RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NIBAN2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026796

Ensembl transcript IDs: ENSMUST00000028135.15, ENSMUST00000138781.2

Found 225 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGCCTGCGTCTGGGGAGCAGGTCCACAGAGCAAGGGACACAGGACTaGGAGGGACCTCGTCCTGGGGGCCTTGGAGCGGCAGTCTCTGCT +
Preference number: 1 (lower is better)
Translates to: GLRLGSRSTEQGTQD*EGPRPGGLGAAVSA
Trigger: AGCAGAGACTGCCGCTCCAAGGCCCCCAGGACGAGGTCCCTCCCAGTCCTGTGTCCCTTGCTCTGTGGACCTGCTCCCCAGACGCAGGCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR TCA 90 bp GCAGGGGACTGGGTGTCCCTGAGCACCGGCCACATCCTGTGGGTCTaGGGCCTGCGTCTGGGGAGCAGGTCCACAGAGCAAGGGACACAG +
Preference number: 1 (lower is better)
Translates to: AGDWVSLSTGHILWV*GLRLGSRSTEQGTQ
Trigger: CTGTGTCCCTTGCTCTGTGGACCTGCTCCCCAGACGCAGGCCTCAGACCCACAGGATGTGGCCGGTGCTCAGGGACACCCAGTCCCCTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR TCA 90 bp CCACCTTTCCCACAAGGCACAAACTGGAGTACCCCTCCCCAGAGGTaGGAGGCTGTGGTGCCCAAGGAGGAGCGCCCTGGTGCAGAGTCC +
Preference number: 1 (lower is better)
Translates to: PPFPQGTNWSTPPQR*EAVVPKEERPGAES
Trigger: GGACTCTGCACCAGGGCGCTCCTCCTTGGGCACCACAGCCTCTCACCTCTGGGGAGGGGTACTCCAGTTTGTGCCTTGTGGGAAAGGTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR CCA 90 bp CACAAGGCACAAACTGGAGTACCCCTCCCCAGAGGTGAGAGGCTGTaGTGCCCAAGGAGGAGCGCCCTGGTGCAGAGTCCAACAGAAGCC +
Preference number: 1 (lower is better)
Translates to: HKAQTGVPLPRGERL*CPRRSALVQSPTEA
Trigger: GGCTTCTGTTGGACTCTGCACCAGGGCGCTCCTCCTTGGGCACCACAGCCTCTCACCTCTGGGGAGGGGTACTCCAGTTTGTGCCTTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR CCA 90 bp AGAGCAAGGGACACAGGACTGGGAGGGACCTCGTCCTGGGGGCCTTaGAGCGGCAGTCTCTGCTTTGTTCTCCCAACTCTGGCGACAGAG +
Preference number: 1 (lower is better)
Translates to: RARDTGLGGTSSWGP*SGSLCFVLPTLATE
Trigger: CTCTGTCGCCAGAGTTGGGAGAACAAAGCAGAGACTGCCGCTCCAAGGCCCCCAGGACGAGGTCCCTCCCAGTCCTGTGTCCCTTGCTCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR CCA 90 bp GCTAGCAAAGTGAGGCCAGTGTCTAACCTTGGGACCTGCAGGGAGTaGGCGGGACAGAGGCCTGGTCTGCCTTTTCCTTGCCACGTTGGT +
Preference number: 1 (lower is better)
Translates to: ASKVRPVSNLGTCRE*AGQRPGLPFPCHVG
Trigger: ACCAACGTGGCAAGGAAAAGGCAGACCAGGCCTCTGTCCCGCCCACTCCCTGCAGGTCCCAAGGTTAGACACTGGCCTCACTTTGCTAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR CCA 90 bp GTCACCCAAGACACTCCAACTTCAGCTACCTTCACTTTGCCATCCTaGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGACACTTCCCC +
Preference number: 1 (lower is better)
Translates to: VTQDTPTSATFTLPS*QRHSQAPSPSGHFP
Trigger: GGGGAAGTGTCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCAAAGTGAAGGTAGCTGAAGTTGGAGTGTCTTGGGTGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR-3UTR CCA 90 bp AGGGACACAGGACTGGGAGGGACCTCGTCCTGGGGGCCTTGGAGCGGCAGTCTCGCCCCACCAGCTTCCTaGCACGTAGTGAAACAGCCC +
Preference number: 2 (lower is better)
Translates to: RDTGLGGTSSWGPWSGSLAPPAS*HVVKQP
Trigger: GGGCTGTTTCACTACGTGCCAGGAAGCTGGTGGGGC...GAGACTGCCGCTCCAAGGCCCCCAGGACGAGGTCCCTCCCAGTCCTGTGTCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR CAA 90 bp CAGAGCAAGGGACACAGGACTGGGAGGGACCTCGTCCTGGGGGCCTaGGAGCGGCAGTCTCTGCTTTGTTCTCCCAACTCTGGCGACAGA +
Preference number: 2 (lower is better)
Translates to: QSKGHRTGRDLVLGA*ERQSLLCSPNSGDR
Trigger: TCTGTCGCCAGAGTTGGGAGAACAAAGCAGAGACTGCCGCTCCAAGGCCCCCAGGACGAGGTCCCTCCCAGTCCTGTGTCCCTTGCTCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR-3UTR TCA 90 bp AGACCCCTGGAGATGCCACACCACCCCAGCCACCTTTCCCACAAGGCACAAACTACCCCTCCCCAGAGGTaGGAGGCTGTGGTGCCCAAG +
Preference number: 2 (lower is better)
Translates to: RPLEMPHHPSHLSHKAQTTPPQR*EAVVPK
Trigger: CTTGGGCACCACAGCCTCTCACCTCTGGGGAGGGGT...AGTTTGTGCCTTGTGGGAAAGGTGGCTGGGGTGGTGTGGCATCTCCAGGGGTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR-3UTR CCA 90 bp AGGGACACAGGACTGGGAGGGACCTCGTCCTGGGGGCCTTGGAGCGGCAGTCTCTTGTTCTCCCAACTCTaGCGACAGAGTCTGGGGAGA +
Preference number: 2 (lower is better)
Translates to: RDTGLGGTSSWGPWSGSLLFSQL*RQSLGR
Trigger: TCTCCCCAGACTCTGTCGCCAGAGTTGGGAGAACAA...GAGACTGCCGCTCCAAGGCCCCCAGGACGAGGTCCCTCCCAGTCCTGTGTCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR-3UTR GCA 90 bp ACTAGAGAACATGGAAAGAAGTCAGTACTCGGAGTGAGGGCAGGGGACTGGGTGCCAGACCCCTGGAGATaGCACACCACCCCAGCCACC +
Preference number: 2 (lower is better)
Translates to: TREHGKKSVLGVRAGDWVPDPWR*HTTPAT
Trigger: GGTGGCTGGGGTGGTGTGGCATCTCCAGGGGTCTGG...CACCCAGTCCCCTGCCCTCACTCCGAGTACTGACTTCTTTCCATGTTCTCTAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR-3UTR CCA 90 bp CTTTGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGACACTTCCCCACAAGGCACAAACTaGAGTACCCCTCCCCAGAGG +
Preference number: 2 (lower is better)
Translates to: LCHPGKDTPKLPPPQDTSPQGTN*STPPQR
Trigger: CCTCTGGGGAGGGGTACTCCAGTTTGTGCCTTGTGG...GGAAGTGTCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCAAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR-3UTR CCA 90 bp ACTAGAGAACATGGAAAGAAGTCAGTACTCGGAGTGAGGGCAGGGGACTGGGTGAGAGGTGAGAGGCTGTaGTGCCCAAGGAGGAGCGCC +
Preference number: 2 (lower is better)
Translates to: TREHGKKSVLGVRAGDWVRGERL*CPRRSA
Trigger: GGCGCTCCTCCTTGGGCACCACAGCCTCTCACCTCT...CACCCAGTCCCCTGCCCTCACTCCGAGTACTGACTTCTTTCCATGTTCTCTAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR CAA 90 bp CAGGAACGGGTCACCCAAGACACTCCAACTTCAGCTACCTTCACTTaGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGA +
Preference number: 2 (lower is better)
Translates to: QERVTQDTPTSATFT*PSWQRHSQAPSPSG
Trigger: TCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCAAAGTGAAGGTAGCTGAAGTTGGAGTGTCTTGGGTGACCCGTTCCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR-3UTR TCA 90 bp TTTGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGACACTTCCCTTCCATCATGACCTCTaGCCTCTAGCATCACTCCCC +
Preference number: 2 (lower is better)
Translates to: FAILAKTLPSSLPLRTLPFHHDL*PLASLP
Trigger: GGGGAGTGATGCTAGAGGTCAGAGGTCATGATGGAA...GGGAAGTGTCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR-3UTR TCA 90 bp ACTAGAGAACATGGAAAGAAGTCAGTACTCGGAGTGAGGGCAGGGGACTGGGTGCGGGAGCAGAGGCCATaGATGGTCAGCAGTGTCTCA +
Preference number: 2 (lower is better)
Translates to: TREHGKKSVLGVRAGDWVREQRP*MVSSVS
Trigger: TGAGACACTGCTGACCATTCATGGCCTCTGCTCCCG...CACCCAGTCCCCTGCCCTCACTCCGAGTACTGACTTCTTTCCATGTTCTCTAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR-3UTR CCA 90 bp ACTAGAGAACATGGAAAGAAGTCAGTACTCGGAGTGAGGGCAGGGGACTGGGTGCCCCATAAAGTGACTTaGGTAGGCCAGACCCCTGGA +
Preference number: 2 (lower is better)
Translates to: TREHGKKSVLGVRAGDWVPHKVT*VGQTPG
Trigger: TCCAGGGGTCTGGCCTACCCAAGTCACTTTATGGGG...CACCCAGTCCCCTGCCCTCACTCCGAGTACTGACTTCTTTCCATGTTCTCTAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR-3UTR CCA 90 bp TGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGACACTTCCCCTCAGACTAACACATTCTaGGCCTTTCTCATTCCATCA +
Preference number: 2 (lower is better)
Translates to: CHPGKDTPKLPPPQDTSPQTNTF*AFLIPS
Trigger: TGATGGAATGAGAAAGGCCCAGAATGTGTTAGTCTG...AGGGGAAGTGTCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR-3UTR GCA 90 bp GTTTGCATAGATTCTTCATACCATATCTGGAAGGATGGTGGAAACCCCCAAGGCTCTAACCTTGGGACCTaGAGGGAGTGGGCGGGACAG +
Preference number: 2 (lower is better)
