Pregenerated sensors for NIPAL4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020411Ensembl transcript IDs: ENSMUST00000020679.3
Found 111 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTTCTGGCCAAATGTAAGGTCACCAAAAGTGACCCTAAGAGCAGGTaGTGGTGGAGGACTCATGGCATGCTGTTTCCAGTGTGGGCAGCT | + |
|
Preference number: 1 (lower is better) Translates to: LLAKCKVTKSDPKSR*WWRTHGMLFPVWAA Trigger: AGCTGCCCACACTGGAAACAGCATGCCATGAGTCCTCCACCATCACCTGCTCTTAGGGTCACTTTTGGTGACCTTACATTTGGCCAGAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CCA 90 bp | GTATCTTGGGATGGGCAGAGAGGGAAGGATAGTAGTGCCTGCCACTaGAGGCACAGACAACAAGATGTGACCTCAAGTGCTTGGAGAATG | + |
|
Preference number: 1 (lower is better) Translates to: VSWDGQRGKDSSACH*RHRQQDVTSSAWRM Trigger: CATTCTCCAAGCACTTGAGGTCACATCTTGTTGTCTGTGCCTCCAGTGGCAGGCACTACTATCCTTCCCTCTCTGCCCATCCCAAGATAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR GCA 90 bp | GAAAATACTGGGGATTGGGAAGGTATAGGGCCCAGAGTGTTGATCTaGCCTAAGAGCTTGTCCAAGGCCAGAAACAGTTTGACCTGGGTG | + |
|
Preference number: 1 (lower is better) Translates to: ENTGDWEGIGPRVLI*PKSLSKARNSLTWV Trigger: CACCCAGGTCAAACTGTTTCTGGCCTTGGACAAGCTCTTAGGGCAGATCAACACTCTGGGCCCTATACCTTCCCAATCCCCAGTATTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR TCA 90 bp | CCTGACAGGCTAATTGGTGTGAAGGAGTTCCCGATGACCGATAGCTaGGGGAAGTTCTTGAGCTGGGCTACATTCAGCAGGTCAAATTCT | + |
|
Preference number: 1 (lower is better) Translates to: PDRLIGVKEFPMTDS*GKFLSWATFSRSNS Trigger: AGAATTTGACCTGCTGAATGTAGCCCAGCTCAAGAACTTCCCTCAGCTATCGGTCATCGGGAACTCCTTCACACCAATTAGCCTGTCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CCA 90 bp | CTTTGGAGATCAGGGACTGGCATCCCAGTATGTGAGAGGAACCAGTaGAGTGAATTTGCTCCGTGTACATGGAAGGTCAGGACATTTGTC | + |
|
Preference number: 1 (lower is better) Translates to: LWRSGTGIPVCERNQ*SEFAPCTWKVRTFV Trigger: GACAAATGTCCTGACCTTCCATGTACACGGAGCAAATTCACTCCACTGGTTCCTCTCACATACTGGGATGCCAGTCCCTGATCTCCAAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CCA 90 bp | CTCTCTCTCTCTCTCTCTCTCCAGCTGCTATTCTCTGACTGCTTCTaGCCAAATGTAAGGTCACCAAAAGTGACCCTAAGAGCAGGTGAT | + |
|
Preference number: 1 (lower is better) Translates to: LSLSLSLQLLFSDCF*PNVRSPKVTLRAGD Trigger: ATCACCTGCTCTTAGGGTCACTTTTGGTGACCTTACATTTGGCCAGAAGCAGTCAGAGAATAGCAGCTGGAGAGAGAGAGAGAGAGAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CCA 90 bp | TTGATCTGCCCTAAGAGCTTGTCCAAGGCCAGAAACAGTTTGACCTaGGTGTGGTTGTACTTAGGGGATCAGATTCGAACACAGGATCGT | + |
|
Preference number: 1 (lower is better) Translates to: LICPKSLSKARNSLT*VWLYLGDQIRTQDR Trigger: ACGATCCTGTGTTCGAATCTGATCCCCTAAGTACAACCACACCCAGGTCAAACTGTTTCTGGCCTTGGACAAGCTCTTAGGGCAGATCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CCA 90 bp | TGCCCTAAGAGCTTGTCCAAGGCCAGAAACAGTTTGACCTGGGTGTaGTTGTACTTAGGGGATCAGATTCGAACACAGGATCGTATTTTG | + |
|
Preference number: 1 (lower is better) Translates to: CPKSLSKARNSLTWV*LYLGDQIRTQDRIL Trigger: CAAAATACGATCCTGTGTTCGAATCTGATCCCCTAAGTACAACCACACCCAGGTCAAACTGTTTCTGGCCTTGGACAAGCTCTTAGGGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CCA 90 bp | CTTATGCTCCTTGTGTCAAGTCTACACTTTCACAGCTGTAAGAACTaGAAGAAAAGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC | + |
|
Preference number: 1 (lower is better) Translates to: LMLLVSSLHFHSCKN*KKRLSLSLSLSLSL Trigger: GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCTTTTCTTCCAGTTCTTACAGCTGTGAAAGTGTAGACTTGACACAAGGAGCATAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR TCA 90 bp | CAGTGTGTTGCATTGATTTCAGTCACAGTCAGAAATCCACATTCATaGAAATACTGGGGATTGGGAAGGTATAGGGCCCAGAGTGTTGAT | + |
|
Preference number: 1 (lower is better) Translates to: QCVALISVTVRNPHS*KYWGLGRYRAQSVD Trigger: ATCAACACTCTGGGCCCTATACCTTCCCAATCCCCAGTATTTTCATGAATGTGGATTTCTGACTGTGACTGAAATCAATGCAACACACTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR-3UTR CCA 90 bp | CGAGGCATGCAGATTGCTCTGCACTCCCCCACAAGCTCCATTCCCGGGCTAAGGGGGAAGTTCTTGAGCTaGGCTACATTCAGCAGGTCA | + |
|
Preference number: 2 (lower is better) Translates to: RGMQIALHSPTSSIPGLRGKFLS*ATFSRS Trigger: TGACCTGCTGAATGTAGCCCAGCTCAAGAACTTCCC...CCTTAGCCCGGGAATGGAGCTTGTGGGGGAGTGCAGAGCAATCTGCATGCCTCG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR-3UTR GCA 90 bp | GAACAGCGGAGCTGGACTAGGAGGCATCCCCTGCTGTTGGTTCTAAGGCTACAGAAGGATAGTAGTGCCTaGCACTGGAGGCACAGACAA | + |
|
Preference number: 2 (lower is better) Translates to: EQRSWTRRHPLLLVLRLQKDSSA*HWRHRQ Trigger: TTGTCTGTGCCTCCAGTGGCAGGCACTACTATCCTT...CTGTAGCCTTAGAACCAACAGCAGGGGATGCCTCCTAGTCCAGCTCCGCTGTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CAA 90 bp | AACATGGTGGTGTTGAGGGACCCAGAGGGGAGAGGCTCTGGGGACTaGCTGGTTCTAACAGAGACTTGTGGATTTAGTCACCAAGGCTGT | + |
|
