Pregenerated sensors for NIP7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031917Ensembl transcript IDs: ENSMUST00000034392.13, ENSMUST00000170962.3
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTGTCCCAGGGATTGAACACAGCATCAGGCTTGGTGGCACATGGCTaGTCCACCCTACCAGGCTGTCCACTGAGCTATCTTCTTGGCCTG | + |
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Preference number: 1 (lower is better) Translates to: LSQGLNTASGLVAHG*STLPGCPLSYLLGL Trigger: CAGGCCAAGAAGATAGCTCAGTGGACAGCCTGGTAGGGTGGATCAGCCATGTGCCACCAAGCCTGATGCTGTGTTCAATCCCTGGGACAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR TCA 90 bp | GGTTTAAGACTGGCCAGGATCTCCTTATGTAGACCAGGCTGGCCTTaGACCTATAGAGCTCCATCTGCCTTTGCCTCACCCTCAAGCCCC | + |
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Preference number: 1 (lower is better) Translates to: GLRLARISLCRPGWP*TYRAPSAFASPSSP Trigger: GGGGCTTGAGGGTGAGGCAAAGGCAGATGGAGCTCTATAGGTTCAAGGCCAGCCTGGTCTACATAAGGAGATCCTGGCCAGTCTTAAACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR CCA 90 bp | AACCTTGTCCCAGGGATTGAACACAGCATCAGGCTTGGTGGCACATaGCTGATCCACCCTACCAGGCTGTCCACTGAGCTATCTTCTTGG | + |
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Preference number: 1 (lower is better) Translates to: NLVPGIEHSIRLGGT*LIHPTRLSTELSSW Trigger: CCAAGAAGATAGCTCAGTGGACAGCCTGGTAGGGTGGATCAGCCATGTGCCACCAAGCCTGATGCTGTGTTCAATCCCTGGGACAAGGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR TCA 90 bp | ATCTTGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGGTTTaGACTCCGGACCTTTGGAAGAGCAGTCGGGTGCTCTTACCCACT | + |
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Preference number: 1 (lower is better) Translates to: ILLRMVVSHHVVAGV*TPDLWKSSRVLLPT Trigger: AGTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCCGGAGTTCAAACCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACAAGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR CCA 90 bp | GAGTCAGATCTTGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTaGGGTTTGAACTCCGGACCTTTGGAAGAGCAGTCGGGTGCTCTT | + |
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Preference number: 1 (lower is better) Translates to: ESDLVTDGCEPPCGC*GLNSGPLEEQSGAL Trigger: AAGAGCACCCGACTGCTCTTCCAAAGGTCCGGAGTTCAAACCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACAAGATCTGACTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR CCA 90 bp | GAAAATGAAGCCTCTCTAAGCAGAGAACTTGTCCACCACCACAGCTaGCAAGGGGCAGAACTGAGGCTTGAATACAGACGCTTCCACGCT | + |
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Preference number: 1 (lower is better) Translates to: ENEASLSRELVHHHS*QGAELRLEYRRFHA Trigger: AGCGTGGAAGCGTCTGTATTCAAGCCTCAGTTCTGCCCCTTGCCAGCTGTGGTGGTGGACAAGTTCTCTGCTTAGAGAGGCTTCATTTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR TCA 90 bp | GAAGATGGCTCAGCAGTTCAGAAAGAACATTCTCTTTTAGAGGACTaGAGTTTGGTTCCCAACACCAACAATGGCCAGCTCACAACTGTC | + |
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Preference number: 1 (lower is better) Translates to: EDGSAVQKEHSLLED*SLVPNTNNGQLTTV Trigger: GACAGTTGTGAGCTGGCCATTGTTGGTGTTGGGAACCAAACTTCAGTCCTCTAAAAGAGAATGTTCTTTCTGAACTGCTGAGCCATCTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR TCA 90 bp | AAGCAGGATATACTCACACAGACACGCACGAACAATTTCCTGTTTTaGGACAGGATAACTCTATCCCATGCAGGATGCTTTACAACTGCT | + |
