Pregenerated sensors for NINJ2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041377Ensembl transcript IDs: ENSMUST00000035244.6, ENSMUST00000112711.9
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CACAGGAAAAGAAGGCAGTGCAGAGTGTGCAGGCTGTGCAGGAGCTaGCTTAACAGACCGAGTTACTGCTGCTGGAAGCAGCTCGGGCCT | + |
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Preference number: 1 (lower is better) Translates to: HRKRRQCRVCRLCRS*LNRPSYCCWKQLGP Trigger: AGGCCCGAGCTGCTTCCAGCAGCAGTAACTCGGTCTGTTAAGGCAGCTCCTGCACAGCCTGCACACTCTGCACTGCCTTCTTTTCCTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| 3UTR GCA 90 bp | GGCCTGGAGCACAGGAAAAGAAGGCAGTGCAGAGTGTGCAGGCTGTaGAGGAGCTGCCTTAACAGACCGAGTTACTGCTGCTGGAAGCAG | + |
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Preference number: 1 (lower is better) Translates to: GLEHRKRRQCRVCRL*RSCLNRPSYCCWKQ Trigger: CTGCTTCCAGCAGCAGTAACTCGGTCTGTTAAGGCAGCTCCTGCACAGCCTGCACACTCTGCACTGCCTTCTTTTCCTGTGCTCCAGGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| 3UTR TCA 90 bp | TCAGATATCTTTATAGATAGATTCCATTTTGCAGAAAGGGAACATTaGGGCCTGGAGCACAGGAAAAGAAGGCAGTGCAGAGTGTGCAGG | + |
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Preference number: 1 (lower is better) Translates to: SDIFIDRFHFAEREH*GLEHRKRRQCRVCR Trigger: CCTGCACACTCTGCACTGCCTTCTTTTCCTGTGCTCCAGGCCTCAATGTTCCCTTTCTGCAAAATGGAATCTATCTATAAAGATATCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| 3UTR-3UTR TCA 90 bp | CTGGTGCTGTGGACAAGAGGCAGGGGTTTCTTCGTAGCCCTTGAAGCTCTCCTGGTCAGGGACAAAGGCTaGAGTGGCTCTAGACCCAGC | + |
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Preference number: 2 (lower is better) Translates to: LVLWTRGRGFFVALEALLVRDKG*SGSRPS Trigger: GCTGGGTCTAGAGCCACTTCAGCCTTTGTCCCTGAC...CAGGAGAGCTTCAAGGGCTACGAAGAAACCCCTGCCTCTTGTCCACAGCACCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| 3UTR-3UTR TCA 90 bp | GCCTGGAGCACAGGAAAAGAAGGCAGTGCAGAGTGTGCAGGCTGTGCAGGAGCTTTTCTTCGTAGCCCTTaGAGCTCTCCTGGAGGCTGT | + |
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Preference number: 2 (lower is better) Translates to: AWSTGKEGSAECAGCAGAFLRSP*SSPGGC Trigger: ACAGCCTCCAGGAGAGCTTCAAGGGCTACGAAGAAA...AGCTCCTGCACAGCCTGCACACTCTGCACTGCCTTCTTTTCCTGTGCTCCAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| 3UTR-3UTR TCA 90 bp | TTACGTCACCCAGGAAAGAGGCCCACTTTAATTCTGGTGCTGTGGACAAGAGGCGTCAGGGACAAAGGCTaGAGTGGCTCTAGACCCAGC | + |
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Preference number: 2 (lower is better) Translates to: LRHPGKRPTLILVLWTRGVRDKG*SGSRPS Trigger: GCTGGGTCTAGAGCCACTTCAGCCTTTGTCCCTGAC...GCCTCTTGTCCACAGCACCAGAATTAAAGTGGGCCTCTTTCCTGGGTGACGTAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| 3UTR-3UTR CCA 90 bp | TTACGTCACCCAGGAAAGAGGCCCACTTTAATTCTGGTGCTGTGGACAAGAGGCCCCTTGAAGCTCTCCTaGAGGCTGTGGGAAATGCTA | + |
