number: 6 (lower is better)
Translates to: SLKTFGLLARTA*NKTGISPSGSS
Trigger: TGATGATCCCGAAGGCGATATACCCGTCTTGTTGCAGGCCGTCCTGGCAAGGAGTCCGAACGTTTTCAGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS GCA 72 bp CTGCATGCTTTTCTCCCTGAAAACGTTCGGACTCCTTaGCAGGACGGCCTGCAACAAGACGGGTATATCGCC +
Preference number: 6 (lower is better)
Translates to: LHAFLPENVRTP*QDGLQQDGYIA
Trigger: GGCGATATACCCGTCTTGTTGCAGGCCGTCCTGGCAAGGAGTCCGAACGTTTTCAGGGAGAAAAGCATGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CCA 72 bp GAAAGGCGCGTCTGTGTTGGCGGTTCCCGCGGATCATaGAGTATAGATGTGAGCACAGAGCACTGGAGGATT +
Preference number: 6 (lower is better)
Translates to: ERRVCVGGSRGS*SIDVSTEHWRI
Trigger: AATCCTCCAGTGCTCTGTGCTCACATCTATACTCCATGATCCGCGGGAACCGCCAACACAGACGCGCCTTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 72 bp CAGAGCAATGACATTCAGGGCGAAGTGGCGCACACTTaGCTGGGTATGAAAGAACGCCTCCAGCACCTGCTT +
Preference number: 6 (lower is better)
Translates to: QSNDIQGEVAHT*LGMKERLQHLL
Trigger: AAGCAGGTGCTGGAGGCGTTCTTTCATACCCAGTCAAGTGTGCGCCACTTCGCCCTGAATGTCATTGCTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 72 bp GAAGATCTCAATGTTTCTGGTCTTCGAACCCTTGACTaGTCACCCCGATGTCGCTCTGACTCACCCCTGTCA +
Preference number: 6 (lower is better)
Translates to: EDLNVSGLRTLD*SPRCRSDSPLS
Trigger: TGACAGGGGTGAGTCAGAGCGACATCGGGGTGATCAGTCAAGGGTTCGAAGACCAGAAACATTGAGATCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CCA 72 bp CGCGGATCATGGAGTATAGATGTGAGCACAGAGCACTaGAGGATTCATCTTGTCGGAAACCCCTTACAGGGT +
Preference number: 6 (lower is better)
Translates to: RGSWSIDVSTEH*RIHLVGNPLQG
Trigger: ACCCTGTAAGGGGTTTCCGACAAGATGAATCCTCCAGTGCTCTGTGCTCACATCTATACTCCATGATCCGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CCA 72 bp ACTCCGAATCTACCCGCTTTCGAGACTTCCGAGGTCTaGACACTTCTTCTTCACTCTCACTGGACTCGTTCT +
Preference number: 6 (lower is better)
Translates to: TPNLPAFETSEV*TLLLHSHWTRS
Trigger: AGAACGAGTCCAGTGAGAGTGAAGAAGAAGTGTCCAGACCTCGGAAGTCTCGAAAGCGGGTAGATTCGGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 90 bp TGCAGGACTCTGTGGGGCATATGGACTAGGCACTGGGCTATTTTGTaGTGGCATAAATCTGTTCCCAGAGCTTGTCTGTGGTGGCACAAA +
Preference number: 6 (lower is better)
Translates to: CRTLWGIWTRHWAIL*WHKSVPRACLWWHK
Trigger: TTTGTGCCACCACAGACAAGCTCTGGGAACAGATTTATGCCACAACAAAATAGCCCAGTGCCTAGTCCATATGCCCCACAGAGTCCTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 90 bp GACTTGATACCGATGCTTGCTGCATCTGCGGATGTGTTGTGTAACTaGAAGGATGGGAATATGGCATGTATCCTGCAGGACTCTGTGGGG +
Preference number: 6 (lower is better)
Translates to: DLIPMLAASADVLCN*KDGNMACILQDSVG