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Preference number: 1 (lower is better) Translates to: KQDILTQTRTNNFLF*DRITLSHAGCFTTA Trigger: AGCAGTTGTAAAGCATCCTGCATGGGATAGAGTTATCCTGTCTCAAAACAGGAAATTGTTCGTGCGTGTCTGTGTGAGTATATCCTGCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR CAA 90 bp | GATCTTGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGGTTaGAACTCCGGACCTTTGGAAGAGCAGTCGGGTGCTCTTACCCAC | + |
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Preference number: 2 (lower is better) Translates to: DLVTDGCEPPCGCWG*NSGPLEEQSGALTH Trigger: GTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCCGGAGTTCAAACCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACAAGATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR-3UTR TCA 90 bp | CTACAAAGGTCAGCAATGTCCCCACCTTCAACCTTGTCCCAGGGATTGAACACAGCCTGGTCTACAAAGTaGGTTCCAGGACTGCCAGGG | + |
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Preference number: 2 (lower is better) Translates to: LQRSAMSPPSTLSQGLNTAWSTK*VPGLPG Trigger: CCCTGGCAGTCCTGGAACTCACTTTGTAGACCAGGC...TGTGTTCAATCCCTGGGACAAGGTTGAAGGTGGGGACATTGCTGACCTTTGTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR CAA 90 bp | CATTGTAGAGGACTACAAAGGTCAGCAATGTCCCCACCTTCAACCTaGTCCCAGGGATTGAACACAGCATCAGGCTTGGTGGCACATGGC | + |
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Preference number: 2 (lower is better) Translates to: HCRGLQRSAMSPPST*SQGLNTASGLVAHG Trigger: GCCATGTGCCACCAAGCCTGATGCTGTGTTCAATCCCTGGGACAAGGTTGAAGGTGGGGACATTGCTGACCTTTGTAGTCCTCTACAATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR-3UTR GCA 90 bp | TTCAACCTTGTCCCAGGGATTGAACACAGCATCAGGCTTGGTGGCACATGGCTGGACCACTGCTGTCCCTaGAGAGGACCTGAGTTTAAT | + |
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Preference number: 2 (lower is better) Translates to: FNLVPGIEHSIRLGGTWLDHCCP*RGPEFN Trigger: ATTAAACTCAGGTCCTCTGCAGGGACAGCAGTGGTC...CAGCCATGTGCCACCAAGCCTGATGCTGTGTTCAATCCCTGGGACAAGGTTGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR CAA 90 bp | CGGTGGCTCACAACCAGTAACTCTAGTTCCAGGTCTGAAATCACCTaGACTTCCTTAGGCACCAGGCACATAAGCAGTGCACATACGTAC | + |
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Preference number: 2 (lower is better) Translates to: RWLTTSNSSSRSEIT*TSLGTRHISSAHTY Trigger: GTACGTATGTGCACTGCTTATGTGCCTGGTGCCTAAGGAAGTCAAGGTGATTTCAGACCTGGAACTAGAGTTACTGGTTGTGAGCCACCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR-3UTR GCA 90 bp | ATCATTTTAACACAGACAGGGAAGATGGCTCAGCAGTTCAGAAAGAACATTCTCAGCTCCATCTGCCTTTaGCTCACCCTCAAGCCCCCG | + |
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Preference number: 2 (lower is better) Translates to: IILTQTGKMAQQFRKNILSSICL*LTLKPP Trigger: CGGGGGCTTGAGGGTGAGGCAAAGGCAGATGGAGCT...GAGAATGTTCTTTCTGAACTGCTGAGCCATCTTCCCTGTCTGTGTTAAAATGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR-3UTR CCA 90 bp | CTACAAAGGTCAGCAATGTCCCCACCTTCAACCTTGTCCCAGGGATTGAACACAGCACTTCAGAATCAATaGATCCTTGAGTTTGAGGCC | + |
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Preference number: 2 (lower is better) Translates to: LQRSAMSPPSTLSQGLNTALQNQ*ILEFEA Trigger: GGCCTCAAACTCAAGGATCCATTGATTCTGAAGTGC...TGTGTTCAATCCCTGGGACAAGGTTGAAGGTGGGGACATTGCTGACCTTTGTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR-3UTR TCA 90 bp | ATCATTTTAACACAGACAGGGAAGATGGCTCAGCAGTTCAGAAAGAACATTCTCAGACCAGGCTGGCCTTaGACCTATAGAGCTCCATCT | + |
