Pregenerated sensors for NICN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032606Ensembl transcript IDs: ENSMUST00000035227.8
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCCCAGGGCTCTCTCAGCACCCTGAGCATGACGGGCAGAAGCAACTaGGAGAAGGGACAGGGATCGTTGGATGTACTTCATGCTGAATCT | + |
|
Preference number: 1 (lower is better) Translates to: PQGSLSTLSMTGRSN*EKGQGSLDVLHAES Trigger: AGATTCAGCATGAAGTACATCCAACGATCCCTGTCCCTTCTCTCAGTTGCTTCTGCCCGTCATGCTCAGGGTGCTGAGAGAGCCCTGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| 3UTR GCA 90 bp | ATGACAAATAGTCCGAAGGGAGGACTCGTGCTCTGGCCCCAGCTGTaGCAACAGCACCTACCCAGAACTGACACAGAACACTTTTCAGGA | + |
|
Preference number: 1 (lower is better) Translates to: MTNSPKGGLVLWPQL*QQHLPRTDTEHFSG Trigger: TCCTGAAAAGTGTTCTGTGTCAGTTCTGGGTAGGTGCTGTTGGCACAGCTGGGGCCAGAGCACGAGTCCTCCCTTCGGACTATTTGTCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| 3UTR CCA 90 bp | ATGCTGAATCTGATGACAAATAGTCCGAAGGGAGGACTCGTGCTCTaGCCCCAGCTGTGCCAACAGCACCTACCCAGAACTGACACAGAA | + |
|
Preference number: 1 (lower is better) Translates to: MLNLMTNSPKGGLVL*PQLCQQHLPRTDTE Trigger: TTCTGTGTCAGTTCTGGGTAGGTGCTGTTGGCACAGCTGGGGCCAGAGCACGAGTCCTCCCTTCGGACTATTTGTCATCAGATTCAGCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| 3UTR TCA 90 bp | ACTCGTGCTCTGGCCCCAGCTGTGCCAACAGCACCTACCCAGAACTaGCACAGAACACTTTTCAGGAGCAATTGTAGGGACTTAAGCACT | + |
|
Preference number: 1 (lower is better) Translates to: TRALAPAVPTAPTQN*HRTLFRSNCRDLST Trigger: AGTGCTTAAGTCCCTACAATTGCTCCTGAAAAGTGTTCTGTGTCAGTTCTGGGTAGGTGCTGTTGGCACAGCTGGGGCCAGAGCACGAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| 3UTR TCA 90 bp | TTGCCGTACACTAGCTCCAGCTCTAGGAACTTAGGAACACAGCTGTaGATTATGCATAGCCCCTGCCACTTCAGGATCCTCTTTGCCCAA | + |
|
Preference number: 1 (lower is better) Translates to: LPYTSSSSRNLGTQL*IMHSPCHFRILFAQ Trigger: TTGGGCAAAGAGGATCCTGAAGTGGCAGGGGCTATGCATAATTCACAGCTGTGTTCCTAAGTTCCTAGAGCTGGAGCTAGTGTACGGCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| 3UTR CCA 90 bp | GGTATCAAGAATTCCCAATCTGCAGATTTTTGCCCAGATAGAACTTaGATGCACAGGGAACGGCCTCTGGTGGCCAAACCCCATCTAGAT | + |
|
Preference number: 1 (lower is better) Translates to: GIKNSQSADFCPDRT*MHRERPLVAKPHLD Trigger: ATCTAGATGGGGTTTGGCCACCAGAGGCCGTTCCCTGTGCATCCAAGTTCTATCTGGGCAAAAATCTGCAGATTGGGAATTCTTGATACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| 3UTR TCA 90 bp | ACAAGCAAGAGGAGCTCAAGGATTCTAATTAGAACCGGTGAATTCTaGGAGGAAGAGACTGAATTTACATGTCAGACAGTCAGAGACAGA | + |
|
Preference number: 1 (lower is better) Translates to: TSKRSSRILIRTGEF*EEETEFTCQTVRDR Trigger: TCTGTCTCTGACTGTCTGACATGTAAATTCAGTCTCTTCCTCTCAGAATTCACCGGTTCTAATTAGAATCCTTGAGCTCCTCTTGCTTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| 3UTR-3UTR CCA 90 bp | CGAAGGGAGGACTCGTGCTCTGGCCCCAGCTGTGCCAACAGCACCTACCCAGAACAAACCCCATCTAGATaGGCACAGAAAGCCAACATC | + |