Preference number: 2 (lower is better) Translates to: NMVVLRDPEGRGSGD*LVLTETCGFSHQGC Trigger: ACAGCCTTGGTGACTAAATCCACAAGTCTCTGTTAGAACCAGCAAGTCCCCAGAGCCTCTCCCCTCTGGGTCCCTCAACACCACCATGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CAA 90 bp | CATGGGTTTGAACAGCGGAGCTGGACTAGGAGGCATCCCCTGCTGTaGGTTCTAAGGCTACAGCCTACACGTGTCAGTGACTGGTATCTT | + |
|
Preference number: 2 (lower is better) Translates to: HGFEQRSWTRRHPLL*VLRLQPTRVSDWYL Trigger: AAGATACCAGTCACTGACACGTGTAGGCTGTAGCCTTAGAACCAACAGCAGGGGATGCCTCCTAGTCCAGCTCCGCTGTTCAAACCCATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CAA 90 bp | TGCCTGCCACTGGAGGCACAGACAACAAGATGTGACCTCAAGTGCTaGGAGAATGGGCCAGTTGAAACTTCCCTGAGACATCAGGTGGTA | + |
|
Preference number: 2 (lower is better) Translates to: CLPLEAQTTRCDLKC*ENGPVETSLRHQVV Trigger: TACCACCTGATGTCTCAGGGAAGTTTCAACTGGCCCATTCTCCAAGCACTTGAGGTCACATCTTGTTGTCTGTGCCTCCAGTGGCAGGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CAA 90 bp | TGGTGGAGGACTCATGGCATGCTGTTTCCAGTGTGGGCAGCTAGGTaGTCAATGGAGATAAACTCAGTTCCAGTTGGGCCAACAAGGCTG | + |
|
Preference number: 2 (lower is better) Translates to: WWRTHGMLFPVWAAR*SMEINSVPVGPTRL Trigger: CAGCCTTGTTGGCCCAACTGGAACTGAGTTTATCTCCATTGACAACCTAGCTGCCCACACTGGAAACAGCATGCCATGAGTCCTCCACCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CAA 90 bp | GATTGGGAAGGTATAGGGCCCAGAGTGTTGATCTGCCCTAAGAGCTaGTCCAAGGCCAGAAACAGTTTGACCTGGGTGTGGTTGTACTTA | + |
|
Preference number: 2 (lower is better) Translates to: DWEGIGPRVLICPKS*SKARNSLTWVWLYL Trigger: TAAGTACAACCACACCCAGGTCAAACTGTTTCTGGCCTTGGACAAGCTCTTAGGGCAGATCAACACTCTGGGCCCTATACCTTCCCAATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR-3UTR CCA 90 bp | TGCTTCTGTCTACAAGAAACACCAGGCTACTTAGTATGTGCTACACACCTTGGCAGAGGGGAGAGGCTCTaGGGACTTGCTGGTTCTAAC | + |
|
Preference number: 2 (lower is better) Translates to: CFCLQETPGYLVCATHLGRGERL*GLAGSN Trigger: GTTAGAACCAGCAAGTCCCCAGAGCCTCTCCCCTCT...GCCAAGGTGTGTAGCACATACTAAGTAGCCTGGTGTTTCTTGTAGACAGAAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR-3UTR CCA 90 bp | GAGGCACAGACAACAAGATGTGACCTCAAGTGCTTGGAGAATGGGCCAGTTGAAATGTGCTACACACCTTaGCATGACGAGGCATGCAGA | + |
|
Preference number: 2 (lower is better) Translates to: EAQTTRCDLKCLENGPVEMCYTP*HDEACR Trigger: TCTGCATGCCTCGTCATGCCAAGGTGTGTAGCACAT...TTCAACTGGCCCATTCTCCAAGCACTTGAGGTCACATCTTGTTGTCTGTGCCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CAA 90 bp | AGAGTGTTGATCTGCCCTAAGAGCTTGTCCAAGGCCAGAAACAGTTaGACCTGGGTGTGGTTGTACTTAGGGGATCAGATTCGAACACAG | + |
|
Preference number: 2 (lower is better) Translates to: RVLICPKSLSKARNS*TWVWLYLGDQIRTQ Trigger: CTGTGTTCGAATCTGATCCCCTAAGTACAACCACACCCAGGTCAAACTGTTTCTGGCCTTGGACAAGCTCTTAGGGCAGATCAACACTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR-3UTR CCA 90 bp | ACCCTGAAGTCTTTATTACTGACCCCAGAGCCCACGTTCTCAGAACCTTCAGTTGAAAATACTGGGGATTaGGAAGGTATAGGGCCCAGA | + |
|
Preference number: 2 (lower is better) Translates to: TLKSLLLTPEPTFSEPSVENTGD*EGIGPR Trigger: TCTGGGCCCTATACCTTCCCAATCCCCAGTATTTTC...AACTGAAGGTTCTGAGAACGTGGGCTCTGGGGTCAGTAATAAAGACTTCAGGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CAA 90 bp | CTGAGACATCAGGTGGTATTCACAGTAAGAAGGTCAGCTGGGGTCTaGCTTCTGTCTACAAGAAACACCAGGCTACTTAGTATGTGCTAC | + |
|
Preference number: 2 (lower is better) Translates to: LRHQVVFTVRRSAGV*LLSTRNTRLLSMCY Trigger: GTAGCACATACTAAGTAGCCTGGTGTTTCTTGTAGACAGAAGCAAGACCCCAGCTGACCTTCTTACTGTGAATACCACCTGATGTCTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CAA 90 bp | CCTAAGAGCTTGTCCAAGGCCAGAAACAGTTTGACCTGGGTGTGGTaGTACTTAGGGGATCAGATTCGAACACAGGATCGTATTTTGACA | + |
|
Preference number: 2 (lower is better) Translates to: PKSLSKARNSLTWVW*YLGDQIRTQDRILT Trigger: TGTCAAAATACGATCCTGTGTTCGAATCTGATCCCCTAAGTACAACCACACCCAGGTCAAACTGTTTCTGGCCTTGGACAAGCTCTTAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CAA 90 bp | CACCTCTACATGAATGGTACTAAGAAATACAGCAACCTTCCCTGTTaGAGTGAGGGCAGATCTTGGAAGACACAGGAGGGCTTTGCTTTG | + |
|
Preference number: 2 (lower is better) Translates to: HLYMNGTKKYSNLPC*SEGRSWKTQEGFAL Trigger: CAAAGCAAAGCCCTCCTGTGTCTTCCAAGATCTGCCCTCACTCAAACAGGGAAGGTTGCTGTATTTCTTAGTACCATTCATGTAGAGGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR-3UTR TCA 90 bp | CTTGATGCAAAGAAATTGCATTCTGCTAAATTCCAGCATGACAGCACAGTGCTGACAGACAACAAGATGTaGCCTCAAGTGCTTGGAGAA | + |
|
Preference number: 2 (lower is better) Translates to: LDAKKLHSAKFQHDSTVLTDNKM*PQVLGE Trigger: TTCTCCAAGCACTTGAGGTCACATCTTGTTGTCTGT...CAGCACTGTGCTGTCATGCTGGAATTTAGCAGAATGCAATTTCTTTGCATCAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CAA 90 bp | CTCTTCCCCAAGTCATATCATAGTCAATTTCTTGATGCAAAGAAATaGCATTCTGCTAAATTCCAGCATGACAGCACAGTGCTGTTCTCT | + |
|
Preference number: 2 (lower is better) Translates to: LFPKSYHSQFLDAKK*HSAKFQHDSTVLFS Trigger: AGAGAACAGCACTGTGCTGTCATGCTGGAATTTAGCAGAATGCAATTTCTTTGCATCAAGAAATTGACTATGATATGACTTGGGGAAGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CAA 90 bp | CTTATACTCTCCCCCTCTTCCCCAAGTCATATCATAGTCAATTTCTaGATGCAAAGAAATTGCATTCTGCTAAATTCCAGCATGACAGCA | + |