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Preference number: 2 (lower is better) Translates to: IILTQTGKMAQQFRKNILRPGWP*TYRAPS Trigger: AGATGGAGCTCTATAGGTTCAAGGCCAGCCTGGTCT...GAGAATGTTCTTTCTGAACTGCTGAGCCATCTTCCCTGTCTGTGTTAAAATGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR-3UTR GCA 90 bp | CTACAAAGGTCAGCAATGTCCCCACCTTCAACCTTGTCCCAGGGATTGAACACAATAGAAAGTCCACTGTaGTATCATGAGCCTGGAAAA | + |
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Preference number: 2 (lower is better) Translates to: LQRSAMSPPSTLSQGLNTIESPL*YHEPGK Trigger: TTTTCCAGGCTCATGATAGCACAGTGGACTTTCTAT...TGTGTTCAATCCCTGGGACAAGGTTGAAGGTGGGGACATTGCTGACCTTTGTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR CAA 90 bp | CAAGCAGGATATACTCACACAGACACGCACGAACAATTTCCTGTTTaGAGACAGGATAACTCTATCCCATGCAGGATGCTTTACAACTGC | + |
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Preference number: 2 (lower is better) Translates to: QAGYTHTDTHEQFPV*RQDNSIPCRMLYNC Trigger: GCAGTTGTAAAGCATCCTGCATGGGATAGAGTTATCCTGTCTCAAAACAGGAAATTGTTCGTGCGTGTCTGTGTGAGTATATCCTGCTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR-3UTR CCA 90 bp | TCAGTTTTGTGGGTTTTGGGTTTAAGACTGGCCAGGATCTCCTTATGTAGACCAAACACTCTCAGGTTCTaGTTTGTCTGTTTTAGATTT | + |
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Preference number: 2 (lower is better) Translates to: SVLWVLGLRLARISLCRPNTLRF*FVCFRF Trigger: AAATCTAAAACAGACAAACCAGAACCTGAGAGTGTT...TGGTCTACATAAGGAGATCCTGGCCAGTCTTAAACCCAAAACCCACAAAACTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR TCA 72 bp | CGGATGGTTGTGAGCCACCATGTGGTTGCTGGGGTTTaGACTCCGGACCTTTGGAAGAGCAGTCGGGTGCTC | + |
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Preference number: 3 (lower is better) Translates to: RMVVSHHVVAGV*TPDLWKSSRVL Trigger: GAGCACCCGACTGCTCTTCCAAAGGTCCGGAGTTCAAACCCCAGCAACCACATGGTGGCTCACAACCATCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR TCA 72 bp | TGGCACATGGCTGATCCACCCTACCAGGCTGTCCACTaGGCTATCTTCTTGGCCTGTAGTGCCCTTCAACGG | + |
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Preference number: 3 (lower is better) Translates to: WHMADPPYQAVH*AIFLACSALQR Trigger: CCGTTGAAGGGCACTACAGGCCAAGAAGATAGCTCAGTGGACAGCCTGGTAGGGTGGATCAGCCATGTGCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR CCA 72 bp | CCAGGGATTGAACACAGCATCAGGCTTGGTGGCACATaGCTGATCCACCCTACCAGGCTGTCCACTGAGCTA | + |
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Preference number: 3 (lower is better) Translates to: PGIEHSIRLGGT*LIHPTRLSTEL Trigger: TAGCTCAGTGGACAGCCTGGTAGGGTGGATCAGCCATGTGCCACCAAGCCTGATGCTGTGTTCAATCCCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR TCA 72 bp | CCACCACCACAGCTGGCAAGGGGCAGAACTGAGGCTTaGATACAGACGCTTCCACGCTATACCCCACTTAAC | + |
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Preference number: 3 (lower is better) Translates to: PPPQLARGRTEA*IQTLPRYTPLN Trigger: GTTAAGTGGGGTATAGCGTGGAAGCGTCTGTATTCAAGCCTCAGTTCTGCCCCTTGCCAGCTGTGGTGGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR TCA 72 bp | CTGGCCAGGATCTCCTTATGTAGACCAGGCTGGCCTTaGACCTATAGAGCTCCATCTGCCTTTGCCTCACCC | + |