Trigger: CCCCACAGAGTCCTGCAGGATACATGCCATATTCCCATCCTTCAAGTTACACAACACATCCGCAGATGCAGCAAGCATCGGTATCAAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 72 bp GGAAGGAATGCTGTTTGTTCTTGCTGCGACAAACACTaGGCAGCATTAAGTGGGCGGTTTACGTCCTGTGGA +
Preference number: 6 (lower is better)
Translates to: GRNAVCSCCDKH*AALSGRFTSCG
Trigger: TCCACAGGACGTAAACCGCCCACTTAATGCTGCTCAGTGTTTGTCGCAGCAAGAACAAACAGCATTCCTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 72 bp GTCGGAAACCCCTTACAGGGTCTTTTAGGCACGTGTTaGTCGCCTGTTGGACCTGGTAAGACATCTTCATAC +
Preference number: 6 (lower is better)
Translates to: VGNPLQGLLGTC*SPVGPGKTSSY
Trigger: GTATGAAGATGTCTTACCAGGTCCAACAGGCGATCAACACGTGCCTAAAAGACCCTGTAAGGGGTTTCCGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CCA 72 bp GAACTCCGCGCTGCATGTCAAGCCTTGCTAGAATACTaGGGTCTACAGCAACAACCTCAGACAAACACTTCA +
Preference number: 6 (lower is better)
Translates to: ELRAACQALLEY*GLQQQPQTNTS
Trigger: TGAAGTGTTTGTCTGAGGTTGTTGCTGTAGACCCCAGTATTCTAGCAAGGCTTGACATGCAGCGCGGAGTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 72 bp TGCCTTACGATGCTCCTCTTCACATCCTCCGTCAGTTaGGAATTAGCCATGTCACTTCGCAGGAAGTCCAGT +
Preference number: 6 (lower is better)
Translates to: CLTMLLFTSSVS*ELAMSLRRKSS
Trigger: ACTGGACTTCCTGCGAAGTGACATGGCTAATTCCAAACTGACGGAGGATGTGAAGAGGAGCATCGTAAGGCA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 72 bp CGATGCTTGCTGCATCTGCGGATGTGTTGTGTAACTTaGAGGATGGGAATATGGCATGTATCCTGCAGGACT +
Preference number: 6 (lower is better)
Translates to: RCLLHLRMCCVT*RMGIWHVSCRT
Trigger: AGTCCTGCAGGATACATGCCATATTCCCATCCTTCAAGTTACACAACACATCCGCAGATGCAGCAAGCATCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 72 bp ATGGATGTTTCTCAAGCCACCGGCAACAATAGGACTTaGTACCGATGCTTGCTGCATCTGCGGATGTGTTGT +
Preference number: 6 (lower is better)
Translates to: MDVSQATGNNRT*YRCLLHLRMCC
Trigger: ACAACACATCCGCAGATGCAGCAAGCATCGGTATCAAGTCCTATTGTTGCCGGTGGCTTGAGAAACATCCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 72 bp GGATCTGTTCCCATGGCAATTAAGTATGGAACACACTaGACCGGATGGATGAGGCCTTGGTTCAGAGTCAGA +
Preference number: 6 (lower is better)
Translates to: GSVPMAIKYGTH*TGWMRPWFRVR
Trigger: TCTGACTCTGAACCAAGGCCTCATCCATCCGGTTCAGTGTGTTCCATACTTAATTGCCATGGGAACAGATCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CCA 72 bp AGGTTGAGTAAAGAAATAAGAAAGGCGCGTCTGTGTTaGCGGTTCCCGCGGATCATGGAGTATAGATGTGAG +
Preference number: 6 (lower is better)
Translates to: RLSKEIRKARLC*RFPRIMEYRCE
Trigger: CTCACATCTATACTCCATGATCCGCGGGAACCGCCAACACAGACGCGCCTTTCTTATTTCTTTACTCAACCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 72 bp ACTCTGTGGGGCATATGGACTAGGCACTGGGCTATTTaGTTGTGGCATAAATCTGTTCCCAGAGCTTGTCTG +
