Pregenerated sensors for NIPAL2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038879Ensembl transcript IDs: ENSMUST00000040791.9, ENSMUST00000228073.2, ENSMUST00000228679.2
Found 97 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TACAATAAATTTGTCCCCTCCCTGCCCACATTCGATTCCCTTTACTaGAACCCTCGCACCAGGCCTGGCCAGAGATCTTTGTGGAAAGTC | + |
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Preference number: 1 (lower is better) Translates to: YNKFVPSLPTFDSLY*NPRTRPGQRSLWKV Trigger: GACTTTCCACAAAGATCTCTGGCCAGGCCTGGTGCGAGGGTTCCAGTAAAGGGAATCGAATGTGGGCAGGGAGGGGACAAATTTATTGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR CCA 90 bp | ATAAGGAGAAACCATTGTGTTAGACATGGCAGGTGGTCACAGTCATaGGGACACAGGCCACCTACGCTCAGGTTTTACCTCATGGCCATA | + |
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Preference number: 1 (lower is better) Translates to: IRRNHCVRHGRWSQS*GHRPPTLRFYLMAI Trigger: TATGGCCATGAGGTAAAACCTGAGCGTAGGTGGCCTGTGTCCCCATGACTGTGACCACCTGCCATGTCTAACACAATGGTTTCTCCTTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR CCA 90 bp | GCCAAGGGTTCCCAGCTTACAATGCCAGAAGGAATGGGATGGCTTTaGTTGTCAGGCACTAAGTACTACAGAGAAAGACGAACAAAACAT | + |
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Preference number: 1 (lower is better) Translates to: AKGSQLTMPEGMGWL*LSGTKYYRERRTKH Trigger: ATGTTTTGTTCGTCTTTCTCTGTAGTACTTAGTGCCTGACAACCAAAGCCATCCCATTCCTTCTGGCATTGTAAGCTGGGAACCCTTGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR TCA 90 bp | ATTGTAGCACAGGGTAAGCAAGCATTTAAACTCAGCTGTCAGACCTaGGAGATCTGTGTGTTAGTCAACTGCATGAGAGATAGCTCCCAA | + |
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Preference number: 1 (lower is better) Translates to: IVAQGKQAFKLSCQT*EICVLVNCMRDSSQ Trigger: TTGGGAGCTATCTCTCATGCAGTTGACTAACACACAGATCTCTCAGGTCTGACAGCTGAGTTTAAATGCTTGCTTACCCTGTGCTACAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR TCA 90 bp | AGGACAAGCACATCGAATCTTCCTTTAAAGACTAAGGTTGTAGTGTaGGAGGGTGTTTTTAAAGCCAACAAGCAGATTCTGCAAGCCACA | + |
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Preference number: 1 (lower is better) Translates to: RTSTSNLPLKTKVVV*EGVFKANKQILQAT Trigger: TGTGGCTTGCAGAATCTGCTTGTTGGCTTTAAAAACACCCTCTCACACTACAACCTTAGTCTTTAAAGGAAGATTCGATGTGCTTGTCCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR TCA 90 bp | GTTTACATATTGTCCATGGCTACATTTATGCTATTATGGAACAGCTaGGTAGTGGGGGACAGATACCATATGGACAACACAAACCCTCAA | + |
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Preference number: 1 (lower is better) Translates to: VYILSMATFMLLWNS*VVGDRYHMDNTNPQ Trigger: TTGAGGGTTTGTGTTGTCCATATGGTATCTGTCCCCCACTACTCAGCTGTTCCATAATAGCATAAATGTAGCCATGGACAATATGTAAAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR CCA 90 bp | ATCCAGAGTTCAGAAACTATGCGTGGGCTTTGGGATATTCCAGTTTaGTCGGGAGCTCAGGTTATAATAGGAAAAATTAAAAGACTAGAA | + |
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Preference number: 1 (lower is better) Translates to: IQSSETMRGLWDIPV*SGAQVIIGKIKRLE Trigger: TTCTAGTCTTTTAATTTTTCCTATTATAACCTGAGCTCCCGACCAAACTGGAATATCCCAAAGCCCACGCATAGTTTCTGAACTCTGGAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR-3UTR CCA 90 bp | CTGGAACCCTCGCACCAGGCCTGGCCAGAGATCTTTGTGGAAAGTCTCTGGTACAGGTGGTCACAGTCATaGGGACACAGGCCACCTACG | + |
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Preference number: 2 (lower is better) Translates to: LEPSHQAWPEIFVESLWYRWSQS*GHRPPT Trigger: CGTAGGTGGCCTGTGTCCCCATGACTGTGACCACCT...GTACCAGAGACTTTCCACAAAGATCTCTGGCCAGGCCTGGTGCGAGGGTTCCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR-3UTR GCA 90 bp | GTCATGGGGACACAGGCCACCTACGCTCAGGTTTTACCTCATGGCCATATTCTAATTGCTAGGGAGAGATaGAGGGTGTGGGGAGCACTC | + |
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Preference number: 2 (lower is better) Translates to: VMGTQATYAQVLPHGHILIARER*RVWGAL Trigger: GAGTGCTCCCCACACCCTGCATCTCTCCCTAGCAAT...TAGAATATGGCCATGAGGTAAAACCTGAGCGTAGGTGGCCTGTGTCCCCATGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR-3UTR TCA 90 bp | CTGGAACCCTCGCACCAGGCCTGGCCAGAGATCTTTGTGGAAAGTCTCTGGTACTATATGCCTCAGAGGTaGGCACAGTCATATGTCGTA | + |
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Preference number: 2 (lower is better) Translates to: LEPSHQAWPEIFVESLWYYMPQR*AQSYVV Trigger: TACGACATATGACTGTGCTCACCTCTGAGGCATATA...GTACCAGAGACTTTCCACAAAGATCTCTGGCCAGGCCTGGTGCGAGGGTTCCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR-3UTR TCA 90 bp | CTGGAACCCTCGCACCAGGCCTGGCCAGAGATCTTTGTGGAAAGTCTCTGGTACTTTAACAGAATTGGCTaGGACAGTGACTTGCCATAC | + |
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Preference number: 2 (lower is better) Translates to: LEPSHQAWPEIFVESLWYFNRIG*DSDLPY Trigger: GTATGGCAAGTCACTGTCTCAGCCAATTCTGTTAAA...GTACCAGAGACTTTCCACAAAGATCTCTGGCCAGGCCTGGTGCGAGGGTTCCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR-3UTR GCA 90 bp | TGGAACCCTCGCACCAGGCCTGGCCAGAGATCTTTGTGGAAAGTCTCTGGTACTCACAGAACGAACATGTaGAATCCTTTAAAAGGTGGT | + |