|
Preference number: 2 (lower is better) Translates to: RREDSCSGPSCANSTYPEQTPSR*AQKANI Trigger: GATGTTGGCTTTCTGTGCCCATCTAGATGGGGTTTG...TTCTGGGTAGGTGCTGTTGGCACAGCTGGGGCCAGAGCACGAGTCCTCCCTTCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| 3UTR-3UTR CCA 90 bp | TCTGGCCCCAGCTGTGCCAACAGCACCTACCCAGAACTGACACAGAACACTTTTGGTTTATCTCAGCAATaGGGGGAAATGGTAGCAGAC | + |
|
Preference number: 2 (lower is better) Translates to: SGPSCANSTYPELTQNTFGLSQQ*GEMVAD Trigger: GTCTGCTACCATTTCCCCCCATTGCTGAGATAAACC...AAAAGTGTTCTGTGTCAGTTCTGGGTAGGTGCTGTTGGCACAGCTGGGGCCAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| 3UTR-3UTR TCA 90 bp | TATGATCCTGTAGGTGAAGACAGGACCTTCAAGAGGGCTGACTGCAGAGATGCAGCACCTACCCAGAACTaGCACAGAACACTTTTCAGG | + |
|
Preference number: 2 (lower is better) Translates to: YDPVGEDRTFKRADCRDAAPTQN*HRTLFR Trigger: CCTGAAAAGTGTTCTGTGTCAGTTCTGGGTAGGTGC...TGCATCTCTGCAGTCAGCCCTCTTGAAGGTCCTGTCTTCACCTACAGGATCATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| 3UTR-3UTR TCA 90 bp | TATGATCCTGTAGGTGAAGACAGGACCTTCAAGAGGGCTGACTGCAGAGATGCACTTCCTTGCTACAAGTaGCAGGTTTATCTCAGCAAT | + |
|
Preference number: 2 (lower is better) Translates to: YDPVGEDRTFKRADCRDALPCYK*QVYLSN Trigger: ATTGCTGAGATAAACCTGTCACTTGTAGCAAGGAAG...TGCATCTCTGCAGTCAGCCCTCTTGAAGGTCCTGTCTTCACCTACAGGATCATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| 3UTR-3UTR TCA 90 bp | ACTGTTGCATATACTCGTGTCCAATTTTCCAGATCTGAGACACCTTGCAGCACGGCAGAAGCAGAGGAATaGATAGAGGGTATGTCTTCC | + |
|
Preference number: 2 (lower is better) Translates to: TVAYTRVQFSRSETPCSTAEAEE*IEGMSS Trigger: GGAAGACATACCCTCTATTCATTCCTCTGCTTCTGC...CGTGCTGCAAGGTGTCTCAGATCTGGAAAATTGGACACGAGTATATGCAACAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| 3UTR-3UTR GCA 90 bp | AGACAGTCAGAGACAGAAGTGCCCCCACTAGGAATTCATGCTAAAACAACTGGACAATCTGCAGATTTTTaGCCAGATAGAACTTGGATG | + |
|
Preference number: 2 (lower is better) Translates to: RQSETEVPPLGIHAKTTGQSADF*PDRTWM Trigger: CATCCAAGTTCTATCTGGGCAAAAATCTGCAGATTG...TCCAGTTGTTTTAGCATGAATTCCTAGTGGGGGCACTTCTGTCTCTGACTGTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| 3UTR-3UTR GCA 90 bp | ATGGTAATTACCCTGTCAGTGGGGCTTAACTATGATCCTGTAGGTGAAGACAGGTTCCCAGAAAACTGTTaGATATACTCGTGTCCAATT | + |
|
Preference number: 2 (lower is better) Translates to: MVITLSVGLNYDPVGEDRFPENC*IYSCPI Trigger: AATTGGACACGAGTATATGCAACAGTTTTCTGGGAA...CCTGTCTTCACCTACAGGATCATAGTTAAGCCCCACTGACAGGGTAATTACCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| 3UTR-3UTR CCA 90 bp | ATGGTAATTACCCTGTCAGTGGGGCTTAACTATGATCCTGTAGGTGAAGACAGGGCTAAAACAACTGGATaGGTATCAAGAATTCCCAAT | + |
