Pregenerated sensors for NIPAL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067219Ensembl transcript IDs: ENSMUST00000087212.8
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATGCACACGAGTAAGAGACGAGCAGTTCGAAACGTCCCAGAGGGATaGAGTAGTTTACTCTTCCTCCAGCAGCATCTTCCCACTCGAGAA | + |
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Preference number: 1 (lower is better) Translates to: MHTSKRRAVRNVPEG*SSLLFLQQHLPTRE Trigger: TTCTCGAGTGGGAAGATGCTGCTGGAGGAAGAGTAAACTACTGCATCCCTCTGGGACGTTTCGAACTGCTCGTCTCTTACTCGTGTGCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR TCA 90 bp | GTTACCCAAAGTGGGTCAGGGCAGGAAGTAAACATGTATATGCCTTaGGGTATTAAGTCATGGGATGCCCATGGATTATCCTCCCTCCCA | + |
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Preference number: 1 (lower is better) Translates to: VTQSGSGQEVNMYMP*GIKSWDAHGLSSLP Trigger: TGGGAGGGAGGATAATCCATGGGCATCCCATGACTTAATACCTCAAGGCATATACATGTTTACTTCCTGCCCTGACCCACTTTGGGTAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR CCA 90 bp | ACAAGAAGAAATCTATGGTGGAACAGTAGTTTTTCAAAAAGAAGCTaGCGTGATGGTACACACCTTGAACCCAAACACTCAGGAGATGGA | + |
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Preference number: 1 (lower is better) Translates to: TRRNLWWNSSFSKRS*RDGTHLEPKHSGDG Trigger: TCCATCTCCTGAGTGTTTGGGTTCAAGGTGTGTACCATCACGCCAGCTTCTTTTTGAAAAACTACTGTTCCACCATAGATTTCTTCTTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR TCA 90 bp | CTTGGATTGTCTAAAATTAATAATGTGACTGAAACTGAGGAACGATaGAGAAACTTGTGCTCAGTGGTTCTCTCTCTCTCTCTCTCTCCC | + |
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Preference number: 1 (lower is better) Translates to: LGLSKINNVTETEER*RNLCSVVLSLSLSP Trigger: GGGAGAGAGAGAGAGAGAGAGAACCACTGAGCACAAGTTTCTTCATCGTTCCTCAGTTTCAGTCACATTATTAATTTTAGACAATCCAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR TCA 90 bp | GAAGTTATAATTCAAAAGGCAAAGCCATTTTCTTTACATATTCGCTaGTATCCACCAAATAACTCACGTCTATACGATGACAAGGATACG | + |
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Preference number: 1 (lower is better) Translates to: EVIIQKAKPFSLHIR*YPPNNSRLYDDKDT Trigger: CGTATCCTTGTCATCGTATAGACGTGAGTTATTTGGTGGATATCAGCGAATATGTAAAGAAAATGGCTTTGCCTTTTGAATTATAACTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR-3UTR TCA 90 bp | GTAAGAGACGAGCAGTTCGAAACGTCCCAGAGGGATGCAGTAGTTTACTCTTCCAAGACCAGGCGGGGATaGAGCGCCACCTGGCAGTGC | + |
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Preference number: 2 (lower is better) Translates to: VRDEQFETSQRDAVVYSSKTRRG*SATWQC Trigger: GCACTGCCAGGTGGCGCTTCATCCCCGCCTGGTCTT...GGAAGAGTAAACTACTGCATCCCTCTGGGACGTTTCGAACTGCTCGTCTCTTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR-3UTR CCA 90 bp | GAAGATACCCCGGGGGAACCAGGTGAGATTATCAAAGCAACAAGGAAAGCCAGTGGTTGTTCTCAGTTTTaGATGACCCACCTTTTAGGG | + |
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Preference number: 2 (lower is better) Translates to: EDTPGEPGEIIKATRKASGCSQF*MTHLLG Trigger: CCCTAAAAGGTGGGTCATCCAAAACTGAGAACAACC...ACTGGCTTTCCTTGTTGCTTTGATAATCTCACCTGGTTCCCCCGGGGTATCTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR-3UTR GCA 90 bp | TGGTTCTACTGGTTTTATTATTCGGCCCCTTGTGTTGAGGATCAAACCCAGTGCAACGTCCCAGAGGGATaGAGTAGTTTACTCTTCCTC | + |
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Preference number: 2 (lower is better) Translates to: WFYWFYYSAPCVEDQTQCNVPEG*SSLLFL Trigger: GAGGAAGAGTAAACTACTGCATCCCTCTGGGACGTT...GCACTGGGTTTGATCCTCAACACAAGGGGCCGAATAATAAAACCAGTAGAACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR-3UTR GCA 90 bp | GTAAGAGACGAGCAGTTCGAAACGTCCCAGAGGGATGCAGTAGTTTACTCTTCCTTAGAAAGAAGGCATTaGAGACCAGAGGTCAATACA | + |
