Pregenerated sensors for NIPA2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030452Ensembl transcript IDs: ENSMUST00000032635.14, ENSMUST00000117812.8, ENSMUST00000119041.8, ENSMUST00000119201.8, ENSMUST00000152649.8
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TATGGCCCGAAAAGGACTTACATAGAGGGAGTCAGAGGAAAAGAAGGCAAGAATAGCTCTTCCTGTCAGTaGGGGATAGGATGGAGGGGA | + |
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Preference number: 2 (lower is better) Translates to: YGPKRTYIEGVRGKEGKNSSSCQ*GIGWRG Trigger: TCCCCTCCATCCTATCCCTCACTGACAGGAAGAGCT...ATTCTTGCCTTCTTTTCCTCTGACTCCCTCTATGTAAGTCCTTTTCGGGCCATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| 3UTR-3UTR GCA 90 bp | TATGGCCCGAAAAGGACTTACATAGAGGGAGTCAGAGGAAAAGAAGGCAAGAATGGGCCAGCAGATGTGTaGGGGAAACCAGATGTTTGG | + |
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Preference number: 2 (lower is better) Translates to: YGPKRTYIEGVRGKEGKNGPADV*GKPDVW Trigger: CCAAACATCTGGTTTCCCGCACACATCTGCTGGCCC...ATTCTTGCCTTCTTTTCCTCTGACTCCCTCTATGTAAGTCCTTTTCGGGCCATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| 3UTR-3UTR TCA 90 bp | TATGGCCCGAAAAGGACTTACATAGAGGGAGTCAGAGGAAAAGAAGGCAAGAATCAATCTAGCCCATTCTaGACCACACTGAGAGGTCCA | + |
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Preference number: 2 (lower is better) Translates to: YGPKRTYIEGVRGKEGKNQSSPF*TTLRGP Trigger: TGGACCTCTCAGTGTGGTTCAGAATGGGCTAGATTG...ATTCTTGCCTTCTTTTCCTCTGACTCCCTCTATGTAAGTCCTTTTCGGGCCATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| 3UTR-3UTR CCA 90 bp | TATGGCCCGAAAAGGACTTACATAGAGGGAGTCAGAGGAAAAGAAGGCAAGAATGCTACTATACAACCATaGGCAGGACCAGGAAACAGC | + |
|
Preference number: 2 (lower is better) Translates to: YGPKRTYIEGVRGKEGKNATIQP*AGPGNS Trigger: GCTGTTTCCTGGTCCTGCCCATGGTTGTATAGTAGC...ATTCTTGCCTTCTTTTCCTCTGACTCCCTCTATGTAAGTCCTTTTCGGGCCATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| 3UTR-3UTR TCA 90 bp | TATGGCCCGAAAAGGACTTACATAGAGGGAGTCAGAGGAAAAGAAGGCAAGAATAAGAGCTCCATAAGATaGCACAGAGATCCAGTCACC | + |
|
Preference number: 2 (lower is better) Translates to: YGPKRTYIEGVRGKEGKNKSSIR*HRDPVT Trigger: GGTGACTGGATCTCTGTGTCATCTTATGGAGCTCTT...ATTCTTGCCTTCTTTTCCTCTGACTCCCTCTATGTAAGTCCTTTTCGGGCCATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| 3UTR-3UTR TCA 90 bp | CCATGGAAACAGCAAGTACTAACTGATAGCACAGTGGGTTTTTCCAAAAGGGGGAGTATGATGAGGTATTaGTGGAATGGGGATCACAAA | + |
|
Preference number: 2 (lower is better) Translates to: PWKQQVLTDSTVGFSKRGSMMRY*WNGDHK Trigger: TTTGTGATCCCCATTCCATCAATACCTCATCATACT...CCCCCTTTTGGAAAAACCCACTGTGCTATCAGTTAGTACTTGCTGTTTCCATGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| 3UTR-3UTR GCA 90 bp | TCTAAATTTAAGGAAACTCAAGTTTCTGTTGATAAGGCAGAGTTAAGGGCTGAAGGGCCAGCAGATGTGTaGGGGAAACCAGATGTTTGG | + |
|