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Preference number: 2 (lower is better) Translates to: WNPRTRPGQRSLWKVSGTHRTNM*NPLKGG Trigger: ACCACCTTTTAAAGGATTGCACATGTTCGTTCTGTG...AGTACCAGAGACTTTCCACAAAGATCTCTGGCCAGGCCTGGTGCGAGGGTTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR-3UTR GCA 90 bp | GGGGACACAGGCCACCTACGCTCAGGTTTTACCTCATGGCCATATTCTATGGCCGAAGTGAATCTAATGTaGACACATGTCAGCATGAAA | + |
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Preference number: 2 (lower is better) Translates to: GDTGHLRSGFTSWPYSMAEVNLM*THVSMK Trigger: TTTCATGCTGACATGTGTGCACATTAGATTCACTTC...GGCCATAGAATATGGCCATGAGGTAAAACCTGAGCGTAGGTGGCCTGTGTCCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR-3UTR GCA 90 bp | GAGCCTCTCAGAGCCAACACACTGCCCCCACCCAGTAAAACATTGTTAATTATAGCTGAGACAGTGACTTaGCATACAACAGGGAAAAAG | + |
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Preference number: 2 (lower is better) Translates to: EPLRANTLPPPSKTLLIIAETVT*HTTGKK Trigger: CTTTTTCCCTGTTGTATGGCAAGTCACTGTCTCAGC...TATAATTAACAATGTTTTACTGGGTGGGGGCAGTGTGTTGGCTCTGAGAGGCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR-3UTR TCA 90 bp | CATAGAAGGCGCCCAAGGACAAGCACATCGAATCTTCCTTTAAAGACTAAGGTTGTGCACATTTTTGTGTaGCATTCTTGTTCCAGCAGC | + |
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Preference number: 2 (lower is better) Translates to: HRRRPRTSTSNLPLKTKVVHIFV*HSCSSS Trigger: GCTGCTGGAACAAGAATGTCACACAAAAATGTGCAC...AACCTTAGTCTTTAAAGGAAGATTCGATGTGCTTGTCCTTGGGCGCCTTCTATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR-3UTR CCA 90 bp | AATAGTCAGATGAGCCAAATGTTGGCCAAGGGTTCCCAGCTTACAATGCCAGAATCAGGTTTTACCTCATaGCCATATTCTATGGCCAGA | + |
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Preference number: 2 (lower is better) Translates to: NSQMSQMLAKGSQLTMPESGFTS*PYSMAR Trigger: TCTGGCCATAGAATATGGCCATGAGGTAAAACCTGA...TTCTGGCATTGTAAGCTGGGAACCCTTGGCCAACATTTGGCTCATCTGACTATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR-3UTR TCA 90 bp | TGGGGGACAGATACCATATGGACAACACAAACCCTCAAATATTTACTTCGTAAGAATTGGCTGAGACAGTaGCTTGCCATACAACAGGGA | + |
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Preference number: 2 (lower is better) Translates to: WGTDTIWTTQTLKYLLRKNWLRQ*LAIQQG Trigger: TCCCTGTTGTATGGCAAGTCACTGTCTCAGCCAATT...CTTACGAAGTAAATATTTGAGGGTTTGTGTTGTCCATATGGTATCTGTCCCCCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR-3UTR TCA 90 bp | TGGGGGACAGATACCATATGGACAACACAAACCCTCAAATATTTACTTCGTAAGTTTAAAAGGTGGTATTaGATAGCAGGCCAACAGCCA | + |
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Preference number: 2 (lower is better) Translates to: WGTDTIWTTQTLKYLLRKFKRWY*IAGQQP Trigger: TGGCTGTTGGCCTGCTATTCAATACCACCTTTTAAA...CTTACGAAGTAAATATTTGAGGGTTTGTGTTGTCCATATGGTATCTGTCCCCCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR-3UTR TCA 90 bp | TGGGGGACAGATACCATATGGACAACACAAACCCTCAAATATTTACTTCGTAAGACTAAGGTTGTAGTGTaGGAGGGTGTTTTTAAAGCC | + |
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Preference number: 2 (lower is better) Translates to: WGTDTIWTTQTLKYLLRKTKVVV*EGVFKA Trigger: GGCTTTAAAAACACCCTCTCACACTACAACCTTAGT...CTTACGAAGTAAATATTTGAGGGTTTGTGTTGTCCATATGGTATCTGTCCCCCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR-3UTR TCA 90 bp | TGTAACGAAAGTATTGTAGCACAGGGTAAGCAAGCATTTAAACTCAGCTGTCAGAGTTGCATAGTGAAGTaGAAAGAGCTTAGACCAGAG | + |
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Preference number: 2 (lower is better) Translates to: CNESIVAQGKQAFKLSCQSCIVK*KELRPE Trigger: CTCTGGTCTAAGCTCTTTTCACTTCACTATGCAACT...CTGACAGCTGAGTTTAAATGCTTGCTTACCCTGTGCTACAATACTTTCGTTACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR-3UTR TCA 90 bp | CTGGTTGTACTTTGTCCAACATTTGTTTCCCAGGAATATCCCCAAGGTCAACAAAAATACTCCAAGGAATaGCAGAAAGCACCCAAAAAG | + |
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Preference number: 2 (lower is better) Translates to: LVVLCPTFVSQEYPQGQQKYSKE*QKAPKK Trigger: CTTTTTGGGTGCTTTCTGTCATTCCTTGGAGTATTT...TTGTTGACCTTGGGGATATTCCTGGGAAACAAATGTTGGACAAAGTACAACCAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000228679.2 |
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| 3UTR-3UTR CCA 90 bp | TGTAACGAAAGTATTGTAGCACAGGGTAAGCAAGCATTTAAACTCAGCTGTCAGAAGTTCGCTCGTCCTTaGTCTAGACAAATAGTCAGA | + |
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Preference number: 2 (lower is better) Translates to: CNESIVAQGKQAFKLSCQKFARP*SRQIVR Trigger: TCTGACTATTTGTCTAGACCAAGGACGAGCGAACTT...CTGACAGCTGAGTTTAAATGCTTGCTTACCCTGTGCTACAATACTTTCGTTACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR-3UTR TCA 90 bp | AGGTCAACAAAAGACTGTTGTAGATGCTCCTTTTCTCTATTTCTTGTCACTAAAATTCCTGGTAAAATATaGTGCCCTGAGAGTCTGAGT | + |