Translates to: VCIDSSYHIWKDGGNPQGSNLGT*REWAGQ
Trigger: CTGTCCCGCCCACTCCCTGCAGGTCCCAAGGTTAGA...GCCTTGGGGGTTTCCACCATCCTTCCAGATATGGTATGAAGAATCTATGCAAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR-3UTR CCA 90 bp ACTAGAGAACATGGAAAGAAGTCAGTACTCGGAGTGAGGGCAGGGGACTGGGTGAGCAGAGGCCATGAATaGTCAGCAGTGTCTCAGAGA +
Preference number: 2 (lower is better)
Translates to: TREHGKKSVLGVRAGDWVSRGHE*SAVSQR
Trigger: TCTCTGAGACACTGCTGACCATTCATGGCCTCTGCT...CACCCAGTCCCCTGCCCTCACTCCGAGTACTGACTTCTTTCCATGTTCTCTAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR CCA 72 bp CTGGGGAGCAGGTCCACAGAGCAAGGGACACAGGACTaGGAGGGACCTCGTCCTGGGGGCCTTGGAGCGGCA +
Preference number: 3 (lower is better)
Translates to: LGSRSTEQGTQD*EGPRPGGLGAA
Trigger: TGCCGCTCCAAGGCCCCCAGGACGAGGTCCCTCCCAGTCCTGTGTCCCTTGCTCTGTGGACCTGCTCCCCAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR GCA 72 bp GGACCTGCAGGGAGTGGGCGGGACAGAGGCCTGGTCTaGCTTTTCCTTGCCACGTTGGTCCCAAGGAGCCCC +
Preference number: 3 (lower is better)
Translates to: GPAGSGRDRGLV*LFLATLVPRSP
Trigger: GGGGCTCCTTGGGACCAACGTGGCAAGGAAAAGGCAGACCAGGCCTCTGTCCCGCCCACTCCCTGCAGGTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR CCA 72 bp GCACCGGCCACATCCTGTGGGTCTGAGGCCTGCGTCTaGGGAGCAGGTCCACAGAGCAAGGGACACAGGACT +
Preference number: 3 (lower is better)
Translates to: APATSCGSEACV*GAGPQSKGHRT
Trigger: AGTCCTGTGTCCCTTGCTCTGTGGACCTGCTCCCCAGACGCAGGCCTCAGACCCACAGGATGTGGCCGGTGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR TCA 72 bp CCACAAGGCACAAACTGGAGTACCCCTCCCCAGAGGTaGGAGGCTGTGGTGCCCAAGGAGGAGCGCCCTGGT +
Preference number: 3 (lower is better)
Translates to: PQGTNWSTPPQR*EAVVPKEERPG
Trigger: ACCAGGGCGCTCCTCCTTGGGCACCACAGCCTCTCACCTCTGGGGAGGGGTACTCCAGTTTGTGCCTTGTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR GCA 72 bp GGGACCTCGTCCTGGGGGCCTTGGAGCGGCAGTCTCTaGTTTGTTCTCCCAACTCTGGCGACAGAGTCTGGG +
Preference number: 3 (lower is better)
Translates to: GTSSWGPWSGSL*FVLPTLATESG
Trigger: CCCAGACTCTGTCGCCAGAGTTGGGAGAACAAAGCAGAGACTGCCGCTCCAAGGCCCCCAGGACGAGGTCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR CCA 72 bp CAAACTGGAGTACCCCTCCCCAGAGGTGAGAGGCTGTaGTGCCCAAGGAGGAGCGCCCTGGTGCAGAGTCCA +
Preference number: 3 (lower is better)
Translates to: QTGVPLPRGERL*CPRRSALVQSP
Trigger: TGGACTCTGCACCAGGGCGCTCCTCCTTGGGCACCACAGCCTCTCACCTCTGGGGAGGGGTACTCCAGTTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR GCA 72 bp GAGTGGGCGGGACAGAGGCCTGGTCTGCCTTTTCCTTaGCACGTTGGTCCCAAGGAGCCCCAGAGTGAGATG +
Preference number: 3 (lower is better)
Translates to: EWAGQRPGLPFP*HVGPKEPQSEM
Trigger: CATCTCACTCTGGGGCTCCTTGGGACCAACGTGGCAAGGAAAAGGCAGACCAGGCCTCTGTCCCGCCCACTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR GCA 72 bp GCTAGCAAAGTGAGGCCAGTGTCTAACCTTGGGACCTaGAGGGAGTGGGCGGGACAGAGGCCTGGTCTGCCT +
Preference number: 3 (lower is better)
Translates to: ASKVRPVSNLGT*REWAGQRPGLP
Trigger: AGGCAGACCAGGCCTCTGTCCCGCCCACTCCCTGCAGGTCCCAAGGTTAGACACTGGCCTCACTTTGCTAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR CCA 72 bp GACACAGGACTGGGAGGGACCTCGTCCTGGGGGCCTTaGAGCGGCAGTCTCTGCTTTGTTCTCCCAACTCTG +
Preference number: 3 (lower is better)
Translates to: DTGLGGTSSWGP*SGSLCFVLPTL
Trigger: CAGAGTTGGGAGAACAAAGCAGAGACTGCCGCTCCAAGGCCCCCAGGACGAGGTCCCTCCCAGTCCTGTGTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR-3UTR CAA 90 bp TGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGACACTTCCCCTGGGCTCCCCAGACCCTaGCACAAAGAGGAAACCCTC +
Preference number: 3 (lower is better)
Translates to: CHPGKDTPKLPPPQDTSPGLPRP*HKEETL
Trigger: GAGGGTTTCCTCTTTGTGCAAGGGTCTGGGGAGCCC...AGGGGAAGTGTCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR CCA 72 bp AGCCCTCAATGTCCCTCTGGAGCCCCACCAGCTTCCTaGCACGTAGTGAAACAGCCCACAGCTAAGCCCTGC +
Preference number: 3 (lower is better)
Translates to: SPQCPSGAPPAS*HVVKQPTAKPC
Trigger: GCAGGGCTTAGCTGTGGGCTGTTTCACTACGTGCCAGGAAGCTGGTGGGGCTCCAGAGGGACATTGAGGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR CCA 72 bp GGCAGTAACAGGTGTACTGAACCCCATAAAGTGACTTaGGTAGGCCAGACCCCTGGAGATGCCACACCACCC +
Preference number: 3 (lower is better)
Translates to: GSNRCTEPHKVT*VGQTPGDATPP
Trigger: GGGTGGTGTGGCATCTCCAGGGGTCTGGCCTACCCAAGTCACTTTATGGGGTTCAGTACACCTGTTACTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR-3UTR CAA 90 bp CAAGGCACTAGAGAACATGGAAAGAAGTCAGTACTCGGAGTGAGGGCAGGGGACTGGTCTGCCTTTTCCTaGCCACGTTGGTCCCAAGGA +
Preference number: 3 (lower is better)
Translates to: QGTREHGKKSVLGVRAGDWSAFS*PRWSQG
Trigger: TCCTTGGGACCAACGTGGCAAGGAAAAGGCAGACCA...GTCCCCTGCCCTCACTCCGAGTACTGACTTCTTTCCATGTTCTCTAGTGCCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR-3UTR CAA 90 bp GTTTGCATAGATTCTTCATACCATATCTGGAAGGATGGTGGAAACCCCCAAGGCGGCCAGTGTCTAACCTaGGGACCTGCAGGGAGTGGG +
Preference number: 3 (lower is better)
Translates to: VCIDSSYHIWKDGGNPQGGQCLT*GPAGSG
Trigger: CCCACTCCCTGCAGGTCCCAAGGTTAGACACTGGCC...GCCTTGGGGGTTTCCACCATCCTTCCAGATATGGTATGAAGAATCTATGCAAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR CCA 72 bp TTATCAGGATTAGGTGACGGGAGCAGAGGCCATGAATaGTCAGCAGTGTCTCAGAGAGCCATAGCCCTCAAT +
Preference number: 3 (lower is better)
Translates to: LSGLGDGSRGHE*SAVSQRAIALN
Trigger: ATTGAGGGCTATGGCTCTCTGAGACACTGCTGACCATTCATGGCCTCTGCTCCCGTCACCTAATCCTGATAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR TCA 72 bp ACACATTCTGGGCCTTTCTCATTCCATCATGACCTCTaGCCTCTAGCATCACTCCCCTGTAAGACCCCTAAG +
Preference number: 3 (lower is better)
Translates to: THSGPFSFHHDL*PLASLPCKTPK
Trigger: CTTAGGGGTCTTACAGGGGAGTGATGCTAGAGGTCAGAGGTCATGATGGAATGAGAAAGGCCCAGAATGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp GGCCAGACCCCTGGAGATGCCACACCACCCCAGCCACCTTTCCCACAAGGCACAGTCGGTGCGGATGACTaGCTCCATGGCCGGCCGGGC +
Preference number: 4 (lower is better)
Translates to: GQTPGDATPPQPPFPQGTVGADD*LHGRPG
Trigger: GCCCGGCCGGCCATGGAGGCAGTCATCCGCACCGAC...TGTGCCTTGTGGGAAAGGTGGCTGGGGTGGTGTGGCATCTCCAGGGGTCTGGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp AGGGACACAGGACTGGGAGGGACCTCGTCCTGGGGGCCTTGGAGCGGCAGTCTCGACACGTCGAATCGCTaGTGCAGCCCGTCGAGCCGC +
Preference number: 4 (lower is better)
Translates to: RDTGLGGTSSWGPWSGSLDTSNR*CSPSSR
Trigger: GCGGCTCGACGGGCTGCAGCAGCGATTCGACGTGTC...GAGACTGCCGCTCCAAGGCCCCCAGGACGAGGTCCCTCCCAGTCCTGTGTCCCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp GGCCAGACCCCTGGAGATGCCACACCACCCCAGCCACCTTTCCCACAAGGCACACCTGCGGTGGCCCGGTaGCCTCGATCTCATGGCGCA +
Preference number: 4 (lower is better)
Translates to: GQTPGDATPPQPPFPQGTPAVAR*PRSHGA
Trigger: TGCGCCATGAGATCGAGGGCACCGGGCCACCGCAGG...TGTGCCTTGTGGGAAAGGTGGCTGGGGTGGTGTGGCATCTCCAGGGGTCTGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR TCA 90 bp AGGGACACAGGACTGGGAGGGACCTCGTCCTGGGGGCCTTGGAGCGGCAGTCTCGCCTGCGCTTTTCTGTaGGGGTGGCTGCTTCAGAGG +
Preference number: 4 (lower is better)
Translates to: RDTGLGGTSSWGPWSGSLACAFL*GWLLQR
Trigger: CCTCTGAAGCAGCCACCCTCACAGAAAAGCGCAGGC...GAGACTGCCGCTCCAAGGCCCCCAGGACGAGGTCCCTCCCAGTCCTGTGTCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp TGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGACACTTCCCCTCAGAGCAGCTGTGCCTaGGGTGGCCCGGTGCCCTCG +
Preference number: 4 (lower is better)