Preference number: 2 (lower is better) Translates to: SKFKETQVSVDKAELRAEGPADV*GKPDVW Trigger: CCAAACATCTGGTTTCCCGCACACATCTGCTGGCCC...TTCAGCCCTTAACTCTGCCTTATCAACAGAAACTTGAGTTTCCTTAAATTTAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| 3UTR-3UTR CCA 90 bp | TATGGCCCGAAAAGGACTTACATAGAGGGAGTCAGAGGAAAAGAAGGCAAGAATGAGATCCAGTCACCATaGAAACAGCAAGTACTAACT | + |
|
Preference number: 2 (lower is better) Translates to: YGPKRTYIEGVRGKEGKNEIQSP*KQQVLT Trigger: AGTTAGTACTTGCTGTTTCCATGGTGACTGGATCTC...ATTCTTGCCTTCTTTTCCTCTGACTCCCTCTATGTAAGTCCTTTTCGGGCCATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| 3UTR-3UTR CCA 90 bp | CCATGGAAACAGCAAGTACTAACTGATAGCACAGTGGGTTTTTCCAAAAGGGGGGAGGTATTGATGGAATaGGGATCACAAATGTACATT | + |
|
Preference number: 2 (lower is better) Translates to: PWKQQVLTDSTVGFSKRGEVLME*GSQMYI Trigger: AATGTACATTTGTGATCCCCATTCCATCAATACCTC...CCCCCTTTTGGAAAAACCCACTGTGCTATCAGTTAGTACTTGCTGTTTCCATGG 42% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| 3UTR-3UTR GCA 90 bp | TATGGCCCGAAAAGGACTTACATAGAGGGAGTCAGAGGAAAAGAAGGCAAGAATCAACCTGCCATTTTATaGAAGCACGAGTTTCTAAAT | + |
|
Preference number: 2 (lower is better) Translates to: YGPKRTYIEGVRGKEGKNQPAIL*KHEFLN Trigger: ATTTAGAAACTCGTGCTTGCATAAAATGGCAGGTTG...ATTCTTGCCTTCTTTTCCTCTGACTCCCTCTATGTAAGTCCTTTTCGGGCCATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| 3UTR-3UTR CCA 90 bp | TATGGCCCGAAAAGGACTTACATAGAGGGAGTCAGAGGAAAAGAAGGCAAGAATGAGGTATTGATGGAATaGGGATCACAAATGTACATT | + |
|
Preference number: 2 (lower is better) Translates to: YGPKRTYIEGVRGKEGKNEVLME*GSQMYI Trigger: AATGTACATTTGTGATCCCCATTCCATCAATACCTC...ATTCTTGCCTTCTTTTCCTCTGACTCCCTCTATGTAAGTCCTTTTCGGGCCATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| 3UTR CAA 90 bp | GGCCAAATAAAATGCTTGCATACAAGATTCCGTACGTATAAAGTGTaGTATGTACAACACACATTCTCAATGAGGAAACTCTTCACCCCC | + |
|
Preference number: 2 (lower is better) Translates to: GQIKCLHTRFRTYKV*YVQHTFSMRKLFTP Trigger: GGGGGTGAAGAGTTTCCTCATTGAGAATGTGTGTTGTACATACAACACTTTATACGTACGGAATCTTGTATGCAAGCATTTTATTTGGCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| 3UTR-3UTR TCA 90 bp | TCTAAATTTAAGGAAACTCAAGTTTCTGTTGATAAGGCAGAGTTAAGGGCTGAAAAGAGCTCCATAAGATaGCACAGAGATCCAGTCACC | + |
|
Preference number: 2 (lower is better) Translates to: SKFKETQVSVDKAELRAEKSSIR*HRDPVT Trigger: GGTGACTGGATCTCTGTGTCATCTTATGGAGCTCTT...TTCAGCCCTTAACTCTGCCTTATCAACAGAAACTTGAGTTTCCTTAAATTTAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| 3UTR-3UTR CCA 90 bp | TCTAAATTTAAGGAAACTCAAGTTTCTGTTGATAAGGCAGAGTTAAGGGCTGAAGAGATCCAGTCACCATaGAAACAGCAAGTACTAACT | + |
|
Preference number: 2 (lower is better) Translates to: SKFKETQVSVDKAELRAEEIQSP*KQQVLT Trigger: AGTTAGTACTTGCTGTTTCCATGGTGACTGGATCTC...TTCAGCCCTTAACTCTGCCTTATCAACAGAAACTTGAGTTTCCTTAAATTTAGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| 3UTR-3UTR TCA 90 bp | TCTAAATTTAAGGAAACTCAAGTTTCTGTTGATAAGGCAGAGTTAAGGGCTGAAAGTATGATGAGGTATTaGTGGAATGGGGATCACAAA | + |