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Preference number: 2 (lower is better) Translates to: LRHPGKRPTLILVLWTRGPLKLS*RLWEML Trigger: TAGCATTTCCCACAGCCTCCAGGAGAGCTTCAAGGG...GCCTCTTGTCCACAGCACCAGAATTAAAGTGGGCCTCTTTCCTGGGTGACGTAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| 3UTR GCA 72 bp | GGCCTGGAGCACAGGAAAAGAAGGCAGTGCAGAGTGTaGAGGCTGTGCAGGAGCTGCCTTAACAGACCGAGT | + |
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Preference number: 3 (lower is better) Translates to: GLEHRKRRQCRV*RLCRSCLNRPS Trigger: ACTCGGTCTGTTAAGGCAGCTCCTGCACAGCCTGCACACTCTGCACTGCCTTCTTTTCCTGTGCTCCAGGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| 3UTR GCA 72 bp | AGAAGGCAGTGCAGAGTGTGCAGGCTGTGCAGGAGCTaGCTTAACAGACCGAGTTACTGCTGCTGGAAGCAG | + |
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Preference number: 3 (lower is better) Translates to: RRQCRVCRLCRS*LNRPSYCCWKQ Trigger: CTGCTTCCAGCAGCAGTAACTCGGTCTGTTAAGGCAGCTCCTGCACAGCCTGCACACTCTGCACTGCCTTCT 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| 3UTR GCA 72 bp | CACAGGAAAAGAAGGCAGTGCAGAGTGTGCAGGCTGTaGAGGAGCTGCCTTAACAGACCGAGTTACTGCTGC | + |
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Preference number: 3 (lower is better) Translates to: HRKRRQCRVCRL*RSCLNRPSYCC Trigger: GCAGCAGTAACTCGGTCTGTTAAGGCAGCTCCTGCACAGCCTGCACACTCTGCACTGCCTTCTTTTCCTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS-3UTR GCA 90 bp | GAGCACAGGAAAAGAAGGCAGTGCAGAGTGTGCAGGCTGTGCAGGAGCTGCCTTGCGAATGGCCCTTGCTaGAGCACTGATTTCAGCCGC | + |
|
Preference number: 4 (lower is better) Translates to: EHRKRRQCRVCRLCRSCLANGPC*STDFSR Trigger: GCGGCTGAAATCAGTGCTGCAGCAAGGGCCATTCGC...AAGGCAGCTCCTGCACAGCCTGCACACTCTGCACTGCCTTCTTTTCCTGTGCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS-3UTR CCA 90 bp | GAGCACAGGAAAAGAAGGCAGTGCAGAGTGTGCAGGCTGTGCAGGAGCTGCCTTGCCATGGAGGCTGCATaGTGTGCTCCGAAAGCAGTG | + |
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Preference number: 4 (lower is better) Translates to: EHRKRRQCRVCRLCRSCLAMEAA*CAPKAV Trigger: CACTGCTTTCGGAGCACACCATGCAGCCTCCATGGC...AAGGCAGCTCCTGCACAGCCTGCACACTCTGCACTGCCTTCTTTTCCTGTGCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS-3UTR GCA 90 bp | TTCGTAGCCCTTGAAGCTCTCCTGGAGGCTGTGGGAAATGCTAGTTATCCTGACGCGAATGGCCCTTGCTaGAGCACTGATTTCAGCCGC | + |
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Preference number: 4 (lower is better) Translates to: FVALEALLEAVGNASYPDANGPC*STDFSR Trigger: GCGGCTGAAATCAGTGCTGCAGCAAGGGCCATTCGC...GTCAGGATAACTAGCATTTCCCACAGCCTCCAGGAGAGCTTCAAGGGCTACGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS-3UTR GCA 90 bp | GAGCACAGGAAAAGAAGGCAGTGCAGAGTGTGCAGGCTGTGCAGGAGCTGCCTTGGAGGCTGCATGGTGTaGTCCGAAAGCAGTGATAAA | + |