|
Preference number: 2 (lower is better) Translates to: MVITLSVGLNYDPVGEDRAKTTG*VSRIPN Trigger: ATTGGGAATTCTTGATACCCATCCAGTTGTTTTAGC...CCTGTCTTCACCTACAGGATCATAGTTAAGCCCCACTGACAGGGTAATTACCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| 3UTR TCA 72 bp | GGGGTAATGGAGGGCCTCAGCCTCAATGAGTGTCAGTaGGACGTTGGCTTGGACGCACTCCCCCAGGGCTCT | + |
|
Preference number: 3 (lower is better) Translates to: GVMEGLSLNECQ*DVGLDALPQGS Trigger: AGAGCCCTGGGGGAGTGCGTCCAAGCCAACGTCTCACTGACACTCATTGAGGCTGAGGCCCTCCATTACCCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| 3UTR GCA 72 bp | AGTCCGAAGGGAGGACTCGTGCTCTGGCCCCAGCTGTaGCAACAGCACCTACCCAGAACTGACACAGAACAC | + |
|
Preference number: 3 (lower is better) Translates to: SPKGGLVLWPQL*QQHLPRTDTEH Trigger: GTGTTCTGTGTCAGTTCTGGGTAGGTGCTGTTGGCACAGCTGGGGCCAGAGCACGAGTCCTCCCTTCGGACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| 3UTR CCA 72 bp | CTGATGACAAATAGTCCGAAGGGAGGACTCGTGCTCTaGCCCCAGCTGTGCCAACAGCACCTACCCAGAACT | + |
|
Preference number: 3 (lower is better) Translates to: LMTNSPKGGLVL*PQLCQQHLPRT Trigger: AGTTCTGGGTAGGTGCTGTTGGCACAGCTGGGGCCAGAGCACGAGTCCTCCCTTCGGACTATTTGTCATCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| 3UTR TCA 72 bp | CTGGCCCCAGCTGTGCCAACAGCACCTACCCAGAACTaGCACAGAACACTTTTCAGGAGCAATTGTAGGGAC | + |
|
Preference number: 3 (lower is better) Translates to: LAPAVPTAPTQN*HRTLFRSNCRD Trigger: GTCCCTACAATTGCTCCTGAAAAGTGTTCTGTGTCAGTTCTGGGTAGGTGCTGTTGGCACAGCTGGGGCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| 3UTR GCA 72 bp | CCCAATCTGCAGATTTTTGCCCAGATAGAACTTGGATaGACAGGGAACGGCCTCTGGTGGCCAAACCCCATC | + |
|
Preference number: 3 (lower is better) Translates to: PNLQIFAQIELG*TGNGLWWPNPI Trigger: GATGGGGTTTGGCCACCAGAGGCCGTTCCCTGTGCATCCAAGTTCTATCTGGGCAAAAATCTGCAGATTGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| 3UTR TCA 72 bp | TCTCTCAGCACCCTGAGCATGACGGGCAGAAGCAACTaGGAGAAGGGACAGGGATCGTTGGATGTACTTCAT | + |
|
Preference number: 3 (lower is better) Translates to: SLSTLSMTGRSN*EKGQGSLDVLH Trigger: ATGAAGTACATCCAACGATCCCTGTCCCTTCTCTCAGTTGCTTCTGCCCGTCATGCTCAGGGTGCTGAGAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| 3UTR CCA 72 bp | AATTCCCAATCTGCAGATTTTTGCCCAGATAGAACTTaGATGCACAGGGAACGGCCTCTGGTGGCCAAACCC | + |
|
Preference number: 3 (lower is better) Translates to: NSQSADFCPDRT*MHRERPLVAKP Trigger: GGGTTTGGCCACCAGAGGCCGTTCCCTGTGCATCCAAGTTCTATCTGGGCAAAAATCTGCAGATTGGGAATT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| 3UTR TCA 72 bp | ACTAGCTCCAGCTCTAGGAACTTAGGAACACAGCTGTaGATTATGCATAGCCCCTGCCACTTCAGGATCCTC | + |
|