|
Preference number: 2 (lower is better) Translates to: LILSPSSPSHIIVNF*MQRNCILLNSSMTA Trigger: TGCTGTCATGCTGGAATTTAGCAGAATGCAATTTCTTTGCATCAAGAAATTGACTATGATATGACTTGGGGAAGAGGGGGAGAGTATAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CCA 72 bp | AGGCTGCTAGGTGAACATGGGTTTGAACAGCGGAGCTaGACTAGGAGGCATCCCCTGCTGTTGGTTCTAAGG | + |
|
Preference number: 3 (lower is better) Translates to: RLLGEHGFEQRS*TRRHPLLLVLR Trigger: CCTTAGAACCAACAGCAGGGGATGCCTCCTAGTCCAGCTCCGCTGTTCAAACCCATGTTCACCTAGCAGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR GCA 72 bp | TCTTGGGATGGGCAGAGAGGGAAGGATAGTAGTGCCTaGCACTGGAGGCACAGACAACAAGATGTGACCTCA | + |
|
Preference number: 3 (lower is better) Translates to: SWDGQRGKDSSA*HWRHRQQDVTS Trigger: TGAGGTCACATCTTGTTGTCTGTGCCTCCAGTGGCAGGCACTACTATCCTTCCCTCTCTGCCCATCCCAAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR GCA 72 bp | GGGGATTGGGAAGGTATAGGGCCCAGAGTGTTGATCTaGCCTAAGAGCTTGTCCAAGGCCAGAAACAGTTTG | + |
|
Preference number: 3 (lower is better) Translates to: GDWEGIGPRVLI*PKSLSKARNSL Trigger: CAAACTGTTTCTGGCCTTGGACAAGCTCTTAGGGCAGATCAACACTCTGGGCCCTATACCTTCCCAATCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CCA 72 bp | TCAGGGACTGGCATCCCAGTATGTGAGAGGAACCAGTaGAGTGAATTTGCTCCGTGTACATGGAAGGTCAGG | + |
|
Preference number: 3 (lower is better) Translates to: SGTGIPVCERNQ*SEFAPCTWKVR Trigger: CCTGACCTTCCATGTACACGGAGCAAATTCACTCCACTGGTTCCTCTCACATACTGGGATGCCAGTCCCTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR TCA 72 bp | CTAATTGGTGTGAAGGAGTTCCCGATGACCGATAGCTaGGGGAAGTTCTTGAGCTGGGCTACATTCAGCAGG | + |
|
Preference number: 3 (lower is better) Translates to: LIGVKEFPMTDS*GKFLSWATFSR Trigger: CCTGCTGAATGTAGCCCAGCTCAAGAACTTCCCTCAGCTATCGGTCATCGGGAACTCCTTCACACCAATTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR TCA 72 bp | AAATGTAAGGTCACCAAAAGTGACCCTAAGAGCAGGTaGTGGTGGAGGACTCATGGCATGCTGTTTCCAGTG | + |
|
Preference number: 3 (lower is better) Translates to: KCKVTKSDPKSR*WWRTHGMLFPV Trigger: CACTGGAAACAGCATGCCATGAGTCCTCCACCATCACCTGCTCTTAGGGTCACTTTTGGTGACCTTACATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR GCA 72 bp | GATACAGCTAGGAAATTTCCCCAGAGGTCTGGTCCTTaGTCGAATCTGAGTCAGGCCAAACATTATGTCCAG | + |
|
Preference number: 3 (lower is better) Translates to: DTARKFPQRSGP*SNLSQAKHYVQ Trigger: CTGGACATAATGTTTGGCCTGACTCAGATTCGAGCAAGGACCAGACCTCTGGGGAAATTTCCTAGCTGTATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CCA 72 bp | CCTAAGAGCTTGTCCAAGGCCAGAAACAGTTTGACCTaGGTGTGGTTGTACTTAGGGGATCAGATTCGAACA | + |
|
Preference number: 3 (lower is better) Translates to: PKSLSKARNSLT*VWLYLGDQIRT Trigger: TGTTCGAATCTGATCCCCTAAGTACAACCACACCCAGGTCAAACTGTTTCTGGCCTTGGACAAGCTCTTAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR-3UTR CAA 90 bp | CCAGGTTTCCATAGAGCCCATGACTCCATTCAGACAACCATGACATTGTGTCTTAGGTCAGCTGGGGTCTaGCTTCTGTCTACAAGAAAC | + |
|
Preference number: 3 (lower is better) Translates to: PGFHRAHDSIQTTMTLCLRSAGV*LLSTRN Trigger: GTTTCTTGTAGACAGAAGCAAGACCCCAGCTGACCT...AAGACACAATGTCATGGTTGTCTGAATGGAGTCATGGGCTCTATGGAAACCTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR-3UTR CAA 90 bp | CCAGGTTTCCATAGAGCCCATGACTCCATTCAGACAACCATGACATTGTGTCTTTGTGACCTCAAGTGCTaGGAGAATGGGCCAGTTGAA | + |
|
Preference number: 3 (lower is better) Translates to: PGFHRAHDSIQTTMTLCLCDLKC*ENGPVE Trigger: TTCAACTGGCCCATTCTCCAAGCACTTGAGGTCACA...AAGACACAATGTCATGGTTGTCTGAATGGAGTCATGGGCTCTATGGAAACCTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR TCA 72 bp | GTTTCCATAGAGCCCATGACTCCATTCAGACAACCATaGCATTGTGTCTTATACTCTCCCCCTCTTCCCCAA | + |
|
Preference number: 3 (lower is better) Translates to: VSIEPMTPFRQP*HCVLYSPPLPQ Trigger: TTGGGGAAGAGGGGGAGAGTATAAGACACAATGTCATGGTTGTCTGAATGGAGTCATGGGCTCTATGGAAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR GCA 72 bp | CTTCCCCACAAACTGGCTCCTAACTTCACTCTCTTATaGTCCTTGTGTCAAGTCTACACTTTCACAGCTGTA | + |
|
Preference number: 3 (lower is better) Translates to: LPHKLAPNFTLL*SLCQVYTFTAV Trigger: TACAGCTGTGAAAGTGTAGACTTGACACAAGGAGCATAAGAGAGTGAAGTTAGGAGCCAGTTTGTGGGGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CCA 72 bp | CAAGGCTGTGTCAAGCCTGCACTCCCATTTGATTATTaGGATTCTAATCCAATTCCACTAGATACAGCTAGG | + |
|
Preference number: 3 (lower is better) Translates to: QGCVKPALPFDY*DSNPIPLDTAR Trigger: CCTAGCTGTATCTAGTGGAATTGGATTAGAATCCCAATAATCAAATGGGAGTGCAGGCTTGACACAGCCTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CCA 72 bp | CTTGTGTCAAGTCTACACTTTCACAGCTGTAAGAACTaGAAGAAAAGGCTCTCTCTCTCTCTCTCTCTCTCT | + |
|
Preference number: 3 (lower is better) Translates to: LVSSLHFHSCKN*KKRLSLSLSLS Trigger: AGAGAGAGAGAGAGAGAGAGAGAGCCTTTTCTTCCAGTTCTTACAGCTGTGAAAGTGTAGACTTGACACAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR TCA 72 bp | ATATGCCTGGCTCCTAGTAAGGTCATCACCTCTACATaGATGGTACTAAGAAATACAGCAACCTTCCCTGTT | + |