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Preference number: 4 (lower is better) Translates to: EHRKRRQCRVCRLCRSCLGGCMV*SESSDK Trigger: TTTATCACTGCTTTCGGAGCACACCATGCAGCCTCC...AAGGCAGCTCCTGCACAGCCTGCACACTCTGCACTGCCTTCTTTTCCTGTGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS-3UTR CCA 90 bp | GGTTTCTTCGTAGCCCTTGAAGCTCTCCTGGAGGCTGTGGGAAATGCTAGTTATAGGTCCTGGCAGCCATaGAGGCTGCATGGTGTGCTC | + |
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Preference number: 4 (lower is better) Translates to: GFFVALEALLEAVGNASYRSWQP*RLHGVL Trigger: GAGCACACCATGCAGCCTCCATGGCTGCCAGGACCT...ATAACTAGCATTTCCCACAGCCTCCAGGAGAGCTTCAAGGGCTACGAAGAAACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS-3UTR GCA 90 bp | TTACGTCACCCAGGAAAGAGGCCCACTTTAATTCTGGTGCTGTGGACAAGAGGCGCGCCACGTCTAGCATaGTCTCTGCCACACTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: LRHPGKRPTLILVLWTRGAPRLA*SLPHSS Trigger: AGAAGAGTGTGGCAGAGAGCATGCTAGACGTGGCGC...GCCTCTTGTCCACAGCACCAGAATTAAAGTGGGCCTCTTTCCTGGGTGACGTAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS-3UTR GCA 90 bp | GAAGGCAGTGCAGAGTGTGCAGGCTGTGCAGGAGCTGCCTTAACAGACCGAGTTAGGCTAATGACCACTTaGAGGAGCAGAGAGACAATG | + |
|
Preference number: 4 (lower is better) Translates to: EGSAECAGCAGAALTDRVRLMTT*RSRETM Trigger: CATTGTCTCTCTGCTCCTGCAAGTGGTCATTAGCCT...AACTCGGTCTGTTAAGGCAGCTCCTGCACAGCCTGCACACTCTGCACTGCCTTC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS-3UTR GCA 90 bp | CAGTGCAGAGTGTGCAGGCTGTGCAGGAGCTGCCTTAACAGACCGAGTTACTGCAGGCTAATGACCACTTaGAGGAGCAGAGAGACAATG | + |
|
Preference number: 4 (lower is better) Translates to: QCRVCRLCRSCLNRPSYCRLMTT*RSRETM Trigger: CATTGTCTCTCTGCTCCTGCAAGTGGTCATTAGCCT...GCAGTAACTCGGTCTGTTAAGGCAGCTCCTGCACAGCCTGCACACTCTGCACTG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS-3UTR CCA 90 bp | GGTTTCTTCGTAGCCCTTGAAGCTCTCCTGGAGGCTGTGGGAAATGCTAGTTATGCCATGGAGGCTGCATaGTGTGCTCCGAAAGCAGTG | + |
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Preference number: 4 (lower is better) Translates to: GFFVALEALLEAVGNASYAMEAA*CAPKAV Trigger: CACTGCTTTCGGAGCACACCATGCAGCCTCCATGGC...ATAACTAGCATTTCCCACAGCCTCCAGGAGAGCTTCAAGGGCTACGAAGAAACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS-3UTR CCA 90 bp | ATTCCATTTTGCAGAAAGGGAACATTGAGGCCTGGAGCACAGGAAAAGAAGGCAAGGTCCTGGCAGCCATaGAGGCTGCATGGTGTGCTC | + |
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Preference number: 4 (lower is better) Translates to: IPFCRKGTLRPGAQEKKARSWQP*RLHGVL Trigger: GAGCACACCATGCAGCCTCCATGGCTGCCAGGACCT...TGCCTTCTTTTCCTGTGCTCCAGGCCTCAATGTTCCCTTTCTGCAAAATGGAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS-3UTR GCA 90 bp | TTGAAGCTCTCCTGGAGGCTGTGGGAAATGCTAGTTATCCTGACAAGTCAGGGAGGAGGCTGCATGGTGTaGTCCGAAAGCAGTGATAAA | + |
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Preference number: 4 (lower is better) Translates to: LKLSWRLWEMLVILTSQGGGCMV*SESSDK Trigger: TTTATCACTGCTTTCGGAGCACACCATGCAGCCTCC...TCCCTGACTTGTCAGGATAACTAGCATTTCCCACAGCCTCCAGGAGAGCTTCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS-3UTR GCA 90 bp | GAGCACAGGAAAAGAAGGCAGTGCAGAGTGTGCAGGCTGTGCAGGAGCTGCCTTTTGAGCTTATTTAAATaGCTCTGGTTCTCTACCTCA | + |