Translates to: CHPGKDTPKLPPPQDTSPQSSCA*GGPVPS
Trigger: CGAGGGCACCGGGCCACCGCAGGCACAGCTGCTCTG...AGGGGAAGTGTCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp AGGGACACAGGACTGGGAGGGACCTCGTCCTGGGGGCCTTGGAGCGGCAGTCTCCCGGGGCTAGACACCTaGTCTCCGGTCTCTTGGTCA +
Preference number: 4 (lower is better)
Translates to: RDTGLGGTSSWGPWSGSLPGLDT*SPVSWS
Trigger: TGACCAAGAGACCGGAGAGCAGGTGTCTAGCCCCGG...GAGACTGCCGCTCCAAGGCCCCCAGGACGAGGTCCCTCCCAGTCCTGTGTCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR TCA 90 bp AGGGACACAGGACTGGGAGGGACCTCGTCCTGGGGGCCTTGGAGCGGCAGTCTCGCAGGATGTCCTTCATaGCCGTCTGCAGCACCACCT +
Preference number: 4 (lower is better)
Translates to: RDTGLGGTSSWGPWSGSLAGCPS*PSAAPP
Trigger: AGGTGGTGCTGCAGACGGTCATGAAGGACATCCTGC...GAGACTGCCGCTCCAAGGCCCCCAGGACGAGGTCCCTCCCAGTCCTGTGTCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CCA 90 bp AGGGACACAGGACTGGGAGGGACCTCGTCCTGGGGGCCTTGGAGCGGCAGTCTCCCCTTCCCCAGCTCTTaGTGCAGGAGGGTTTCGAAG +
Preference number: 4 (lower is better)
Translates to: RDTGLGGTSSWGPWSGSLPFPSS*CRRVSK
Trigger: CTTCGAAACCCTCCTGCACCAAGAGCTGGGGAAGGG...GAGACTGCCGCTCCAAGGCCCCCAGGACGAGGTCCCTCCCAGTCCTGTGTCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR TCA 90 bp CTTTGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGACACTTCCCATCCCGCACCTCGGTaGAGCCCTGGCTGGTGGGCA +
Preference number: 4 (lower is better)
Translates to: LCHPGKDTPKLPPPQDTSHPAPR*SPGWWA
Trigger: TGCCCACCAGCCAGGGCTTCACCGAGGTGCGGGATG...GGAAGTGTCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCAAAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp TTTGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGACACTTCCCCCGTGGGCCAAGCTCTaGCTTCAGCGCTGGGCCCAG +
Preference number: 4 (lower is better)
Translates to: FAILAKTLPSSLPLRTLPPWAKL*LQRWAQ
Trigger: CTGGGCCCAGCGCTGAAGGCAGAGCTTGGCCCACGG...GGGAAGTGTCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCAAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CCA 90 bp AGGGACACAGGACTGGGAGGGACCTCGTCCTGGGGGCCTTGGAGCGGCAGTCTCTCTCGCATGTGGATCTaGGCTCGCTGCTTGAACACG +
Preference number: 4 (lower is better)
Translates to: RDTGLGGTSSWGPWSGSLSRMWI*ARCLNT
Trigger: CGTGTTCAAGCAGCGAGCCCAGATCCACATGCGAGA...GAGACTGCCGCTCCAAGGCCCCCAGGACGAGGTCCCTCCCAGTCCTGTGTCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR TCA 90 bp TGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGACACTTCCCCTTGCGGATGGCGTCTGTaGATGCAGGGCCCTCCACCT +
Preference number: 4 (lower is better)
Translates to: CHPGKDTPKLPPPQDTSPCGWRL*MQGPPP
Trigger: AGGTGGAGGGCCCTGCATTCACAGACGCCATCCGCA...AGGGGAAGTGTCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR CAA 72 bp GGACACAGGACTGGGAGGGACCTCGTCCTGGGGGCCTaGGAGCGGCAGTCTCTGCTTTGTTCTCCCAACTCT +
Preference number: 4 (lower is better)
Translates to: GHRTGRDLVLGA*ERQSLLCSPNS
Trigger: AGAGTTGGGAGAACAAAGCAGAGACTGCCGCTCCAAGGCCCCCAGGACGAGGTCCCTCCCAGTCCTGTGTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR TCA 90 bp AGGGACACAGGACTGGGAGGGACCTCGTCCTGGGGGCCTTGGAGCGGCAGTCTCCATGGCGCATGCTATTaGAGAGGGAGACACCATACT +
Preference number: 4 (lower is better)
Translates to: RDTGLGGTSSWGPWSGSLHGACY*RGRHHT
Trigger: AGTATGGTGTCTCCCTCTTCAATAGCATGCGCCATG...GAGACTGCCGCTCCAAGGCCCCCAGGACGAGGTCCCTCCCAGTCCTGTGTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR TCA 90 bp CTTTGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGACACTTCCGGACTGGAGCCCCATTaGGAAGAGGGCTGGCTGGTG +
Preference number: 4 (lower is better)
Translates to: LCHPGKDTPKLPPPQDTSGLEPH*EEGWLV
Trigger: CACCAGCCAGCCCTCTTCTCAATGGGGCTCCAGTCC...GGAAGTGTCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCAAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp AGTAACAGGTGTACTGAACCCCATAAAGTGACTTGGGTAGGCCAGACCCCTGGAGCGCCAGAGCAGCTGTaGCTGCGGTGGCCCGGTGCC +
Preference number: 4 (lower is better)
Translates to: SNRCTEPHKVTWVGQTPGAPEQL*LRWPGA
Trigger: GGCACCGGGCCACCGCAGGCACAGCTGCTCTGGCGC...TCCAGGGGTCTGGCCTACCCAAGTCACTTTATGGGGTTCAGTACACCTGTTACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CCA 90 bp AGGGACACAGGACTGGGAGGGACCTCGTCCTGGGGGCCTTGGAGCGGCAGTCTCCTAGAATCCGCTGGATaGATTTGCACAGCTCCTCCT +
Preference number: 4 (lower is better)
Translates to: RDTGLGGTSSWGPWSGSLLESAG*ICTAPP
Trigger: AGGAGGAGCTGTGCAAATCCATCCAGCGGATTCTAG...GAGACTGCCGCTCCAAGGCCCCCAGGACGAGGTCCCTCCCAGTCCTGTGTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CCA 90 bp TGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGACACTTCCCCTTTCGCCCCAGTCGATTaGTGTGCCCTCAGCCAGCAG +
Preference number: 4 (lower is better)
Translates to: CHPGKDTPKLPPPQDTSPFAPVD*CALSQQ
Trigger: CTGCTGGCTGAGGGCACACCAATCGACTGGGGCGAA...AGGGGAAGTGTCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp GGCCAGACCCCTGGAGATGCCACACCACCCCAGCCACCTTTCCCACAAGGCACATGGATCTGGGCTCGCTaGTTGAACACGGAAGTGCTA +
Preference number: 4 (lower is better)
Translates to: GQTPGDATPPQPPFPQGTWIWAR*LNTEVL
Trigger: TAGCACTTCCGTGTTCAAGCAGCGAGCCCAGATCCA...TGTGCCTTGTGGGAAAGGTGGCTGGGGTGGTGTGGCATCTCCAGGGGTCTGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp CTTTGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGACACTTCCGTGTTTGCGCTGCACTaGGGCCTCCTTCACAGCCTG +
Preference number: 4 (lower is better)
Translates to: LCHPGKDTPKLPPPQDTSVFALH*GLLHSL
Trigger: CAGGCTGTGAAGGAGGCCGCAGTGCAGCGCAAACAC...GGAAGTGTCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCAAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CCA 90 bp CTTTGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGACACTTCCTTCTCTGCGATGTGCTaGCGCCGTGCGTCATCCAGG +
Preference number: 4 (lower is better)
Translates to: LCHPGKDTPKLPPPQDTSFSAMC*RRASSR
Trigger: CCTGGATGACGCACGGCGCCAGCACATCGCAGAGAA...GGAAGTGTCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCAAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp AGACCCCTGGAGATGCCACACCACCCCAGCCACCTTTCCCACAAGGCACAAACTCTTCTCGGTTTTCTCTaGGATGTGCTGGCGCCGTGC +
Preference number: 4 (lower is better)
Translates to: RPLEMPHHPSHLSHKAQTLLGFL*DVLAPC
Trigger: GCACGGCGCCAGCACATCGCAGAGAAAACCGAGAAG...AGTTTGTGCCTTGTGGGAAAGGTGGCTGGGGTGGTGTGGCATCTCCAGGGGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp TGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGACACTTCCCCTGCCTCCTTCACAGCCTaGAGGATGTCCTTCATGACC +
Preference number: 4 (lower is better)
Translates to: CHPGKDTPKLPPPQDTSPASFTA*RMSFMT
Trigger: GGTCATGAAGGACATCCTGCAGGCTGTGAAGGAGGC...AGGGGAAGTGTCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp AGACCCCTGGAGATGCCACACCACCCCAGCCACCTTTCCCACAAGGCACAAACTGGTAGAGGTTGTGTTTaGGCTGCACTGCGGCCTCCT +
Preference number: 4 (lower is better)
Translates to: RPLEMPHHPSHLSHKAQTGRGCV*AALRPP
Trigger: AGGAGGCCGCAGTGCAGCGCAAACACAACCTCTACC...AGTTTGTGCCTTGTGGGAAAGGTGGCTGGGGTGGTGTGGCATCTCCAGGGGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp AGGGACACAGGACTGGGAGGGACCTCGTCCTGGGGGCCTTGGAGCGGCAGTCTCTATTGTGCAGAACCATaGTGTCACGGTAGAGGTTGT +
Preference number: 4 (lower is better)
Translates to: RDTGLGGTSSWGPWSGSLYCAEP*CHGRGC
Trigger: ACAACCTCTACCGTGACAGCATGGTTCTGCACAATA...GAGACTGCCGCTCCAAGGCCCCCAGGACGAGGTCCCTCCCAGTCCTGTGTCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CCA 90 bp TGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGACACTTCCCCTTACTGCTCCTTTGACTaGCGGTACATGCGGATGGCG +