|
Preference number: 3 (lower is better) Translates to: ICLAPSKVITST*MVLRNTATFPV Trigger: AACAGGGAAGGTTGCTGTATTTCTTAGTACCATTCATGTAGAGGTGATGACCTTACTAGGAGCCAGGCATAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CCA 72 bp | CATCCTTCGTATTTCATATGCTTTTTGCCATATGCCTaGCTCCTAGTAAGGTCATCACCTCTACATGAATGG | + |
|
Preference number: 3 (lower is better) Translates to: HPSYFICFLPYA*LLVRSSPLHEW Trigger: CCATTCATGTAGAGGTGATGACCTTACTAGGAGCCAGGCATATGGCAAAAAGCATATGAAATACGAAGGATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR CCA 90 bp | CAACAACATGGTGGTGTTGAGGGACCCAGAGGGGAGAGGCTCTGGGGACTTGCTGGCGGGAGCTGGAGTTaGGTTTTTGTGCGTGTGGGG | + |
|
Preference number: 4 (lower is better) Translates to: QQHGGVEGPRGERLWGLAGGSWS*VFVRVG Trigger: CCCCACACGCACAAAAACCCAACTCCAGCTCCCGCC...AGCAAGTCCCCAGAGCCTCTCCCCTCTGGGTCCCTCAACACCACCATGTTGTTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR CCA 90 bp | CGAGGCATGCAGATTGCTCTGCACTCCCCCACAAGCTCCATTCCCGGGCTAAGGTCCAGCCCACCACATTaGGTCCTTCAGGTAGCCGTA | + |
|
Preference number: 4 (lower is better) Translates to: RGMQIALHSPTSSIPGLRSSPPH*VLQVAV Trigger: TACGGCTACCTGAAGGACCCAATGTGGTGGGCTGGA...CCTTAGCCCGGGAATGGAGCTTGTGGGGGAGTGCAGAGCAATCTGCATGCCTCG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CAA 72 bp | ATGTGCTACACACCTTGGCATGACGAGGCATGCAGATaGCTCTGCACTCCCCCACAAGCTCCATTCCCGGGC | + |
|
Preference number: 4 (lower is better) Translates to: MCYTPWHDEACR*LCTPPQAPFPG Trigger: GCCCGGGAATGGAGCTTGTGGGGGAGTGCAGAGCAATCTGCATGCCTCGTCATGCCAAGGTGTGTAGCACAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CAA 72 bp | GAACAGCGGAGCTGGACTAGGAGGCATCCCCTGCTGTaGGTTCTAAGGCTACAGCCTACACGTGTCAGTGAC | + |
|
Preference number: 4 (lower is better) Translates to: EQRSWTRRHPLL*VLRLQPTRVSD Trigger: GTCACTGACACGTGTAGGCTGTAGCCTTAGAACCAACAGCAGGGGATGCCTCCTAGTCCAGCTCCGCTGTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR TCA 90 bp | GAACAGCGGAGCTGGACTAGGAGGCATCCCCTGCTGTTGGTTCTAAGGCTACAGCCACCACCACCGTGGTaGAGAAAACGTAGTAGATGG | + |
|
Preference number: 4 (lower is better) Translates to: EQRSWTRRHPLLLVLRLQPPPPW*RKRSRW Trigger: CCATCTACTACGTTTTCTTCACCACGGTGGTGGTGG...CTGTAGCCTTAGAACCAACAGCAGGGGATGCCTCCTAGTCCAGCTCCGCTGTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR TCA 90 bp | AAAGTGACCCTAAGAGCAGGTGATGGTGGAGGACTCATGGCATGCTGTTTCCAGGGGCTTCTGTTGGGGTaGTGGTGTGCTGGCAAGTTC | + |
|
Preference number: 4 (lower is better) Translates to: KVTLRAGDGGGLMACCFQGLLLG*WCAGKF Trigger: GAACTTGCCAGCACACCATCACCCCAACAGAAGCCC...CTGGAAACAGCATGCCATGAGTCCTCCACCATCACCTGCTCTTAGGGTCACTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CAA 72 bp | GTGTTGAGGGACCCAGAGGGGAGAGGCTCTGGGGACTaGCTGGTTCTAACAGAGACTTGTGGATTTAGTCAC | + |
|
Preference number: 4 (lower is better) Translates to: VLRDPEGRGSGD*LVLTETCGFSH Trigger: GTGACTAAATCCACAAGTCTCTGTTAGAACCAGCAAGTCCCCAGAGCCTCTCCCCTCTGGGTCCCTCAACAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CAA 72 bp | TTCAGCAGGTCAAATTCTACCAACAACATGGTGGTGTaGAGGGACCCAGAGGGGAGAGGCTCTGGGGACTTG | + |
|
Preference number: 4 (lower is better) Translates to: FSRSNSTNNMVV*RDPEGRGSGDL Trigger: CAAGTCCCCAGAGCCTCTCCCCTCTGGGTCCCTCAACACCACCATGTTGTTGGTAGAATTTGACCTGCTGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CAA 72 bp | GGTATAGGGCCCAGAGTGTTGATCTGCCCTAAGAGCTaGTCCAAGGCCAGAAACAGTTTGACCTGGGTGTGG | + |
|
Preference number: 4 (lower is better) Translates to: GIGPRVLICPKS*SKARNSLTWVW Trigger: CCACACCCAGGTCAAACTGTTTCTGGCCTTGGACAAGCTCTTAGGGCAGATCAACACTCTGGGCCCTATACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR TCA 90 bp | CAACAACATGGTGGTGTTGAGGGACCCAGAGGGGAGAGGCTCTGGGGACTTGCTAGACCAATGAGGTGTTaGAAATATCCAGTGCCCTGT | + |
|
Preference number: 4 (lower is better) Translates to: QQHGGVEGPRGERLWGLARPMRC*KYPVPC Trigger: ACAGGGCACTGGATATTTTCAACACCTCATTGGTCT...AGCAAGTCCCCAGAGCCTCTCCCCTCTGGGTCCCTCAACACCACCATGTTGTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR CCA 90 bp | GCACAGACAACAAGATGTGACCTCAAGTGCTTGGAGAATGGGCCAGTTGAAACTCATTCACTGCCCTTGTaGCCCCTGTGGCCACAAGCC | + |
|
Preference number: 4 (lower is better) Translates to: AQTTRCDLKCLENGPVETHSLPL*PLWPQA Trigger: GGCTTGTGGCCACAGGGGCCACAAGGGCAGTGAATG...AGTTTCAACTGGCCCATTCTCCAAGCACTTGAGGTCACATCTTGTTGTCTGTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR CCA 90 bp | CAACAACATGGTGGTGTTGAGGGACCCAGAGGGGAGAGGCTCTGGGGACTTGCTACAACTGGTAAGCCCTaGAAGAAGTTCCTAATGGTG | + |
|
Preference number: 4 (lower is better) Translates to: QQHGGVEGPRGERLWGLATTGKP*KKFLMV Trigger: CACCATTAGGAACTTCTTCCAGGGCTTACCAGTTGT...AGCAAGTCCCCAGAGCCTCTCCCCTCTGGGTCCCTCAACACCACCATGTTGTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR GCA 90 bp | AGGCACAGACAACAAGATGTGACCTCAAGTGCTTGGAGAATGGGCCAGTTGAAACGTCGCAGGTGCAAATaGATAGGCCCCGAAGTTGGC | + |