Preference number: 6 (lower is better)
Translates to: TLWGIWTRHWAI*LWHKSVPRACL
Trigger: CAGACAAGCTCTGGGAACAGATTTATGCCACAACAAAATAGCCCAGTGCCTAGTCCATATGCCCCACAGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 72 bp ACTACAGCGCTCTCGCTCTGTTTGGACTCTGTCGTTTaGTTCTCGTTCTGCTTAAGTTCTTCTGTTGGGGTC +
Preference number: 6 (lower is better)
Translates to: TTALSLCLDSVV*FSFCLSSSVGV
Trigger: GACCCCAACAGAAGAACTTAAGCAGAACGAGAACAAAACGACAGAGTCCAAACAGAGCGAGAGCGCTGTAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 90 bp TCTAAGTACTGCCTTACGATGCTCCTCTTCACATCCTCCGTCAGTTaGGAATTAGCCATGTCACTTCGCAGGAAGTCCAGTGTTTGTTTG +
Preference number: 6 (lower is better)
Translates to: SKYCLTMLLFTSSVS*ELAMSLRRKSSVCL
Trigger: CAAACAAACACTGGACTTCCTGCGAAGTGACATGGCTAATTCCAAACTGACGGAGGATGTGAAGAGGAGCATCGTAAGGCAGTACTTAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 90 bp CCACTGCTGGTTCTCTGTACTACTCTTGCAATCTGTGGTCGGTCTTaGTACTTTGGACAGCAAATAGCGATGACATCCATGACGTCAACA +
Preference number: 6 (lower is better)
Translates to: PLLVLCTTLAICGRS*YFGQQIAMTSMTST
Trigger: TGTTGACGTCATGGATGTCATCGCTATTTGCTGTCCAAAGTACAAAGACCGACCACAGATTGCAAGAGTAGTACAGAGAACCAGCAGTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CCA 72 bp ATATGGCATGTATCCTGCAGGACTCTGTGGGGCATATaGACTAGGCACTGGGCTATTTTGTTGTGGCATAAA +
Preference number: 6 (lower is better)
Translates to: IWHVSCRTLWGI*TRHWAILLWHK
Trigger: TTTATGCCACAACAAAATAGCCCAGTGCCTAGTCCATATGCCCCACAGAGTCCTGCAGGATACATGCCATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CCA 72 bp TTGTTCTTGCTGCGACAAACACTGAGCAGCATTAAGTaGGCGGTTTACGTCCTGTGGAGTAATGGGTGTTTT +
Preference number: 6 (lower is better)
Translates to: LFLLRQTLSSIK*AVYVLWSNGCF
Trigger: AAAACACCCATTACTCCACAGGACGTAAACCGCCCACTTAATGCTGCTCAGTGTTTGTCGCAGCAAGAACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CCA 72 bp GCCACTGCTGGTTCTCTGTACTACTCTTGCAATCTGTaGTCGGTCTTTGTACTTTGGACAGCAAATAGCGAT +
Preference number: 6 (lower is better)
Translates to: ATAGSLYYSCNL*SVFVLWTANSD
Trigger: ATCGCTATTTGCTGTCCAAAGTACAAAGACCGACCACAGATTGCAAGAGTAGTACAGAGAACCAGCAGTGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 72 bp ACCTGGTTGAGACTATGGACAAGCTGTGAAACCAAATaGTCATCCCTACAGGCCAAAAGGCAGTTCACCTCT +
Preference number: 6 (lower is better)
Translates to: TWLRLWTSCETK*SSLQAKRQFTS
Trigger: AGAGGTGAACTGCCTTTTGGCCTGTAGGGATGACAATTTGGTTTCACAGCTTGTCCATAGTCTCAACCAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 90 bp TTAGGCTCAACTACAGCGCTCTCGCTCTGTTTGGACTCTGTCGTTTaGTTCTCGTTCTGCTTAAGTTCTTCTGTTGGGGTCTCAGTTTTA +