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Preference number: 4 (lower is better) Translates to: EHRKRRQCRVCRLCRSCLLSLFK*LWFSTS Trigger: TGAGGTAGAGAACCAGAGGCATTTAAATAAGCTCAA...AAGGCAGCTCCTGCACAGCCTGCACACTCTGCACTGCCTTCTTTTCCTGTGCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS-3UTR GCA 90 bp | ATTCTGGTGCTGTGGACAAGAGGCAGGGGTTTCTTCGTAGCCCTTGAAGCTCTCTTGAGCTTATTTAAATaGCTCTGGTTCTCTACCTCA | + |
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Preference number: 4 (lower is better) Translates to: ILVLWTRGRGFFVALEALLSLFK*LWFSTS Trigger: TGAGGTAGAGAACCAGAGGCATTTAAATAAGCTCAA...GAGAGCTTCAAGGGCTACGAAGAAACCCCTGCCTCTTGTCCACAGCACCAGAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS-3UTR CAA 90 bp | GGCCTGGAGCACAGGAAAAGAAGGCAGTGCAGAGTGTGCAGGCTGTGCAGGAGCCATGGAGTGCCTGTGTaGAAGGTGGATGGTTTCTCG | + |
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Preference number: 5 (lower is better) Translates to: GLEHRKRRQCRVCRLCRSHGVPV*KVDGFS Trigger: CGAGAAACCATCCACCTTCAACACAGGCACTCCATG...GCTCCTGCACAGCCTGCACACTCTGCACTGCCTTCTTTTCCTGTGCTCCAGGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112711.9 |
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| CDS GCA 90 bp | TGCTCTCTGCCACACTCTTCTTGGTGGCATAAAAGTTCAGGTCTATaGGCTGGTTCCCTCCGCGCATGGAGTGCCTGTGTTGAAGGTGGA | + |
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Preference number: 5 (lower is better) Translates to: CSLPHSSWWHKSSGL*AGSLRAWSACVEGG Trigger: TCCACCTTCAACACAGGCACTCCATGCGCGGAGGGAACCAGCGCATAGACCTGAACTTTTATGCCACCAAGAAGAGTGTGGCAGAGAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112711.9 |
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| CDS-3UTR CAA 90 bp | TTCGTAGCCCTTGAAGCTCTCCTGGAGGCTGTGGGAAATGCTAGTTATCCTGACTTCAGCCGCATGGCATaGGACATAAAGAGCGCCACG | + |
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Preference number: 5 (lower is better) Translates to: FVALEALLEAVGNASYPDFSRMA*DIKSAT Trigger: CGTGGCGCTCTTTATGTCCAATGCCATGCGGCTGAA...GTCAGGATAACTAGCATTTCCCACAGCCTCCAGGAGAGCTTCAAGGGCTACGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS-3UTR CAA 90 bp | GCCCTTGAAGCTCTCCTGGAGGCTGTGGGAAATGCTAGTTATCCTGACAAGTCAGAGGCTAATGACCACTaGCAGGAGCAGAGAGACAAT | + |
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Preference number: 5 (lower is better) Translates to: ALEALLEAVGNASYPDKSEANDH*QEQRDN Trigger: ATTGTCTCTCTGCTCCTGCAAGTGGTCATTAGCCTC...TGACTTGTCAGGATAACTAGCATTTCCCACAGCCTCCAGGAGAGCTTCAAGGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS-3UTR CAA 90 bp | TTCGTAGCCCTTGAAGCTCTCCTGGAGGCTGTGGGAAATGCTAGTTATCCTGACGAGGCTAATGACCACTaGCAGGAGCAGAGAGACAAT | + |