|
Preference number: 2 (lower is better) Translates to: SKFKETQVSVDKAELRAESMMRY*WNGDHK Trigger: TTTGTGATCCCCATTCCATCAATACCTCATCATACT...TTCAGCCCTTAACTCTGCCTTATCAACAGAAACTTGAGTTTCCTTAAATTTAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| 3UTR-3UTR CCA 90 bp | TCTAAATTTAAGGAAACTCAAGTTTCTGTTGATAAGGCAGAGTTAAGGGCTGAAGAGGTATTGATGGAATaGGGATCACAAATGTACATT | + |
|
Preference number: 2 (lower is better) Translates to: SKFKETQVSVDKAELRAEEVLME*GSQMYI Trigger: AATGTACATTTGTGATCCCCATTCCATCAATACCTC...TTCAGCCCTTAACTCTGCCTTATCAACAGAAACTTGAGTTTCCTTAAATTTAGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| 3UTR TCA 72 bp | CTGAACCACACTGAGAGGTCCAAGAGCTCCATAAGATaGCACAGAGATCCAGTCACCATGGAAACAGCAAGT | + |
|
Preference number: 3 (lower is better) Translates to: LNHTERSKSSIR*HRDPVTMETAS Trigger: ACTTGCTGTTTCCATGGTGACTGGATCTCTGTGTCATCTTATGGAGCTCTTGGACCTCTCAGTGTGGTTCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR GCA 90 bp | CCATGGAAACAGCAAGTACTAACTGATAGCACAGTGGGTTTTTCCAAAAGGGGGCAGGCGAGGGGGTGCTaGAGAACAGGCTTTCCAGCC | + |
|
Preference number: 4 (lower is better) Translates to: PWKQQVLTDSTVGFSKRGQARGC*RTGFPA Trigger: GGCTGGAAAGCCTGTTCTGCAGCACCCCCTCGCCTG...CCCCCTTTTGGAAAAACCCACTGTGCTATCAGTTAGTACTTGCTGTTTCCATGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR TCA 90 bp | CCATGGAAACAGCAAGTACTAACTGATAGCACAGTGGGTTTTTCCAAAAGGGGGTTCACCGGCTCCCATTaGCAGCAGTCCAGCCCACCA | + |
|
Preference number: 4 (lower is better) Translates to: PWKQQVLTDSTVGFSKRGFTGSH*QQSSPP Trigger: TGGTGGGCTGGACTGCTGTCAATGGGAGCCGGTGAA...CCCCCTTTTGGAAAAACCCACTGTGCTATCAGTTAGTACTTGCTGTTTCCATGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR GCA 90 bp | TATGGCCCGAAAAGGACTTACATAGAGGGAGTCAGAGGAAAAGAAGGCAAGAATCAGGCGAGGGGGTGCTaGAGAACAGGCTTTCCAGCC | + |
|
Preference number: 4 (lower is better) Translates to: YGPKRTYIEGVRGKEGKNQARGC*RTGFPA Trigger: GGCTGGAAAGCCTGTTCTGCAGCACCCCCTCGCCTG...ATTCTTGCCTTCTTTTCCTCTGACTCCCTCTATGTAAGTCCTTTTCGGGCCATA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR TCA 90 bp | TATGGCCCGAAAAGGACTTACATAGAGGGAGTCAGAGGAAAAGAAGGCAAGAATTTCACCGGCTCCCATTaGCAGCAGTCCAGCCCACCA | + |
|
Preference number: 4 (lower is better) Translates to: YGPKRTYIEGVRGKEGKNFTGSH*QQSSPP Trigger: TGGTGGGCTGGACTGCTGTCAATGGGAGCCGGTGAA...ATTCTTGCCTTCTTTTCCTCTGACTCCCTCTATGTAAGTCCTTTTCGGGCCATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR GCA 90 bp | CCATGGAAACAGCAAGTACTAACTGATAGCACAGTGGGTTTTTCCAAAAGGGGGATCCAGGCGAGGGGGTaGTGCAGAACAGGCTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: PWKQQVLTDSTVGFSKRGIQARG*CRTGFP Trigger: TGGAAAGCCTGTTCTGCAGCACCCCCTCGCCTGGAT...CCCCCTTTTGGAAAAACCCACTGTGCTATCAGTTAGTACTTGCTGTTTCCATGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR TCA 90 bp | CCATGGAAACAGCAAGTACTAACTGATAGCACAGTGGGTTTTTCCAAAAGGGGGTATGCATGGCCTCCTTaGCCTGCTCTCATTGAGCCT | + |