Preference number: 6 (lower is better)
Translates to: LGSTTALSLCLDSVV*FSFCLSSSVGVSVL
Trigger: TAAAACTGAGACCCCAACAGAAGAACTTAAGCAGAACGAGAACAAAACGACAGAGTCCAAACAGAGCGAGAGCGCTGTAGTTGAGCCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS GCA 72 bp GCAACAAGACGGGTATATCGCCTTCGGGATCATCACTaGCAAGGTTATCTTTCAGTTCTATGTGATCTGTTG +
Preference number: 6 (lower is better)
Translates to: ATRRVYRLRDHH*QGYLSVLCDLL
Trigger: CAACAGATCACATAGAACTGAAAGATAACCTTGGCAGTGATGATCCCGAAGGCGATATACCCGTCTTGTTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS GCA 72 bp ATGCTTCGAAGAAACTTTTTCCGGTTCTCAGCGCGATaGATGATCTGCCCAGTTGTCTCAAGTTCTTTTGCA +
Preference number: 6 (lower is better)
Translates to: MLRRNFFRFSAR*MICPVVSSSFA
Trigger: TGCAAAAGAACTTGAGACAACTGGGCAGATCATGCATCGCGCTGAGAACCGGAAAAAGTTTCTTCGAAGCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS GCA 72 bp TCATTTTGCGTACTACACTTAGTGGTGAGGTACGGCTaGATAGTCATGGCATGTTTAACCATGAGTTGGGGT +
Preference number: 6 (lower is better)
Translates to: SFCVLHLVVRYG*IVMACLTMSWG
Trigger: ACCCCAACTCATGGTTAAACATGCCATGACTATGCAGCCGTACCTCACCACTAAGTGTAGTACGCAAAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CCA 72 bp ACGCTTGCGTTTGTTCATTTTCACACGTTCACAAAGTaGCATGGTAGATTCAATTTCTGCCAGGAGCTCAGG +
Preference number: 6 (lower is better)
Translates to: TLAFVHFHTFTK*HGRFNFCQELR
Trigger: CCTGAGCTCCTGGCAGAAATTGAATCTACCATGCCACTTTGTGAACGTGTGAAAATGAACAAACGCAAGCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 72 bp GACTTGATACCGATGCTTGCTGCATCTGCGGATGTGTaGTGTAACTTGAAGGATGGGAATATGGCATGTATC +
Preference number: 6 (lower is better)
Translates to: DLIPMLAASADV*CNLKDGNMACI
Trigger: GATACATGCCATATTCCCATCCTTCAAGTTACACAACACATCCGCAGATGCAGCAAGCATCGGTATCAAGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 72 bp TTCTGTTTAGGCTCAACTACAGCGCTCTCGCTCTGTTaGGACTCTGTCGTTTTGTTCTCGTTCTGCTTAAGT +
Preference number: 6 (lower is better)
Translates to: FCLGSTTALSLC*DSVVLFSFCLS
Trigger: ACTTAAGCAGAACGAGAACAAAACGACAGAGTCCAAACAGAGCGAGAGCGCTGTAGTTGAGCCTAAACAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 90 bp TCTGTTGATACCTGGTTGAGACTATGGACAAGCTGTGAAACCAAATaGTCATCCCTACAGGCCAAAAGGCAGTTCACCTCTTCTGCTATT +
Preference number: 6 (lower is better)
Translates to: SVDTWLRLWTSCETK*SSLQAKRQFTSSAI
Trigger: AATAGCAGAAGAGGTGAACTGCCTTTTGGCCTGTAGGGATGACAATTTGGTTTCACAGCTTGTCCATAGTCTCAACCAGGTATCAACAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 72 bp TGGGCGGTTTACGTCCTGTGGAGTAATGGGTGTTTTTaGAGTCTGTCCTGGATACTGCACATTAAAAGGAAT +
Preference number: 6 (lower is better)
Translates to: WAVYVLWSNGCF*SLSWILHIKRN