|
Preference number: 4 (lower is better) Translates to: RHRQQDVTSSAWRMGQLKRRRCK*IGPEVG Trigger: GCCAACTTCGGGGCCTATGCATTTGCACCTGCGACG...TTTCAACTGGCCCATTCTCCAAGCACTTGAGGTCACATCTTGTTGTCTGTGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR CCA 90 bp | AGATGTGCTGAAAGTAACCAGGTAGTTGTGAACTTGAGAGGTCAGGCTGGACCACTCTGGGGCGGGAGCTaGAGTTGGGTTTTTGTGCGT | + |
|
Preference number: 4 (lower is better) Translates to: RCAESNQVVVNLRGQAGPLWGGS*SWVFVR Trigger: ACGCACAAAAACCCAACTCCAGCTCCCGCCCCAGAG...TGGTCCAGCCTGACCTCTCAAGTTCACAACTACCTGGTTACTTTCAGCACATCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR TCA 90 bp | GCACAGACAACAAGATGTGACCTCAAGTGCTTGGAGAATGGGCCAGTTGAAACTCCCTCTCTTGCCAGGTaGTCAAGGTGGCATTGTAGG | + |
|
Preference number: 4 (lower is better) Translates to: AQTTRCDLKCLENGPVETPSLAR*SRWHCR Trigger: CCTACAATGCCACCTTGATCACCTGGCAAGAGAGGG...AGTTTCAACTGGCCCATTCTCCAAGCACTTGAGGTCACATCTTGTTGTCTGTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR GCA 90 bp | GGGGTCTTGCTTCTGTCTACAAGAAACACCAGGCTACTTAGTATGTGCTACACACGAAGCCAGACAGGGTaGCCACAATGTCCACAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: GVLLLSTRNTRLLSMCYTRSQTG*PQCPQQ Trigger: CTGCTGTGGACATTGTGGGCACCCTGTCTGGCTTCG...TGTGTAGCACATACTAAGTAGCCTGGTGTTTCTTGTAGACAGAAGCAAGACCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR CCA 90 bp | GATTGGGAAGGTATAGGGCCCAGAGTGTTGATCTGCCCTAAGAGCTTGTCCAAGGGGTTTTTGTGCGTGTaGGGCAAGCTGATTTGGTTG | + |
|
Preference number: 4 (lower is better) Translates to: DWEGIGPRVLICPKSLSKGFLCV*GKLIWL Trigger: CAACCAAATCAGCTTGCCCCACACGCACAAAAACCC...CTTGGACAAGCTCTTAGGGCAGATCAACACTCTGGGCCCTATACCTTCCCAATC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR CCA 90 bp | TCCCTGAGACATCAGGTGGTATTCACAGTAAGAAGGTCAGCTGGGGTCTTGCTTACTTTGGGCTTCTGTTaGGGTGATGGTGTGCTGGCA | + |
|
Preference number: 4 (lower is better) Translates to: SLRHQVVFTVRRSAGVLLTLGFC*GDGVLA Trigger: TGCCAGCACACCATCACCCCAACAGAAGCCCAAAGT...AAGCAAGACCCCAGCTGACCTTCTTACTGTGAATACCACCTGATGTCTCAGGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR TCA 90 bp | ACCCTGAAGTCTTTATTACTGACCCCAGAGCCCACGTTCTCAGAACCTTCAGTTTGGTATACCACTCCTTaGAGAGGACGATGGAGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: TLKSLLLTPEPTFSEPSVWYTTP*RGRWRR Trigger: CCTCCTCCATCGTCCTCTTCAAGGAGTGGTATACCA...AACTGAAGGTTCTGAGAACGTGGGCTCTGGGGTCAGTAATAAAGACTTCAGGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR CCA 90 bp | TTTGACAGTGCTACGTACACTGAAGATCAAGTTTCCCCTTCCCCACAAACTGGCCATAGGCCCCGAAGTTaGCAACTTCTCCAGCAGACA | + |
|
Preference number: 4 (lower is better) Translates to: FDSATYTEDQVSPSPQTGHRPRS*QLLQQT Trigger: TGTCTGCTGGAGAAGTTGCCAACTTCGGGGCCTATG...GCCAGTTTGTGGGGAAGGGGAAACTTGATCTTCAGTGTACGTAGCACTGTCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CAA 72 bp | AACAGATGTGCTGAAAGTAACCAGGTAGTTGTGAACTaGAGAGGTCAGGCTGGACCATTGGCTGCCTCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: NRCAESNQVVVN*RGQAGPLAASS Trigger: AGAGGAGGCAGCCAATGGTCCAGCCTGACCTCTCAAGTTCACAACTACCTGGTTACTTTCAGCACATCTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CAA 72 bp | ACTCATGGCATGCTGTTTCCAGTGTGGGCAGCTAGGTaGTCAATGGAGATAAACTCAGTTCCAGTTGGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: THGMLFPVWAAR*SMEINSVPVGP Trigger: TGGCCCAACTGGAACTGAGTTTATCTCCATTGACAACCTAGCTGCCCACACTGGAAACAGCATGCCATGAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR GCA 90 bp | CCAGGTTTCCATAGAGCCCATGACTCCATTCAGACAACCATGACATTGTGTCTTTTCCTGACCCTCTCTTaGCAGGTGATCAAGGTGGCA | + |
|
Preference number: 4 (lower is better) Translates to: PGFHRAHDSIQTTMTLCLFLTLS*QVIKVA Trigger: TGCCACCTTGATCACCTGGCAAGAGAGGGTCAGGAA...AAGACACAATGTCATGGTTGTCTGAATGGAGTCATGGGCTCTATGGAAACCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR GCA 90 bp | GCACAGACAACAAGATGTGACCTCAAGTGCTTGGAGAATGGGCCAGTTGAAACTCTTGGAAGCCATCTCTaGAACAGTGGTGACCTTCTC | + |
|
Preference number: 4 (lower is better) Translates to: AQTTRCDLKCLENGPVETLGSHL*NSGDLL Trigger: GAGAAGGTCACCACTGTTGCAGAGATGGCTTCCAAG...AGTTTCAACTGGCCCATTCTCCAAGCACTTGAGGTCACATCTTGTTGTCTGTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR GCA 90 bp | AGGCACAGACAACAAGATGTGACCTCAAGTGCTTGGAGAATGGGCCAGTTGAAAGGAGTTGGGTTTTTGTaGGTGTGGGGCAAGCTGATT | + |
|
Preference number: 4 (lower is better) Translates to: RHRQQDVTSSAWRMGQLKGVGFL*VWGKLI Trigger: AATCAGCTTGCCCCACACGCACAAAAACCCAACTCC...TTTCAACTGGCCCATTCTCCAAGCACTTGAGGTCACATCTTGTTGTCTGTGCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CAA 72 bp | ATCTGCCCTAAGAGCTTGTCCAAGGCCAGAAACAGTTaGACCTGGGTGTGGTTGTACTTAGGGGATCAGATT | + |
|
Preference number: 4 (lower is better) Translates to: ICPKSLSKARNS*TWVWLYLGDQI Trigger: AATCTGATCCCCTAAGTACAACCACACCCAGGTCAAACTGTTTCTGGCCTTGGACAAGCTCTTAGGGCAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR CCA 90 bp | TCCCTGAGACATCAGGTGGTATTCACAGTAAGAAGGTCAGCTGGGGTCTTGCTTGGGGTGATGGTGTGCTaGCAAGTTCTATGTTATCTA | + |