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Preference number: 4 (lower is better) Translates to: PWKQQVLTDSTVGFSKRGYAWPP*PALIEP Trigger: AGGCTCAATGAGAGCAGGTCAAGGAGGCCATGCATA...CCCCCTTTTGGAAAAACCCACTGTGCTATCAGTTAGTACTTGCTGTTTCCATGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR TCA 90 bp | TATGGCCCGAAAAGGACTTACATAGAGGGAGTCAGAGGAAAAGAAGGCAAGAATTATGCATGGCCTCCTTaGCCTGCTCTCATTGAGCCT | + |
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Preference number: 4 (lower is better) Translates to: YGPKRTYIEGVRGKEGKNYAWPP*PALIEP Trigger: AGGCTCAATGAGAGCAGGTCAAGGAGGCCATGCATA...ATTCTTGCCTTCTTTTCCTCTGACTCCCTCTATGTAAGTCCTTTTCGGGCCATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR CCA 90 bp | CCATGGAAACAGCAAGTACTAACTGATAGCACAGTGGGTTTTTCCAAAAGGGGGCATATGCAGCAAAATTaGCCACTTCACCGGCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: PWKQQVLTDSTVGFSKRGHMQQN*PLHRLP Trigger: TGGGAGCCGGTGAAGTGGCCAATTTTGCTGCATATG...CCCCCTTTTGGAAAAACCCACTGTGCTATCAGTTAGTACTTGCTGTTTCCATGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR TCA 90 bp | CCATGGAAACAGCAAGTACTAACTGATAGCACAGTGGGTTTTTCCAAAAGGGGGTCACAATGGAAGTGTTaGAAATGTCCAGAGCCCGGT | + |
|
Preference number: 4 (lower is better) Translates to: PWKQQVLTDSTVGFSKRGSQWKC*KCPEPG Trigger: ACCGGGCTCTGGACATTTTCAACACTTCCATTGTGA...CCCCCTTTTGGAAAAACCCACTGTGCTATCAGTTAGTACTTGCTGTTTCCATGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR GCA 90 bp | TCTAAATTTAAGGAAACTCAAGTTTCTGTTGATAAGGCAGAGTTAAGGGCTGAACAGGCGAGGGGGTGCTaGAGAACAGGCTTTCCAGCC | + |
|
Preference number: 4 (lower is better) Translates to: SKFKETQVSVDKAELRAEQARGC*RTGFPA Trigger: GGCTGGAAAGCCTGTTCTGCAGCACCCCCTCGCCTG...TTCAGCCCTTAACTCTGCCTTATCAACAGAAACTTGAGTTTCCTTAAATTTAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR CCA 90 bp | CCATGGAAACAGCAAGTACTAACTGATAGCACAGTGGGTTTTTCCAAAAGGGGGGTGGAGTCACTAATGTaGCCGGAGCAAATGCATATG | + |
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Preference number: 4 (lower is better) Translates to: PWKQQVLTDSTVGFSKRGVESLM*PEQMHM Trigger: CATATGCATTTGCTCCGGCCACATTAGTGACTCCAC...CCCCCTTTTGGAAAAACCCACTGTGCTATCAGTTAGTACTTGCTGTTTCCATGG 47% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR TCA 90 bp | TCTAAATTTAAGGAAACTCAAGTTTCTGTTGATAAGGCAGAGTTAAGGGCTGAATTCACCGGCTCCCATTaGCAGCAGTCCAGCCCACCA | + |
|
Preference number: 4 (lower is better) Translates to: SKFKETQVSVDKAELRAEFTGSH*QQSSPP Trigger: TGGTGGGCTGGACTGCTGTCAATGGGAGCCGGTGAA...TTCAGCCCTTAACTCTGCCTTATCAACAGAAACTTGAGTTTCCTTAAATTTAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR CCA 90 bp | TATGGCCCGAAAAGGACTTACATAGAGGGAGTCAGAGGAAAAGAAGGCAAGAATGTGGAGTCACTAATGTaGCCGGAGCAAATGCATATG | + |