Preference number: 4 (lower is better)
Translates to: CHPGKDTPKLPPPQDTSPYCSFD*RYMRMA
Trigger: CGCCATCCGCATGTACCGCCAGTCAAAGGAGCAGTA...AGGGGAAGTGTCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CCA 90 bp TGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGACACTTCCCCTAGCCTCCAAGATGGATaGGATGTAGGGCTGGACGTG +
Preference number: 4 (lower is better)
Translates to: CHPGKDTPKLPPPQDTSPSLQDG*DVGLDV
Trigger: CACGTCCAGCCCTACATCCCATCCATCTTGGAGGCT...AGGGGAAGTGTCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR TCA 90 bp GGCCAGACCCCTGGAGATGCCACACCACCCCAGCCACCTTTCCCACAAGGCACAAGCGAAGGAACTCTGTaGGGATCTTCTCGGTTTTCT +
Preference number: 4 (lower is better)
Translates to: GQTPGDATPPQPPFPQGTSEGTL*GSSRFS
Trigger: AGAAAACCGAGAAGATCCTCACAGAGTTCCTTCGCT...TGTGCCTTGTGGGAAAGGTGGCTGGGGTGGTGTGGCATCTCCAGGGGTCTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR TCA 90 bp CAAGGCACTAGAGAACATGGAAAGAAGTCAGTACTCGGAGTGAGGGCAGGGGACTGTCGCTGCCGCTCCTaGGGCTTTCCCTTCAGCCGT +
Preference number: 4 (lower is better)
Translates to: QGTREHGKKSVLGVRAGDCRCRS*GFPFSR
Trigger: ACGGCTGAAGGGAAAGCCTCAGGAGCGGCAGCGACA...GTCCCCTGCCCTCACTCCGAGTACTGACTTCTTTCCATGTTCTCTAGTGCCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp AGACCCCTGGAGATGCCACACCACCCCAGCCACCTTTCCCACAAGGCACAAACTTCCCTGGCAGGGAATTaGCGACCAGCTCCAGATACT +
Preference number: 4 (lower is better)
Translates to: RPLEMPHHPSHLSHKAQTSLAGN*RPAPDT
Trigger: AGTATCTGGAGCTGGTCGGCAATTCCCTGCCAGGGA...AGTTTGTGCCTTGTGGGAAAGGTGGCTGGGGTGGTGTGGCATCTCCAGGGGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp AGACCCCTGGAGATGCCACACCACCCCAGCCACCTTTCCCACAAGGCACAAACTTCCTTCATGACCGTCTaGAGCACCACCTCCTCGTAC +
Preference number: 4 (lower is better)
Translates to: RPLEMPHHPSHLSHKAQTSFMTV*STTSSY
Trigger: GTACGAGGAGGTGGTGCTGCAGACGGTCATGAAGGA...AGTTTGTGCCTTGTGGGAAAGGTGGCTGGGGTGGTGTGGCATCTCCAGGGGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp AGACCCCTGGAGATGCCACACCACCCCAGCCACCTTTCCCACAAGGCACAAACTAGGTTGTGTTTGCGCTaGACTGCGGCCTCCTTCACA +
Preference number: 4 (lower is better)
Translates to: RPLEMPHHPSHLSHKAQTRLCLR*TAASFT
Trigger: TGTGAAGGAGGCCGCAGTGCAGCGCAAACACAACCT...AGTTTGTGCCTTGTGGGAAAGGTGGCTGGGGTGGTGTGGCATCTCCAGGGGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp TGTACTGAACCCCATAAAGTGACTTGGGTAGGCCAGACCCCTGGAGATGCCACAGGGGAGCTTTCAGCCTaGAGGTCCTGGGCCAACAGG +
Preference number: 4 (lower is better)
Translates to: CTEPHKVTWVGQTPGDATGELSA*RSWANR
Trigger: CCTGTTGGCCCAGGACCTGCAGGCTGAAAGCTCCCC...TGTGGCATCTCCAGGGGTCTGGCCTACCCAAGTCACTTTATGGGGTTCAGTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CCA 90 bp CTTTGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGACACTTCCTTTCGATGTGGTCCCTaGCAGGGAATTGCCGACCAG +
Preference number: 4 (lower is better)
Translates to: LCHPGKDTPKLPPPQDTSFRCGP*QGIADQ
Trigger: CTGGTCGGCAATTCCCTGCCAGGGACCACATCGAAA...GGAAGTGTCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCAAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CCA 90 bp TGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGACACTTCCCCTGGGTGGTATGCCAGCTaGGATAGCTTCTCCATGTAC +
Preference number: 4 (lower is better)
Translates to: CHPGKDTPKLPPPQDTSPGWYAS*DSFSMY
Trigger: GTACATGGAGAAGCTATCCCAGCTGGCATACCACCC...AGGGGAAGTGTCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp TTTGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGACACTTCCCCCTCCATCACCAGGTTaGTTAGGATCTGCACCTCGT +
Preference number: 4 (lower is better)
Translates to: FAILAKTLPSSLPLRTLPPPSPG*LGSAPR
Trigger: ACGAGGTGCAGATCCTAAGCAACCTGGTGATGGAGG...GGGAAGTGTCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CCA 90 bp CTTTGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGACACTTCCATTTGCTCTCGCATGTaGATCTGGGCTCGCTGCTTG +
Preference number: 4 (lower is better)
Translates to: LCHPGKDTPKLPPPQDTSICSRM*IWARCL
Trigger: CAAGCAGCGAGCCCAGATCCACATGCGAGAGCAAAT...GGAAGTGTCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCAAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CCA 90 bp TGTACTGAACCCCATAAAGTGACTTGGGTAGGCCAGACCCCTGGAGATGCCACAAAGAGGGCTGGCTGGTaGGGAGCTTTCAGCCTGCAG +
Preference number: 4 (lower is better)
Translates to: CTEPHKVTWVGQTPGDATKRAGW*GAFSLQ
Trigger: CTGCAGGCTGAAAGCTCCCCACCAGCCAGCCCTCTT...TGTGGCATCTCCAGGGGTCTGGCCTACCCAAGTCACTTTATGGGGTTCAGTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CCA 90 bp TGTACTGAACCCCATAAAGTGACTTGGGTAGGCCAGACCCCTGGAGATGCCACAGAGAAGAGGGCTGGCTaGTGGGGAGCTTTCAGCCTG +
Preference number: 4 (lower is better)
Translates to: CTEPHKVTWVGQTPGDATEKRAG*WGAFSL
Trigger: CAGGCTGAAAGCTCCCCACCAGCCAGCCCTCTTCTC...TGTGGCATCTCCAGGGGTCTGGCCTACCCAAGTCACTTTATGGGGTTCAGTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR TCA 90 bp CAAGGCACTAGAGAACATGGAAAGAAGTCAGTACTCGGAGTGAGGGCAGGGGACGCCGTACTGCTCCTTTaGCTGGCGGTACATGCGGAT +
Preference number: 4 (lower is better)
Translates to: QGTREHGKKSVLGVRAGDAVLLL*LAVHAD
Trigger: ATCCGCATGTACCGCCAGTCAAAGGAGCAGTACGGC...GTCCCCTGCCCTCACTCCGAGTACTGACTTCTTTCCATGTTCTCTAGTGCCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp ACTAGAGAACATGGAAAGAAGTCAGTACTCGGAGTGAGGGCAGGGGACTGGGTGTCCCAGGTGCCGTACTaGTCCTTTGACTGGCGGTAC +
Preference number: 4 (lower is better)
Translates to: TREHGKKSVLGVRAGDWVSQVPY*SFDWRY
Trigger: GTACCGCCAGTCAAAGGAGCAGTACGGCACCTGGGA...CACCCAGTCCCCTGCCCTCACTCCGAGTACTGACTTCTTTCCATGTTCTCTAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp AGACCCCTGGAGATGCCACACCACCCCAGCCACCTTTCCCACAAGGCACAAACTATCTTGCTGGCCAGATaGTCCTTGGAGGTGATGATC +
Preference number: 4 (lower is better)
Translates to: RPLEMPHHPSHLSHKAQTILLAR*SLEVMI
Trigger: GATCATCACCTCCAAGGAGCATCTGGCCAGCAAGAT...AGTTTGTGCCTTGTGGGAAAGGTGGCTGGGGTGGTGTGGCATCTCCAGGGGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp CAAGGCACTAGAGAACATGGAAAGAAGTCAGTACTCGGAGTGAGGGCAGGGGACCCCAGTCGATTGGTGTaGCCTCAGCCAGCAGGTGTA +
Preference number: 4 (lower is better)
Translates to: QGTREHGKKSVLGVRAGDPSRLV*PQPAGV
Trigger: TACACCTGCTGGCTGAGGGCACACCAATCGACTGGG...GTCCCCTGCCCTCACTCCGAGTACTGACTTCTTTCCATGTTCTCTAGTGCCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CCA 90 bp AGTAACAGGTGTACTGAACCCCATAAAGTGACTTGGGTAGGCCAGACCCCTGGATGCTCTCCGGTCTCTTaGTCACTGGGCTTAGGGGGC +
Preference number: 4 (lower is better)
Translates to: SNRCTEPHKVTWVGQTPGCSPVS*SLGLGG
Trigger: GCCCCCTAAGCCCAGTGACCAAGAGACCGGAGAGCA...TCCAGGGGTCTGGCCTACCCAAGTCACTTTATGGGGTTCAGTACACCTGTTACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR TCA 90 bp AAGACACTCCAACTTCAGCTACCTTCACTTTGCCATCCTGGCAAAGACACTCCCGCAGGAAGGGAATGGTaGTCTGCAGCAGCGCCTCTC +
Preference number: 4 (lower is better)
Translates to: KTLQLQLPSLCHPGKDTPAGREW*SAAAPL
Trigger: GAGAGGCGCTGCTGCAGATCACCATTCCCTTCCTGC...GGGAGTGTCTTTGCCAGGATGGCAAAGTGAAGGTAGCTGAAGTTGGAGTGTCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR TCA 90 bp AGACCCCTGGAGATGCCACACCACCCCAGCCACCTTTCCCACAAGGCACAAACTTGTTCTCCACCAGGATaGACCTGGCAAAGTCTTCAA +
Preference number: 4 (lower is better)
Translates to: RPLEMPHHPSHLSHKAQTCSPPG*TWQSLQ