Trigger: ATTCCTTTTAATGTGCAGTATCCAGGACAGACTTCAAAAACACCCATTACTCCACAGGACGTAAACCGCCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 72 bp ATGTCTATGTGGTGCATTATAAACAGCGGCTCTTCCTaGGTCTGGTATGGAAAACAGGCTAGATTGTCTGCT +
Preference number: 6 (lower is better)
Translates to: MSMWCIINSGSS*VWYGKQARLSA
Trigger: AGCAGACAATCTAGCCTGTTTTCCATACCAGACTCAGGAAGAGCCGCTGTTTATAATGCACCACATAGACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 72 bp GTCCCATCCTTGGCGGCATACAGGGATCGTAAAGTCTaGACAACTTTATTAGTCAGCTTATTAGCACTCGTT +
Preference number: 6 (lower is better)
Translates to: VPSLAAYRDRKV*TTLLVSLLALV
Trigger: AACGAGTGCTAATAAGCTGACTAATAAAGTTGTTCAGACTTTACGATCCCTGTATGCCGCCAAGGATGGGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CCA 72 bp TATCTTGAACTTCCTTTGAGAAGCGCTCCCTTTCAATaGCTGATTCTCGCTCTATCCGTTCAATTTCTGCCA +
Preference number: 6 (lower is better)
Translates to: YLELPLRSAPFQ*LILALSVQFLP
Trigger: TGGCAGAAATTGAACGGATAGAGCGAGAATCAGCCATTGAAAGGGAGCGCTTCTCAAAGGAAGTTCAAGATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CCA 72 bp TACTACTCTTGCAATCTGTGGTCGGTCTTTGTACTTTaGACAGCAAATAGCGATGACATCCATGACGTCAAC +
Preference number: 6 (lower is better)
Translates to: YYSCNLWSVFVL*TANSDDIHDVN
Trigger: GTTGACGTCATGGATGTCATCGCTATTTGCTGTCCAAAGTACAAAGACCGACCACAGATTGCAAGAGTAGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 72 bp TGGTTAGCTGAGTTGCCAGATAATGGACCAGAAACTTaGTTATCATGGATGTTTCTCAAGCCACCGGCAACA +
Preference number: 6 (lower is better)
Translates to: WLAELPDNGPET*LSWMFLKPPAT
Trigger: TGTTGCCGGTGGCTTGAGAAACATCCATGATAACAAAGTTTCTGGTCCATTATCTGGCAACTCAGCTAACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 72 bp GAGATCTTAAGGGGAAAGATGCAGCATTCCTCATTGTaGAAGAATCGCCATCATCACTACTTAGCCTGTGCA +
Preference number: 6 (lower is better)
Translates to: EILRGKMQHSSL*KNRHHHYLACA
Trigger: TGCACAGGCTAAGTAGTGATGATGGCGATTCTTCAACAATGAGGAATGCTGCATCTTTCCCCTTAAGATCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 72 bp GAGGAGATCTTAAGGGGAAAGATGCAGCATTCCTCATaGTTGAAGAATCGCCATCATCACTACTTAGCCTGT +
Preference number: 6 (lower is better)
Translates to: EEILRGKMQHSS*LKNRHHHYLAC
Trigger: ACAGGCTAAGTAGTGATGATGGCGATTCTTCAACAATGAGGAATGCTGCATCTTTCCCCTTAAGATCTCCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 72 bp GTTCTCTGTACTACTCTTGCAATCTGTGGTCGGTCTTaGTACTTTGGACAGCAAATAGCGATGACATCCATG +
Preference number: 6 (lower is better)
Translates to: VLCTTLAICGRS*YFGQQIAMTSM
Trigger: CATGGATGTCATCGCTATTTGCTGTCCAAAGTACAAAGACCGACCACAGATTGCAAGAGTAGTACAGAGAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS GCA 72 bp GGAGTCCTTGGTTGGAGAGCTAATTATATCATACATTaGAGCTTTCTCGTTCTGGTCTTTTTCATCCTTGCC +