|
Preference number: 4 (lower is better) Translates to: YGPKRTYIEGVRGKEGKNVESLM*PEQMHM Trigger: CATATGCATTTGCTCCGGCCACATTAGTGACTCCAC...ATTCTTGCCTTCTTTTCCTCTGACTCCCTCTATGTAAGTCCTTTTCGGGCCATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR TCA 90 bp | CCATGGAAACAGCAAGTACTAACTGATAGCACAGTGGGTTTTTCCAAAAGGGGGTCTTCCTTTGGAGCATaGATGACCATAACTGTAGAC | + |
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Preference number: 4 (lower is better) Translates to: PWKQQVLTDSTVGFSKRGSSFGA*MTITVD Trigger: GTCTACAGTTATGGTCATTCATGCTCCAAAGGAAGA...CCCCCTTTTGGAAAAACCCACTGTGCTATCAGTTAGTACTTGCTGTTTCCATGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR GCA 90 bp | TCTAAATTTAAGGAAACTCAAGTTTCTGTTGATAAGGCAGAGTTAAGGGCTGAAATCCAGGCGAGGGGGTaGTGCAGAACAGGCTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: SKFKETQVSVDKAELRAEIQARG*CRTGFP Trigger: TGGAAAGCCTGTTCTGCAGCACCCCCTCGCCTGGAT...TTCAGCCCTTAACTCTGCCTTATCAACAGAAACTTGAGTTTCCTTAAATTTAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR CCA 90 bp | CCATGGAAACAGCAAGTACTAACTGATAGCACAGTGGGTTTTTCCAAAAGGGGGCCAACAACTCTTTTATaGCGATACCCAAACCCTTCA | + |
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Preference number: 4 (lower is better) Translates to: PWKQQVLTDSTVGFSKRGPTTLL*RYPNPS Trigger: TGAAGGGTTTGGGTATCGCCATAAAAGAGTTGTTGG...CCCCCTTTTGGAAAAACCCACTGTGCTATCAGTTAGTACTTGCTGTTTCCATGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR TCA 90 bp | CCATGGAAACAGCAAGTACTAACTGATAGCACAGTGGGTTTTTCCAAAAGGGGGATATCAAGGCCACAATaGCCACAAATGTTGCAAAGA | + |
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Preference number: 4 (lower is better) Translates to: PWKQQVLTDSTVGFSKRGISRPQ*PQMLQR Trigger: TCTTTGCAACATTTGTGGTCATTGTGGCCTTGATAT...CCCCCTTTTGGAAAAACCCACTGTGCTATCAGTTAGTACTTGCTGTTTCCATGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR CCA 90 bp | TATGGCCCGAAAAGGACTTACATAGAGGGAGTCAGAGGAAAAGAAGGCAAGAATCCAACAACTCTTTTATaGCGATACCCAAACCCTTCA | + |
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Preference number: 4 (lower is better) Translates to: YGPKRTYIEGVRGKEGKNPTTLL*RYPNPS Trigger: TGAAGGGTTTGGGTATCGCCATAAAAGAGTTGTTGG...ATTCTTGCCTTCTTTTCCTCTGACTCCCTCTATGTAAGTCCTTTTCGGGCCATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR TCA 90 bp | TATGGCCCGAAAAGGACTTACATAGAGGGAGTCAGAGGAAAAGAAGGCAAGAATATATCAAGGCCACAATaGCCACAAATGTTGCAAAGA | + |
|
Preference number: 4 (lower is better) Translates to: YGPKRTYIEGVRGKEGKNISRPQ*PQMLQR Trigger: TCTTTGCAACATTTGTGGTCATTGTGGCCTTGATAT...ATTCTTGCCTTCTTTTCCTCTGACTCCCTCTATGTAAGTCCTTTTCGGGCCATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR CCA 90 bp | TCTAAATTTAAGGAAACTCAAGTTTCTGTTGATAAGGCAGAGTTAAGGGCTGAACATATGCAGCAAAATTaGCCACTTCACCGGCTCCCA | + |
|