Preference number: 3 (lower is better) Translates to: TSSSSRNLGTQL*IMHSPCHFRIL Trigger: GAGGATCCTGAAGTGGCAGGGGCTATGCATAATTCACAGCTGTGTTCCTAAGTTCCTAGAGCTGGAGCTAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| 3UTR CCA 72 bp | GCTTCCTTGCTACAAGTGACAGGTTTATCTCAGCAATaGGGGGAAATGGTAGCAGACTGGGGTGTTCGTGTT | + |
|
Preference number: 3 (lower is better) Translates to: ASLLQVTGLSQQ*GEMVADWGVRV Trigger: AACACGAACACCCCAGTCTGCTACCATTTCCCCCCATTGCTGAGATAAACCTGTCACTTGTAGCAAGGAAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| 3UTR GCA 72 bp | TGGATGGGTATCAAGAATTCCCAATCTGCAGATTTTTaGCCAGATAGAACTTGGATGCACAGGGAACGGCCT | + |
|
Preference number: 3 (lower is better) Translates to: WMGIKNSQSADF*PDRTWMHRERP Trigger: AGGCCGTTCCCTGTGCATCCAAGTTCTATCTGGGCAAAAATCTGCAGATTGGGAATTCTTGATACCCATCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| 3UTR-3UTR CAA 90 bp | TGGATACAATACAAAAGGACAAGGGCTACTAGCAGAAGCAGAGGAATGAATAGAACAACAGTGGCTTCCTaGCTACAAGTGACAGGTTTA | + |
|
Preference number: 3 (lower is better) Translates to: WIQYKRTRATSRSRGMNRTTVAS*LQVTGL Trigger: TAAACCTGTCACTTGTAGCAAGGAAGCCACTGTTGT...TCTATTCATTCCTCTGCTTCTGCTAGTAGCCCTTGTCCTTTTGTATTGTATCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| 3UTR TCA 72 bp | AGGAGCTCAAGGATTCTAATTAGAACCGGTGAATTCTaGGAGGAAGAGACTGAATTTACATGTCAGACAGTC | + |
|
Preference number: 3 (lower is better) Translates to: RSSRILIRTGEF*EEETEFTCQTV Trigger: GACTGTCTGACATGTAAATTCAGTCTCTTCCTCTCAGAATTCACCGGTTCTAATTAGAATCCTTGAGCTCCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| 3UTR CAA 72 bp | TGGAGGGCCTCAGCCTCAATGAGTGTCAGTGAGACGTaGGCTTGGACGCACTCCCCCAGGGCTCTCTCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: WRASASMSVSET*AWTHSPRALSA Trigger: TGCTGAGAGAGCCCTGGGGGAGTGCGTCCAAGCCAACGTCTCACTGACACTCATTGAGGCTGAGGCCCTCCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| CDS-3UTR TCA 90 bp | CCTGAGCATGACGGGCAGAAGCAACTGAGAGAAGGGACAGGGATCGTTGGATGTACGCCAGGCCGACCTTaGGAGGTCCTCATGTCGCCC | + |
|
Preference number: 4 (lower is better) Translates to: PEHDGQKQLREGTGIVGCTPGRP*EVLMSP Trigger: GGGCGACATGAGGACCTCTCAAGGTCGGCCTGGCGT...ACATCCAACGATCCCTGTCCCTTCTCTCAGTTGCTTCTGCCCGTCATGCTCAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| CDS-3UTR TCA 90 bp | CGAAGGGAGGACTCGTGCTCTGGCCCCAGCTGTGCCAACAGCACCTACCCAGAAACAGTGCTTTTCACATaGCAGGGCACCAACACACGG | + |
|
Preference number: 4 (lower is better) Translates to: RREDSCSGPSCANSTYPETVLFT*QGTNTR Trigger: CCGTGTGTTGGTGCCCTGTCATGTGAAAAGCACTGT...TTCTGGGTAGGTGCTGTTGGCACAGCTGGGGCCAGAGCACGAGTCCTCCCTTCG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| CDS-3UTR GCA 90 bp | TATGATCCTGTAGGTGAAGACAGGACCTTCAAGAGGGCTGACTGCAGAGATGCAAGGCGGGGAGCAGGCTaGTCATTGGACACTGGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: YDPVGEDRTFKRADCRDARRGAG*SLDTGW Trigger: CCACCCAGTGTCCAATGAGCAGCCTGCTCCCCGCCT...TGCATCTCTGCAGTCAGCCCTCTTGAAGGTCCTGTCTTCACCTACAGGATCATA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| CDS-3UTR GCA 90 bp | CTGATGACAAATAGTCCGAAGGGAGGACTCGTGCTCTGGCCCCAGCTGTGCCAACTTGCAGGGCTACAGTaGTTTTCACATGACAGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: LMTNSPKGGLVLWPQLCQLAGLQ*FSHDRA Trigger: TGCCCTGTCATGTGAAAAGCACTGTAGCCCTGCAAG...TTGGCACAGCTGGGGCCAGAGCACGAGTCCTCCCTTCGGACTATTTGTCATCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| CDS-3UTR CCA 90 bp | CTTGCAGCACGGCTTAATAATACTGCCCGGGGACGAAGCCAGGAAGGACTAGAGCAAGGAGGGGCTCTTTaGTCCCTGTTGGTAGATCTG | + |
|
Preference number: 4 (lower is better) Translates to: LAARLNNTARGRSQEGLEQGGAL*SLLVDL Trigger: CAGATCTACCAACAGGGACCAAAGAGCCCCTCCTTG...CTCTAGTCCTTCCTGGCTTCGTCCCCGGGCAGTATTATTAAGCCGTGCTGCAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| CDS-3UTR TCA 90 bp | CTTGCAGCACGGCTTAATAATACTGCCCGGGGACGAAGCCAGGAAGGACTAGAGACAGCATCTGGTGCTTaGACAGTGATACATAGTCCT | + |
|
Preference number: 4 (lower is better) Translates to: LAARLNNTARGRSQEGLETASGA*TVIHSP Trigger: AGGACTATGTATCACTGTTCAAGCACCAGATGCTGT...CTCTAGTCCTTCCTGGCTTCGTCCCCGGGCAGTATTATTAAGCCGTGCTGCAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| CDS-3UTR CCA 90 bp | TCTCAGCACCCTGAGCATGACGGGCAGAAGCAACTGAGAGAAGGGACAGGGATCATGTCACACAGCATCTaGTGCTTGAACAGTGATACA | + |
|
Preference number: 4 (lower is better) Translates to: SQHPEHDGQKQLREGTGIMSHSI*CLNSDT Trigger: TGTATCACTGTTCAAGCACCAGATGCTGTGTGACAT...GATCCCTGTCCCTTCTCTCAGTTGCTTCTGCCCGTCATGCTCAGGGTGCTGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| CDS-3UTR CCA 90 bp | GTGAATTCTGAGAGGAAGAGACTGAATTTACATGTCAGACAGTCAGAGACAGAACACTCTGCTGGGATCTaGGAGACCCTCAAGGCGGGG | + |
|
Preference number: 4 (lower is better) Translates to: VNSERKRLNLHVRQSETEHSAGI*ETLKAG Trigger: CCCCGCCTTGAGGGTCTCCCAGATCCCAGCAGAGTG...TTCTGTCTCTGACTGTCTGACATGTAAATTCAGTCTCTTCCTCTCAGAATTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| 3UTR CAA 72 bp | GAATTATGCATAGCCCCTGCCACTTCAGGATCCTCTTaGCCCAAGTGTACTGAGGACCATTGTTCCCTGAAC | + |
|
Preference number: 4 (lower is better) Translates to: ELCIAPATSGSS*PKCTEDHCSLN Trigger: GTTCAGGGAACAATGGTCCTCAGTACACTTGGGCAAAGAGGATCCTGAAGTGGCAGGGGCTATGCATAATTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| CDS-3UTR GCA 90 bp | TGGATACAATACAAAAGGACAAGGGCTACTAGCAGAAGCAGAGGAATGAATAGAGTTGACGAACACGGATaGTCAAGAAAGCTGTGTAGT | + |
|
Preference number: 4 (lower is better) Translates to: WIQYKRTRATSRSRGMNRVDEHG*SRKLCS Trigger: ACTACACAGCTTTCTTGAGCATCCGTGTTCGTCAAC...TCTATTCATTCCTCTGCTTCTGCTAGTAGCCCTTGTCCTTTTGTATTGTATCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| CDS-3UTR CAA 90 bp | GGAGTTTCACTATGTAGCCCTGATTGGCCTTGGGATTCAGTGTGTAGACCTGGCTCGAAAGGCGCGATGTaGGGAAAAGTGACATCGACG | + |