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Preference number: 2 (lower is better) Translates to: VRDEQFETSQRDAVVYSSLERRH*RPEVNT Trigger: TGTATTGACCTCTGGTCTGCAATGCCTTCTTTCTAA...GGAAGAGTAAACTACTGCATCCCTCTGGGACGTTTCGAACTGCTCGTCTCTTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR-3UTR GCA 90 bp | GAAGATACCCCGGGGGAACCAGGTGAGATTATCAAAGCAACAAGGAAAGCCAGTCCAGAAAACATGTTTTaGTTACATTATCCAGGTCCA | + |
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Preference number: 2 (lower is better) Translates to: EDTPGEPGEIIKATRKASPENMF*LHYPGP Trigger: TGGACCTGGATAATGTAAGCAAAACATGTTTTCTGG...ACTGGCTTTCCTTGTTGCTTTGATAATCTCACCTGGTTCCCCCGGGGTATCTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR-3UTR TCA 90 bp | CAAGGAAAGCCAGTAAAAGAATTTGTACAGGTTTCAAACATCCTACCATTTCAGGTCTTTGGCTTCTGTTaGGCTCAGGGACTGTTTCGG | + |
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Preference number: 2 (lower is better) Translates to: QGKPVKEFVQVSNILPFQVFGFC*AQGLFR Trigger: CCGAAACAGTCCCTGAGCTCAACAGAAGCCAAAGAC...CTGAAATGGTAGGATGTTTGAAACCTGTACAAATTCTTTTACTGGCTTTCCTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR-3UTR TCA 90 bp | TGGTTCTACTGGTTTTATTATTCGGCCCCTTGTGTTGAGGATCAAACCCAGTGCAGGCTGTGTCCATTCTaGAAAGTTAGAAACTGTTTA | + |
|
Preference number: 2 (lower is better) Translates to: WFYWFYYSAPCVEDQTQCRLCPF*KVRNCL Trigger: TAAACAGTTTCTAACTTTTCAGAATGGACACAGCCT...GCACTGGGTTTGATCCTCAACACAAGGGGCCGAATAATAAAACCAGTAGAACCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR-3UTR GCA 90 bp | TGGTTCTACTGGTTTTATTATTCGGCCCCTTGTGTTGAGGATCAAACCCAGTGCCCAACTTTAGTGAAGTaGCTATTATTTACTGGGCAT | + |
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Preference number: 2 (lower is better) Translates to: WFYWFYYSAPCVEDQTQCPTLVK*LLFTGH Trigger: ATGCCCAGTAAATAATAGGCACTTCACTAAAGTTGG...GCACTGGGTTTGATCCTCAACACAAGGGGCCGAATAATAAAACCAGTAGAACCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR-3UTR CCA 90 bp | CAAGGAAAGCCAGTAAAAGAATTTGTACAGGTTTCAAACATCCTACCATTTCAGCTTGATTTTCCAATTTaGAGGCTTTGCAGAGCAAAG | + |
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Preference number: 2 (lower is better) Translates to: QGKPVKEFVQVSNILPFQLDFPI*RLCRAK Trigger: CTTTGCTCTGCAAAGCCTCCAAATTGGAAAATCAAG...CTGAAATGGTAGGATGTTTGAAACCTGTACAAATTCTTTTACTGGCTTTCCTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR CAA 90 bp | GTTGGAATGGTTCTGCATTGTGATGGAGAGTGGACAATGATGAATTaGCCTTCACTTGGATTGTCTAAAATTAATAATGTGACTGAAACT | + |
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Preference number: 2 (lower is better) Translates to: VGMVLHCDGEWTMMN*PSLGLSKINNVTET Trigger: AGTTTCAGTCACATTATTAATTTTAGACAATCCAAGTGAAGGCAAATTCATCATTGTCCACTCTCCATCACAATGCAGAACCATTCCAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR-3UTR TCA 90 bp | GTGAGATTATCAAAGCAACAAGGAAAGCCAGTAAAAGAATTTGTACAGGTTTCAAGCATGAGTCTAGAATaGGTCAGAGAAATCAAATGC | + |
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Preference number: 2 (lower is better) Translates to: VRLSKQQGKPVKEFVQVSSMSLE*VREIKC Trigger: GCATTTGATTTCTCTGACTCATTCTAGACTCATGCT...TGAAACCTGTACAAATTCTTTTACTGGCTTTCCTTGTTGCTTTGATAATCTCAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR-3UTR CCA 90 bp | GTGAGATTATCAAAGCAACAAGGAAAGCCAGTAAAAGAATTTGTACAGGTTTCAGTAAAAGGAATCTGTTaGTTGTTCTCAGTTTTGGAT | + |
|
Preference number: 2 (lower is better) Translates to: VRLSKQQGKPVKEFVQVSVKGIC*LFSVLD Trigger: ATCCAAAACTGAGAACAACCAACAGATTCCTTTTAC...TGAAACCTGTACAAATTCTTTTACTGGCTTTCCTTGTTGCTTTGATAATCTCAC 34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR-3UTR CAA 90 bp | GTAAGAGACGAGCAGTTCGAAACGTCCCAGAGGGATGCAGTAGTTTACTCTTCCGTGTTCCAGGAGTCTTaGACCTGTGCACAACGTACC | + |
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Preference number: 3 (lower is better) Translates to: VRDEQFETSQRDAVVYSSVFQES*TCAQRT Trigger: GGTACGTTGTGCACAGGTCAAAGACTCCTGGAACAC...GGAAGAGTAAACTACTGCATCCCTCTGGGACGTTTCGAACTGCTCGTCTCTTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR GCA 72 bp | AGTAAGAGACGAGCAGTTCGAAACGTCCCAGAGGGATaGAGTAGTTTACTCTTCCTCCAGCAGCATCTTCCC | + |