Preference number: 4 (lower is better) Translates to: SKFKETQVSVDKAELRAEHMQQN*PLHRLP Trigger: TGGGAGCCGGTGAAGTGGCCAATTTTGCTGCATATG...TTCAGCCCTTAACTCTGCCTTATCAACAGAAACTTGAGTTTCCTTAAATTTAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR TCA 90 bp | TCTAAATTTAAGGAAACTCAAGTTTCTGTTGATAAGGCAGAGTTAAGGGCTGAATCACAATGGAAGTGTTaGAAATGTCCAGAGCCCGGT | + |
|
Preference number: 4 (lower is better) Translates to: SKFKETQVSVDKAELRAESQWKC*KCPEPG Trigger: ACCGGGCTCTGGACATTTTCAACACTTCCATTGTGA...TTCAGCCCTTAACTCTGCCTTATCAACAGAAACTTGAGTTTCCTTAAATTTAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR CCA 90 bp | TCTAAATTTAAGGAAACTCAAGTTTCTGTTGATAAGGCAGAGTTAAGGGCTGAAGTGGAGTCACTAATGTaGCCGGAGCAAATGCATATG | + |
|
Preference number: 4 (lower is better) Translates to: SKFKETQVSVDKAELRAEVESLM*PEQMHM Trigger: CATATGCATTTGCTCCGGCCACATTAGTGACTCCAC...TTCAGCCCTTAACTCTGCCTTATCAACAGAAACTTGAGTTTCCTTAAATTTAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR TCA 90 bp | TCTAAATTTAAGGAAACTCAAGTTTCTGTTGATAAGGCAGAGTTAAGGGCTGAATCTTCCTTTGGAGCATaGATGACCATAACTGTAGAC | + |
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Preference number: 4 (lower is better) Translates to: SKFKETQVSVDKAELRAESSFGA*MTITVD Trigger: GTCTACAGTTATGGTCATTCATGCTCCAAAGGAAGA...TTCAGCCCTTAACTCTGCCTTATCAACAGAAACTTGAGTTTCCTTAAATTTAGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR CCA 90 bp | TCTAAATTTAAGGAAACTCAAGTTTCTGTTGATAAGGCAGAGTTAAGGGCTGAACCAACAACTCTTTTATaGCGATACCCAAACCCTTCA | + |
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Preference number: 4 (lower is better) Translates to: SKFKETQVSVDKAELRAEPTTLL*RYPNPS Trigger: TGAAGGGTTTGGGTATCGCCATAAAAGAGTTGTTGG...TTCAGCCCTTAACTCTGCCTTATCAACAGAAACTTGAGTTTCCTTAAATTTAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR TCA 90 bp | TCTAAATTTAAGGAAACTCAAGTTTCTGTTGATAAGGCAGAGTTAAGGGCTGAAATATCAAGGCCACAATaGCCACAAATGTTGCAAAGA | + |
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Preference number: 4 (lower is better) Translates to: SKFKETQVSVDKAELRAEISRPQ*PQMLQR Trigger: TCTTTGCAACATTTGTGGTCATTGTGGCCTTGATAT...TTCAGCCCTTAACTCTGCCTTATCAACAGAAACTTGAGTTTCCTTAAATTTAGA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| 3UTR CAA 72 bp | AAATGCTTGCATACAAGATTCCGTACGTATAAAGTGTaGTATGTACAACACACATTCTCAATGAGGAAACTC | + |
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Preference number: 4 (lower is better) Translates to: KCLHTRFRTYKV*YVQHTFSMRKL Trigger: GAGTTTCCTCATTGAGAATGTGTGTTGTACATACAACACTTTATACGTACGGAATCTTGTATGCAAGCATTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| 3UTR CAA 72 bp | CAACTATATTACCAAGTGACAGGCCAAATAAAATGCTaGCATACAAGATTCCGTACGTATAAAGTGTTGTAT | + |