Trigger: TTGAAGACTTTGCCAGGTTCATCCTGGTGGAGAACA...AGTTTGTGCCTTGTGGGAAAGGTGGCTGGGGTGGTGTGGCATCTCCAGGGGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp AGACCCCTGGAGATGCCACACCACCCCAGCCACCTTTCCCACAAGGCACAAACTCCGCTTCTGTCATCATaGAGAAGTAATAGTGTCGGG +
Preference number: 4 (lower is better)
Translates to: RPLEMPHHPSHLSHKAQTPLLSS*RSNSVG
Trigger: CCCGACACTATTACTTCTGCATGATGACAGAAGCGG...AGTTTGTGCCTTGTGGGAAAGGTGGCTGGGGTGGTGTGGCATCTCCAGGGGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp TGTACTGAACCCCATAAAGTGACTTGGGTAGGCCAGACCCCTGGAGATGCCACAGCAATCCTGAAGCACTaGCTGCCACTTGTCCTGCTC +
Preference number: 4 (lower is better)
Translates to: CTEPHKVTWVGQTPGDATAILKH*LPLVLL
Trigger: GAGCAGGACAAGTGGCAGGCAGTGCTTCAGGATTGC...TGTGGCATCTCCAGGGGTCTGGCCTACCCAAGTCACTTTATGGGGTTCAGTACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp ACTAGAGAACATGGAAAGAAGTCAGTACTCGGAGTGAGGGCAGGGGACTGGGTGTTCCCCAGCTCTTGGTaGAGGAGGGTTTCGAAGGTG +
Preference number: 4 (lower is better)
Translates to: TREHGKKSVLGVRAGDWVFPSSW*RRVSKV
Trigger: CACCTTCGAAACCCTCCTGCACCAAGAGCTGGGGAA...CACCCAGTCCCCTGCCCTCACTCCGAGTACTGACTTCTTTCCATGTTCTCTAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CCA 90 bp AGTAACAGGTGTACTGAACCCCATAAAGTGACTTGGGTAGGCCAGACCCCTGGAAGGCTCGGATCTTGCTaGCCAGATGCTCCTTGGAGG +
Preference number: 4 (lower is better)
Translates to: SNRCTEPHKVTWVGQTPGRLGSC*PDAPWR
Trigger: CCTCCAAGGAGCATCTGGCCAGCAAGATCCGAGCCT...TCCAGGGGTCTGGCCTACCCAAGTCACTTTATGGGGTTCAGTACACCTGTTACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CCA 90 bp ACTAGAGAACATGGAAAGAAGTCAGTACTCGGAGTGAGGGCAGGGGACTGGGTGTGCATCTTCAGGGGGTaGTATGCCAGCTGGGATAGC +
Preference number: 4 (lower is better)
Translates to: TREHGKKSVLGVRAGDWVCIFRG*YASWDS
Trigger: GCTATCCCAGCTGGCATACCACCCCCTGAAGATGCA...CACCCAGTCCCCTGCCCTCACTCCGAGTACTGACTTCTTTCCATGTTCTCTAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR CAA 72 bp GTCACCCAAGACACTCCAACTTCAGCTACCTTCACTTaGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCC +
Preference number: 4 (lower is better)
Translates to: VTQDTPTSATFT*PSWQRHSQAPS
Trigger: GGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCAAAGTGAAGGTAGCTGAAGTTGGAGTGTCTTGGGTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp GTTTGCATAGATTCTTCATACCATATCTGGAAGGATGGTGGAAACCCCCAAGGCCATCCAGGGGCACCTTaGGCCAGAGCAGCTGTGCCT +
Preference number: 4 (lower is better)
Translates to: VCIDSSYHIWKDGGNPQGHPGAP*ARAAVP
Trigger: AGGCACAGCTGCTCTGGCGCAAGGTGCCCCTGGATG...GCCTTGGGGGTTTCCACCATCCTTCCAGATATGGTATGAAGAATCTATGCAAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CCA 90 bp GTTTGCATAGATTCTTCATACCATATCTGGAAGGATGGTGGAAACCCCCAAGGCGATGACGGCCCGGGGTaGTATCTGCCGCTCATAGGC +
Preference number: 4 (lower is better)
Translates to: VCIDSSYHIWKDGGNPQGDDGPG*YLPLIG
Trigger: GCCTATGAGCGGCAGATACCACCCCGGGCCGTCATC...GCCTTGGGGGTTTCCACCATCCTTCCAGATATGGTATGAAGAATCTATGCAAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CCA 90 bp AGTAACAGGTGTACTGAACCCCATAAAGTGACTTGGGTAGGCCAGACCCCTGGAGAGAGGGAACTGCGTTaGGCACTTAAGGATGGGGGT +
Preference number: 4 (lower is better)
Translates to: SNRCTEPHKVTWVGQTPGERELR*ALKDGG
Trigger: ACCCCCATCCTTAAGTGCCCAACGCAGTTCCCTCTC...TCCAGGGGTCTGGCCTACCCAAGTCACTTTATGGGGTTCAGTACACCTGTTACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CCA 90 bp CAAGGCACTAGAGAACATGGAAAGAAGTCAGTACTCGGAGTGAGGGCAGGGGACTCAGAGCCTCCAAGATaGATGGGATGTAGGGCTGGA +
Preference number: 4 (lower is better)
Translates to: QGTREHGKKSVLGVRAGDSEPPR*MGCRAG
Trigger: TCCAGCCCTACATCCCATCCATCTTGGAGGCTCTGA...GTCCCCTGCCCTCACTCCGAGTACTGACTTCTTTCCATGTTCTCTAGTGCCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CCA 90 bp TGTACTGAACCCCATAAAGTGACTTGGGTAGGCCAGACCCCTGGAGATGCCACACGCTCTAGAATCCGCTaGATGGATTTGCACAGCTCC +
Preference number: 4 (lower is better)
Translates to: CTEPHKVTWVGQTPGDATRSRIR*MDLHSS
Trigger: GGAGCTGTGCAAATCCATCCAGCGGATTCTAGAGCG...TGTGGCATCTCCAGGGGTCTGGCCTACCCAAGTCACTTTATGGGGTTCAGTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp GTTTGCATAGATTCTTCATACCATATCTGGAAGGATGGTGGAAACCCCCAAGGCGTGGCAGCTCCGACTTaGAGGTGGGGGCCAGCTTTT +
Preference number: 4 (lower is better)
Translates to: VCIDSSYHIWKDGGNPQGVAAPT*RWGPAF
Trigger: AAAAGCTGGCCCCCACCTGCAAGTCGGAGCTGCCAC...GCCTTGGGGGTTTCCACCATCCTTCCAGATATGGTATGAAGAATCTATGCAAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CCA 90 bp AAGACACTCCAACTTCAGCTACCTTCACTTTGCCATCCTGGCAAAGACACTCCCTCAAAGATCAGCTCCTaGAAGCGTGGCAGCTCCGAC +
Preference number: 4 (lower is better)
Translates to: KTLQLQLPSLCHPGKDTPSKISS*KRGSSD
Trigger: GTCGGAGCTGCCACGCTTCCAGGAGCTGATCTTTGA...GGGAGTGTCTTTGCCAGGATGGCAAAGTGAAGGTAGCTGAAGTTGGAGTGTCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CCA 90 bp AAGACACTCCAACTTCAGCTACCTTCACTTTGCCATCCTGGCAAAGACACTCCCTTGGAGGTGATGATCTaGTCCATGTCGGTGCGGATG +
Preference number: 4 (lower is better)
Translates to: KTLQLQLPSLCHPGKDTPLEVMI*SMSVRM
Trigger: CATCCGCACCGACATGGACCAGATCATCACCTCCAA...GGGAGTGTCTTTGCCAGGATGGCAAAGTGAAGGTAGCTGAAGTTGGAGTGTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CCA 90 bp GTTTGCATAGATTCTTCATACCATATCTGGAAGGATGGTGGAAACCCCCAAGGCCCCGTCGAGCCGCAGTaGCTCCATCTTCTCATAGCA +
Preference number: 4 (lower is better)
Translates to: VCIDSSYHIWKDGGNPQGPVEPQ*LHLLIA
Trigger: TGCTATGAGAAGATGGAGCCACTGCGGCTCGACGGG...GCCTTGGGGGTTTCCACCATCCTTCCAGATATGGTATGAAGAATCTATGCAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp GTTTGCATAGATTCTTCATACCATATCTGGAAGGATGGTGGAAACCCCCAAGGCGCCTGCCACTTGTCCTaGTCCGCTTCTGTCATCATG +
Preference number: 4 (lower is better)
Translates to: VCIDSSYHIWKDGGNPQGACHLS*SASVIM
Trigger: CATGATGACAGAAGCGGAGCAGGACAAGTGGCAGGC...GCCTTGGGGGTTTCCACCATCCTTCCAGATATGGTATGAAGAATCTATGCAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp GTTTGCATAGATTCTTCATACCATATCTGGAAGGATGGTGGAAACCCCCAAGGCGGATCTGCACCTCGTTaGCACACAGCATTTCCCAGG +
Preference number: 4 (lower is better)
Translates to: VCIDSSYHIWKDGGNPQGGSAPR*HTAFPR
Trigger: CCTGGGAAATGCTGTGTGGCAACGAGGTGCAGATCC...GCCTTGGGGGTTTCCACCATCCTTCCAGATATGGTATGAAGAATCTATGCAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp AAGACACTCCAACTTCAGCTACCTTCACTTTGCCATCCTGGCAAAGACACTCCCAGCACGTCCTCAAAGTaGACCTTGGCCTGTTCAAAT +
Preference number: 4 (lower is better)
Translates to: KTLQLQLPSLCHPGKDTPSTSSK*TLACSN
Trigger: ATTTGAACAGGCCAAGGTGCACTTTGAGGACGTGCT...GGGAGTGTCTTTGCCAGGATGGCAAAGTGAAGGTAGCTGAAGTTGGAGTGTCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp GTTTGCATAGATTCTTCATACCATATCTGGAAGGATGGTGGAAACCCCCAAGGCAGGATGAGAGGGAACTaGGTTGGGCACTTAAGGATG +
Preference number: 4 (lower is better)
Translates to: VCIDSSYHIWKDGGNPQGRMRGN*VGHLRM
Trigger: CATCCTTAAGTGCCCAACGCAGTTCCCTCTCATCCT...GCCTTGGGGGTTTCCACCATCCTTCCAGATATGGTATGAAGAATCTATGCAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CCA 90 bp CAAGGCACTAGAGAACATGGAAAGAAGTCAGTACTCGGAGTGAGGGCAGGGGACTTCTTATTGTCTTCCTaGTACTGGAAAAGGTTTCCG +
Preference number: 4 (lower is better)
Translates to: QGTREHGKKSVLGVRAGDFLLSS*YWKRFP
Trigger: CGGAAACCTTTTCCAGTACCAGGAAGACAATAAGAA...GTCCCCTGCCCTCACTCCGAGTACTGACTTCTTTCCATGTTCTCTAGTGCCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR GCA 90 bp GTTTGCATAGATTCTTCATACCATATCTGGAAGGATGGTGGAAACCCCCAAGGCTCTTGCGCACAGAACTaGTGTCATAGTCGTATTTCT +
