Pregenerated sensors for NIFK (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026377Ensembl transcript IDs: ENSMUST00000027626.13, ENSMUST00000112688.10
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTGAAGACAAATTCAGGACAGGAAAGGGCACAGTCAGGTTCCCAGTaGCTTTCCTCACTGGAAAACCAAACATGTATTCTTCCTCCAACA | + |
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Preference number: 1 (lower is better) Translates to: LKTNSGQERAQSGSQ*LSSLENQTCILPPT Trigger: TGTTGGAGGAAGAATACATGTTTGGTTTTCCAGTGAGGAAAGCCACTGGGAACCTGACTGTGCCCTTTCCTGTCCTGAATTTGTCTTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027626.13 |
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| 3UTR TCA 90 bp | AAACAAAAGCATAGAAAGGGTACAGAAACTTACAACAGGAGATGGTaGCATTTCTTACTTCCCCACAAAGTTCTTAGGTTCTCTTGTACA | + |
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Preference number: 1 (lower is better) Translates to: KQKHRKGTETYNRRW*HFLLPHKVLRFSCT Trigger: TGTACAAGAGAACCTAAGAACTTTGTGGGGAAGTAAGAAATGTCACCATCTCCTGTTGTAAGTTTCTGTACCCTTTCTATGCTTTTGTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027626.13 |
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| 3UTR-3UTR TCA 90 bp | GTGATTTCCCTTCAGGAACACACACAGCATGTACACTCACTCATACCCCACAACGGGACCGATGAAGCCTaGAGACAAATTCAGGACAGG | + |
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Preference number: 2 (lower is better) Translates to: VISLQEHTQHVHSLIPHNGTDEA*RQIQDR Trigger: CCTGTCCTGAATTTGTCTTCAGGCTTCATCGGTCCC...GTTGTGGGGTATGAGTGAGTGTACATGCTGTGTGTGTTCCTGAAGGGAAATCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027626.13 |
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| 3UTR-3UTR TCA 90 bp | CACACACAGCATGTACACTCACTCATACCCCACAACTGGCCCCACAACTGGACAGCTGAAACTGATTTGTaGCACCTACACACTAGCTTA | + |
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Preference number: 2 (lower is better) Translates to: HTQHVHSLIPHNWPHNWTAETDL*HLHTSL Trigger: TAAGCTAGTGTGTAGGTGTCACAAATCAGTTTCAGC...TGTCCAGTTGTGGGGCCAGTTGTGGGGTATGAGTGAGTGTACATGCTGTGTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027626.13 |
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| 3UTR-3UTR CCA 90 bp | ACCAGAGTCCTATGTCAGATGATTAAGGGGCAGAGGTCTAGAAGACAAGTGATTGCTCCTGGACACATGTaGAAATCTAAACCAGAACTG | + |
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Preference number: 2 (lower is better) Translates to: TRVLCQMIKGQRSRRQVIAPGHM*KSKPEL Trigger: CAGTTCTGGTTTAGATTTCCACATGTGTCCAGGAGC...AATCACTTGTCTTCTAGACCTCTGCCCCTTAATCATCTGACATAGGACTCTGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027626.13 |
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| 3UTR-3UTR TCA 90 bp | GAGTTCCAGGATAGTCAGGACAACATAGAGAAAAACTGTCTAACCAGAGTCCTATACAACAGGAGATGGTaGCATTTCTTACTTCCCCAC | + |
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Preference number: 2 (lower is better) Translates to: EFQDSQDNIEKNCLTRVLYNRRW*HFLLPH Trigger: GTGGGGAAGTAAGAAATGTCACCATCTCCTGTTGTA...TAGGACTCTGGTTAGACAGTTTTTCTCTATGTTGTCCTGACTATCCTGGAACTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027626.13 |
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| 3UTR-3UTR CCA 90 bp | AGAACTGCCCTCTCACTCTCTGGATTTCATTTCCAGTTTCAGATGTCTGAGGCTAGTGGCTTTCCTCACTaGAAAACCAAACATGTATTC | + |