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Preference number: 3 (lower is better) Translates to: SKRRAVRNVPEG*SSLLFLQQHLP Trigger: GGGAAGATGCTGCTGGAGGAAGAGTAAACTACTGCATCCCTCTGGGACGTTTCGAACTGCTCGTCTCTTACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR TCA 72 bp | GAACGGCCACAACCTGAGGAAAGATGTCTAGAGAAATaGCTGATATCCTTACCAAGAAGATACCCCGGGGGA | + |
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Preference number: 3 (lower is better) Translates to: ERPQPEERCLEK*LISLPRRYPGG Trigger: TCCCCCGGGGTATCTTCTTGGTAAGGATATCAGTCATTTCTCTAGACATCTTTCCTCAGGTTGTGGCCGTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR TCA 72 bp | TTGGTTCTACTGGTTTTATTATTCGGCCCCTTGTGTTaGGGATCAAACCCAGTGCCTGTGTGCATGCAGAGG | + |
|
Preference number: 3 (lower is better) Translates to: LVLLVLLFGPLC*GSNPVPVCMQR Trigger: CCTCTGCATGCACACAGGCACTGGGTTTGATCCTCAACACAAGGGGCCGAATAATAAAACCAGTAGAACCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR-3UTR CAA 90 bp | CCAGAGGGATGCAGTAGTTTACTCTTCCTCCAGCAGCATCTTCCCACTCGAGAATCCAGAAAACATGTTTaGCTTACATTATCCAGGTCC | + |
|
Preference number: 3 (lower is better) Translates to: PEGCSSLLFLQQHLPTRESRKHV*LTLSRS Trigger: GGACCTGGATAATGTAAGCAAAACATGTTTTCTGGA...TTCTCGAGTGGGAAGATGCTGCTGGAGGAAGAGTAAACTACTGCATCCCTCTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR-3UTR CAA 90 bp | CAAGGAAAGCCAGTAAAAGAATTTGTACAGGTTTCAAACATCCTACCATTTCAGCAAGGGGTGCTGAACTaGAGGCCAGCCTGGGTCACA | + |
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Preference number: 3 (lower is better) Translates to: QGKPVKEFVQVSNILPFQQGVLN*RPAWVT Trigger: TGTGACCCAGGCTGGCCTCAAGTTCAGCACCCCTTG...CTGAAATGGTAGGATGTTTGAAACCTGTACAAATTCTTTTACTGGCTTTCCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR TCA 72 bp | GTGCTCCCATCTCTTAGATTTAATAGCTTGAGATTATaGCCCATCAGACGATGGCGTCTGAGACTCTGCTCG | + |
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Preference number: 3 (lower is better) Translates to: VLPSLRFNSLRL*PIRRWRLRLCS Trigger: CGAGCAGAGTCTCAGACGCCATCGTCTGATGGGTCATAATCTCAAGCTATTAAATCTAAGAGATGGGAGCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR-3UTR CAA 90 bp | TGGTTCTACTGGTTTTATTATTCGGCCCCTTGTGTTGAGGATCAAACCCAGTGCTGGTTGTTCTCAGTTTaGGATGACCCACCTTTTAGG | + |
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Preference number: 3 (lower is better) Translates to: WFYWFYYSAPCVEDQTQCWLFSV*DDPPFR Trigger: CCTAAAAGGTGGGTCATCCAAAACTGAGAACAACCA...GCACTGGGTTTGATCCTCAACACAAGGGGCCGAATAATAAAACCAGTAGAACCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR TCA 72 bp | AGTGGGTCAGGGCAGGAAGTAAACATGTATATGCCTTaGGGTATTAAGTCATGGGATGCCCATGGATTATCC | + |
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Preference number: 3 (lower is better) Translates to: SGSGQEVNMYMP*GIKSWDAHGLS Trigger: GGATAATCCATGGGCATCCCATGACTTAATACCTCAAGGCATATACATGTTTACTTCCTGCCCTGACCCACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR-3UTR CAA 90 bp | TCAACAAGAAGAAATCTATGGTGGAACAGTAGTTTTTCAAAAAGAAGCTGGCGTTGTCTTTGGCTTCTGTaGAGCTCAGGGACTGTTTCG | + |
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Preference number: 3 (lower is better) Translates to: STRRNLWWNSSFSKRSWRCLWLL*SSGTVS Trigger: CGAAACAGTCCCTGAGCTCAACAGAAGCCAAAGACA...ACGCCAGCTTCTTTTTGAAAAACTACTGTTCCACCATAGATTTCTTCTTGTTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR-3UTR CAA 90 bp | TGGTGGAACAGTAGTTTTTCAAAAAGAAGCTGGCGTGATGGTACACACCTTGAATTTAGAAAGAAGGCATaGCAGACCAGAGGTCAATAC | + |