|
Preference number: 4 (lower is better) Translates to: SLRHQVVFTVRRSAGVLLGVMVC*QVLCYL Trigger: TAGATAACATAGAACTTGCCAGCACACCATCACCCC...AAGCAAGACCCCAGCTGACCTTCTTACTGTGAATACCACCTGATGTCTCAGGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR TCA 90 bp | TTGATGCAAAGAAATTGCATTCTGCTAAATTCCAGCATGACAGCACAGTGCTGTCTTTGGGGGCATGTATaGCCATCACTGTGCTGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: LMQRNCILLNSSMTAQCCLWGHV*PSLCCQ Trigger: CTGGCAGCACAGTGATGGTCATACATGCCCCCAAAG...ACAGCACTGTGCTGTCATGCTGGAATTTAGCAGAATGCAATTTCTTTGCATCAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR GCA 90 bp | TCCCTGAGACATCAGGTGGTATTCACAGTAAGAAGGTCAGCTGGGGTCTTGCTTGTTGAAAATATCCAGTaGCCTGTTGAGGAAGTTGAC | + |
|
Preference number: 4 (lower is better) Translates to: SLRHQVVFTVRRSAGVLLVENIQ*PVEEVD Trigger: GTCAACTTCCTCAACAGGGCACTGGATATTTTCAAC...AAGCAAGACCCCAGCTGACCTTCTTACTGTGAATACCACCTGATGTCTCAGGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR CCA 90 bp | GCACAGACAACAAGATGTGACCTCAAGTGCTTGGAGAATGGGCCAGTTGAAACTTGGGGCAAGCTGATTTaGTTGATGTCCAAATCCTTG | + |
|
Preference number: 4 (lower is better) Translates to: AQTTRCDLKCLENGPVETWGKLI*LMSKSL Trigger: CAAGGATTTGGACATCAACCAAATCAGCTTGCCCCA...AGTTTCAACTGGCCCATTCTCCAAGCACTTGAGGTCACATCTTGTTGTCTGTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CAA 72 bp | CATAGAGCCCATGACTCCATTCAGACAACCATGACATaGTGTCTTATACTCTCCCCCTCTTCCCCAAGTCAT | + |
|
Preference number: 4 (lower is better) Translates to: HRAHDSIQTTMT*CLILSPSSPSH Trigger: ATGACTTGGGGAAGAGGGGGAGAGTATAAGACACAATGTCATGGTTGTCTGAATGGAGTCATGGGCTCTATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR CCA 90 bp | ACCCTGAAGTCTTTATTACTGACCCCAGAGCCCACGTTCTCAGAACCTTCAGTTAGAAAACGTAGTAGATaGGGAAGACCAATGAGGTGT | + |
|
Preference number: 4 (lower is better) Translates to: TLKSLLLTPEPTFSEPSVRKRSR*GRPMRC Trigger: ACACCTCATTGGTCTTCCCCATCTACTACGTTTTCT...AACTGAAGGTTCTGAGAACGTGGGCTCTGGGGTCAGTAATAAAGACTTCAGGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR CCA 90 bp | CAAAGAAATTGCATTCTGCTAAATTCCAGCATGACAGCACAGTGCTGTTCTCTTCCTTTGCCCGTAACGTaGGGCAACAATGAAGATGAG | + |
|
Preference number: 4 (lower is better) Translates to: QRNCILLNSSMTAQCCSLPLPVT*GNNEDE Trigger: CTCATCTTCATTGTTGCCCCACGTTACGGGCAAAGG...AAGAGAACAGCACTGTGCTGTCATGCTGGAATTTAGCAGAATGCAATTTCTTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CAA 72 bp | CACAAACTGGCTCCTAACTTCACTCTCTTATGCTCCTaGTGTCAAGTCTACACTTTCACAGCTGTAAGAACT | + |
|
Preference number: 4 (lower is better) Translates to: HKLAPNFTLLCS*CQVYTFTAVRT Trigger: AGTTCTTACAGCTGTGAAAGTGTAGACTTGACACAAGGAGCATAAGAGAGTGAAGTTAGGAGCCAGTTTGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CAA 72 bp | GTGAATTTGCTCCGTGTACATGGAAGGTCAGGACATTaGTCAAGTAAACACACCCTGAAGTCTTTATTACTG | + |
|
Preference number: 4 (lower is better) Translates to: VNLLRVHGRSGH*SSKHTLKSLLL Trigger: CAGTAATAAAGACTTCAGGGTGTGTTTACTTGACAAATGTCCTGACCTTCCATGTACACGGAGCAAATTCAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CAA 72 bp | CTAAGAAAGCATCATCCTTCGTATTTCATATGCTTTTaGCCATATGCCTGGCTCCTAGTAAGGTCATCACCT | + |
|
Preference number: 4 (lower is better) Translates to: LRKHHPSYFICF*PYAWLLVRSSP Trigger: AGGTGATGACCTTACTAGGAGCCAGGCATATGGCAAAAAGCATATGAAATACGAAGGATGATGCTTTCTTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| 3UTR CAA 72 bp | TCCCCCTCTTCCCCAAGTCATATCATAGTCAATTTCTaGATGCAAAGAAATTGCATTCTGCTAAATTCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: SPSSPSHIIVNF*MQRNCILLNSS Trigger: GCTGGAATTTAGCAGAATGCAATTTCTTTGCATCAAGAAATTGACTATGATATGACTTGGGGAAGAGGGGGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS TCA 90 bp | CTCTCACGATCTGACAGAGGACCTCCTGAGAGGAGCAGTAGAGGCTaGCTATGGAGCCGTTCTCGCAGCTGCCATTGGCGTTGGCGACCC | + |
|
Preference number: 5 (lower is better) Translates to: LSRSDRGPPERSSRG*LWSRSRSCHWRWRP Trigger: GGGTCGCCAACGCCAATGGCAGCTGCGAGAACGGCTCCATAGTCAGCCTCTACTGCTCCTCTCAGGAGGTCCTCTGTCAGATCGTGAGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS GCA 90 bp | TATGAGGACGCTCAGTGCTCCCAGCGGTGTGACAACCGTCGCAGGTaGAAATGCATAGGCCCCGAAGTTGGCAACTTCTCCAGCAGACAT | + |
|
Preference number: 5 (lower is better) Translates to: YEDAQCSQRCDNRRR*KCIGPEVGNFSSRH Trigger: ATGTCTGCTGGAGAAGTTGCCAACTTCGGGGCCTATGCATTTGCACCTGCGACGGTTGTCACACCGCTGGGAGCACTGAGCGTCCTCATA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR CAA 90 bp | AAAGTGACCCTAAGAGCAGGTGATGGTGGAGGACTCATGGCATGCTGTTTCCAGCTCCATTCACTGCCCTaGTGGCCCCTGTGGCCACAA | + |
|
Preference number: 5 (lower is better) Translates to: KVTLRAGDGGGLMACCFQLHSLP*WPLWPQ Trigger: TTGTGGCCACAGGGGCCACAAGGGCAGTGAATGGAG...CTGGAAACAGCATGCCATGAGTCCTCCACCATCACCTGCTCTTAGGGTCACTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR CAA 90 bp | TCCCTGAGACATCAGGTGGTATTCACAGTAAGAAGGTCAGCTGGGGTCTTGCTTGGGCGGGAGCTGGAGTaGGGTTTTTGTGCGTGTGGG | + |