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Preference number: 2 (lower is better) Translates to: RTALSLSGFHFQFQMSEASGFPH*KTKHVF Trigger: GAATACATGTTTGGTTTTCCAGTGAGGAAAGCCACT...AGCCTCAGACATCTGAAACTGGAAATGAAATCCAGAGAGTGAGAGGGCAGTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027626.13 |
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| 3UTR-3UTR GCA 90 bp | ATAGAGAAAAACTGTCTAACCAGAGTCCTATGTCAGATGATTAAGGGGCAGAGGAGTCTTGTCTGTGCTTaGAAGTCACTGCACTTAGTA | + |
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Preference number: 2 (lower is better) Translates to: IEKNCLTRVLCQMIKGQRSLVCA*KSLHLV Trigger: TACTAAGTGCAGTGACTTGCAAGCACAGACAAGACT...CCTCTGCCCCTTAATCATCTGACATAGGACTCTGGTTAGACAGTTTTTCTCTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027626.13 |
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| 3UTR-3UTR GCA 90 bp | GGACAAAAAGGAAGCTTAATCAAGGAGATTGACAGTTATATTCAAGAAACCCAACAACAGTCTTGTCTGTaGTTGCAAGTCACTGCACTT | + |
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Preference number: 2 (lower is better) Translates to: GQKGSLIKEIDSYIQETQQQSCL*LQVTAL Trigger: AAGTGCAGTGACTTGCAAGCACAGACAAGACTGTTG...TTGGGTTTCTTGAATATAACTGTCAATCTCCTTGATTAAGCTTCCTTTTTGTCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027626.13 |
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| 3UTR-3UTR CAA 90 bp | GTGATTTCCCTTCAGGAACACACACAGCATGTACACTCACTCATACCCCACAACCAGTCTTGTCTGTGCTaGCAAGTCACTGCACTTAGT | + |
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Preference number: 3 (lower is better) Translates to: VISLQEHTQHVHSLIPHNQSCLC*QVTALS Trigger: ACTAAGTGCAGTGACTTGCAAGCACAGACAAGACTG...GTTGTGGGGTATGAGTGAGTGTACATGCTGTGTGTGTTCCTGAAGGGAAATCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027626.13 |
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| 3UTR CCA 72 bp | AAAGGGCACAGTCAGGTTCCCAGTGGCTTTCCTCACTaGAAAACCAAACATGTATTCTTCCTCCAACAGTCT | + |
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Preference number: 3 (lower is better) Translates to: KGHSQVPSGFPH*KTKHVFFLQQS Trigger: AGACTGTTGGAGGAAGAATACATGTTTGGTTTTCCAGTGAGGAAAGCCACTGGGAACCTGACTGTGCCCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027626.13 |
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| 3UTR GCA 72 bp | CAGCTCCTGGACACATGTGGAAATCTAAACCAGAACTaGCCTCTCACTCTCTGGATTTCATTTCCAGTTTCA | + |
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Preference number: 3 (lower is better) Translates to: QLLDTCGNLNQN*PLTLWISFPVS Trigger: TGAAACTGGAAATGAAATCCAGAGAGTGAGAGGGCAGTTCTGGTTTAGATTTCCACATGTGTCCAGGAGCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027626.13 |
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| 3UTR TCA 72 bp | CTGAGTTTCATAAGGATAGTAAAACTGAGGGACCGATaGAGCCTGAAGACAAATTCAGGACAGGAAAGGGCA | + |
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Preference number: 3 (lower is better) Translates to: LSFIRIVKLRDR*SLKTNSGQERA Trigger: TGCCCTTTCCTGTCCTGAATTTGTCTTCAGGCTTCATCGGTCCCTCAGTTTTACTATCCTTATGAAACTCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027626.13 |
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| 3UTR GCA 72 bp | AACATGTATTCTTCCTCCAACAGTCTTGTCTGTGCTTaGAAGTCACTGCACTTAGTAAAATATAGTAGTCCC | + |
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Preference number: 3 (lower is better) Translates to: NMYSSSNSLVCA*KSLHLVKYSSP Trigger: GGGACTACTATATTTTACTAAGTGCAGTGACTTGCAAGCACAGACAAGACTGTTGGAGGAAGAATACATGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027626.13 |