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Preference number: 3 (lower is better) Translates to: LARISLCRPGWP*TYRAPSAFASP Trigger: GGGTGAGGCAAAGGCAGATGGAGCTCTATAGGTTCAAGGCCAGCCTGGTCTACATAAGGAGATCCTGGCCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR CCA 72 bp | GCCTCTCTAAGCAGAGAACTTGTCCACCACCACAGCTaGCAAGGGGCAGAACTGAGGCTTGAATACAGACGC | + |
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Preference number: 3 (lower is better) Translates to: ASLSRELVHHHS*QGAELRLEYRR Trigger: GCGTCTGTATTCAAGCCTCAGTTCTGCCCCTTGCCAGCTGTGGTGGTGGACAAGTTCTCTGCTTAGAGAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR TCA 72 bp | GGATTGAACACAGCATCAGGCTTGGTGGCACATGGCTaGTCCACCCTACCAGGCTGTCCACTGAGCTATCTT | + |
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Preference number: 3 (lower is better) Translates to: GLNTASGLVAHG*STLPGCPLSYL Trigger: AAGATAGCTCAGTGGACAGCCTGGTAGGGTGGATCAGCCATGTGCCACCAAGCCTGATGCTGTGTTCAATCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR CCA 72 bp | CTTGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTaGGGTTTGAACTCCGGACCTTTGGAAGAGCAGTCG | + |
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Preference number: 3 (lower is better) Translates to: LVTDGCEPPCGC*GLNSGPLEEQS Trigger: CGACTGCTCTTCCAAAGGTCCGGAGTTCAAACCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR CCA 72 bp | CCCAGGCTAGCCTTGAACTCTCCAAGTAGCCTGAGCTaGCCTTATACTTGTGATCCACCTGCTTTTGACTCT | + |
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Preference number: 3 (lower is better) Translates to: PRLALNSPSSLS*PYTCDPPAFDS Trigger: AGAGTCAAAAGCAGGTGGATCACAAGTATAAGGCCAGCTCAGGCTACTTGGAGAGTTCAAGGCTAGCCTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR CCA 72 bp | TTTAGAGGACTGAAGTTTGGTTCCCAACACCAACAATaGCCAGCTCACAACTGTCCTTACCTCAGGCTCCAA | + |
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Preference number: 3 (lower is better) Translates to: FRGLKFGSQHQQ*PAHNCPYLRLQ Trigger: TTGGAGCCTGAGGTAAGGACAGTTGTGAGCTGGCCATTGTTGGTGTTGGGAACCAAACTTCAGTCCTCTAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR CCA 72 bp | ATCCACCCTACCAGGCTGTCCACTGAGCTATCTTCTTaGCCTGTAGTGCCCTTCAACGGTTGGAAATATTTT | + |
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Preference number: 3 (lower is better) Translates to: IHPTRLSTELSS*PVVPFNGWKYF Trigger: AAAATATTTCCAACCGTTGAAGGGCACTACAGGCCAAGAAGATAGCTCAGTGGACAGCCTGGTAGGGTGGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR-3UTR CAA 90 bp | GATGGTTGTGAGCCACCATGTGGTTGCTGGGGTTTGAACTCCGGACCTTTGGAAGTCTGTTTTAGATTTTaGAGACAAGGCTCACTATGT | + |
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Preference number: 3 (lower is better) Translates to: DGCEPPCGCWGLNSGPLEVCFRF*RQGSLC Trigger: ACATAGTGAGCCTTGTCTCAAAAATCTAAAACAGAC...TTCCAAAGGTCCGGAGTTCAAACCCCAGCAACCACATGGTGGCTCACAACCATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR GCA 72 bp | CACCTTGACTTCCTTAGGCACCAGGCACATAAGCAGTaGACATACGTACATGCCAACAAAACACTCACACAT | + |
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Preference number: 3 (lower is better) Translates to: HLDFLRHQAHKQ*TYVHANKTLTH Trigger: ATGTGTGAGTGTTTTGTTGGCATGTACGTATGTGCACTGCTTATGTGCCTGGTGCCTAAGGAAGTCAAGGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR TCA 72 bp | CCAAGTTGCGTATCTCAGTGTTGTCCAGATTTAATCTaGTGGCCGCACACAGGAAACAAAGCTAAGTCCTCT | + |