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Preference number: 5 (lower is better) Translates to: FVALEALLEAVGNASYPDEANDH*QEQRDN Trigger: ATTGTCTCTCTGCTCCTGCAAGTGGTCATTAGCCTC...GTCAGGATAACTAGCATTTCCCACAGCCTCCAGGAGAGCTTCAAGGGCTACGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS-3UTR CAA 90 bp | CTGGTGCTGTGGACAAGAGGCAGGGGTTTCTTCGTAGCCCTTGAAGCTCTCCTGATGGTGGCAGCATTGTaGAGCTTATTTAAATGCCTC | + |
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Preference number: 5 (lower is better) Translates to: LVLWTRGRGFFVALEALLMVAAL*SLFKCL Trigger: GAGGCATTTAAATAAGCTCAACAATGCTGCCACCAT...CAGGAGAGCTTCAAGGGCTACGAAGAAACCCCTGCCTCTTGTCCACAGCACCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS-3UTR CAA 90 bp | ATTCCATTTTGCAGAAAGGGAACATTGAGGCCTGGAGCACAGGAAAAGAAGGCATTCAGCCGCATGGCATaGGACATAAAGAGCGCCACG | + |
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Preference number: 5 (lower is better) Translates to: IPFCRKGTLRPGAQEKKAFSRMA*DIKSAT Trigger: CGTGGCGCTCTTTATGTCCAATGCCATGCGGCTGAA...TGCCTTCTTTTCCTGTGCTCCAGGCCTCAATGTTCCCTTTCTGCAAAATGGAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS GCA 90 bp | AATAGGATTGCTGGAGGTCCTGGCAGCCATGGAGGCTGCATGGTGTaGTCCGAAAGCAGTGATAAAAATGTTGATGACCACGGTTATGAA | + |
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Preference number: 5 (lower is better) Translates to: NRIAGGPGSHGGCMV*SESSDKNVDDHGYE Trigger: TTCATAACCGTGGTCATCAACATTTTTATCACTGCTTTCGGAGCACACCATGCAGCCTCCATGGCTGCCAGGACCTCCAGCAATCCTATT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS-3UTR CAA 90 bp | TTCGTAGCCCTTGAAGCTCTCCTGGAGGCTGTGGGAAATGCTAGTTATCCTGACGCAGTGATAAAAATGTaGATGACCACGGTTATGAAG | + |
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Preference number: 5 (lower is better) Translates to: FVALEALLEAVGNASYPDAVIKM*MTTVMK Trigger: CTTCATAACCGTGGTCATCAACATTTTTATCACTGC...GTCAGGATAACTAGCATTTCCCACAGCCTCCAGGAGAGCTTCAAGGGCTACGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS-3UTR CAA 90 bp | TTGAAGCTCTCCTGGAGGCTGTGGGAAATGCTAGTTATCCTGACAAGTCAGGGAGCAGTGATAAAAATGTaGATGACCACGGTTATGAAG | + |
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Preference number: 5 (lower is better) Translates to: LKLSWRLWEMLVILTSQGAVIKM*MTTVMK Trigger: CTTCATAACCGTGGTCATCAACATTTTTATCACTGC...TCCCTGACTTGTCAGGATAACTAGCATTTCCCACAGCCTCCAGGAGAGCTTCAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS GCA 90 bp | GTTATGAAGACCAAGATGGTGGCAGCATTGTTGAGCTTATTTAAATaGCTCTGGTTCTCTACCTCATTCAGGTTCAGGATGGCGATGAAC | + |
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Preference number: 5 (lower is better) Translates to: VMKTKMVAALLSLFK*LWFSTSFRFRMAMN Trigger: GTTCATCGCCATCCTGAACCTGAATGAGGTAGAGAACCAGAGGCATTTAAATAAGCTCAACAATGCTGCCACCATCTTGGTCTTCATAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS CCA 90 bp | AAGACCAAGATGGTGGCAGCATTGTTGAGCTTATTTAAATGCCTCTaGTTCTCTACCTCATTCAGGTTCAGGATGGCGATGAACACAAGA | + |