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| CDS-3UTR GCA 90 bp | CTCCTGGACACATGTGGAAATCTAAACCAGAACTGCCCTCTCACTCTCTGGATTGTGCGCCCTTGGATCTaGGTCAGAGCCTTCTCAAAC | + |
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Preference number: 4 (lower is better) Translates to: LLDTCGNLNQNCPLTLWIVRPWI*VRAFSN Trigger: GTTTGAGAAGGCTCTGACGCAGATCCAAGGGCGCAC...AATCCAGAGAGTGAGAGGGCAGTTCTGGTTTAGATTTCCACATGTGTCCAGGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027626.13 |
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| CDS-3UTR CCA 90 bp | CCCTCTCACTCTCTGGATTTCATTTCCAGTTTCAGATGTCTGAGGCTGAAGCCTTGTGTCTTCTTTCACTaGGGGCACAGGCAGCTTGAG | + |
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Preference number: 4 (lower is better) Translates to: PSHSLDFISSFRCLRLKPCVFFH*GHRQLE Trigger: CTCAAGCTGCCTGTGCCCCCAGTGAAAGAAGACACA...AGGCTTCAGCCTCAGACATCTGAAACTGGAAATGAAATCCAGAGAGTGAGAGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027626.13 |
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| CDS-3UTR TCA 90 bp | CTCCTGGACACATGTGGAAATCTAAACCAGAACTGCCCTCTCACTCTCTGGATTTCTTTCTTCTTTTGCTaGGGCTTCTTCGTGCGCCCT | + |
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Preference number: 4 (lower is better) Translates to: LLDTCGNLNQNCPLTLWISFFFC*GFFVRP Trigger: AGGGCGCACGAAGAAGCCTCAGCAAAAGAAGAAAGA...AATCCAGAGAGTGAGAGGGCAGTTCTGGTTTAGATTTCCACATGTGTCCAGGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027626.13 |
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| CDS-3UTR GCA 90 bp | CTCCTGGACACATGTGGAAATCTAAACCAGAACTGCCCTCTCACTCTCTGGATTTCCATCTTCAACATCTaGAAATGTCCTCGTTTCCGA | + |
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Preference number: 4 (lower is better) Translates to: LLDTCGNLNQNCPLTLWISIFNI*KCPRFR Trigger: TCGGAAACGAGGACATTTGCAGATGTTGAAGATGGA...AATCCAGAGAGTGAGAGGGCAGTTCTGGTTTAGATTTCCACATGTGTCCAGGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027626.13 |
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| CDS-3UTR CCA 90 bp | GAGTTCCAGGATAGTCAGGACAACATAGAGAAAAACTGTCTAACCAGAGTCCTAAACAGAGCATTCCTCTaGCTGAAAAGGTCTTTATGG | + |
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Preference number: 4 (lower is better) Translates to: EFQDSQDNIEKNCLTRVLNRAFL*LKRSLW Trigger: CCATAAAGACCTTTTCAGCCAGAGGAATGCTCTGTT...TAGGACTCTGGTTAGACAGTTTTTCTCTATGTTGTCCTGACTATCCTGGAACTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027626.13 |
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| CDS GCA 90 bp | GGCTTCTTCGTGCGCCCTTGGATCTGCGTCAGAGCCTTCTCAAACTaGGAGTCTTCCTGCGGGTTCAATGCCAGACTCGGCTTCGCGGGG | + |
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Preference number: 5 (lower is better) Translates to: GFFVRPWICVRAFSN*ESSCGFNARLGFAG Trigger: CCCCGCGAAGCCGAGTCTGGCATTGAACCCGCAGGAAGACTCGCAGTTTGAGAAGGCTCTGACGCAGATCCAAGGGCGCACGAAGAAGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027626.13 |
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| CDS GCA 90 bp | GTCTTCTTCGTGCGCCCTTGGATCTGCGTCAGAGCCTTCTCAAACTaGGAGTCTTCCTGCGGGTTCAATGCCAGACTCGGCTTCGCGGGG | + |
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Preference number: 5 (lower is better) Translates to: VFFVRPWICVRAFSN*ESSCGFNARLGFAG Trigger: CCCCGCGAAGCCGAGTCTGGCATTGAACCCGCAGGAAGACTCGCAGTTTGAGAAGGCTCTGACGCAGATCCAAGGGCGCACGAAGAAGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112688.10 |