Preference number: 6 (lower is better)
Translates to: GVLGWRANYIIH*SFLVLVFFILA
Trigger: GGCAAGGATGAAAAAGACCAGAACGAGAAAGCTGCAATGTATGATATAATTAGCTCTCCAACCAAGGACTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS GCA 72 bp TCTAGATGTTCCATGAGAAGTTTAAAGTCTAAGTACTaGCTTACGATGCTCCTCTTCACATCCTCCGTCAGT +
Preference number: 6 (lower is better)
Translates to: SRCSMRSLKSKY*LTMLLFTSSVS
Trigger: ACTGACGGAGGATGTGAAGAGGAGCATCGTAAGGCAGTACTTAGACTTTAAACTTCTCATGGAACATCTAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CCA 72 bp GAGTTGCCAGATAATGGACCAGAAACTTTGTTATCATaGATGTTTCTCAAGCCACCGGCAACAATAGGACTT +
Preference number: 6 (lower is better)
Translates to: ELPDNGPETLLS*MFLKPPATIGL
Trigger: AAGTCCTATTGTTGCCGGTGGCTTGAGAAACATCCATGATAACAAAGTTTCTGGTCCATTATCTGGCAACTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 90 bp CTATTTTCATTCTGTTTAGGCTCAACTACAGCGCTCTCGCTCTGTTaGGACTCTGTCGTTTTGTTCTCGTTCTGCTTAAGTTCTTCTGTT +
Preference number: 6 (lower is better)
Translates to: LFSFCLGSTTALSLC*DSVVLFSFCLSSSV
Trigger: AACAGAAGAACTTAAGCAGAACGAGAACAAAACGACAGAGTCCAAACAGAGCGAGAGCGCTGTAGTTGAGCCTAAACAGAATGAAAATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 72 bp CAGACAAACACTTCATGGCTTTTGTTCGAACGGCAATaGCATTTTCACCAAGAACTCGTAGTATCTGTGTCA +
Preference number: 6 (lower is better)
Translates to: QTNTSWLLFERQ*HFHQELVVSVS
Trigger: TGACACAGATACTACGAGTTCTTGGTGAAAATGCAATTGCCGTTCGAACAAAAGCCATGAAGTGTTTGTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 72 bp CAGCTCACACAATGTTGTACTACAGTCATGCCGTATTaGATGATCAGCTTCATCAGATCTTCCTCAATAGTG +
Preference number: 6 (lower is better)
Translates to: QLTQCCTTVMPY*MISFIRSSSIV
Trigger: CACTATTGAGGAAGATCTGATGAAGCTGATCATCAAATACGGCATGACTGTAGTACAACATTGTGTGAGCTG
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 90 bp GGGTGTTCCATCAGTGGTACAACTAACTCAAGGATTTTTGCAACATaGCAGATAACCATGAAATCATTTTGCGTACTACACTTAGTGGTG +
Preference number: 6 (lower is better)
Translates to: GCSISGTTNSRIFAT*QITMKSFCVLHLVV
Trigger: CACCACTAAGTGTAGTACGCAAAATGATTTCATGGTTATCTGCAATGTTGCAAAAATCCTTGAGTTAGTTGTACCACTGATGGAACACCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 72 bp TGCATGATCTGCCCAGTTGTCTCAAGTTCTTTTGCATaGTGTGTTGCGTCAGATGATTCTTCATCTTTTTGT +
Preference number: 6 (lower is better)
Translates to: CMICPVVSSSFA*CVASDDSSSFC
Trigger: ACAAAAAGATGAAGAATCATCTGACGCAACACATCATGCAAAAGAACTTGAGACAACTGGGCAGATCATGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 72 bp TCCACAGTGTCAGAGTTCATCTTTAATGTGCTGAACTaGGAAGGTGTGGTTTTGATAATGCTTCGAAGAAAC +
Preference number: 6 (lower is better)