|
Preference number: 5 (lower is better) Translates to: GVSLCSPDWPWDSVCRPGSKGAM*GKVTST Trigger: CGTCGATGTCACTTTTCCCAACATCGCGCCTTTCGA...GCCAGGTCTACACACTGAATCCCAAGGCCAATCAGGGCTACATAGTGAAACTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| CDS CCA 90 bp | GTGGGTCAGGCATCAAACAGTAATCCCGAAGACAAGTTACCCACTTaGCTGCTGTGTGCATGGAGCTTTGTTGACGAACACGGATGCTCA | + |
|
Preference number: 5 (lower is better) Translates to: VGQASNSNPEDKLPT*LLCAWSFVDEHGCS Trigger: TGAGCATCCGTGTTCGTCAACAAAGCTCCATGCACACAGCAGCCAAGTGGGTAACTTGTCTTCGGGATTACTGTTTGATGCCTGACCCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| CDS-3UTR CAA 90 bp | AGACAGTCAGAGACAGAAGTGCCCCCACTAGGAATTCATGCTAAAACAACTGGACCTCATGTCGCCCACTaGCAGGGCTACAGTGCTTTT | + |
|
Preference number: 5 (lower is better) Translates to: RQSETEVPPLGIHAKTTGPHVAH*QGYSAF Trigger: AAAAGCACTGTAGCCCTGCAAGTGGGCGACATGAGG...TCCAGTTGTTTTAGCATGAATTCCTAGTGGGGGCACTTCTGTCTCTGACTGTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| CDS-3UTR CAA 90 bp | GAGAGAAGGGACAGGGATCGTTGGATGTACTTCATGCTGAATCTGATGACAAATCCAAGGAGGGGCTCTTaGGTCCCTGTTGGTAGATCT | + |
|
Preference number: 5 (lower is better) Translates to: ERRDRDRWMYFMLNLMTNPRRGS*VPVGRS Trigger: AGATCTACCAACAGGGACCAAAGAGCCCCTCCTTGG...ATTTGTCATCAGATTCAGCATGAAGTACATCCAACGATCCCTGTCCCTTCTCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| CDS CAA 72 bp | GCCAGGCCGACCTTGAGAGGTCCTCATGTCGCCCACTaGCAGGGCTACAGTGCTTTTCACATGACAGGGCAC | + |
|
Preference number: 6 (lower is better) Translates to: ARPTLRGPHVAH*QGYSAFHMTGH Trigger: GTGCCCTGTCATGTGAAAAGCACTGTAGCCCTGCAAGTGGGCGACATGAGGACCTCTCAAGGTCGGCCTGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| CDS TCA 72 bp | TCTCCTGCAACTCGAAAGGCGCGATGTTGGGAAAAGTaGCATCGACGACCAGCACGCCAGGCCGACCTTGAG | + |
|
Preference number: 6 (lower is better) Translates to: SPATRKARCWEK*HRRPARQADLE Trigger: CTCAAGGTCGGCCTGGCGTGCTGGTCGTCGATGTCACTTTTCCCAACATCGCGCCTTTCGAGTTGCAGGAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| CDS GCA 72 bp | GAGAGGTCCTCATGTCGCCCACTTGCAGGGCTACAGTaGTTTTCACATGACAGGGCACCAACACACGGGACA | + |
|
Preference number: 6 (lower is better) Translates to: ERSSCRPLAGLQ*FSHDRAPTHGT Trigger: TGTCCCGTGTGTTGGTGCCCTGTCATGTGAAAAGCACTGTAGCCCTGCAAGTGGGCGACATGAGGACCTCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||
| CDS CAA 72 bp | TTAAACATGATCTCCTGCAACTCGAAAGGCGCGATGTaGGGAAAAGTGACATCGACGACCAGCACGCCAGGC | + |
|
Preference number: 6 (lower is better) Translates to: LNMISCNSKGAM*GKVTSTTSTPG Trigger: GCCTGGCGTGCTGGTCGTCGATGTCACTTTTCCCAACATCGCGCCTTTCGAGTTGCAGGAGATCATGTTTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035227.8 |
||