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Preference number: 3 (lower is better) Translates to: WWNSSFSKRSWRDGTHLEFRKKA*QTRGQY Trigger: GTATTGACCTCTGGTCTGCAATGCCTTCTTTCTAAA...TTCAAGGTGTGTACCATCACGCCAGCTTCTTTTTGAAAAACTACTGTTCCACCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR-3UTR CAA 90 bp | TGGTTCTACTGGTTTTATTATTCGGCCCCTTGTGTTGAGGATCAAACCCAGTGCTGTAAAAGGAATCTGTaGGTTGTTCTCAGTTTTGGA | + |
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Preference number: 3 (lower is better) Translates to: WFYWFYYSAPCVEDQTQCCKRNL*VVLSFG Trigger: TCCAAAACTGAGAACAACCAACAGATTCCTTTTACA...GCACTGGGTTTGATCCTCAACACAAGGGGCCGAATAATAAAACCAGTAGAACCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR CCA 72 bp | AATCTATGGTGGAACAGTAGTTTTTCAAAAAGAAGCTaGCGTGATGGTACACACCTTGAACCCAAACACTCA | + |
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Preference number: 3 (lower is better) Translates to: NLWWNSSFSKRS*RDGTHLEPKHS Trigger: TGAGTGTTTGGGTTCAAGGTGTGTACCATCACGCCAGCTTCTTTTTGAAAAACTACTGTTCCACCATAGATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR CCA 72 bp | AAACGTGTTCACAGTTTCTATATCTGTTACCCAAAGTaGGTCAGGGCAGGAAGTAAACATGTATATGCCTTG | + |
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Preference number: 3 (lower is better) Translates to: KRVHSFYICYPK*VRAGSKHVYAL Trigger: CAAGGCATATACATGTTTACTTCCTGCCCTGACCCACTTTGGGTAACAGATATAGAAACTGTGAACACGTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR CCA 72 bp | ATTTTTGTTGGAATGGTTCTGCATTGTGATGGAGAGTaGACAATGATGAATTTGCCTTCACTTGGATTGTCT | + |
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Preference number: 3 (lower is better) Translates to: IFVGMVLHCDGE*TMMNLPSLGLS Trigger: AGACAATCCAAGTGAAGGCAAATTCATCATTGTCCACTCTCCATCACAATGCAGAACCATTCCAACAAAAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR-3UTR CAA 90 bp | CAAGGAAAGCCAGTAAAAGAATTTGTACAGGTTTCAAACATCCTACCATTTCAGTTAGGGATAAGACCTTaGAGAAAAGTGGAACATCAC | + |
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Preference number: 3 (lower is better) Translates to: QGKPVKEFVQVSNILPFQLGIRP*RKVEHH Trigger: GTGATGTTCCACTTTTCTCAAAGGTCTTATCCCTAA...CTGAAATGGTAGGATGTTTGAAACCTGTACAAATTCTTTTACTGGCTTTCCTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR-3UTR CAA 90 bp | CAAGGAAAGCCAGTAAAAGAATTTGTACAGGTTTCAAACATCCTACCATTTCAGAAAGGAATCTGTTGGTaGTTCTCAGTTTTGGATGAC | + |
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Preference number: 3 (lower is better) Translates to: QGKPVKEFVQVSNILPFQKGICW*FSVLDD Trigger: GTCATCCAAAACTGAGAACAACCAACAGATTCCTTT...CTGAAATGGTAGGATGTTTGAAACCTGTACAAATTCTTTTACTGGCTTTCCTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS-3UTR TCA 90 bp | TGGTTCTACTGGTTTTATTATTCGGCCCCTTGTGTTGAGGATCAAACCCAGTGCCTCTCCGGCTCCCATTaGCAGCAGTCCTGCCCACCA | + |
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Preference number: 4 (lower is better) Translates to: WFYWFYYSAPCVEDQTQCLSGSH*QQSCPP Trigger: TGGTGGGCAGGACTGCTGTCAATGGGAGCCGGAGAG...GCACTGGGTTTGATCCTCAACACAAGGGGCCGAATAATAAAACCAGTAGAACCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS-3UTR TCA 90 bp | CACCTTGAACCCAAACACTCAGGAGATGGAAGCCAAGGGGTGCTGAACTTGAGGTCACCAGGGATGTGTTaGAAGTGTCCAGGGCCTTGT | + |
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Preference number: 4 (lower is better) Translates to: HLEPKHSGDGSQGVLNLRSPGMC*KCPGPC Trigger: ACAAGGCCCTGGACACTTTCAACACATCCCTGGTGA...CCTCAAGTTCAGCACCCCTTGGCTTCCATCTCCTGAGTGTTTGGGTTCAAGGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS-3UTR TCA 90 bp | GAAGATACCCCGGGGGAACCAGGTGAGATTATCAAAGCAACAAGGAAAGCCAGTCGCTCAGGGTACCGATaGTATCTCCAGCTTTCATGC | + |
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Preference number: 4 (lower is better) Translates to: EDTPGEPGEIIKATRKASRSGYR*YLQLSC Trigger: GCATGAAAGCTGGAGATATCATCGGTACCCTGAGCG...ACTGGCTTTCCTTGTTGCTTTGATAATCTCACCTGGTTCCCCCGGGGTATCTTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS-3UTR TCA 90 bp | TCAACAAGAAGAAATCTATGGTGGAACAGTAGTTTTTCAAAAAGAAGCTGGCGTGAGCCCCCAGTGGGGTaGCCAAGGTGGCAGGCGCAA | + |