Translates to: STVSEFIFNVLN*EGVVLIMLRRN
Trigger: GTTTCTTCGAAGCATTATCAAAACCACACCTTCTCAGTTCAGCACATTAAAGATGAACTCTGACACTGTGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS GCA 72 bp TTTAATCGAGGTGAGTCAGATTTGATATCCTGTTTATaGTTAGACACATCGGGTTTCTTCTCTGTTGATGGC +
Preference number: 6 (lower is better)
Translates to: FNRGESDLISCL*LDTSGFFSVDG
Trigger: GCCATCAACAGAGAAGAAACCCGATGTGTCTAAGCATAAACAGGATATCAAATCTGACTCACCTCGATTAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS GCA 72 bp TTCCTTTTGTCTTTTACCATAGACTCCTTGAATGACTaGAATAGGTTACTACCGGAAACAGAGAGCGTAATG +
Preference number: 6 (lower is better)
Translates to: FLLSFTIDSLND*NRLLPETESVM
Trigger: CATTACGCTCTCTGTTTCCGGTAGTAACCTATTGCAGTCATTCAAGGAGTCTATGGTAAAAGACAAAAGGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 72 bp GGAATCCTCTTCAGACTTCAACAAATTTTGAAGGAGTaGCTCAAACCAGTCATATCCAGTATCTCTACATGC +
Preference number: 6 (lower is better)
Translates to: GILFRLQQILKE*LKPVISSISTC
Trigger: GCATGTAGAGATACTGGATATGACTGGTTTGAGCAACTCCTTCAAAATTTGTTGAAGTCTGAAGAGGATTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS TCA 72 bp TCTGGTATAGACTTAAGACTTCCAACAATATCTTCCTaGAGAACAGAAATGGGCGCATCATTACACTGTTTG +
Preference number: 6 (lower is better)
Translates to: SGIDLRLPTISS*RTEMGASLHCL
Trigger: CAAACAGTGTAATGATGCGCCCATTTCTGTTCTTCAGGAAGATATTGTTGGAAGTCTTAAGTCTATACCAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS GCA 72 bp ACATTGCTATTTTCCATACCAGATAGCATATCGTCTTaGTGGTCCATATCTGAAGATCTTACACGAGAAAGT +
Preference number: 6 (lower is better)
Translates to: TLLFSIPDSISS*WSISEDLTRES
Trigger: ACTTTCTCGTGTAAGATCTTCAGATATGGACCAGCAAGACGATATGCTATCTGGTATGGAAAATAGCAATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS GCA 72 bp TTAATTAGCTTCTGGACATCATCCAGCGATAGTTTTTaGAGAACAACTACAGGCTTAGCTCCTTTGTTTAGA +
Preference number: 6 (lower is better)
Translates to: LISFWTSSSDSF*RTTTGLAPLFR
Trigger: TCTAAACAAAGGAGCTAAGCCTGTAGTTGTTCTGCAAAAACTATCGCTGGATGATGTCCAGAAGCTAATTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CCA 72 bp TTGCTATTTTCCATACCAGATAGCATATCGTCTTGCTaGTCCATATCTGAAGATCTTACACGAGAAAGTCTT +
Preference number: 6 (lower is better)
Translates to: LLFSIPDSISSC*SISEDLTRESL
Trigger: AAGACTTTCTCGTGTAAGATCTTCAGATATGGACCAGCAAGACGATATGCTATCTGGTATGGAAAATAGCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 72 bp TCAGCTCTTTCTGATTTTAATCGAGGTGAGTCAGATTaGATATCCTGTTTATGCTTAGACACATCGGGTTTC +
Preference number: 6 (lower is better)
Translates to: SALSDFNRGESD*ISCLCLDTSGF
Trigger: GAAACCCGATGTGTCTAAGCATAAACAGGATATCAAATCTGACTCACCTCGATTAAAATCAGAAAGAGCTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 72 bp GTTCTCATCCAGATAATCAAGCAATGCTTTTTGCAATaGTTGGATCTCATCTTCTCCTCCAGAAACCTGTTT +