|
Preference number: 5 (lower is better) Translates to: SLRHQVVFTVRRSAGVLLGRELE*GFCACG Trigger: CCCACACGCACAAAAACCCAACTCCAGCTCCCGCCC...AAGCAAGACCCCAGCTGACCTTCTTACTGTGAATACCACCTGATGTCTCAGGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR CAA 90 bp | TCCCTGAGACATCAGGTGGTATTCACAGTAAGAAGGTCAGCTGGGGTCTTGCTTCTTCCTGACCCTCTCTaGCCAGGTGATCAAGGTGGC | + |
|
Preference number: 5 (lower is better) Translates to: SLRHQVVFTVRRSAGVLLLPDPL*PGDQGG Trigger: GCCACCTTGATCACCTGGCAAGAGAGGGTCAGGAAG...AAGCAAGACCCCAGCTGACCTTCTTACTGTGAATACCACCTGATGTCTCAGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR CAA 90 bp | TCCCTGAGACATCAGGTGGTATTCACAGTAAGAAGGTCAGCTGGGGTCTTGCTTTTCCAGCCCACCACATaGGGTCCTTCAGGTAGCCGT | + |
|
Preference number: 5 (lower is better) Translates to: SLRHQVVFTVRRSAGVLLFQPTT*GPSGSR Trigger: ACGGCTACCTGAAGGACCCAATGTGGTGGGCTGGAA...AAGCAAGACCCCAGCTGACCTTCTTACTGTGAATACCACCTGATGTCTCAGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR CAA 90 bp | GTAGTTGTGAACTTGAGAGGTCAGGCTGGACCATTGGCTGCCTCCTCTTACTCAGTGACCTTCTCCTCTTaGGGGGCATGTATGACCATC | + |
|
Preference number: 5 (lower is better) Translates to: VVVNLRGQAGPLAASSYSVTFSS*GACMTI Trigger: GATGGTCATACATGCCCCCAAAGAGGAGAAGGTCAC...TGAGTAAGAGGAGGCAGCCAATGGTCCAGCCTGACCTCTCAAGTTCACAACTAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR CAA 90 bp | AAAGTGACCCTAAGAGCAGGTGATGGTGGAGGACTCATGGCATGCTGTTTCCAGATATCCAGTGCCCTGTaGAGGAAGTTGACCTGGATG | + |
|
Preference number: 5 (lower is better) Translates to: KVTLRAGDGGGLMACCFQISSAL*RKLTWM Trigger: CATCCAGGTCAACTTCCTCAACAGGGCACTGGATAT...CTGGAAACAGCATGCCATGAGTCCTCCACCATCACCTGCTCTTAGGGTCACTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR CAA 90 bp | GTAGTTGTGAACTTGAGAGGTCAGGCTGGACCATTGGCTGCCTCCTCTTACTCAATGGTATACCACTCCTaGAAGAGGACGATGGAGGAG | + |
|
Preference number: 5 (lower is better) Translates to: VVVNLRGQAGPLAASSYSMVYHS*KRTMEE Trigger: CTCCTCCATCGTCCTCTTCAAGGAGTGGTATACCAT...TGAGTAAGAGGAGGCAGCCAATGGTCCAGCCTGACCTCTCAAGTTCACAACTAC 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR CAA 90 bp | GGGGTCTTGCTTCTGTCTACAAGAAACACCAGGCTACTTAGTATGTGCTACACAGCTGGAGTTGGGTTTTaGTGCGTGTGGGGCAAGCTG | + |
|
Preference number: 5 (lower is better) Translates to: GVLLLSTRNTRLLSMCYTAGVGF*CVWGKL Trigger: CAGCTTGCCCCACACGCACAAAAACCCAACTCCAGC...TGTGTAGCACATACTAAGTAGCCTGGTGTTTCTTGTAGACAGAAGCAAGACCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS GCA 90 bp | AGCAAAGACGATGAACCCTGTGTCTTTCATCTTGGAAGCCATCTCTaGAACAGTGGTGACCTTCTCCTCTTTGGGGGCATGTATGACCAT | + |
|
Preference number: 5 (lower is better) Translates to: SKDDEPCVFHLGSHL*NSGDLLLFGGMYDH Trigger: ATGGTCATACATGCCCCCAAAGAGGAGAAGGTCACCACTGTTGCAGAGATGGCTTCCAAGATGAAAGACACAGGGTTCATCGTCTTTGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR CAA 90 bp | AAAGTGACCCTAAGAGCAGGTGATGGTGGAGGACTCATGGCATGCTGTTTCCAGAAGACCAATGAGGTGTaGAAAATATCCAGTGCCCTG | + |
|
Preference number: 5 (lower is better) Translates to: KVTLRAGDGGGLMACCFQKTNEV*KISSAL Trigger: CAGGGCACTGGATATTTTCAACACCTCATTGGTCTT...CTGGAAACAGCATGCCATGAGTCCTCCACCATCACCTGCTCTTAGGGTCACTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS CCA 90 bp | GGAGCAGATGATGATGTAAATGAGGATATTCCTTTGCCCGTAACGTaGGGCAACAATGAAGATGAGGATGAGGCAAGACACCACCAGAAG | + |
|
Preference number: 5 (lower is better) Translates to: GADDDVNEDIPLPVT*GNNEDEDEARHHQK Trigger: CTTCTGGTGGTGTCTTGCCTCATCCTCATCTTCATTGTTGCCCCACGTTACGGGCAAAGGAATATCCTCATTTACATCATCATCTGCTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR CAA 90 bp | TTGATGCAAAGAAATTGCATTCTGCTAAATTCCAGCATGACAGCACAGTGCTGTAATGAGGATATTCCTTaGCCCGTAACGTGGGGCAAC | + |
|
Preference number: 5 (lower is better) Translates to: LMQRNCILLNSSMTAQCCNEDIP*PVTWGN Trigger: GTTGCCCCACGTTACGGGCAAAGGAATATCCTCATT...ACAGCACTGTGCTGTCATGCTGGAATTTAGCAGAATGCAATTTCTTTGCATCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS-3UTR CAA 90 bp | TTGATGCAAAGAAATTGCATTCTGCTAAATTCCAGCATGACAGCACAGTGCTGTCCTGTGTCTTTCATCTaGGAAGCCATCTCTGCAACA | + |
|
Preference number: 5 (lower is better) Translates to: LMQRNCILLNSSMTAQCCPVSFI*EAISAT Trigger: TGTTGCAGAGATGGCTTCCAAGATGAAAGACACAGG...ACAGCACTGTGCTGTCATGCTGGAATTTAGCAGAATGCAATTTCTTTGCATCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS GCA 72 bp | CATTGGGTCCTTCAGGTAGCCGTAGCCTCCATTCACTaGCCTTGTGGCCCCTGTGGCCACAAGCCGAATGAG | + |
|
Preference number: 6 (lower is better) Translates to: HWVLQVAVASIH*PCGPCGHKPNE Trigger: CTCATTCGGCTTGTGGCCACAGGGGCCACAAGGGCAGTGAATGGAGGCTACGGCTACCTGAAGGACCCAATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS GCA 72 bp | GCTCAGTGCTCCCAGCGGTGTGACAACCGTCGCAGGTaGAAATGCATAGGCCCCGAAGTTGGCAACTTCTCC | + |
|