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Preference number: 4 (lower is better) Translates to: STRRNLWWNSSFSKRSWREPPVG*PRWQAQ Trigger: TTGCGCCTGCCACCTTGGTCACCCCACTGGGGGCTC...ACGCCAGCTTCTTTTTGAAAAACTACTGTTCCACCATAGATTTCTTCTTGTTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS-3UTR CCA 90 bp | TCAACAAGAAGAAATCTATGGTGGAACAGTAGTTTTTCAAAAAGAAGCTGGCGTGCAGGGCTCTCCGGGTaGCAGCCTCAGCTGTACCCC | + |
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Preference number: 4 (lower is better) Translates to: STRRNLWWNSSFSKRSWRAGLSG*QPQLYP Trigger: GGGGTACAGCTGAGGCTGCCACCCGGAGAGCCCTGC...ACGCCAGCTTCTTTTTGAAAAACTACTGTTCCACCATAGATTTCTTCTTGTTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS-3UTR TCA 90 bp | CACCTTGAACCCAAACACTCAGGAGATGGAAGCCAAGGGGTGCTGAACTTGAGGCAGCCTATTTTCCCGTaGATATTCAAGCGCTCATTT | + |
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Preference number: 4 (lower is better) Translates to: HLEPKHSGDGSQGVLNLRQPIFP*IFKRSF Trigger: AAATGAGCGCTTGAATATTCACGGGAAAATAGGCTG...CCTCAAGTTCAGCACCCCTTGGCTTCCATCTCCTGAGTGTTTGGGTTCAAGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS-3UTR CCA 90 bp | CAAGGAAAGCCAGTAAAAGAATTTGTACAGGTTTCAAACATCCTACCATTTCAGGCTCAGAGCCCCCAGTaGGGTGACCAAGGTGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: QGKPVKEFVQVSNILPFQAQSPQ*GDQGGR Trigger: CCTGCCACCTTGGTCACCCCACTGGGGGCTCTGAGC...CTGAAATGGTAGGATGTTTGAAACCTGTACAAATTCTTTTACTGGCTTTCCTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR CAA 72 bp | GTTTTTCAAAAAGAAGCTGGCGTGATGGTACACACCTaGAACCCAAACACTCAGGAGATGGAAGCCAAGGGG | + |
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Preference number: 4 (lower is better) Translates to: VFQKEAGVMVHT*NPNTQEMEAKG Trigger: CCCCTTGGCTTCCATCTCCTGAGTGTTTGGGTTCAAGGTGTGTACCATCACGCCAGCTTCTTTTTGAAAAAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS-3UTR GCA 90 bp | TGGTGGAACAGTAGTTTTTCAAAAAGAAGCTGGCGTGATGGTACACACCTTGAAATGTCCACCTTGCCCTaGTCTGGTGATGCCCTTGTC | + |
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Preference number: 4 (lower is better) Translates to: WWNSSFSKRSWRDGTHLEMSTLP*SGDALV Trigger: GACAAGGGCATCACCAGAGCAGGGCAAGGTGGACAT...TTCAAGGTGTGTACCATCACGCCAGCTTCTTTTTGAAAAACTACTGTTCCACCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS-3UTR GCA 90 bp | GAAGATACCCCGGGGGAACCAGGTGAGATTATCAAAGCAACAAGGAAAGCCAGTTATCTCCAGCTTTCATaGCATACCACTCCTGGAACA | + |
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Preference number: 4 (lower is better) Translates to: EDTPGEPGEIIKATRKASYLQLS*HTTPGT Trigger: TGTTCCAGGAGTGGTATGGCATGAAAGCTGGAGATA...ACTGGCTTTCCTTGTTGCTTTGATAATCTCACCTGGTTCCCCCGGGGTATCTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS-3UTR CCA 90 bp | CACCTTGAACCCAAACACTCAGGAGATGGAAGCCAAGGGGTGCTGAACTTGAGGAAAGGAAACGAACCCTaGATCTCTCAATTTCATTTC | + |
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Preference number: 4 (lower is better) Translates to: HLEPKHSGDGSQGVLNLRKGNEP*ISQFHF Trigger: GAAATGAAATTGAGAGATCCAGGGTTCGTTTCCTTT...CCTCAAGTTCAGCACCCCTTGGCTTCCATCTCCTGAGTGTTTGGGTTCAAGGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR CAA 72 bp | TTTGGTTCTACTGGTTTTATTATTCGGCCCCTTGTGTaGAGGATCAAACCCAGTGCCTGTGTGCATGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: FGSTGFIIRPLV*RIKPSACVHAE Trigger: CTCTGCATGCACACAGGCACTGGGTTTGATCCTCAACACAAGGGGCCGAATAATAAAACCAGTAGAACCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS-3UTR GCA 90 bp | CCAGAGGGATGCAGTAGTTTACTCTTCCTCCAGCAGCATCTTCCCACTCGAGAAATAGGAAGACAATATTaGACTTATGAGAACGCTCAG | + |