Preference number: 6 (lower is better)
Translates to: VLIQIIKQCFLQ*LDLIFSSRNLF
Trigger: AAACAGGTTTCTGGAGGAGAAGATGAGATCCAACAATTGCAAAAAGCATTGCTTGATTATCTGGATGAGAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 90 bp TTTAAGGCTTCAGCTCTTTCTGATTTTAATCGAGGTGAGTCAGATTaGATATCCTGTTTATGCTTAGACACATCGGGTTTCTTCTCTGTT +
Preference number: 6 (lower is better)
Translates to: FKASALSDFNRGESD*ISCLCLDTSGFFSV
Trigger: AACAGAGAAGAAACCCGATGTGTCTAAGCATAAACAGGATATCAAATCTGACTCACCTCGATTAAAATCAGAAAGAGCTGAAGCCTTAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 90 bp TCTTCAATGTATACAGCTTTTGGCATGTTAGGAGATGTCATAATGTaGATAGTTGTAAGACAGGCATCTGCTGACTTTGTAACTCTTTCC +
Preference number: 6 (lower is better)
Translates to: SSMYTAFGMLGDVIM*IVVRQASADFVTLS
Trigger: GGAAAGAGTTACAAAGTCAGCAGATGCCTGTCTTACAACTATCAACATTATGACATCTCCTAACATGCCAAAAGCTGTATACATTGAAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 90 bp CAACAACCTCAGACAAACACTTCATGGCTTTTGTTCGAACGGCAATaGCATTTTCACCAAGAACTCGTAGTATCTGTGTCAAATAAATAT +
Preference number: 6 (lower is better)
Translates to: QQPQTNTSWLLFERQ*HFHQELVVSVSNKY
Trigger: ATATTTATTTGACACAGATACTACGAGTTCTTGGTGAAAATGCAATTGCCGTTCGAACAAAAGCCATGAAGTGTTTGTCTGAGGTTGTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CCA 72 bp CTTCCTTGTCATTGCTTCTTTGTCATTATGTGGAGTTaGAGTAAACCAGAGCTTTTGGAATGTTTCATTTAC +
Preference number: 6 (lower is better)
Translates to: LPCHCFFVIMWS*SKPELLECFIY
Trigger: GTAAATGAAACATTCCAAAAGCTCTGGTTTACTCCAACTCCACATAATGACAAAGAAGCAATGACAAGGAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 72 bp TATACAGCTTTTGGCATGTTAGGAGATGTCATAATGTaGATAGTTGTAAGACAGGCATCTGCTGACTTTGTA +
Preference number: 6 (lower is better)
Translates to: YTAFGMLGDVIM*IVVRQASADFV
Trigger: TACAAAGTCAGCAGATGCCTGTCTTACAACTATCAACATTATGACATCTCCTAACATGCCAAAAGCTGTATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 72 bp ATCAGTGGTACAACTAACTCAAGGATTTTTGCAACATaGCAGATAACCATGAAATCATTTTGCGTACTACAC +
Preference number: 6 (lower is better)
Translates to: ISGTTNSRIFAT*QITMKSFCVLH
Trigger: GTGTAGTACGCAAAATGATTTCATGGTTATCTGCAATGTTGCAAAAATCCTTGAGTTAGTTGTACCACTGAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8
CDS CAA 72 bp ATATTCTTCTCCAATATATTTAGGACTTTCACAGTTTaGTCAGTTGAAAGCTTGTCCATTATACCCATGGCT +
Preference number: 6 (lower is better)
Translates to: IFFSNIFRTFTV*SVESLSIIPMA
Trigger: AGCCATGGGTATAATGGACAAGCTTTCAACTGACAAAACTGTGAAAGTCCTAAATATATTGGAGAAGAATAT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052965.8