Preference number: 4 (lower is better)
Translates to: VCIDSSYHIWKDGGNPQGSCAQN*CHSRIS
Trigger: AGAAATACGACTATGACAGCAGTTCTGTGCGCAAGA...GCCTTGGGGGTTTCCACCATCCTTCCAGATATGGTATGAAGAATCTATGCAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
3UTR CAA 72 bp ATAAAGCGTTTATTGATGAGCAGAAGCTTACACAGTTaGCATAGATTCTTCATACCATATCTGGAAGGATGG +
Preference number: 4 (lower is better)
Translates to: IKRLLMSRSLHS*HRFFIPYLEGW
Trigger: CCATCCTTCCAGATATGGTATGAAGAATCTATGCAAACTGTGTAAGCTTCTGCTCATCAATAAACGCTTTAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS TCA 90 bp GGCCAACAGGCCTCGGAGCTCGGTGACACTGTCCGGGGATGCAGGTaGTGGCGGTTCAACGCCAGCCTCAAAGGGCAGCCCCGACTCCTC +
Preference number: 5 (lower is better)
Translates to: GQQASELGDTVRGCR*WRFNASLKGQPRLL
Trigger: GAGGAGTCGGGGCTGCCCTTTGAGGCTGGCGTTGAACCGCCATCACCTGCATCCCCGGACAGTGTCACCGAGCTCCGAGGCCTGTTGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CAA 90 bp AGGGACACAGGACTGGGAGGGACCTCGTCCTGGGGGCCTTGGAGCGGCAGTCTCGTTCGCCCCAGTCGATaGGTGTGCCCTCAGCCAGCA +
Preference number: 5 (lower is better)
Translates to: RDTGLGGTSSWGPWSGSLVRPSR*VCPQPA
Trigger: TGCTGGCTGAGGGCACACCAATCGACTGGGGCGAAC...GAGACTGCCGCTCCAAGGCCCCCAGGACGAGGTCCCTCCCAGTCCTGTGTCCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS GCA 90 bp GGAGCCCCATTGAGAAGAGGGCTGGCTGGTGGGGAGCTTTCAGCCTaGAGGTCCTGGGCCAACAGGCCTCGGAGCTCGGTGACACTGTCC +
Preference number: 5 (lower is better)
Translates to: GAPLRRGLAGGELSA*RSWANRPRSSVTLS
Trigger: GGACAGTGTCACCGAGCTCCGAGGCCTGTTGGCCCAGGACCTGCAGGCTGAAAGCTCCCCACCAGCCAGCCCTCTTCTCAATGGGGCTCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CCA 90 bp GCTGGCGGTGAGGCCTCTGGGACTGCCACGGGTTGGGAGCTCTCTTaGACTGGAGCCCCATTGAGAAGAGGGCTGGCTGGTGGGGAGCTT +
Preference number: 5 (lower is better)
Translates to: AGGEASGTATGWELS*TGAPLRRGLAGGEL
Trigger: AAGCTCCCCACCAGCCAGCCCTCTTCTCAATGGGGCTCCAGTCCAAGAGAGCTCCCAACCCGTGGCAGTCCCAGAGGCCTCACCGCCAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CAA 90 bp AGGGACACAGGACTGGGAGGGACCTCGTCCTGGGGGCCTTGGAGCGGCAGTCTCTGGACTGGAGCCCCATaGAGAAGAGGGCTGGCTGGT +
Preference number: 5 (lower is better)
Translates to: RDTGLGGTSSWGPWSGSLWTGAP*RRGLAG
Trigger: ACCAGCCAGCCCTCTTCTCAATGGGGCTCCAGTCCA...GAGACTGCCGCTCCAAGGCCCCCAGGACGAGGTCCCTCCCAGTCCTGTGTCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CCA 90 bp GCGTTCATCCAGGGGCACCTTGCGCCAGAGCAGCTGTGCCTGCGGTaGCCCGGTGCCCTCGATCTCATGGCGCATGCTATTGAAGAGGGA +
Preference number: 5 (lower is better)
Translates to: AFIQGHLAPEQLCLR*PGALDLMAHAIEEG
Trigger: TCCCTCTTCAATAGCATGCGCCATGAGATCGAGGGCACCGGGCCACCGCAGGCACAGCTGCTCTGGCGCAAGGTGCCCCTGGATGAACGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028135.15
ENSMUST00000138781.2
CDS CCA 90 bp TTGAGAAGAGGGCTGGCTGGTGGGGAGCTTTCAGCCTGCAGGTCCTaGGCCAACAGGCCTCGGAGCTCGGTGACACTGTCCGGGGATGCA +
Preference number: 5 (lower is better)
Translates to: LRRGLAGGELSACRS*ANRPRSSVTLSGDA
Trigger: TGCATCCCCGGACAGTGTCACCGAGCTCCGAGGCCTGTTGGCCCAGGACCTGCAGGCTGAAAGCTCCCCACCAGCCAGCCCTCTTCTCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CCA 90 bp GGAGCTCTCTTGGACTGGAGCCCCATTGAGAAGAGGGCTGGCTGGTaGGGAGCTTTCAGCCTGCAGGTCCTGGGCCAACAGGCCTCGGAG +
Preference number: 5 (lower is better)
Translates to: GALLDWSPIEKRAGW*GAFSLQVLGQQASE
Trigger: CTCCGAGGCCTGTTGGCCCAGGACCTGCAGGCTGAAAGCTCCCCACCAGCCAGCCCTCTTCTCAATGGGGCTCCAGTCCAAGAGAGCTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS TCA 90 bp CGGTACACAGCGTCCGAGATCTGGATCCACTGTCGCTGCCGCTCCTaGGGCTTTCCCTTCAGCCGTGGGCCAAGCTCTGCCTTCAGCGCT +
Preference number: 5 (lower is better)
Translates to: RYTASEIWIHCRCRS*GFPFSRGPSSAFSA
Trigger: AGCGCTGAAGGCAGAGCTTGGCCCACGGCTGAAGGGAAAGCCTCAGGAGCGGCAGCGACAGTGGATCCAGATCTCGGACGCTGTGTACCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CCA 90 bp AAGGCTCGGATCTTGCTGGCCAGATGCTCCTTGGAGGTGATGATCTaGTCCATGTCGGTGCGGATGACTGCCTCCATGGCCGGCCGGGCC +
Preference number: 5 (lower is better)
Translates to: KARILLARCSLEVMI*SMSVRMTASMAGRA
Trigger: GGCCCGGCCGGCCATGGAGGCAGTCATCCGCACCGACATGGACCAGATCATCACCTCCAAGGAGCATCTGGCCAGCAAGATCCGAGCCTT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CAA 90 bp TGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGACACTTCCCCTACGCACACCTCCGCCTaGGGGAGGATGAAGGCTCGG +
Preference number: 5 (lower is better)
Translates to: CHPGKDTPKLPPPQDTSPTHTSA*GRMKAR
Trigger: CCGAGCCTTCATCCTCCCCAAGGCGGAGGTGTGCGT...AGGGGAAGTGTCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CAA 90 bp AGGGACACAGGACTGGGAGGGACCTCGTCCTGGGGGCCTTGGAGCGGCAGTCTCATCTGGGCTCGCTGCTaGAACACGGAAGTGCTAGAC +
Preference number: 5 (lower is better)
Translates to: RDTGLGGTSSWGPWSGSLIWARC*NTEVLD
Trigger: GTCTAGCACTTCCGTGTTCAAGCAGCGAGCCCAGAT...GAGACTGCCGCTCCAAGGCCCCCAGGACGAGGTCCCTCCCAGTCCTGTGTCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS GCA 90 bp GAAGATGATGCGTTCATCCAGGGGCACCTTGCGCCAGAGCAGCTGTaGCTGCGGTGGCCCGGTGCCCTCGATCTCATGGCGCATGCTATT +
Preference number: 5 (lower is better)
Translates to: EDDAFIQGHLAPEQL*LRWPGALDLMAHAI
Trigger: AATAGCATGCGCCATGAGATCGAGGGCACCGGGCCACCGCAGGCACAGCTGCTCTGGCGCAAGGTGCCCCTGGATGAACGCATCATCTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028135.15
ENSMUST00000138781.2
CDS CCA 90 bp GGTGAAGCCCTGGCTGGTGGGCACCATCAGAGCCTCCAAGATGGATaGGATGTAGGGCTGGACGTGGTTCCTCACGCACACCTCCGCCTT +
Preference number: 5 (lower is better)
Translates to: GEALAGGHHQSLQDG*DVGLDVVPHAHLRL
Trigger: AAGGCGGAGGTGTGCGTGAGGAACCACGTCCAGCCCTACATCCCATCCATCTTGGAGGCTCTGATGGTGCCCACCAGCCAGGGCTTCACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CAA 90 bp CTTTGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGACACTTCCTCATCCAGGGGCACCTaGCGCCAGAGCAGCTGTGCC +
Preference number: 5 (lower is better)
Translates to: LCHPGKDTPKLPPPQDTSSSRGT*RQSSCA
Trigger: GGCACAGCTGCTCTGGCGCAAGGTGCCCCTGGATGA...GGAAGTGTCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCAAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS TCA 90 bp TGCGCTGCACTGCGGCCTCCTTCACAGCCTGCAGGATGTCCTTCATaGCCGTCTGCAGCACCACCTCCTCGTACGTGTTCTCCACCAGGA +
Preference number: 5 (lower is better)
Translates to: CAALRPPSQPAGCPS*PSAAPPPRTCSPPG
Trigger: TCCTGGTGGAGAACACGTACGAGGAGGTGGTGCTGCAGACGGTCATGAAGGACATCCTGCAGGCTGTGAAGGAGGCCGCAGTGCAGCGCA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CAA 90 bp GGCCAGACCCCTGGAGATGCCACACCACCCCAGCCACCTTTCCCACAAGGCACAATCCGCTGGATGGATTaGCACAGCTCCTCCTTGGTG +
Preference number: 5 (lower is better)
Translates to: GQTPGDATPPQPPFPQGTIRWMD*HSSSLV
Trigger: CACCAAGGAGGAGCTGTGCAAATCCATCCAGCGGAT...TGTGCCTTGTGGGAAAGGTGGCTGGGGTGGTGTGGCATCTCCAGGGGTCTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CAA 90 bp AGGGACACAGGACTGGGAGGGACCTCGTCCTGGGGGCCTTGGAGCGGCAGTCTCTCTCGGAAGAATCTCTaGCGCACAGAACTGCTGTCA +
Preference number: 5 (lower is better)
Translates to: RDTGLGGTSSWGPWSGSLSRKNL*RTELLS
Trigger: TGACAGCAGTTCTGTGCGCAAGAGATTCTTCCGAGA...GAGACTGCCGCTCCAAGGCCCCCAGGACGAGGTCCCTCCCAGTCCTGTGTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CAA 90 bp TTTGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGACACTTCCCTGGGACTGCCACGGGTaGGGAGCTCTCTTGGACTGG +
Preference number: 5 (lower is better)
Translates to: FAILAKTLPSSLPLRTLPWDCHG*GALLDW