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Preference number: 2 (lower is better) Translates to: RSTKDCCRCSFSLFLVTKIPGKI*CPESLS Trigger: ACTCAGACTCTCAGGGCATCATATTTTACCAGGAAT...TTTAGTGACAAGAAATAGAGAAAAGGAGCATCTACAACAGTCTTTTGTTGACCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000228679.2 |
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| 3UTR CCA 72 bp | TTTGTCCCCTCCCTGCCCACATTCGATTCCCTTTACTaGAACCCTCGCACCAGGCCTGGCCAGAGATCTTTG | + |
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Preference number: 3 (lower is better) Translates to: FVPSLPTFDSLY*NPRTRPGQRSL Trigger: CAAAGATCTCTGGCCAGGCCTGGTGCGAGGGTTCCAGTAAAGGGAATCGAATGTGGGCAGGGAGGGGACAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR-3UTR CAA 90 bp | CTGGAACCCTCGCACCAGGCCTGGCCAGAGATCTTTGTGGAAAGTCTCTGGTACTTTTGTGTGACATTCTaGTTCCAGCAGCCAGGCTCT | + |
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Preference number: 3 (lower is better) Translates to: LEPSHQAWPEIFVESLWYFCVTF*FQQPGS Trigger: AGAGCCTGGCTGCTGGAACAAGAATGTCACACAAAA...GTACCAGAGACTTTCCACAAAGATCTCTGGCCAGGCCTGGTGCGAGGGTTCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR CCA 72 bp | AACCATTGTGTTAGACATGGCAGGTGGTCACAGTCATaGGGACACAGGCCACCTACGCTCAGGTTTTACCTC | + |
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Preference number: 3 (lower is better) Translates to: NHCVRHGRWSQS*GHRPPTLRFYL Trigger: GAGGTAAAACCTGAGCGTAGGTGGCCTGTGTCCCCATGACTGTGACCACCTGCCATGTCTAACACAATGGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR CCA 72 bp | GGGGACACAGGCCACCTACGCTCAGGTTTTACCTCATaGCCATATTCTATGGCCAGATTCAAGGAGCTGAAA | + |
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Preference number: 3 (lower is better) Translates to: GDTGHLRSGFTS*PYSMARFKELK Trigger: TTTCAGCTCCTTGAATCTGGCCATAGAATATGGCCATGAGGTAAAACCTGAGCGTAGGTGGCCTGTGTCCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR CCA 72 bp | ATTCGATTCCCTTTACTGGAACCCTCGCACCAGGCCTaGCCAGAGATCTTTGTGGAAAGTCTCTGGTACTCA | + |
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Preference number: 3 (lower is better) Translates to: IRFPLLEPSHQA*PEIFVESLWYS Trigger: TGAGTACCAGAGACTTTCCACAAAGATCTCTGGCCAGGCCTGGTGCGAGGGTTCCAGTAAAGGGAATCGAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR CCA 72 bp | TGGCCAAGGGTTCCCAGCTTACAATGCCAGAAGGAATaGGATGGCTTTGGTTGTCAGGCACTAAGTACTACA | + |
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Preference number: 3 (lower is better) Translates to: WPRVPSLQCQKE*DGFGCQALSTT Trigger: TGTAGTACTTAGTGCCTGACAACCAAAGCCATCCCATTCCTTCTGGCATTGTAAGCTGGGAACCCTTGGCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR-3UTR CAA 90 bp | TATCCAGAGTTCAGAAACTATGCGTGGGCTTTGGGATATTCCAGTTTGGTCGGGCCTGGCCAGAGATCTTaGTGGAAAGTCTCTGGTACT | + |
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Preference number: 3 (lower is better) Translates to: YPEFRNYAWALGYSSLVGPGQRS*WKVSGT Trigger: AGTACCAGAGACTTTCCACAAAGATCTCTGGCCAGG...CCCGACCAAACTGGAATATCCCAAAGCCCACGCATAGTTTCTGAACTCTGGATA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR-3UTR CAA 90 bp | ATCTATAACATAGCTGAGCCTCTCAGAGCCAACACACTGCCCCCACCCAGTAAAAACTATGCGTGGGCTTaGGGATATTCCAGTTTGGTC | + |
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Preference number: 3 (lower is better) Translates to: IYNIAEPLRANTLPPPSKNYAWA*GYSSLV Trigger: GACCAAACTGGAATATCCCAAAGCCCACGCATAGTT...TTTACTGGGTGGGGGCAGTGTGTTGGCTCTGAGAGGCTCAGCTATGTTATAGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR TCA 72 bp | CCTTCTATGGCCAGATCTCTAGTGCACATTTTTGTGTaGCATTCTTGTTCCAGCAGCCAGGCTCTCGTTAAG | + |
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Preference number: 3 (lower is better) Translates to: PSMARSLVHIFV*HSCSSSQALVK Trigger: CTTAACGAGAGCCTGGCTGCTGGAACAAGAATGTCACACAAAAATGTGCACTAGAGATCTGGCCATAGAAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR TCA 72 bp | AAGTTCGCTCGTCCTTGGTCTAGACAAATAGTCAGATaGGCCAAATGTTGGCCAAGGGTTCCCAGCTTACAA | + |
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Preference number: 3 (lower is better) Translates to: KFARPWSRQIVR*AKCWPRVPSLQ Trigger: TTGTAAGCTGGGAACCCTTGGCCAACATTTGGCTCATCTGACTATTTGTCTAGACCAAGGACGAGCGAACTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR CCA 72 bp | GTTTTTAAAGCCAACAAGCAGATTCTGCAAGCCACATaGAGAAGCAACCTCTGCCTTCTATGGCCAGATCTC | + |
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Preference number: 3 (lower is better) Translates to: VFKANKQILQAT*RSNLCLLWPDL Trigger: GAGATCTGGCCATAGAAGGCAGAGGTTGCTTCTCCATGTGGCTTGCAGAATCTGCTTGTTGGCTTTAAAAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR CCA 72 bp | TCCCAGCTTACAATGCCAGAAGGAATGGGATGGCTTTaGTTGTCAGGCACTAAGTACTACAGAGAAAGACGA | + |