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| CDS-3UTR CAA 90 bp | ACCAGAGTCCTATGTCAGATGATTAAGGGGCAGAGGTCTAGAAGACAAGTGATTGGCTTTCAGAAAGTGTaGAAGGTAGGTGGCCCAGAT | + |
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Preference number: 5 (lower is better) Translates to: TRVLCQMIKGQRSRRQVIGFQKV*KVGGPD Trigger: ATCTGGGCCACCTACCTTCAACACTTTCTGAAAGCC...AATCACTTGTCTTCTAGACCTCTGCCCCTTAATCATCTGACATAGGACTCTGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027626.13 |
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| CDS-3UTR CAA 90 bp | GATAGTAAAACTGAGGGACCGATGAAGCCTGAAGACAAATTCAGGACAGGAAAGGGGGGCACAGGCAGCTaGAGAATGATTTCATCATCT | + |
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Preference number: 5 (lower is better) Translates to: DSKTEGPMKPEDKFRTGKGGTGS*RMISSS Trigger: AGATGATGAAATCATTCTCAAGCTGCCTGTGCCCCC...CTTTCCTGTCCTGAATTTGTCTTCAGGCTTCATCGGTCCCTCAGTTTTACTATC 47% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000027626.13 |
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| CDS-3UTR CAA 90 bp | GTGATTTCCCTTCAGGAACACACACAGCATGTACACTCACTCATACCCCACAACAGATGTTGGGGTCTTTaGTGTGTCTTCTTTCACTGG | + |
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Preference number: 5 (lower is better) Translates to: VISLQEHTQHVHSLIPHNRCWGL*CVFFHW Trigger: CCAGTGAAAGAAGACACACAAAAGACCCCAACATCT...GTTGTGGGGTATGAGTGAGTGTACATGCTGTGTGTGTTCCTGAAGGGAAATCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027626.13 |
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| CDS-3UTR CAA 90 bp | AAACCAAACATGTATTCTTCCTCCAACAGTCTTGTCTGTGCTTGCAAGTCACTGTATAATCAATCCCCTTaGCAGCTAGTTTCTTCCGGA | + |
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Preference number: 5 (lower is better) Translates to: KPNMYSSSNSLVCACKSLYNQSP*QLVSSG Trigger: TCCGGAAGAAACTAGCTGCAAAGGGGATTGATTATA...CAGTGACTTGCAAGCACAGACAAGACTGTTGGAGGAAGAATACATGTTTGGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027626.13 |
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| CDS GCA 72 bp | TTGCTGTTTCCAGTCTTCTTCGTGCGCCCTTGGATCTaGGTCAGAGCCTTCTCAAACTGCGAGTCTTCCTGC | + |
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Preference number: 6 (lower is better) Translates to: LLFPVFFVRPWI*VRAFSNCESSC Trigger: GCAGGAAGACTCGCAGTTTGAGAAGGCTCTGACGCAGATCCAAGGGCGCACGAAGAAGACTGGAAACAGCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112688.10 |
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| CDS CAA 72 bp | TTCTTTCTTCTTTTGCTGAGGCTTCTTCGTGCGCCCTaGGATCTGCGTCAGAGCCTTCTCAAACTGCGAGTC | + |
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Preference number: 6 (lower is better) Translates to: FFLLLLRLLRAP*DLRQSLLKLRV Trigger: GACTCGCAGTTTGAGAAGGCTCTGACGCAGATCCAAGGGCGCACGAAGAAGCCTCAGCAAAAGAAGAAAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027626.13 |
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| CDS CAA 90 bp | GTTAAGTTTTTCTTTCTTCTTTTGCTGAGGCTTCTTCGTGCGCCCTaGGATCTGCGTCAGAGCCTTCTCAAACTGCGAGTCTTCCTGCGG | + |
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Preference number: 6 (lower is better) Translates to: VKFFFLLLLRLLRAP*DLRQSLLKLRVFLR Trigger: CCGCAGGAAGACTCGCAGTTTGAGAAGGCTCTGACGCAGATCCAAGGGCGCACGAAGAAGCCTCAGCAAAAGAAGAAAGAAAAACTTAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027626.13 |
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