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Preference number: 3 (lower is better) Translates to: PSCVSQCCPDLI*WPHTGNKAKSS Trigger: AGAGGACTTAGCTTTGTTTCCTGTGTGCGGCCATCAGATTAAATCTGGACAACACTGAGATACGCAACTTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034392.13 ENSMUST00000170962.3 |
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| 3UTR CCA 72 bp | TTCAGAATCAATGGATCCTTGAGTTTGAGGCCAGCCTaGGTACATTCTAAGCAGAGATACATAGTCAGAACT | + |
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Preference number: 3 (lower is better) Translates to: FRINGSLSLRPA*VHSKQRYIVRT Trigger: AGTTCTGACTATGTATCTCTGCTTAGAATGTACCCAGGCTGGCCTCAAACTCAAGGATCCATTGATTCTGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR CAA 72 bp | ACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGGTTaGAACTCCGGACCTTTGGAAGAGCAGTCGGGTGCT | + |
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Preference number: 4 (lower is better) Translates to: TDGCEPPCGCWG*NSGPLEEQSGA Trigger: AGCACCCGACTGCTCTTCCAAAGGTCCGGAGTTCAAACCCCAGCAACCACATGGTGGCTCACAACCATCCGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR CAA 72 bp | GGACTACAAAGGTCAGCAATGTCCCCACCTTCAACCTaGTCCCAGGGATTGAACACAGCATCAGGCTTGGTG | + |
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Preference number: 4 (lower is better) Translates to: GLQRSAMSPPST*SQGLNTASGLV Trigger: CACCAAGCCTGATGCTGTGTTCAATCCCTGGGACAAGGTTGAAGGTGGGGACATTGCTGACCTTTGTAGTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| CDS-3UTR TCA 90 bp | GATGGTTGTGAGCCACCATGTGGTTGCTGGGGTTTGAACTCCGGACCTTTGGAACTGTCCACTAGGAGTTaGAGGTTCTCTCCGATGTAC | + |
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Preference number: 4 (lower is better) Translates to: DGCEPPCGCWGLNSGPLELSTRS*RFSPMY Trigger: GTACATCGGAGAGAACCTTCAACTCCTAGTGGACAG...TTCCAAAGGTCCGGAGTTCAAACCCCAGCAACCACATGGTGGCTCACAACCATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| CDS-3UTR CCA 90 bp | GAACCCAAGTTGCGTATCTCAGTGTTGTCCAGATTTAATCTGATGGCCGCACACTGTCTCCGGAGATGTTaGCGGCCAGCTTCAGCATCA | + |
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Preference number: 4 (lower is better) Translates to: EPKLRISVLSRFNLMAAHCLRRC*RPASAS Trigger: TGATGCTGAAGCTGGCCGCCAACATCTCCGGAGACA...GTGTGCGGCCATCAGATTAAATCTGGACAACACTGAGATACGCAACTTGGGTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034392.13 ENSMUST00000170962.3 |
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| 3UTR CAA 72 bp | GCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTaGTTACGGATGGTTGTGAGCCACCATGTGGTTGCT | + |
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Preference number: 4 (lower is better) Translates to: AVFRHSRRGSQI*LRMVVSHHVVA Trigger: AGCAACCACATGGTGGCTCACAACCATCCGTAACAAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| CDS-3UTR CCA 90 bp | CCCAAGTTGCGTATCTCAGTGTTGTCCAGATTTAATCTGATGGCCGCACACAGGACTTTTCGGCAGTCTTaGGTAGACTTTGCTGCCACC | + |
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Preference number: 4 (lower is better) Translates to: PKLRISVLSRFNLMAAHRTFRQS*VDFAAT Trigger: GGTGGCAGCAAAGTCTACCCAAGACTGCCGAAAAGT...CCTGTGTGCGGCCATCAGATTAAATCTGGACAACACTGAGATACGCAACTTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034392.13 ENSMUST00000170962.3 |