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Preference number: 3 (lower is better) Translates to: SQLTMPEGMGWL*LSGTKYYRERR Trigger: TCGTCTTTCTCTGTAGTACTTAGTGCCTGACAACCAAAGCCATCCCATTCCTTCTGGCATTGTAAGCTGGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR GCA 72 bp | TGTGAGAGGGTGTTTTTAAAGCCAACAAGCAGATTCTaGAAGCCACATGGAGAAGCAACCTCTGCCTTCTAT | + |
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Preference number: 3 (lower is better) Translates to: CERVFLKPTSRF*KPHGEATSAFY Trigger: ATAGAAGGCAGAGGTTGCTTCTCCATGTGGCTTGCAGAATCTGCTTGTTGGCTTTAAAAACACCCTCTCACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR GCA 72 bp | CCTTCTTATTTGGTTACAATAAATTTGTCCCCTCCCTaGCCACATTCGATTCCCTTTACTGGAACCCTCGCA | + |
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Preference number: 3 (lower is better) Translates to: PSYLVTINLSPP*PHSIPFTGTLA Trigger: TGCGAGGGTTCCAGTAAAGGGAATCGAATGTGGGCAGGGAGGGGACAAATTTATTGTAACCAAATAAGAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR TCA 72 bp | CAGGGTAAGCAAGCATTTAAACTCAGCTGTCAGACCTaGGAGATCTGTGTGTTAGTCAACTGCATGAGAGAT | + |
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Preference number: 3 (lower is better) Translates to: QGKQAFKLSCQT*EICVLVNCMRD Trigger: ATCTCTCATGCAGTTGACTAACACACAGATCTCTCAGGTCTGACAGCTGAGTTTAAATGCTTGCTTACCCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR CCA 72 bp | TGTCAAGATTTACTAGAAACCCATAGTTCAAGGCACTaGATCTATAACATAGCTGAGCCTCTCAGAGCCAAC | + |
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Preference number: 3 (lower is better) Translates to: CQDLLETHSSRH*IYNIAEPLRAN Trigger: GTTGGCTCTGAGAGGCTCAGCTATGTTATAGATCCAGTGCCTTGAACTATGGGTTTCTAGTAAATCTTGACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR TCA 72 bp | AGAGATAGCTCCCAAAATTATTATCAACGTGGTGCATaGGACTGGAGAAATTCTTCCAGCATGCTTAGTGGT | + |
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Preference number: 3 (lower is better) Translates to: RDSSQNYYQRGA*DWRNSSSMLSG Trigger: ACCACTAAGCATGCTGGAAGAATTTCTCCAGTCTCATGCACCACGTTGATAATAATTTTGGGAGCTATCTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR TCA 72 bp | ACATCGAATCTTCCTTTAAAGACTAAGGTTGTAGTGTaGGAGGGTGTTTTTAAAGCCAACAAGCAGATTCTG | + |
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Preference number: 3 (lower is better) Translates to: TSNLPLKTKVVV*EGVFKANKQIL Trigger: CAGAATCTGCTTGTTGGCTTTAAAAACACCCTCTCACACTACAACCTTAGTCTTTAAAGGAAGATTCGATGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| 3UTR CAA 72 bp | TACTGGAACCCTCGCACCAGGCCTGGCCAGAGATCTTaGTGGAAAGTCTCTGGTACTCAGGCCCACAAGCAT | + |
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Preference number: 4 (lower is better) Translates to: YWNPRTRPGQRS*WKVSGTQAHKH Trigger: ATGCTTGTGGGCCTGAGTACCAGAGACTTTCCACAAAGATCTCTGGCCAGGCCTGGTGCGAGGGTTCCAGTA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| CDS-3UTR TCA 90 bp | TGGAACCCTCGCACCAGGCCTGGCCAGAGATCTTTGTGGAAAGTCTCTGGTACTCCGTCACAGAAAGAGTaGTCATGCCTGAGACAGCCT | + |
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Preference number: 4 (lower is better) Translates to: WNPRTRPGQRSLWKVSGTPSQKE*SCLRQP Trigger: AGGCTGTCTCAGGCATGATCACTCTTTCTGTGACGG...AGTACCAGAGACTTTCCACAAAGATCTCTGGCCAGGCCTGGTGCGAGGGTTCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| CDS-3UTR TCA 90 bp | GAGCCTCTCAGAGCCAACACACTGCCCCCACCCAGTAAAACATTGTTAATTATAGTGGTGCGATCAGAGTaGTGGGGGCAACCCCATAGG | + |
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Preference number: 4 (lower is better) Translates to: EPLRANTLPPPSKTLLIIVVRSE*WGQPHR Trigger: CCTATGGGGTTGCCCCCATCACTCTGATCGCACCAC...TATAATTAACAATGTTTTACTGGGTGGGGGCAGTGTGTTGGCTCTGAGAGGCTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| CDS-3UTR TCA 90 bp | TGGAACCCTCGCACCAGGCCTGGCCAGAGATCTTTGTGGAAAGTCTCTGGTACTCTGTACTGTTCTTGCTaGGATAGCCTGGGTGACATT | + |
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Preference number: 4 (lower is better) Translates to: WNPRTRPGQRSLWKVSGTLYCSC*DSLGDI Trigger: AATGTCACCCAGGCTATCTCAGCAAGAACAGTACAG...AGTACCAGAGACTTTCCACAAAGATCTCTGGCCAGGCCTGGTGCGAGGGTTCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| CDS-3UTR GCA 90 bp | GGAAGATTTTTAACAGAATTGGCTGAGACAGTGACTTGCCATACAACAGGGAAATCGACAGCGAGCCGTTaGCCGGGCCTGGTGCCCAGT | + |
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Preference number: 4 (lower is better) Translates to: GRFLTELAETVTCHTTGKSTASR*PGLVPS Trigger: ACTGGGCACCAGGCCCGGGCAACGGCTCGCTGTCGA...TTTCCCTGTTGTATGGCAAGTCACTGTCTCAGCCAATTCTGTTAAAAATCTTCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| CDS-3UTR GCA 90 bp | GTCATGGGGACACAGGCCACCTACGCTCAGGTTTTACCTCATGGCCATATTCTACATAGGCTGCGAAATTaGCTGTCTCTCCTAGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: VMGTQATYAQVLPHGHILHRLRN*LSLLGL Trigger: CAGCCCTAGGAGAGACAGGCAATTTCGCAGCCTATG...TAGAATATGGCCATGAGGTAAAACCTGAGCGTAGGTGGCCTGTGTCCCCATGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| CDS-3UTR GCA 90 bp | CATAGAAGGCGCCCAAGGACAAGCACATCGAATCTTCCTTTAAAGACTAAGGTTCATGCACCCCAGTGGTaGGATCAGAGTGATGGGGGC | + |