Trigger: CCAGTCCAAGAGAGCTCCCAACCCGTGGCAGTCCCA...GGGAAGTGTCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCAAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS TCA 90 bp CACCTCGTTGCCACACAGCATTTCCCAGGTGCCGTACTGCTCCTTTaGCTGGCGGTACATGCGGATGGCGTCTGTGAATGCAGGGCCCTC +
Preference number: 5 (lower is better)
Translates to: HLVATQHFPGAVLLL*LAVHADGVCECRAL
Trigger: GAGGGCCCTGCATTCACAGACGCCATCCGCATGTACCGCCAGTCAAAGGAGCAGTACGGCACCTGGGAAATGCTGTGTGGCAACGAGGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CCA 90 bp TCGTTGCCACACAGCATTTCCCAGGTGCCGTACTGCTCCTTTGACTaGCGGTACATGCGGATGGCGTCTGTGAATGCAGGGCCCTCCACC +
Preference number: 5 (lower is better)
Translates to: SLPHSISQVPYCSFD*RYMRMASVNAGPST
Trigger: GGTGGAGGGCCCTGCATTCACAGACGCCATCCGCATGTACCGCCAGTCAAAGGAGCAGTACGGCACCTGGGAAATGCTGTGTGGCAACGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CCA 90 bp GCACGCGCTCTAGAATCCGCTGGATGGATTTGCACAGCTCCTCCTTaGTGGGTCCCTTCCCCAGCTCTTGGTGCAGGAGGGTTTCGAAGG +
Preference number: 5 (lower is better)
Translates to: ARALESAGWICTAPP*WVPSPALGAGGFRR
Trigger: CCTTCGAAACCCTCCTGCACCAAGAGCTGGGGAAGGGACCCACCAAGGAGGAGCTGTGCAAATCCATCCAGCGGATTCTAGAGCGCGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CAA 90 bp TTTGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGACACTTCCCAGCACTGCCTGCCACTaGTCCTGCTCCGCTTCTGTC +
Preference number: 5 (lower is better)
Translates to: FAILAKTLPSSLPLRTLPSTACH*SCSASV
Trigger: GACAGAAGCGGAGCAGGACAAGTGGCAGGCAGTGCT...GGGAAGTGTCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS TCA 90 bp GCGGTACATGCGGATGGCGTCTGTGAATGCAGGGCCCTCCACCTTTaGGTTCTCCGGGATCCCGTTGTTGCAGTGTCGAACGCAATCCTG +
Preference number: 5 (lower is better)
Translates to: AVHADGVCECRALHL*VLRDPVVAVSNAIL
Trigger: CAGGATTGCGTTCGACACTGCAACAACGGGATCCCGGAGAACTCAAAGGTGGAGGGCCCTGCATTCACAGACGCCATCCGCATGTACCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS TCA 90 bp TGCCGTACTGCTCCTTTGACTGGCGGTACATGCGGATGGCGTCTGTaGATGCAGGGCCCTCCACCTTTGAGTTCTCCGGGATCCCGTTGT +
Preference number: 5 (lower is better)
Translates to: CRTAPLTGGTCGWRL*MQGPPPLSSPGSRC
Trigger: ACAACGGGATCCCGGAGAACTCAAAGGTGGAGGGCCCTGCATTCACAGACGCCATCCGCATGTACCGCCAGTCAAAGGAGCAGTACGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS GCA 90 bp ACTGCGGCCTCCTTCACAGCCTGCAGGATGTCCTTCATGACCGTCTaGAGCACCACCTCCTCGTACGTGTTCTCCACCAGGATGAACCTG +
Preference number: 5 (lower is better)
Translates to: TAASFTACRMSFMTV*STTSSYVFSTRMNL
Trigger: CAGGTTCATCCTGGTGGAGAACACGTACGAGGAGGTGGTGCTGCAGACGGTCATGAAGGACATCCTGCAGGCTGTGAAGGAGGCCGCAGT
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CCA 90 bp AGTGCTAGACACGTCGAATCGCTGCTGCAGCCCGTCGAGCCGCAGTaGCTCCATCTTCTCATAGCAGCTCTGCATCTTCAGGGGGTGGTA +
Preference number: 5 (lower is better)
Translates to: SARHVESLLQPVEPQ*LHLLIAALHLQGVV
Trigger: TACCACCCCCTGAAGATGCAGAGCTGCTATGAGAAGATGGAGCCACTGCGGCTCGACGGGCTGCAGCAGCGATTCGACGTGTCTAGCACT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CCA 90 bp CGCGCTCTAGAATCCGCTGGATGGATTTGCACAGCTCCTCCTTGGTaGGTCCCTTCCCCAGCTCTTGGTGCAGGAGGGTTTCGAAGGTGT +
Preference number: 5 (lower is better)
Translates to: RALESAGWICTAPPW*VPSPALGAGGFRRC
Trigger: ACACCTTCGAAACCCTCCTGCACCAAGAGCTGGGGAAGGGACCCACCAAGGAGGAGCTGTGCAAATCCATCCAGCGGATTCTAGAGCGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CAA 90 bp TGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGACACTTCCCCTATGAAGGCTCGGATCTaGCTGGCCAGATGCTCCTTG +
Preference number: 5 (lower is better)
Translates to: CHPGKDTPKLPPPQDTSPMKARI*LARCSL
Trigger: CAAGGAGCATCTGGCCAGCAAGATCCGAGCCTTCAT...AGGGGAAGTGTCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CAA 90 bp ACTAGAGAACATGGAAAGAAGTCAGTACTCGGAGTGAGGGCAGGGGACTGGGTGCGTGGCAGCTCCGACTaGCAGGTGGGGGCCAGCTTT +
Preference number: 5 (lower is better)
Translates to: TREHGKKSVLGVRAGDWVRGSSD*QVGASF
Trigger: AAAGCTGGCCCCCACCTGCAAGTCGGAGCTGCCACG...CACCCAGTCCCCTGCCCTCACTCCGAGTACTGACTTCTTTCCATGTTCTCTAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS TCA 90 bp GTGCCTGCGGTGGCCCGGTGCCCTCGATCTCATGGCGCATGCTATTaGAGAGGGAGACACCATACTGGTCCTCATAGAAGCGAAGGAACT +
Preference number: 5 (lower is better)
Translates to: VPAVARCPRSHGACY*RGRHHTGPHRSEGT
Trigger: AGTTCCTTCGCTTCTATGAGGACCAGTATGGTGTCTCCCTCTTCAATAGCATGCGCCATGAGATCGAGGGCACCGGGCCACCGCAGGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028135.15
ENSMUST00000138781.2
CDS GCA 90 bp GGTTGCTTAGGATCTGCACCTCGTTGCCACACAGCATTTCCCAGGTaGCGTACTGCTCCTTTGACTGGCGGTACATGCGGATGGCGTCTG +
Preference number: 5 (lower is better)
Translates to: GCLGSAPRCHTAFPR*RTAPLTGGTCGWRL
Trigger: CAGACGCCATCCGCATGTACCGCCAGTCAAAGGAGCAGTACGGCACCTGGGAAATGCTGTGTGGCAACGAGGTGCAGATCCTAAGCAACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS GCA 90 bp CGCTGTCACCGCTGTCACCGTACTGTTCGCCCCAGTCGATTGGTGTaGCCTCAGCCAGCAGGTGTAGATTGGGGTCACTATTGTGCAGAA +
Preference number: 5 (lower is better)
Translates to: RCHRCHRTVRPSRLV*PQPAGVDWGHYCAE
Trigger: TTCTGCACAATAGTGACCCCAATCTACACCTGCTGGCTGAGGGCACACCAATCGACTGGGGCGAACAGTACGGTGACAGCGGTGACAGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CAA 90 bp TTTGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGACACTTCCCATGTACTCGCCCAGCTaGTCAATGCCACCCTCGTTG +
Preference number: 5 (lower is better)
Translates to: FAILAKTLPSSLPLRTLPMYSPS*SMPPSL
Trigger: CAACGAGGGTGGCATTGACAAGCTGGGCGAGTACAT...GGGAAGTGTCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS GCA 90 bp AGGATCTGCACCTCGTTGCCACACAGCATTTCCCAGGTGCCGTACTaGTCCTTTGACTGGCGGTACATGCGGATGGCGTCTGTGAATGCA +
Preference number: 5 (lower is better)
Translates to: RICTSLPHSISQVPY*SFDWRYMRMASVNA
Trigger: TGCATTCACAGACGCCATCCGCATGTACCGCCAGTCAAAGGAGCAGTACGGCACCTGGGAAATGCTGTGTGGCAACGAGGTGCAGATCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS GCA 90 bp CCTCAGCCAGCAGGTGTAGATTGGGGTCACTATTGTGCAGAACCATaGTGTCACGGTAGAGGTTGTGTTTGCGCTGCACTGCGGCCTCCT +
Preference number: 5 (lower is better)
Translates to: PQPAGVDWGHYCAEP*CHGRGCVCAALRPP
Trigger: AGGAGGCCGCAGTGCAGCGCAAACACAACCTCTACCGTGACAGCATGGTTCTGCACAATAGTGACCCCAATCTACACCTGCTGGCTGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CAA 90 bp AGGGACACAGGACTGGGAGGGACCTCGTCCTGGGGGCCTTGGAGCGGCAGTCTCTTTCTCCACTTCTTATaGTCTTCCTGGTACTGGAAA +
Preference number: 5 (lower is better)
Translates to: RDTGLGGTSSWGPWSGSLFLHFL*SSWYWK
Trigger: TTTCCAGTACCAGGAAGACAATAAGAAGTGGAGAAA...GAGACTGCCGCTCCAAGGCCCCCAGGACGAGGTCCCTCCCAGTCCTGTGTCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS GCA 90 bp GGTCACTATTGTGCAGAACCATGCTGTCACGGTAGAGGTTGTGTTTaGGCTGCACTGCGGCCTCCTTCACAGCCTGCAGGATGTCCTTCA +
Preference number: 5 (lower is better)
Translates to: GHYCAEPCCHGRGCV*AALRPPSQPAGCPS
Trigger: TGAAGGACATCCTGCAGGCTGTGAAGGAGGCCGCAGTGCAGCGCAAACACAACCTCTACCGTGACAGCATGGTTCTGCACAATAGTGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CCA 90 bp GTTCGCCCCAGTCGATTGGTGTGCCCTCAGCCAGCAGGTGTAGATTaGGGTCACTATTGTGCAGAACCATGCTGTCACGGTAGAGGTTGT +
Preference number: 5 (lower is better)
Translates to: VRPSRLVCPQPAGVD*GHYCAEPCCHGRGC
Trigger: ACAACCTCTACCGTGACAGCATGGTTCTGCACAATAGTGACCCCAATCTACACCTGCTGGCTGAGGGCACACCAATCGACTGGGGCGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CAA 90 bp AGACCCCTGGAGATGCCACACCACCCCAGCCACCTTTCCCACAAGGCACAAACTTCATGGCGCATGCTATaGAAGAGGGAGACACCATAC +