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| CDS-3UTR GCA 90 bp | ATTGGAAACTGGTGTGGCGACAGACCTATAATACCATTACCTGAGAGGCTAAGATACACTCGGTCGTTGTaGAGCCGGAAACAGTACGTG | + |
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Preference number: 4 (lower is better) Translates to: IGNWCGDRPIIPLPERLRYTRSL*SRKQYV Trigger: CACGTACTGTTTCCGGCTGCACAACGACCGAGTGTA...TCTTAGCCTCTCAGGTAATGGTATTATAGGTCTGTCGCCACACCAGTTTCCAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| CDS-3UTR GCA 90 bp | AAGTTGCGTATCTCAGTGTTGTCCAGATTTAATCTGATGGCCGCACACAGGAAATACACTCGGTCGTTGTaGAGCCGGAAACAGTACGTG | + |
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Preference number: 4 (lower is better) Translates to: KLRISVLSRFNLMAAHRKYTRSL*SRKQYV Trigger: CACGTACTGTTTCCGGCTGCACAACGACCGAGTGTA...TTTCCTGTGTGCGGCCATCAGATTAAATCTGGACAACACTGAGATACGCAACTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034392.13 ENSMUST00000170962.3 |
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| CDS-3UTR TCA 90 bp | TTGCGTATCTCAGTGTTGTCCAGATTTAATCTGATGGCCGCACACAGGAAACAACTGTCCACTAGGAGTTaGAGGTTCTCTCCGATGTAC | + |
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Preference number: 4 (lower is better) Translates to: LRISVLSRFNLMAAHRKQLSTRS*RFSPMY Trigger: GTACATCGGAGAGAACCTTCAACTCCTAGTGGACAG...TTGTTTCCTGTGTGCGGCCATCAGATTAAATCTGGACAACACTGAGATACGCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034392.13 ENSMUST00000170962.3 |
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| CDS-3UTR GCA 90 bp | CCGCACACAGGAAACAAAGCTAAGTCCTCTCACACAGCAAAATGTTCTTGGAATGTGGAACACCACAATTaGCATGGGGTCCACTTTTCG | + |
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Preference number: 4 (lower is better) Translates to: PHTGNKAKSSHTAKCSWNVEHHN*HGVHFS Trigger: CGAAAAGTGGACCCCATGGCAATTGTGGTGTTCCAC...ATTCCAAGAACATTTTGCTGTGTGAGAGGACTTAGCTTTGTTTCCTGTGTGCGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000034392.13 ENSMUST00000170962.3 |
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| CDS-3UTR CCA 90 bp | ATCATTTTAACACAGACAGGGAAGATGGCTCAGCAGTTCAGAAAGAACATTCTCTGTCTCCGGAGATGTTaGCGGCCAGCTTCAGCATCA | + |
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Preference number: 4 (lower is better) Translates to: IILTQTGKMAQQFRKNILCLRRC*RPASAS Trigger: TGATGCTGAAGCTGGCCGCCAACATCTCCGGAGACA...GAGAATGTTCTTTCTGAACTGCTGAGCCATCTTCCCTGTCTGTGTTAAAATGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR CAA 72 bp | ACAACCAGTAACTCTAGTTCCAGGTCTGAAATCACCTaGACTTCCTTAGGCACCAGGCACATAAGCAGTGCA | + |
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Preference number: 4 (lower is better) Translates to: TTSNSSSRSEIT*TSLGTRHISSA Trigger: TGCACTGCTTATGTGCCTGGTGCCTAAGGAAGTCAAGGTGATTTCAGACCTGGAACTAGAGTTACTGGTTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| CDS-3UTR GCA 90 bp | ACAGGAAACAAAGCTAAGTCCTCTCACACAGCAAAATGTTCTTGGAATGACCGTGTGGAACACCACAATTaGCATGGGGTCCACTTTTCG | + |
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Preference number: 4 (lower is better) Translates to: TGNKAKSSHTAKCSWNDRVEHHN*HGVHFS Trigger: CGAAAAGTGGACCCCATGGCAATTGTGGTGTTCCAC...ACGGTCATTCCAAGAACATTTTGCTGTGTGAGAGGACTTAGCTTTGTTTCCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000034392.13 ENSMUST00000170962.3 |