|
Preference number: 4 (lower is better) Translates to: HRRRPRTSTSNLPLKTKVHAPQW*DQSDGG Trigger: GCCCCCATCACTCTGATCGCACCACTGGGGTGCATG...AACCTTAGTCTTTAAAGGAAGATTCGATGTGCTTGTCCTTGGGCGCCTTCTATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
||
| CDS-3UTR GCA 90 bp | GTGACATTTGGAGCAAAATTCACCAATAAATATGTTCCTGCAAATGCTAGTGTCTCGACAGCGAGCCGTTaGCCGGGCCTGGTGCCCAGT | + |
|
Preference number: 4 (lower is better) Translates to: VTFGAKFTNKYVPANASVSTASR*PGLVPS Trigger: ACTGGGCACCAGGCCCGGGCAACGGCTCGCTGTCGA...GACACTAGCATTTGCAGGAACATATTTATTGGTGAATTTTGCTCCAAATGTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228073.2 |
||
| CDS-3UTR CCA 90 bp | GGGGACACAGGCCACCTACGCTCAGGTTTTACCTCATGGCCATATTCTATGGCCGTTGTAAAGAAAACATaGTTGACTGGCACCACTGTG | + |
|
Preference number: 4 (lower is better) Translates to: GDTGHLRSGFTSWPYSMAVVKKT*LTGTTV Trigger: CACAGTGGTGCCAGTCAACCATGTTTTCTTTACAAC...GGCCATAGAATATGGCCATGAGGTAAAACCTGAGCGTAGGTGGCCTGTGTCCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
||
| CDS-3UTR CCA 90 bp | ATCTATAACATAGCTGAGCCTCTCAGAGCCAACACACTGCCCCCACCCAGTAAACTTGCTGAGATAGCCTaGGTGACATTTGGAGCAAAA | + |
|
Preference number: 4 (lower is better) Translates to: IYNIAEPLRANTLPPPSKLAEIA*VTFGAK Trigger: TTTTGCTCCAAATGTCACCCAGGCTATCTCAGCAAG...TTTACTGGGTGGGGGCAGTGTGTTGGCTCTGAGAGGCTCAGCTATGTTATAGAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
||
| CDS-3UTR TCA 90 bp | CATAGAAGGCGCCCAAGGACAAGCACATCGAATCTTCCTTTAAAGACTAAGGTTAGAAATCACAGTCAATaGGGCAAGGAGTGCCACCAG | + |
|
Preference number: 4 (lower is better) Translates to: HRRRPRTSTSNLPLKTKVRNHSQ*GKECHQ Trigger: CTGGTGGCACTCCTTGCCTCATTGACTGTGATTTCT...AACCTTAGTCTTTAAAGGAAGATTCGATGTGCTTGTCCTTGGGCGCCTTCTATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
||
| CDS-3UTR TCA 90 bp | TATCCAGAGTTCAGAAACTATGCGTGGGCTTTGGGATATTCCAGTTTGGTCGGGCTTGATTCAGGAACTTaGCTTGGAAAACGCAAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: YPEFRNYAWALGYSSLVGLDSGT*LGKRKR Trigger: CCTCTTGCGTTTTCCAAGTCAAGTTCCTGAATCAAG...CCCGACCAAACTGGAATATCCCAAAGCCCACGCATAGTTTCTGAACTCTGGATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
||
| CDS-3UTR CCA 90 bp | CATAGAAGGCGCCCAAGGACAAGCACATCGAATCTTCCTTTAAAGACTAAGGTTTTCTTCTCTCCACATTaGCCCCTTGTTGAGTCGCCT | + |
|
Preference number: 4 (lower is better) Translates to: HRRRPRTSTSNLPLKTKVFFSPH*PLVESP Trigger: AGGCGACTCAACAAGGGGCCAATGTGGAGAGAAGAA...AACCTTAGTCTTTAAAGGAAGATTCGATGTGCTTGTCCTTGGGCGCCTTCTATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
||
| CDS-3UTR TCA 90 bp | GAGCCTCTCAGAGCCAACACACTGCCCCCACCCAGTAAAACATTGTTAATTATAAAGAGTGATCATGCCTaGGACAGCCTTCACAGAAAT | + |
|
Preference number: 4 (lower is better) Translates to: EPLRANTLPPPSKTLLIIKSDHA*DSLHRN Trigger: ATTTCTGTGAAGGCTGTCTCAGGCATGATCACTCTT...TATAATTAACAATGTTTTACTGGGTGGGGGCAGTGTGTTGGCTCTGAGAGGCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
||
| CDS-3UTR TCA 90 bp | AGGTTCCATAGGATAAGCCATTTGAATCTGGTTGTACTTTGTCCAACATTTGTTCCCCAGGCTGCCTGCTaGAGCTCTGCTATTCCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: RFHRISHLNLVVLCPTFVPQAAC*SSAIPL Trigger: CAAAGGAATAGCAGAGCTTCAGCAGGCAGCCTGGGG...AACAAATGTTGGACAAAGTACAACCAGATTCAAATGGCTTATCCTATGGAACCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228679.2 |
||
| CDS-3UTR CCA 90 bp | TATCCAGAGTTCAGAAACTATGCGTGGGCTTTGGGATATTCCAGTTTGGTCGGGCACACTCTTAAAGTATaGCTTTGGGTGCTCTTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: YPEFRNYAWALGYSSLVGHTLKV*LWVLFL Trigger: CAGAAAGAGCACCCAAAGCCATACTTTAAGAGTGTG...CCCGACCAAACTGGAATATCCCAAAGCCCACGCATAGTTTCTGAACTCTGGATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
||
| 3UTR CAA 72 bp | CAGCTTACAATGCCAGAAGGAATGGGATGGCTTTGGTaGTCAGGCACTAAGTACTACAGAGAAAGACGAACA | + |
|
Preference number: 4 (lower is better) Translates to: QLTMPEGMGWLW*SGTKYYRERRT Trigger: TGTTCGTCTTTCTCTGTAGTACTTAGTGCCTGACAACCAAAGCCATCCCATTCCTTCTGGCATTGTAAGCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
||
| CDS-3UTR TCA 90 bp | CATTTGAATCTGGTTGTACTTTGTCCAACATTTGTTTCCCAGGAATATCCCCAAGCTCTGCTATTCCTTTaGCTGTGCCCTGTGTTCGGA | + |
|
Preference number: 4 (lower is better) Translates to: HLNLVVLCPTFVSQEYPQALLFL*LCPVFG Trigger: TCCGAACACAGGGCACAGTCAAAGGAATAGCAGAGC...TTGGGGATATTCCTGGGAAACAAATGTTGGACAAAGTACAACCAGATTCAAATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228679.2 |
||
| CDS-3UTR GCA 90 bp | AAGCCATTTGAATCTGGTTGTACTTTGTCCAACATTTGTTTCCCAGGAATATCCCCTCTGCTTTTCTCCTaGGATGATGGCGCTGGTTGT | + |
|