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Preference number: 4 (lower is better) Translates to: PEGCSSLLFLQQHLPTREIGRQY*TYENAQ Trigger: CTGAGCGTTCTCATAAGTGCAATATTGTCTTCCTAT...TTCTCGAGTGGGAAGATGCTGCTGGAGGAAGAGTAAACTACTGCATCCCTCTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS-3UTR TCA 90 bp | TCAACAAGAAGAAATCTATGGTGGAACAGTAGTTTTTCAAAAAGAAGCTGGCGTACTCTGACACATTTGTaGTCTCGCACGAAGCCCGGG | + |
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Preference number: 4 (lower is better) Translates to: STRRNLWWNSSFSKRSWRTLTHL*SRTKPG Trigger: CCCGGGCTTCGTGCGAGATCACAAATGTGTCAGAGT...ACGCCAGCTTCTTTTTGAAAAACTACTGTTCCACCATAGATTTCTTCTTGTTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS-3UTR CCA 90 bp | TGGTTCTACTGGTTTTATTATTCGGCCCCTTGTGTTGAGGATCAAACCCAGTGCGTTCTGATTGCCATTTaGAGAAAGGGCTTCTTTCTT | + |
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Preference number: 4 (lower is better) Translates to: WFYWFYYSAPCVEDQTQCVLIAI*RKGFFL Trigger: AAGAAAGAAGCCCTTTCTCCAAATGGCAATCAGAAC...GCACTGGGTTTGATCCTCAACACAAGGGGCCGAATAATAAAACCAGTAGAACCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS-3UTR TCA 90 bp | TCAACAAGAAGAAATCTATGGTGGAACAGTAGTTTTTCAAAAAGAAGCTGGCGTGCATGGTCAACAGGATaGAGAACAGGGGATCCTTGT | + |
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Preference number: 4 (lower is better) Translates to: STRRNLWWNSSFSKRSWRAWSTG*RTGDPC Trigger: ACAAGGATCCCCTGTTCTTCATCCTGTTGACCATGC...ACGCCAGCTTCTTTTTGAAAAACTACTGTTCCACCATAGATTTCTTCTTGTTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS-3UTR GCA 90 bp | TCAACAAGAAGAAATCTATGGTGGAACAGTAGTTTTTCAAAAAGAAGCTGGCGTGGTGGTCACGGAAAGTaGAAGCATGGTCAACAGGAT | + |
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Preference number: 4 (lower is better) Translates to: STRRNLWWNSSFSKRSWRGGHGK*KHGQQD Trigger: ATCCTGTTGACCATGCTTGCACTTTCCGTGACCACC...ACGCCAGCTTCTTTTTGAAAAACTACTGTTCCACCATAGATTTCTTCTTGTTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS-3UTR TCA 90 bp | TCAACAAGAAGAAATCTATGGTGGAACAGTAGTTTTTCAAAAAGAAGCTGGCGTACAATATTGCACTTATaGGAACGCTCAGAGCCCCCA | + |
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Preference number: 4 (lower is better) Translates to: STRRNLWWNSSFSKRSWRTILHL*ERSEPP Trigger: TGGGGGCTCTGAGCGTTCTCATAAGTGCAATATTGT...ACGCCAGCTTCTTTTTGAAAAACTACTGTTCCACCATAGATTTCTTCTTGTTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS-3UTR CCA 90 bp | CCAAATCCATTGAGCAGAAGAATTATTCTGAGACAAATGTATGTCTTTGGCTTCAAACGCTGGAGCTTATaGCCAATACCAAGCCCACAT | + |
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Preference number: 4 (lower is better) Translates to: PNPLSRRIILRQMYVFGFKRWSL*PIPSPH Trigger: ATGTGGGCTTGGTATTGGCCATAAGCTCCAGCGTTT...GAAGCCAAAGACATACATTTGTCTCAGAATAATTCTTCTGCTCAATGGATTTGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS-3UTR CCA 90 bp | CCAAATCCATTGAGCAGAAGAATTATTCTGAGACAAATGTATGTCTTTGGCTTCACTCCTGGAACAGGATaGCAGAACAAGTTACCACCA | + |
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Preference number: 4 (lower is better) Translates to: PNPLSRRIILRQMYVFGFTPGTG*QNKLPP Trigger: TGGTGGTAACTTGTTCTGCCATCCTGTTCCAGGAGT...GAAGCCAAAGACATACATTTGTCTCAGAATAATTCTTCTGCTCAATGGATTTGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR CAA 72 bp | AAAGCTGTAAAAGGAATCTGTTGGTTGTTCTCAGTTTaGGATGACCCACCTTTTAGGGATAAGACCTTTGAG | + |
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Preference number: 4 (lower is better) Translates to: KAVKGICWLFSV*DDPPFRDKTFE Trigger: CTCAAAGGTCTTATCCCTAAAAGGTGGGTCATCCAAAACTGAGAACAACCAACAGATTCCTTTTACAGCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS-3UTR TCA 90 bp | GTGAGATTATCAAAGCAACAAGGAAAGCCAGTAAAAGAATTTGTACAGGTTTCACAAAATCAGCACCAGTaGGATCACAGAGATGATCAC | + |