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| CDS-3UTR GCA 90 bp | CCGCACACAGGAAACAAAGCTAAGTCCTCTCACACAGCAAAATGTTCTTGGAATGTACTCCCCAATGTCTaGTTGGTGGAACACCACAAT | + |
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Preference number: 4 (lower is better) Translates to: PHTGNKAKSSHTAKCSWNVLPNV*LVEHHN Trigger: ATTGTGGTGTTCCACCAAGCAGACATTGGGGAGTAC...ATTCCAAGAACATTTTGCTGTGTGAGAGGACTTAGCTTTGTTTCCTGTGTGCGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034392.13 ENSMUST00000170962.3 |
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| CDS-3UTR TCA 90 bp | CCGCACACAGGAAACAAAGCTAAGTCCTCTCACACAGCAAAATGTTCTTGGAATACCACTCCCTGGTACTaGGATGTGTTCTCAGTAATT | + |
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Preference number: 4 (lower is better) Translates to: PHTGNKAKSSHTAKCSWNTTPWY*DVFSVI Trigger: AATTACTGAGAACACATCTCAGTACCAGGGAGTGGT...ATTCCAAGAACATTTTGCTGTGTGAGAGGACTTAGCTTTGTTTCCTGTGTGCGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| 3UTR CAA 72 bp | TATACTCACACAGACACGCACGAACAATTTCCTGTTTaGAGACAGGATAACTCTATCCCATGCAGGATGCTT | + |
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Preference number: 4 (lower is better) Translates to: YTHTDTHEQFPV*RQDNSIPCRML Trigger: AAGCATCCTGCATGGGATAGAGTTATCCTGTCTCAAAACAGGAAATTGTTCGTGCGTGTCTGTGTGAGTATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| CDS-3UTR CAA 90 bp | TTCAACCTTGTCCCAGGGATTGAACACAGCATCAGGCTTGGTGGCACATGGCTGCACTTTTCGGCAGTCTaGGGTAGACTTTGCTGCCAC | + |
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Preference number: 5 (lower is better) Translates to: FNLVPGIEHSIRLGGTWLHFSAV*GRLCCH Trigger: GTGGCAGCAAAGTCTACCCAAGACTGCCGAAAAGTG...CAGCCATGTGCCACCAAGCCTGATGCTGTGTTCAATCCCTGGGACAAGGTTGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034392.13 |
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| CDS-3UTR CAA 90 bp | TTGCGTATCTCAGTGTTGTCCAGATTTAATCTGATGGCCGCACACAGGAAACAACCCAGCGACACGAGCTaGTCTCCGGAGATGTTGGCG | + |
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Preference number: 5 (lower is better) Translates to: LRISVLSRFNLMAAHRKQPSDTS*SPEMLA Trigger: CGCCAACATCTCCGGAGACAAGCTCGTGTCGCTGGG...TTGTTTCCTGTGTGCGGCCATCAGATTAAATCTGGACAACACTGAGATACGCAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034392.13 ENSMUST00000170962.3 |
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| CDS-3UTR CAA 90 bp | ACAGGAAACAAAGCTAAGTCCTCTCACACAGCAAAATGTTCTTGGAATGACCGTCCCAGCGACACGAGCTaGTCTCCGGAGATGTTGGCG | + |
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Preference number: 5 (lower is better) Translates to: TGNKAKSSHTAKCSWNDRPSDTS*SPEMLA Trigger: CGCCAACATCTCCGGAGACAAGCTCGTGTCGCTGGG...ACGGTCATTCCAAGAACATTTTGCTGTGTGAGAGGACTTAGCTTTGTTTCCTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034392.13 ENSMUST00000170962.3 |
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| CDS-3UTR CAA 90 bp | CCGCACACAGGAAACAAAGCTAAGTCCTCTCACACAGCAAAATGTTCTTGGAATTTGTCTCCGGAGATGTaGGCGGCCAGCTTCAGCATC | + |