Preference number: 4 (lower is better) Translates to: KPFESGCTLSNICFPGISPLLFS*DDGAGC Trigger: ACAACCAGCGCCATCATCGCAGGAGAAAAGCAGAGG...GGATATTCCTGGGAAACAAATGTTGGACAAAGTACAACCAGATTCAAATGGCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000228679.2 |
||
| CDS-3UTR TCA 90 bp | TACAACAGGGAAAAAGGAGTCAGTTCCTTAAGAGAGGTTCATAGAAGGCGCCCAAAAACTCCAAAAAGGTaGATCTGGTTTCTGCGATAC | + |
|
Preference number: 4 (lower is better) Translates to: YNREKGVSSLREVHRRRPKTPKR*IWFLRY Trigger: GTATCGCAGAAACCAGATTCACCTTTTTGGAGTTTT...TGGGCGCCTTCTATGAACCTCTCTTAAGGAACTGACTCCTTTTTCCCTGTTGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
||
| CDS-3UTR CCA 90 bp | ATCTATAACATAGCTGAGCCTCTCAGAGCCAACACACTGCCCCCACCCAGTAAAATTCCTTTCCTTTTATaGAAATACAGAAGGATGCAG | + |
|
Preference number: 4 (lower is better) Translates to: IYNIAEPLRANTLPPPSKIPFLL*KYRRMQ Trigger: CTGCATCCTTCTGTATTTCCATAAAAGGAAAGGAAT...TTTACTGGGTGGGGGCAGTGTGTTGGCTCTGAGAGGCTCAGCTATGTTATAGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
||
| CDS-3UTR GCA 90 bp | CATAGAAGGCGCCCAAGGACAAGCACATCGAATCTTCCTTTAAAGACTAAGGTTAGCAGGACCACAATGTaGTTCATTCCTTTCCTTTTA | + |
|
Preference number: 4 (lower is better) Translates to: HRRRPRTSTSNLPLKTKVSRTTM*FIPFLL Trigger: TAAAAGGAAAGGAATGAAGCACATTGTGGTCCTGCT...AACCTTAGTCTTTAAAGGAAGATTCGATGTGCTTGTCCTTGGGCGCCTTCTATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
||
| CDS-3UTR GCA 90 bp | AGCCATTTGAATCTGGTTGTACTTTGTCCAACATTTGTTTCCCAGGAATATCCCGCTATTTCCTTCCTCTaGTTTTCTCCTGCGATGATG | + |
|
Preference number: 4 (lower is better) Translates to: SHLNLVVLCPTFVSQEYPAISFL*FSPAMM Trigger: CATCATCGCAGGAGAAAAGCAGAGGAAGGAAATAGC...GGGATATTCCTGGGAAACAAATGTTGGACAAAGTACAACCAGATTCAAATGGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228679.2 |
||
| CDS-3UTR GCA 90 bp | AACATTTGTTTCCCAGGAATATCCCCAAGGTCAACAAAAGACTGTTGTAGATGCCTGTCAACTTGGTGTTaGCCTAGCTCCATTTTTCTC | + |
|
Preference number: 4 (lower is better) Translates to: NICFPGISPRSTKDCCRCLSTWC*PSSIFL Trigger: GAGAAAAATGGAGCTAGGGCAACACCAAGTTGACAG...GCATCTACAACAGTCTTTTGTTGACCTTGGGGATATTCCTGGGAAACAAATGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000228679.2 |
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| CDS-3UTR GCA 90 bp | ACTGTTGTAGATGCTCCTTTTCTCTATTTCTTGTCACTAAAAATACTCCAAGGATGCCTGCTGAAGCTCTaGTATTCCTTTGACTGTGCC | + |
|
Preference number: 4 (lower is better) Translates to: TVVDAPFLYFLSLKILQGCLLKL*YSFDCA Trigger: GGCACAGTCAAAGGAATAGCAGAGCTTCAGCAGGCA...TCCTTGGAGTATTTTTAGTGACAAGAAATAGAGAAAAGGAGCATCTACAACAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000228679.2 |
||
| CDS-3UTR TCA 90 bp | TGTAACGAAAGTATTGTAGCACAGGGTAAGCAAGCATTTAAACTCAGCTGTCAGAAATACTCCAAGGAATaGCAGAAAGCACCCAAAAAG | + |
|
Preference number: 4 (lower is better) Translates to: CNESIVAQGKQAFKLSCQKYSKE*QKAPKK Trigger: CTTTTTGGGTGCTTTCTGTCATTCCTTGGAGTATTT...CTGACAGCTGAGTTTAAATGCTTGCTTACCCTGTGCTACAATACTTTCGTTACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
||
| CDS-3UTR CCA 90 bp | TGGGGGACAGATACCATATGGACAACACAAACCCTCAAATATTTACTTCGTAAGCCAGGTTTCCTAAAATaGCCAGCAAAACTCCAAAAA | + |
|
Preference number: 4 (lower is better) Translates to: WGTDTIWTTQTLKYLLRKPGFLK*PAKLQK Trigger: TTTTTGGAGTTTTGCTGGCCATTTTAGGAAACCTGG...CTTACGAAGTAAATATTTGAGGGTTTGTGTTGTCCATATGGTATCTGTCCCCCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
||
| 3UTR CAA 72 bp | ATTAAGGATGAGCCTTCTTATTTGGTTACAATAAATTaGTCCCCTCCCTGCCCACATTCGATTCCCTTTACT | + |
|
Preference number: 4 (lower is better) Translates to: IKDEPSYLVTIN*SPPCPHSIPFT Trigger: AGTAAAGGGAATCGAATGTGGGCAGGGAGGGGACAAATTTATTGTAACCAAATAAGAAGGCTCATCCTTAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
||
| CDS-3UTR CCA 90 bp | AGGTTCCATAGGATAAGCCATTTGAATCTGGTTGTACTTTGTCCAACATTTGTTCTCCATTTTTCTCCATaGAGCTATTTCCTTCCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: RFHRISHLNLVVLCPTFVLHFSP*SYFLPL Trigger: CAGAGGAAGGAAATAGCTCCATGGAGAAAAATGGAG...AACAAATGTTGGACAAAGTACAACCAGATTCAAATGGCTTATCCTATGGAACCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000228679.2 |
||
| CDS-3UTR CCA 90 bp | AGGTCAACAAAAGACTGTTGTAGATGCTCCTTTTCTCTATTTCTTGTCACTAAAGGCCAGATGCACAAATaGGCACTAGAAAAATCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: RSTKDCCRCSFSLFLVTKGQMHK*ALEKSL Trigger: CAGAGATTTTTCTAGTGCCCATTTGTGCATCTGGCC...TTTAGTGACAAGAAATAGAGAAAAGGAGCATCTACAACAGTCTTTTGTTGACCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000228679.2 |
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| CDS-3UTR TCA 90 bp | TTCACCAATAAATATGTTCCTGCAAATGCTAGTGTCATACCTAGTAAATCCGAGAAAACTCCAAAAAGGTaGATCTGGTTTCTGCGATAC | + |
|
Preference number: 4 (lower is better) Translates to: FTNKYVPANASVIPSKSEKTPKR*IWFLRY Trigger: GTATCGCAGAAACCAGATTCACCTTTTTGGAGTTTT...CTCGGATTTACTAGGTATGACACTAGCATTTGCAGGAACATATTTATTGGTGAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000228073.2 |