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Preference number: 4 (lower is better) Translates to: VRLSKQQGKPVKEFVQVSQNQHQ*DHRDDH Trigger: GTGATCATCTCTGTGATCTCACTGGTGCTGATTTTG...TGAAACCTGTACAAATTCTTTTACTGGCTTTCCTTGTTGCTTTGATAATCTCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS-3UTR GCA 90 bp | CCAAATCCATTGAGCAGAAGAATTATTCTGAGACAAATGTATGTCTTTGGCTTCCCAATACGCTTAAAATaGAGCCTATTTTCCCGTGAA | + |
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Preference number: 4 (lower is better) Translates to: PNPLSRRIILRQMYVFGFPIRLK*SLFSRE Trigger: TTCACGGGAAAATAGGCTGCATTTTAAGCGTATTGG...GAAGCCAAAGACATACATTTGTCTCAGAATAATTCTTCTGCTCAATGGATTTGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS-3UTR GCA 90 bp | CCAAATCCATTGAGCAGAAGAATTATTCTGAGACAAATGTATGTCTTTGGCTTCCATAACTGTTCTGATTaGCATTTGGAGAAAGGGCTT | + |
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Preference number: 4 (lower is better) Translates to: PNPLSRRIILRQMYVFGFHNCSD*HLEKGL Trigger: AAGCCCTTTCTCCAAATGGCAATCAGAACAGTTATG...GAAGCCAAAGACATACATTTGTCTCAGAATAATTCTTCTGCTCAATGGATTTGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR CAA 72 bp | GGAGAGTGGACAATGATGAATTTGCCTTCACTTGGATaGTCTAAAATTAATAATGTGACTGAAACTGAGGAA | + |
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Preference number: 4 (lower is better) Translates to: GEWTMMNLPSLG*SKINNVTETEE Trigger: TTCCTCAGTTTCAGTCACATTATTAATTTTAGACAATCCAAGTGAAGGCAAATTCATCATTGTCCACTCTCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| 3UTR CAA 72 bp | GTTCTGCATTGTGATGGAGAGTGGACAATGATGAATTaGCCTTCACTTGGATTGTCTAAAATTAATAATGTG | + |
|
Preference number: 4 (lower is better) Translates to: VLHCDGEWTMMN*PSLGLSKINNV Trigger: CACATTATTAATTTTAGACAATCCAAGTGAAGGCAAATTCATCATTGTCCACTCTCCATCACAATGCAGAAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS TCA 90 bp | GGTTCGTGTAGACGACAGGATAAGGCAGCGACTCTGACACATTTGTaGTCTCGCACGAAGCCCGGGAAGAGTTGGAGCAGACCAGCGACA | + |
|
Preference number: 5 (lower is better) Translates to: GSCRRQDKAATLTHL*SRTKPGKSWSRPAT Trigger: TGTCGCTGGTCTGCTCCAACTCTTCCCGGGCTTCGTGCGAGATCACAAATGTGTCAGAGTCGCTGCCTTATCCTGTCGTCTACACGAACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS TCA 90 bp | AGAGGAATTCAGGTTCGTGTAGACGACAGGATAAGGCAGCGACTCTaGCACATTTGTGATCTCGCACGAAGCCCGGGAAGAGTTGGAGCA | + |
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Preference number: 5 (lower is better) Translates to: RGIQVRVDDRIRQRL*HICDLARSPGRVGA Trigger: TGCTCCAACTCTTCCCGGGCTTCGTGCGAGATCACAAATGTGTCAGAGTCGCTGCCTTATCCTGTCGTCTACACGAACCTGAATTCCTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS-3UTR CAA 90 bp | TGGTGGAACAGTAGTTTTTCAAAAAGAAGCTGGCGTGATGGTACACACCTTGAACCTCTCCGGCTCCCATaGACAGCAGTCCTGCCCACC | + |
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Preference number: 5 (lower is better) Translates to: WWNSSFSKRSWRDGTHLEPLRLP*TAVLPT Trigger: GGTGGGCAGGACTGCTGTCAATGGGAGCCGGAGAGG...TTCAAGGTGTGTACCATCACGCCAGCTTCTTTTTGAAAAACTACTGTTCCACCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS-3UTR CAA 90 bp | TGGTGGAACAGTAGTTTTTCAAAAAGAAGCTGGCGTGATGGTACACACCTTGAAGCTCTGGTGATGCCCTaGTCGGCCAGTTGCAAGAGA | + |
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Preference number: 5 (lower is better) Translates to: WWNSSFSKRSWRDGTHLEALVMP*SASCKR Trigger: TCTCTTGCAACTGGCCGACAAGGGCATCACCAGAGC...TTCAAGGTGTGTACCATCACGCCAGCTTCTTTTTGAAAAACTACTGTTCCACCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS-3UTR CAA 90 bp | CCAGAGGGATGCAGTAGTTTACTCTTCCTCCAGCAGCATCTTCCCACTCGAGAATGTTCTGATTGCCATTaGGAGAAAGGGCTTCTTTCT | + |
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Preference number: 5 (lower is better) Translates to: PEGCSSLLFLQQHLPTRECSDCH*EKGLLS Trigger: AGAAAGAAGCCCTTTCTCCAAATGGCAATCAGAACA...TTCTCGAGTGGGAAGATGCTGCTGGAGGAAGAGTAAACTACTGCATCCCTCTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS-3UTR CAA 90 bp | TCAACAAGAAGAAATCTATGGTGGAACAGTAGTTTTTCAAAAAGAAGCTGGCGTGAAGCCCGGGAAGAGTaGGAGCAGACCAGCGACAGT | + |