Preference number: 6 (lower is better) Translates to: AQCSQRCDNRRR*KCIGPEVGNFS Trigger: GGAGAAGTTGCCAACTTCGGGGCCTATGCATTTGCACCTGCGACGGTTGTCACACCGCTGGGAGCACTGAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS TCA 72 bp | TCTGACAGAGGACCTCCTGAGAGGAGCAGTAGAGGCTaGCTATGGAGCCGTTCTCGCAGCTGCCATTGGCGT | + |
|
Preference number: 6 (lower is better) Translates to: SDRGPPERSSRG*LWSRSRSCHWR Trigger: ACGCCAATGGCAGCTGCGAGAACGGCTCCATAGTCAGCCTCTACTGCTCCTCTCAGGAGGTCCTCTGTCAGA 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS TCA 72 bp | CCACAATGTCCACAGCAGACATGGTATACCACTCCTTaGAGAGGACGATGGAGGAGGCCACCACCACCGTGG | + |
|
Preference number: 6 (lower is better) Translates to: PQCPQQTWYTTP*RGRWRRPPPPW Trigger: CCACGGTGGTGGTGGCCTCCTCCATCGTCCTCTTCAAGGAGTGGTATACCATGTCTGCTGTGGACATTGTGG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS CAA 72 bp | CCCTGGAAGAAGTTCCTAATGGTGACACCAAGCCCCTaGACGGCAGTCACGGAGAAGGATCCGATCACGGAG | + |
|
Preference number: 6 (lower is better) Translates to: PWKKFLMVTPSP*TAVTEKDPITE Trigger: CTCCGTGATCGGATCCTTCTCCGTGACTGCCGTCAAGGGGCTTGGTGTCACCATTAGGAACTTCTTCCAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS CAA 72 bp | GAAGCCATCTCTGCAACAGTGGTGACCTTCTCCTCTTaGGGGGCATGTATGACCATCACTGTGCTGCCAGCC | + |
|
Preference number: 6 (lower is better) Translates to: EAISATVVTFSS*GACMTITVLPA Trigger: GGCTGGCAGCACAGTGATGGTCATACATGCCCCCAAAGAGGAGAAGGTCACCACTGTTGCAGAGATGGCTTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS CAA 90 bp | ACTGGTAAGCCCTGGAAGAAGTTCCTAATGGTGACACCAAGCCCCTaGACGGCAGTCACGGAGAAGGATCCGATCACGGAGCAGATGATG | + |
|
Preference number: 6 (lower is better) Translates to: TGKPWKKFLMVTPSP*TAVTEKDPITEQMM Trigger: CATCATCTGCTCCGTGATCGGATCCTTCTCCGTGACTGCCGTCAAGGGGCTTGGTGTCACCATTAGGAACTTCTTCCAGGGCTTACCAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS CCA 72 bp | TCTGGGGCGGGAGCTGGAGTTGGGTTTTTGTGCGTGTaGGGCAAGCTGATTTGGTTGATGTCCAAATCCTTG | + |
|
Preference number: 6 (lower is better) Translates to: SGAGAGVGFLCV*GKLIWLMSKSL Trigger: CAAGGATTTGGACATCAACCAAATCAGCTTGCCCCACACGCACAAAAACCCAACTCCAGCTCCCGCCCCAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS CAA 90 bp | GAGGCCCACACCGATGTAGAAGCCATACTTCTTCCTGACCCTCTCTaGCCAGGTGATCAAGGTGGCATTGTAGGGCTCTTCAGGACTGAT | + |
|
Preference number: 6 (lower is better) Translates to: EAHTDVEAILLPDPL*PGDQGGIVGLFRTD Trigger: ATCAGTCCTGAAGAGCCCTACAATGCCACCTTGATCACCTGGCAAGAGAGGGTCAGGAAGAAGTATGGCTTCTACATCGGTGTGGGCCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS CAA 72 bp | AGGACAGCAAAGACGATGAACCCTGTGTCTTTCATCTaGGAAGCCATCTCTGCAACAGTGGTGACCTTCTCC | + |
|
Preference number: 6 (lower is better) Translates to: RTAKTMNPVSFI*EAISATVVTFS Trigger: GGAGAAGGTCACCACTGTTGCAGAGATGGCTTCCAAGATGAAAGACACAGGGTTCATCGTCTTTGCTGTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS CAA 90 bp | GGATCCGATCACGGAGCAGATGATGATGTAAATGAGGATATTCCTTaGCCCGTAACGTGGGGCAACAATGAAGATGAGGATGAGGCAAGA | + |
|
Preference number: 6 (lower is better) Translates to: GSDHGADDDVNEDIP*PVTWGNNEDEDEAR Trigger: TCTTGCCTCATCCTCATCTTCATTGTTGCCCCACGTTACGGGCAAAGGAATATCCTCATTTACATCATCATCTGCTCCGTGATCGGATCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS CAA 90 bp | AAGACCAATGAGGTGTTGAAAATATCCAGTGCCCTGTTGAGGAAGTaGACCTGGATGATGATAGAAAGACCCAGGATGAGGGACAGGATG | + |
|
Preference number: 6 (lower is better) Translates to: KTNEVLKISSALLRK*TWMMIERPRMRDRM Trigger: CATCCTGTCCCTCATCCTGGGTCTTTCTATCATCATCCAGGTCAACTTCCTCAACAGGGCACTGGATATTTTCAACACCTCATTGGTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS CAA 72 bp | GAGGTGTTGAAAATATCCAGTGCCCTGTTGAGGAAGTaGACCTGGATGATGATAGAAAGACCCAGGATGAGG | + |
|
Preference number: 6 (lower is better) Translates to: EVLKISSALLRK*TWMMIERPRMR Trigger: CCTCATCCTGGGTCTTTCTATCATCATCCAGGTCAACTTCCTCAACAGGGCACTGGATATTTTCAACACCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS CAA 72 bp | TGGAGTTGGGTTTTTGTGCGTGTGGGGCAAGCTGATTaGGTTGATGTCCAAATCCTTGAAAGCGTGAAGCAT | + |
|
Preference number: 6 (lower is better) Translates to: WSWVFVRVGQAD*VDVQILESVKH Trigger: ATGCTTCACGCTTTCAAGGATTTGGACATCAACCAAATCAGCTTGCCCCACACGCACAAAAACCCAACTCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS CAA 72 bp | CACGGAGCAGATGATGATGTAAATGAGGATATTCCTTaGCCCGTAACGTGGGGCAACAATGAAGATGAGGAT | + |
|
Preference number: 6 (lower is better) Translates to: HGADDDVNEDIP*PVTWGNNEDED Trigger: ATCCTCATCTTCATTGTTGCCCCACGTTACGGGCAAAGGAATATCCTCATTTACATCATCATCTGCTCCGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||
| CDS TCA 72 bp | AGAATCGGTCATAAATACTTTGGGCTTCTGTTGGGGTaGTGGTGTGCTGGCAAGTTCTATGTTATCTACAAG | + |
|
Preference number: 6 (lower is better) Translates to: RIGHKYFGLLLG*WCAGKFYVIYK Trigger: CTTGTAGATAACATAGAACTTGCCAGCACACCATCACCCCAACAGAAGCCCAAAGTATTTATGACCGATTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020679.3 |
||