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Preference number: 4 (lower is better) Translates to: QLYYQVTGQIKC*HTRFRTYKVLY Trigger: ATACAACACTTTATACGTACGGAATCTTGTATGCAAGCATTTTATTTGGCCTGTCACTTGGTAATATAGTTG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR CAA 90 bp | CCATGGAAACAGCAAGTACTAACTGATAGCACAGTGGGTTTTTCCAAAAGGGGGCTTCACCGGCTCCCATaGACAGCAGTCCAGCCCACC | + |
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Preference number: 5 (lower is better) Translates to: PWKQQVLTDSTVGFSKRGLHRLP*TAVQPT Trigger: GGTGGGCTGGACTGCTGTCAATGGGAGCCGGTGAAG...CCCCCTTTTGGAAAAACCCACTGTGCTATCAGTTAGTACTTGCTGTTTCCATGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR CAA 90 bp | TATGGCCCGAAAAGGACTTACATAGAGGGAGTCAGAGGAAAAGAAGGCAAGAATCTTCACCGGCTCCCATaGACAGCAGTCCAGCCCACC | + |
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Preference number: 5 (lower is better) Translates to: YGPKRTYIEGVRGKEGKNLHRLP*TAVQPT Trigger: GGTGGGCTGGACTGCTGTCAATGGGAGCCGGTGAAG...ATTCTTGCCTTCTTTTCCTCTGACTCCCTCTATGTAAGTCCTTTTCGGGCCATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR CAA 90 bp | TCTAAATTTAAGGAAACTCAAGTTTCTGTTGATAAGGCAGAGTTAAGGGCTGAACTTCACCGGCTCCCATaGACAGCAGTCCAGCCCACC | + |
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Preference number: 5 (lower is better) Translates to: SKFKETQVSVDKAELRAELHRLP*TAVQPT Trigger: GGTGGGCTGGACTGCTGTCAATGGGAGCCGGTGAAG...TTCAGCCCTTAACTCTGCCTTATCAACAGAAACTTGAGTTTCCTTAAATTTAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR CAA 90 bp | TATGGCCCGAAAAGGACTTACATAGAGGGAGTCAGAGGAAAAGAAGGCAAGAATTATACACAAGAATGTTaGTCTGTCCATGTCGAGGTC | + |
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Preference number: 5 (lower is better) Translates to: YGPKRTYIEGVRGKEGKNYTQEC*SVHVEV Trigger: GACCTCGACATGGACAGACAAACATTCTTGTGTATA...ATTCTTGCCTTCTTTTCCTCTGACTCCCTCTATGTAAGTCCTTTTCGGGCCATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS-3UTR CAA 90 bp | TCTAAATTTAAGGAAACTCAAGTTTCTGTTGATAAGGCAGAGTTAAGGGCTGAATATACACAAGAATGTTaGTCTGTCCATGTCGAGGTC | + |
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Preference number: 5 (lower is better) Translates to: SKFKETQVSVDKAELRAEYTQEC*SVHVEV Trigger: GACCTCGACATGGACAGACAAACATTCTTGTGTATA...TTCAGCCCTTAACTCTGCCTTATCAACAGAAACTTGAGTTTCCTTAAATTTAGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000032635.14 ENSMUST00000117812.8 ENSMUST00000119041.8 ENSMUST00000119201.8 |
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| CDS CCA 72 bp | CTAATGTGGCCGGAGCAAATGCATATGCAGCAAAATTaGCCACTTCACCGGCTCCCACTGCTCTCATTGAGC | + |
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Preference number: 6 (lower is better) Translates to: LMWPEQMHMQQN*PLHRLPLLSLS Trigger: GCTCAATGAGAGCAGTGGGAGCCGGTGAAGTGGCCAATTTTGCTGCATATGCATTTGCTCCGGCCACATTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152649.8 |
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