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Preference number: 5 (lower is better) Translates to: STRRNLWWNSSFSKRSWREAREE*EQTSDS Trigger: ACTGTCGCTGGTCTGCTCCAACTCTTCCCGGGCTTC...ACGCCAGCTTCTTTTTGAAAAACTACTGTTCCACCATAGATTTCTTCTTGTTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS-3UTR CAA 90 bp | GAAGATACCCCGGGGGAACCAGGTGAGATTATCAAAGCAACAAGGAAAGCCAGTAAGAGACCCTTCTTTTaGAGTATGAAACTAGAGCCA | + |
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Preference number: 5 (lower is better) Translates to: EDTPGEPGEIIKATRKASKRPFF*SMKLEP Trigger: TGGCTCTAGTTTCATACTCAAAAAGAAGGGTCTCTT...ACTGGCTTTCCTTGTTGCTTTGATAATCTCACCTGGTTCCCCCGGGGTATCTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS-3UTR CAA 90 bp | CCAAATCCATTGAGCAGAAGAATTATTCTGAGACAAATGTATGTCTTTGGCTTCGTCACCAGGGATGTGTaGAAAGTGTCCAGGGCCTTG | + |
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Preference number: 5 (lower is better) Translates to: PNPLSRRIILRQMYVFGFVTRDV*KVSRAL Trigger: CAAGGCCCTGGACACTTTCAACACATCCCTGGTGAC...GAAGCCAAAGACATACATTTGTCTCAGAATAATTCTTCTGCTCAATGGATTTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS TCA 90 bp | CAATACCAAGCCCACATACAGATTGTATTTGTTTTCTACACTTGCTaGAATGCTGAAGTTGGTTTTAGAGGAATTCAGGTTCGTGTAGAC | + |
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Preference number: 5 (lower is better) Translates to: QYQAHIQIVFVFYTC*NAEVGFRGIQVRVD Trigger: GTCTACACGAACCTGAATTCCTCTAAAACCAACTTCAGCATTTCAGCAAGTGTAGAAAACAAATACAATCTGTATGTGGGCTTGGTATTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS CCA 72 bp | GAGTTGGAGCAGACCAGCGACAGTACATACCCTTCATaGCAGGGCTCTCCGGGTGGCAGCCTCAGCTGTACC | + |
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Preference number: 6 (lower is better) Translates to: ELEQTSDSTYPS*QGSPGGSLSCT Trigger: GGTACAGCTGAGGCTGCCACCCGGAGAGCCCTGCCATGAAGGGTATGTACTGTCGCTGGTCTGCTCCAACTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS CAA 90 bp | AGCGACTCTGACACATTTGTGATCTCGCACGAAGCCCGGGAAGAGTaGGAGCAGACCAGCGACAGTACATACCCTTCATGGCAGGGCTCT | + |
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Preference number: 6 (lower is better) Translates to: SDSDTFVISHEAREE*EQTSDSTYPSWQGS Trigger: AGAGCCCTGCCATGAAGGGTATGTACTGTCGCTGGTCTGCTCCAACTCTTCCCGGGCTTCGTGCGAGATCACAAATGTGTCAGAGTCGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS TCA 72 bp | CAGGTTCGTGTAGACGACAGGATAAGGCAGCGACTCTaGCACATTTGTGATCTCGCACGAAGCCCGGGAAGA | + |
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Preference number: 6 (lower is better) Translates to: QVRVDDRIRQRL*HICDLARSPGR Trigger: TCTTCCCGGGCTTCGTGCGAGATCACAAATGTGTCAGAGTCGCTGCCTTATCCTGTCGTCTACACGAACCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS CAA 72 bp | GACACATTTGTGATCTCGCACGAAGCCCGGGAAGAGTaGGAGCAGACCAGCGACAGTACATACCCTTCATGG | + |
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Preference number: 6 (lower is better) Translates to: DTFVISHEAREE*EQTSDSTYPSW Trigger: CCATGAAGGGTATGTACTGTCGCTGGTCTGCTCCAACTCTTCCCGGGCTTCGTGCGAGATCACAAATGTGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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| CDS TCA 72 bp | GGGTGGTCACGGAAAGTGCAAGCATGGTCAACAGGATaGAGAACAGGGGATCCTTGTAAACAGGCTTCCGTT | + |
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Preference number: 6 (lower is better) Translates to: GWSRKVQAWSTG*RTGDPCKQASV Trigger: AACGGAAGCCTGTTTACAAGGATCCCCTGTTCTTCATCCTGTTGACCATGCTTGCACTTTCCGTGACCACCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087212.8 |
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