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Preference number: 5 (lower is better) Translates to: KTKMVAALLSLFKCL*FSTSFRFRMAMNTR Trigger: TCTTGTGTTCATCGCCATCCTGAACCTGAATGAGGTAGAGAACCAGAGGCATTTAAATAAGCTCAACAATGCTGCCACCATCTTGGTCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS CAA 90 bp | TCCGCGAATGGCCCTTGCTGCAGCACTGATTTCAGCCGCATGGCATaGGACATAAAGAGCGCCACGTCTAGCATGCTCTCTGCCACACTC | + |
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Preference number: 6 (lower is better) Translates to: SANGPCCSTDFSRMA*DIKSATSSMLSATL Trigger: GAGTGTGGCAGAGAGCATGCTAGACGTGGCGCTCTTTATGTCCAATGCCATGCGGCTGAAATCAGTGCTGCAGCAAGGGCCATTCGCGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS TCA 72 bp | GGTGTAGTACTCCGCGAATGGCCCTTGCTGCAGCACTaGTTTCAGCCGCATGGCATTGGACATAAAGAGCGC | + |
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Preference number: 6 (lower is better) Translates to: GVVLREWPLLQH*FQPHGIGHKER Trigger: GCGCTCTTTATGTCCAATGCCATGCGGCTGAAATCAGTGCTGCAGCAAGGGCCATTCGCGGAGTACTACACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS GCA 72 bp | CCACACTCTTCTTGGTGGCATAAAAGTTCAGGTCTATaGGCTGGTTCCCTCCGCGCATGGAGTGCCTGTGCA | + |
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Preference number: 6 (lower is better) Translates to: PHSSWWHKSSGL*AGSLRAWSACA Trigger: TGCACAGGCACTCCATGCGCGGAGGGAACCAGCGCATAGACCTGAACTTTTATGCCACCAAGAAGAGTGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035244.6 |
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| CDS CAA 72 bp | GGCCCTTGCTGCAGCACTGATTTCAGCCGCATGGCATaGGACATAAAGAGCGCCACGTCTAGCATGCTCTCT | + |
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Preference number: 6 (lower is better) Translates to: GPCCSTDFSRMA*DIKSATSSMLS Trigger: AGAGAGCATGCTAGACGTGGCGCTCTTTATGTCCAATGCCATGCGGCTGAAATCAGTGCTGCAGCAAGGGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS GCA 72 bp | GCTGGAGGTCCTGGCAGCCATGGAGGCTGCATGGTGTaGTCCGAAAGCAGTGATAAAAATGTTGATGACCAC | + |
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Preference number: 6 (lower is better) Translates to: AGGPGSHGGCMV*SESSDKNVDDH Trigger: GTGGTCATCAACATTTTTATCACTGCTTTCGGAGCACACCATGCAGCCTCCATGGCTGCCAGGACCTCCAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS GCA 72 bp | CCACACTCTTCTTGGTGGCATAAAAGTTCAGGTCTATaGGCTGGTTCCCTCCGCGCATGGAGTGCCTGTGTT | + |
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Preference number: 6 (lower is better) Translates to: PHSSWWHKSSGL*AGSLRAWSACV Trigger: AACACAGGCACTCCATGCGCGGAGGGAACCAGCGCATAGACCTGAACTTTTATGCCACCAAGAAGAGTGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112711.9 |
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| CDS CCA 72 bp | GGATTGCTGGAGGTCCTGGCAGCCATGGAGGCTGCATaGTGTGCTCCGAAAGCAGTGATAAAAATGTTGATG | + |
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Preference number: 6 (lower is better) Translates to: GLLEVLAAMEAA*CAPKAVIKMLM Trigger: CATCAACATTTTTATCACTGCTTTCGGAGCACACCATGCAGCCTCCATGGCTGCCAGGACCTCCAGCAATCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS GCA 72 bp | AATAGGATTGCTGGAGGTCCTGGCAGCCATGGAGGCTaGATGGTGTGCTCCGAAAGCAGTGATAAAAATGTT | + |