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| CDS-3UTR CCA 90 bp | GTGACATTTGGAGCAAAATTCACCAATAAATATGTTCCTGCAAATGCTAGTGTCCCAGGTTTCCTAAAATaGCCAGCAAAACTCCAAAAA | + |
|
Preference number: 4 (lower is better) Translates to: VTFGAKFTNKYVPANASVPGFLK*PAKLQK Trigger: TTTTTGGAGTTTTGCTGGCCATTTTAGGAAACCTGG...GACACTAGCATTTGCAGGAACATATTTATTGGTGAATTTTGCTCCAAATGTCAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000228073.2 |
||
| CDS TCA 90 bp | AGGCGCTCGACAGCGAGCCGTTGCCCGGGCCTGGTGCCCAGTATGTaGAGTTCCGAGACAGCTCGTCTAGGACGGCCGAGGCGTCGTCCT | + |
|
Preference number: 5 (lower is better) Translates to: RRSTASRCPGLVPSM*SSETARLGRPRRRP Trigger: AGGACGACGCCTCGGCCGTCCTAGACGAGCTGTCTCGGAACTTCACATACTGGGCACCAGGCCCGGGCAACGGCTCGCTGTCGAGCGCCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040791.9 ENSMUST00000228073.2 |
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| CDS-3UTR CAA 90 bp | TTAAGAGAGGTTCATAGAAGGCGCCCAAGGACAAGCACATCGAATCTTCCTTTACTCGACAGCGAGCCGTaGCCCGGGCCTGGTGCCCAG | + |
|
Preference number: 5 (lower is better) Translates to: LREVHRRRPRTSTSNLPLLDSEP*PGPGAQ Trigger: CTGGGCACCAGGCCCGGGCAACGGCTCGCTGTCGAG...TAAAGGAAGATTCGATGTGCTTGTCCTTGGGCGCCTTCTATGAACCTCTCTTAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| CDS-3UTR CAA 90 bp | GCCTGGGTGACATTTGGAGCAAAATTCACCAATAAATATGTTCCTGCAAATGCTCTCGACAGCGAGCCGTaGCCCGGGCCTGGTGCCCAG | + |
|
Preference number: 5 (lower is better) Translates to: AWVTFGAKFTNKYVPANALDSEP*PGPGAQ Trigger: CTGGGCACCAGGCCCGGGCAACGGCTCGCTGTCGAG...AGCATTTGCAGGAACATATTTATTGGTGAATTTTGCTCCAAATGTCACCCAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228073.2 |
||
| CDS-3UTR CAA 90 bp | CTGGAACCCTCGCACCAGGCCTGGCCAGAGATCTTTGTGGAAAGTCTCTGGTACTACTTTGTCCAACATTaGTTTCCCAGGAATATCCCC | + |
|
Preference number: 5 (lower is better) Translates to: LEPSHQAWPEIFVESLWYYFVQH*FPRNIP Trigger: GGGGATATTCCTGGGAAACAAATGTTGGACAAAGTA...GTACCAGAGACTTTCCACAAAGATCTCTGGCCAGGCCTGGTGCGAGGGTTCCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| CDS-3UTR CAA 90 bp | TACAACAGGGAAAAAGGAGTCAGTTCCTTAAGAGAGGTTCATAGAAGGCGCCCACACATTGGCCCCTTGTaGAGTCGCCTCCATCAGGCA | + |
|
Preference number: 5 (lower is better) Translates to: YNREKGVSSLREVHRRRPHIGPL*SRLHQA Trigger: TGCCTGATGGAGGCGACTCAACAAGGGGCCAATGTG...TGGGCGCCTTCTATGAACCTCTCTTAAGGAACTGACTCCTTTTTCCCTGTTGTA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
||
| CDS CCA 90 bp | GATGCCTGCGATGATGGCGCTGGTTGTAAAGAAAACATGGTTGACTaGCACCACTGTGGTCATTGTGTAGAGTTCTGTGGCTTGATTCAG | + |
|
Preference number: 5 (lower is better) Translates to: DACDDGAGCKENMVD*HHCGHCVEFCGLIQ Trigger: CTGAATCAAGCCACAGAACTCTACACAATGACCACAGTGGTGCCAGTCAACCATGTTTTCTTTACAACCAGCGCCATCATCGCAGGCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
||
| CDS-3UTR CAA 90 bp | ATCTATAACATAGCTGAGCCTCTCAGAGCCAACACACTGCCCCCACCCAGTAAAGTAAAGAAAACATGGTaGACTGGCACCACTGTGGTC | + |
|
Preference number: 5 (lower is better) Translates to: IYNIAEPLRANTLPPPSKVKKTW*TGTTVV Trigger: GACCACAGTGGTGCCAGTCAACCATGTTTTCTTTAC...TTTACTGGGTGGGGGCAGTGTGTTGGCTCTGAGAGGCTCAGCTATGTTATAGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
||
| CDS GCA 90 bp | CAGATGCACAAATGGGCACTAGAAAAATCTCTGTCAACTTGGTGTTaGCCTAGCTCCATTTTTCTCCATGGAGCTATTTCCTTCCTCTGC | + |
|
Preference number: 5 (lower is better) Translates to: QMHKWALEKSLSTWC*PSSIFLHGAISFLC Trigger: GCAGAGGAAGGAAATAGCTCCATGGAGAAAAATGGAGCTAGGGCAACACCAAGTTGACAGAGATTTTTCTAGTGCCCATTTGTGCATCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000228679.2 |
||
| CDS CCA 90 bp | CAGCAGGACTCCACTCAGCCAAAGCACACTCTTAAAGTATGGCTTTaGGTGCTCTTTCTGGGCCAAATGAAGATGAGAATATTTCTGGAT | + |
|
Preference number: 5 (lower is better) Translates to: QQDSTQPKHTLKVWL*VLFLGQMKMRIFLD Trigger: ATCCAGAAATATTCTCATCTTCATTTGGCCCAGAAAGAGCACCCAAAGCCATACTTTAAGAGTGTGCTTTGGCTGAGTGGAGTCCTGCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
||
| CDS TCA 90 bp | AGAAGATGGCATAAGTTAGCTGCATTTTACCCGTCACAGAAAGAGTaGTCATGCCTGAGACAGCCTTCACAGAAATCACAGTCAATGAGG | + |
|
Preference number: 5 (lower is better) Translates to: RRWHKLAAFYPSQKE*SCLRQPSQKSQSMR Trigger: CCTCATTGACTGTGATTTCTGTGAAGGCTGTCTCAGGCATGATCACTCTTTCTGTGACGGGTAAAATGCAGCTAACTTATGCCATCTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
||
| CDS-3UTR CAA 90 bp | TTAAGAGAGGTTCATAGAAGGCGCCCAAGGACAAGCACATCGAATCTTCCTTTAGTAGAGTTCTGTGGCTaGATTCAGGAACTTGACTTG | + |
|
Preference number: 5 (lower is better) Translates to: LREVHRRRPRTSTSNLPLVEFCG*IQELDL Trigger: CAAGTCAAGTTCCTGAATCAAGCCACAGAACTCTAC...TAAAGGAAGATTCGATGTGCTTGTCCTTGGGCGCCTTCTATGAACCTCTCTTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
||
| CDS-3UTR CAA 90 bp | CATAGAAGGCGCCCAAGGACAAGCACATCGAATCTTCCTTTAAAGACTAAGGTTCACATAGACCAGGAATaGCCAGCCAACAAAGTAATA | + |