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Preference number: 5 (lower is better) Translates to: PHTGNKAKSSHTAKCSWNLSPEM*AASFSI Trigger: GATGCTGAAGCTGGCCGCCAACATCTCCGGAGACAA...ATTCCAAGAACATTTTGCTGTGTGAGAGGACTTAGCTTTGTTTCCTGTGTGCGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034392.13 ENSMUST00000170962.3 |
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| CDS-3UTR CAA 90 bp | AAGTTGCGTATCTCAGTGTTGTCCAGATTTAATCTGATGGCCGCACACAGGAAATTGTCTCCGGAGATGTaGGCGGCCAGCTTCAGCATC | + |
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Preference number: 5 (lower is better) Translates to: KLRISVLSRFNLMAAHRKLSPEM*AASFSI Trigger: GATGCTGAAGCTGGCCGCCAACATCTCCGGAGACAA...TTTCCTGTGTGCGGCCATCAGATTAAATCTGGACAACACTGAGATACGCAACTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034392.13 ENSMUST00000170962.3 |
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| CDS-3UTR CAA 90 bp | AAGTTGCGTATCTCAGTGTTGTCCAGATTTAATCTGATGGCCGCACACAGGAAACACTTTTCGGCAGTCTaGGGTAGACTTTGCTGCCAC | + |
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Preference number: 5 (lower is better) Translates to: KLRISVLSRFNLMAAHRKHFSAV*GRLCCH Trigger: GTGGCAGCAAAGTCTACCCAAGACTGCCGAAAAGTG...TTTCCTGTGTGCGGCCATCAGATTAAATCTGGACAACACTGAGATACGCAACTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034392.13 ENSMUST00000170962.3 |
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| CDS-3UTR CAA 90 bp | CCGCACACAGGAAACAAAGCTAAGTCCTCTCACACAGCAAAATGTTCTTGGAATCGGAACTTGTGGGTCTaGGTAAACTTCCCAAAACAC | + |
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Preference number: 5 (lower is better) Translates to: PHTGNKAKSSHTAKCSWNRNLWV*VNFPKH Trigger: GTGTTTTGGGAAGTTTACCAAGACCCACAAGTTCCG...ATTCCAAGAACATTTTGCTGTGTGAGAGGACTTAGCTTTGTTTCCTGTGTGCGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034392.13 ENSMUST00000170962.3 |
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| CDS CAA 72 bp | GTAAACTTCCCAAAACACGTCCCCAGCGACACGAGCTaGTCTCCGGAGATGTTGGCGGCCAGCTTCAGCATC | + |
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Preference number: 6 (lower is better) Translates to: VNFPKHVPSDTS*SPEMLAASFSI Trigger: GATGCTGAAGCTGGCCGCCAACATCTCCGGAGACAAGCTCGTGTCGCTGGGGACGTGTTTTGGGAAGTTTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034392.13 ENSMUST00000170962.3 |
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| CDS CAA 90 bp | TGGGTCTTGGTAAACTTCCCAAAACACGTCCCCAGCGACACGAGCTaGTCTCCGGAGATGTTGGCGGCCAGCTTCAGCATCATCTCACTC | + |
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Preference number: 6 (lower is better) Translates to: WVLVNFPKHVPSDTS*SPEMLAASFSIISL Trigger: GAGTGAGATGATGCTGAAGCTGGCCGCCAACATCTCCGGAGACAAGCTCGTGTCGCTGGGGACGTGTTTTGGGAAGTTTACCAAGACCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034392.13 ENSMUST00000170962.3 |
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| CDS TCA 72 bp | AAACAGTACGTGCCGTCGGGTCTGTCCACTAGGAGTTaGAGGTTCTCTCCGATGTACTTCGCGATCTTCTCA | + |
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Preference number: 6 (lower is better) Translates to: KQYVPSGLSTRS*RFSPMYFAIFS Trigger: TGAGAAGATCGCGAAGTACATCGGAGAGAACCTTCAACTCCTAGTGGACAGACCCGACGGCACGTACTGTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034392.13 ENSMUST00000170962.3 |
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