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Preference number: 6 (lower is better) Translates to: NRIAGGPGSHGG*MVCSESSDKNV Trigger: AACATTTTTATCACTGCTTTCGGAGCACACCATGCAGCCTCCATGGCTGCCAGGACCTCCAGCAATCCTATT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS CAA 90 bp | GCCATGGAGGCTGCATGGTGTGCTCCGAAAGCAGTGATAAAAATGTaGATGACCACGGTTATGAAGACCAAGATGGTGGCAGCATTGTTG | + |
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Preference number: 6 (lower is better) Translates to: AMEAAWCAPKAVIKM*MTTVMKTKMVAALL Trigger: CAACAATGCTGCCACCATCTTGGTCTTCATAACCGTGGTCATCAACATTTTTATCACTGCTTTCGGAGCACACCATGCAGCCTCCATGGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS CAA 72 bp | GCTGCATGGTGTGCTCCGAAAGCAGTGATAAAAATGTaGATGACCACGGTTATGAAGACCAAGATGGTGGCA | + |
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Preference number: 6 (lower is better) Translates to: AAWCAPKAVIKM*MTTVMKTKMVA Trigger: TGCCACCATCTTGGTCTTCATAACCGTGGTCATCAACATTTTTATCACTGCTTTCGGAGCACACCATGCAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS CCA 72 bp | ATGGTGGCAGCATTGTTGAGCTTATTTAAATGCCTCTaGTTCTCTACCTCATTCAGGTTCAGGATGGCGATG | + |
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Preference number: 6 (lower is better) Translates to: MVAALLSLFKCL*FSTSFRFRMAM Trigger: CATCGCCATCCTGAACCTGAATGAGGTAGAGAACCAGAGGCATTTAAATAAGCTCAACAATGCTGCCACCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS CAA 72 bp | ATGACCACGGTTATGAAGACCAAGATGGTGGCAGCATaGTTGAGCTTATTTAAATGCCTCTGGTTCTCTACC | + |
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Preference number: 6 (lower is better) Translates to: MTTVMKTKMVAA*LSLFKCLWFST Trigger: GGTAGAGAACCAGAGGCATTTAAATAAGCTCAACAATGCTGCCACCATCTTGGTCTTCATAACCGTGGTCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS CAA 90 bp | ATGTTGATGACCACGGTTATGAAGACCAAGATGGTGGCAGCATTGTaGAGCTTATTTAAATGCCTCTGGTTCTCTACCTCATTCAGGTTC | + |
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Preference number: 6 (lower is better) Translates to: MLMTTVMKTKMVAAL*SLFKCLWFSTSFRF Trigger: GAACCTGAATGAGGTAGAGAACCAGAGGCATTTAAATAAGCTCAACAATGCTGCCACCATCTTGGTCTTCATAACCGTGGTCATCAACAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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| CDS CAA 90 bp | AAAATGTTGATGACCACGGTTATGAAGACCAAGATGGTGGCAGCATaGTTGAGCTTATTTAAATGCCTCTGGTTCTCTACCTCATTCAGG | + |
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Preference number: 6 (lower is better) Translates to: KMLMTTVMKTKMVAA*LSLFKCLWFSTSFR Trigger: CCTGAATGAGGTAGAGAACCAGAGGCATTTAAATAAGCTCAACAATGCTGCCACCATCTTGGTCTTCATAACCGTGGTCATCAACATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035244.6 ENSMUST00000112711.9 |
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