|
Preference number: 5 (lower is better) Translates to: HRRRPRTSTSNLPLKTKVHIDQE*PANKVI Trigger: TATTACTTTGTTGGCTGGCAATTCCTGGTCTATGTG...AACCTTAGTCTTTAAAGGAAGATTCGATGTGCTTGTCCTTGGGCGCCTTCTATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
||
| CDS-3UTR CAA 90 bp | TACAACAGGGAAAAAGGAGTCAGTTCCTTAAGAGAGGTTCATAGAAGGCGCCCACATAGGATAAGCCATTaGAATCTGGTTGTACTTTGT | + |
|
Preference number: 5 (lower is better) Translates to: YNREKGVSSLREVHRRRPHRISH*NLVVLC Trigger: ACAAAGTACAACCAGATTCAAATGGCTTATCCTATG...TGGGCGCCTTCTATGAACCTCTCTTAAGGAACTGACTCCTTTTTCCCTGTTGTA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
||
| CDS TCA 72 bp | ACAGCGAGCCGTTGCCCGGGCCTGGTGCCCAGTATGTaGAGTTCCGAGACAGCTCGTCTAGGACGGCCGAGG | + |
|
Preference number: 6 (lower is better) Translates to: TASRCPGLVPSM*SSETARLGRPR Trigger: CCTCGGCCGTCCTAGACGAGCTGTCTCGGAACTTCACATACTGGGCACCAGGCCCGGGCAACGGCTCGCTGT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040791.9 ENSMUST00000228073.2 |
||
| CDS CCA 72 bp | ATACCAGGCGCTCGACAGCGAGCCGTTGCCCGGGCCTaGTGCCCAGTATGTGAAGTTCCGAGACAGCTCGTC | + |
|
Preference number: 6 (lower is better) Translates to: IPGARQRAVARA*CPVCEVPRQLV Trigger: GACGAGCTGTCTCGGAACTTCACATACTGGGCACCAGGCCCGGGCAACGGCTCGCTGTCGAGCGCCTGGTAT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040791.9 ENSMUST00000228073.2 |
||
| CDS CAA 72 bp | TGGTTTCTGCGATACCAGGCGCTCGACAGCGAGCCGTaGCCCGGGCCTGGTGCCCAGTATGTGAAGTTCCGA | + |
|
Preference number: 6 (lower is better) Translates to: WFLRYQALDSEP*PGPGAQYVKFR Trigger: TCGGAACTTCACATACTGGGCACCAGGCCCGGGCAACGGCTCGCTGTCGAGCGCCTGGTATCGCAGAAACCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040791.9 ENSMUST00000228073.2 |
||
| CDS TCA 72 bp | TACCCCAGGCTGCCTGCTGAAGCTCTGCTATTCCTTTaGCTGTGCCCTGTGTTCGGAGAGTCTGGCCAGATG | + |
|
Preference number: 6 (lower is better) Translates to: YPRLPAEALLFL*LCPVFGESGQM Trigger: CATCTGGCCAGACTCTCCGAACACAGGGCACAGTCAAAGGAATAGCAGAGCTTCAGCAGGCAGCCTGGGGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228679.2 |
||
| CDS CCA 72 bp | GATGATGGCGCTGGTTGTAAAGAAAACATGGTTGACTaGCACCACTGTGGTCATTGTGTAGAGTTCTGTGGC | + |
|
Preference number: 6 (lower is better) Translates to: DDGAGCKENMVD*HHCGHCVEFCG Trigger: GCCACAGAACTCTACACAATGACCACAGTGGTGCCAGTCAACCATGTTTTCTTTACAACCAGCGCCATCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
||
| CDS GCA 72 bp | AGCTCCATTTTTCTCCATGGAGCTATTTCCTTCCTCTaGTTTTCTCCTGCGATGATGGCGCTGGTTGTAAAG | + |
|
Preference number: 6 (lower is better) Translates to: SSIFLHGAISFL*FSPAMMALVVK Trigger: CTTTACAACCAGCGCCATCATCGCAGGAGAAAAGCAGAGGAAGGAAATAGCTCCATGGAGAAAAATGGAGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000228679.2 |
||
| CDS TCA 72 bp | CATAAGTTAGCTGCATTTTACCCGTCACAGAAAGAGTaGTCATGCCTGAGACAGCCTTCACAGAAATCACAG | + |
|
Preference number: 6 (lower is better) Translates to: HKLAAFYPSQKE*SCLRQPSQKSQ Trigger: CTGTGATTTCTGTGAAGGCTGTCTCAGGCATGATCACTCTTTCTGTGACGGGTAAAATGCAGCTAACTTATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
||
| CDS CCA 72 bp | ATGCACAAATGGGCACTAGAAAAATCTCTGTCAACTTaGTGTTGCCCTAGCTCCATTTTTCTCCATGGAGCT | + |
|
Preference number: 6 (lower is better) Translates to: MHKWALEKSLST*CCPSSIFLHGA Trigger: AGCTCCATGGAGAAAAATGGAGCTAGGGCAACACCAAGTTGACAGAGATTTTTCTAGTGCCCATTTGTGCAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000228679.2 |
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| CDS CAA 72 bp | CGCCTCCATCAGGCAAGGTTCCATAGGATAAGCCATTaGAATCTGGTTGTACTTTGTCCAACATTTGTTTCC | + |
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Preference number: 6 (lower is better) Translates to: RLHQARFHRISH*NLVVLCPTFVS Trigger: GGAAACAAATGTTGGACAAAGTACAACCAGATTCAAATGGCTTATCCTATGGAACCTTGCCTGATGGAGGCG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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| CDS GCA 72 bp | AAATGGGCACTAGAAAAATCTCTGTCAACTTGGTGTTaGCCTAGCTCCATTTTTCTCCATGGAGCTATTTCC | + |
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Preference number: 6 (lower is better) Translates to: KWALEKSLSTWC*PSSIFLHGAIS Trigger: GGAAATAGCTCCATGGAGAAAAATGGAGCTAGGGCAACACCAAGTTGACAGAGATTTTTCTAGTGCCCATTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000228679.2 |
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| CDS CAA 90 bp | TTGTTGAGTCGCCTCCATCAGGCAAGGTTCCATAGGATAAGCCATTaGAATCTGGTTGTACTTTGTCCAACATTTGTTTCCCAGGAATAT | + |
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Preference number: 6 (lower is better) Translates to: LLSRLHQARFHRISH*NLVVLCPTFVSQEY Trigger: ATATTCCTGGGAAACAAATGTTGGACAAAGTACAACCAGATTCAAATGGCTTATCCTATGGAACCTTGCCTGATGGAGGCGACTCAACAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040791.9 |
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