Preference number: 5 (lower is better)
Translates to: RPLEMPHHPSHLSHKAQTSWRML*KRETPY
Trigger: GTATGGTGTCTCCCTCTTCAATAGCATGCGCCATGA...AGTTTGTGCCTTGTGGGAAAGGTGGCTGGGGTGGTGTGGCATCTCCAGGGGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CAA 90 bp CAAGGCACTAGAGAACATGGAAAGAAGTCAGTACTCGGAGTGAGGGCAGGGGACTGCCGTACTGCTCCTTaGACTGGCGGTACATGCGGA +
Preference number: 5 (lower is better)
Translates to: QGTREHGKKSVLGVRAGDCRTAP*TGGTCG
Trigger: TCCGCATGTACCGCCAGTCAAAGGAGCAGTACGGCA...GTCCCCTGCCCTCACTCCGAGTACTGACTTCTTTCCATGTTCTCTAGTGCCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CAA 90 bp TTTGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGACACTTCCCTCCTCAAAGTGCACCTaGGCCTGTTCAAATACCAGG +
Preference number: 5 (lower is better)
Translates to: FAILAKTLPSSLPLRTLPSSKCT*ACSNTR
Trigger: CCTGGTATTTGAACAGGCCAAGGTGCACTTTGAGGA...GGGAAGTGTCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CAA 90 bp CAAGGCACTAGAGAACATGGAAAGAAGTCAGTACTCGGAGTGAGGGCAGGGGACCTGGCCAGATGCTCCTaGGAGGTGATGATCTGGTCC +
Preference number: 5 (lower is better)
Translates to: QGTREHGKKSVLGVRAGDLARCS*EVMIWS
Trigger: GGACCAGATCATCACCTCCAAGGAGCATCTGGCCAG...GTCCCCTGCCCTCACTCCGAGTACTGACTTCTTTCCATGTTCTCTAGTGCCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CAA 90 bp CTTTGCCATCCTGGCAAAGACACTCCCAAGCTCCCTCCCCCTCAGGACACTTCCATGTCTGTGACCTCTTaGAAGAAGACATCCCGCACC +
Preference number: 5 (lower is better)
Translates to: LCHPGKDTPKLPPPQDTSMSVTS*KKTSRT
Trigger: GGTGCGGGATGTCTTCTTCAAAGAGGTCACAGACAT...GGAAGTGTCCTGAGGGGGAGGGAGCTTGGGAGTGTCTTTGCCAGGATGGCAAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CAA 90 bp TGTACTGAACCCCATAAAGTGACTTGGGTAGGCCAGACCCCTGGAGATGCCACATCCCTTCCCCAGCTCTaGGTGCAGGAGGGTTTCGAA +
Preference number: 5 (lower is better)
Translates to: CTEPHKVTWVGQTPGDATSLPQL*VQEGFE
Trigger: TTCGAAACCCTCCTGCACCAAGAGCTGGGGAAGGGA...TGTGGCATCTCCAGGGGTCTGGCCTACCCAAGTCACTTTATGGGGTTCAGTACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CAA 90 bp ACTAGAGAACATGGAAAGAAGTCAGTACTCGGAGTGAGGGCAGGGGACTGGGTGGTGGGGGCCAGCTTTTaGAGCAGGAAGGGAATGGTG +
Preference number: 5 (lower is better)
Translates to: TREHGKKSVLGVRAGDWVVGASF*SRKGMV
Trigger: CACCATTCCCTTCCTGCTCAAAAAGCTGGCCCCCAC...CACCCAGTCCCCTGCCCTCACTCCGAGTACTGACTTCTTTCCATGTTCTCTAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS TCA 90 bp AGAGGGAGACACCATACTGGTCCTCATAGAAGCGAAGGAACTCTGTaGGGATCTTCTCGGTTTTCTCTGCGATGTGCTGGCGCCGTGCGT +
Preference number: 5 (lower is better)
Translates to: RGRHHTGPHRSEGTL*GSSRFSLRCAGAVR
Trigger: ACGCACGGCGCCAGCACATCGCAGAGAAAACCGAGAAGATCCTCACAGAGTTCCTTCGCTTCTATGAGGACCAGTATGGTGTCTCCCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS GCA 90 bp CTCATAGAAGCGAAGGAACTCTGTGAGGATCTTCTCGGTTTTCTCTaGGATGTGCTGGCGCCGTGCGTCATCCAGGTGTGTGGACAGTAC +
Preference number: 5 (lower is better)
Translates to: LIEAKELCEDLLGFL*DVLAPCVIQVCGQY
Trigger: GTACTGTCCACACACCTGGATGACGCACGGCGCCAGCACATCGCAGAGAAAACCGAGAAGATCCTCACAGAGTTCCTTCGCTTCTATGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS GCA 90 bp TACACAGCATTGTCCATTTGCTCTCGCATGTGGATCTGGGCTCGCTaGTTGAACACGGAAGTGCTAGACACGTCGAATCGCTGCTGCAGC +
Preference number: 5 (lower is better)
Translates to: YTALSICSRMWIWAR*LNTEVLDTSNRCCS
Trigger: GCTGCAGCAGCGATTCGACGTGTCTAGCACTTCCGTGTTCAAGCAGCGAGCCCAGATCCACATGCGAGAGCAAATGGACAATGCTGTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CAA 90 bp AGTAACAGGTGTACTGAACCCCATAAAGTGACTTGGGTAGGCCAGACCCCTGGAAGGATCTGCACCTCGTaGCCACACAGCATTTCCCAG +
Preference number: 5 (lower is better)
Translates to: SNRCTEPHKVTWVGQTPGRICTS*PHSISQ
Trigger: CTGGGAAATGCTGTGTGGCAACGAGGTGCAGATCCT...TCCAGGGGTCTGGCCTACCCAAGTCACTTTATGGGGTTCAGTACACCTGTTACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CAA 90 bp GTTTGCATAGATTCTTCATACCATATCTGGAAGGATGGTGGAAACCCCCAAGGCTTGCACAGCTCCTCCTaGGTGGGTCCCTTCCCCAGC +
Preference number: 5 (lower is better)
Translates to: VCIDSSYHIWKDGGNPQGLHSSS*VGPFPS
Trigger: GCTGGGGAAGGGACCCACCAAGGAGGAGCTGTGCAA...GCCTTGGGGGTTTCCACCATCCTTCCAGATATGGTATGAAGAATCTATGCAAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS-3UTR CAA 90 bp CAAGGCACTAGAGAACATGGAAAGAAGTCAGTACTCGGAGTGAGGGCAGGGGACGCCAGCAGGTGTAGATaGGGGTCACTATTGTGCAGA +
Preference number: 5 (lower is better)
Translates to: QGTREHGKKSVLGVRAGDASRCR*GSLLCR
Trigger: TCTGCACAATAGTGACCCCAATCTACACCTGCTGGC...GTCCCCTGCCCTCACTCCGAGTACTGACTTCTTTCCATGTTCTCTAGTGCCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS TCA 90 bp ACTTCTTATTGTCTTCCTGGTACTGGAAAAGGTTTCCGGAGAAGATaGTGCGTTCATCCAGGGGCACCTTGCGCCAGAGCAGCTGTGCCT +
Preference number: 5 (lower is better)
Translates to: TSYCLPGTGKGFRRR*CVHPGAPCARAAVP
Trigger: AGGCACAGCTGCTCTGGCGCAAGGTGCCCCTGGATGAACGCATCATCTTCTCCGGAAACCTTTTCCAGTACCAGGAAGACAATAAGAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028135.15
ENSMUST00000138781.2
CDS CCA 90 bp ACCAGGCTGAAGCGGTTTCTCCACTTCTTATTGTCTTCCTGGTACTaGAAAAGGTTTCCGGAGAAGATGATGCGTTCATCCAGGGGCACC +
Preference number: 5 (lower is better)
Translates to: TRLKRFLHFLLSSWY*KRFPEKMMRSSRGT
Trigger: GGTGCCCCTGGATGAACGCATCATCTTCTCCGGAAACCTTTTCCAGTACCAGGAAGACAATAAGAAGTGGAGAAACCGCTTCAGCCTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028135.15
ENSMUST00000138781.2
CDS CCA 90 bp TGGGGCACCAGGCTGAAGCGGTTTCTCCACTTCTTATTGTCTTCCTaGTACTGGAAAAGGTTTCCGGAGAAGATGATGCGTTCATCCAGG +
Preference number: 5 (lower is better)
Translates to: WGTRLKRFLHFLLSS*YWKRFPEKMMRSSR
Trigger: CCTGGATGAACGCATCATCTTCTCCGGAAACCTTTTCCAGTACCAGGAAGACAATAAGAAGTGGAGAAACCGCTTCAGCCTGGTGCCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028135.15
ENSMUST00000138781.2
CDS-3UTR CAA 90 bp CAAGGCACTAGAGAACATGGAAAGAAGTCAGTACTCGGAGTGAGGGCAGGGGACAGATTGGGGTCACTATaGTGCAGAACCATGCTGTCA +
Preference number: 5 (lower is better)
Translates to: QGTREHGKKSVLGVRAGDRLGSL*CRTMLS
Trigger: TGACAGCATGGTTCTGCACAATAGTGACCCCAATCT...GTCCCCTGCCCTCACTCCGAGTACTGACTTCTTTCCATGTTCTCTAGTGCCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS TCA 90 bp CTTTGTTCTCATATAGCACCAGCCCATAGTTATGGGGCACCAGGCTaGAGCGGTTTCTCCACTTCTTATTGTCTTCCTGGTACTGGAAAA +
Preference number: 5 (lower is better)
Translates to: LCSHIAPAHSYGAPG*SGFSTSYCLPGTGK
Trigger: TTTTCCAGTACCAGGAAGACAATAAGAAGTGGAGAAACCGCTTCAGCCTGGTGCCCCATAACTATGGGCTGGTGCTATATGAGAACAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS GCA 72 bp GCGTTCATCCAGGGGCACCTTGCGCCAGAGCAGCTGTaGCTGCGGTGGCCCGGTGCCCTCGATCTCATGGCG +
Preference number: 6 (lower is better)
Translates to: AFIQGHLAPEQL*LRWPGALDLMA
Trigger: CGCCATGAGATCGAGGGCACCGGGCCACCGCAGGCACAGCTGCTCTGGCGCAAGGTGCCCCTGGATGAACGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028135.15
ENSMUST00000138781.2
CDS CCA 72 bp GGGCTGGCTGGTGGGGAGCTTTCAGCCTGCAGGTCCTaGGCCAACAGGCCTCGGAGCTCGGTGACACTGTCC +
Preference number: 6 (lower is better)
Translates to: GLAGGELSACRS*ANRPRSSVTLS
Trigger: GGACAGTGTCACCGAGCTCCGAGGCCTGTTGGCCCAGGACCTGCAGGCTGAAAGCTCCCCACCAGCCAGCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS TCA 72 bp GCCTCGGAGCTCGGTGACACTGTCCGGGGATGCAGGTaGTGGCGGTTCAACGCCAGCCTCAAAGGGCAGCCC +
Preference number: 6 (lower is better)
Translates to: ASELGDTVRGCR*WRFNASLKGQP
Trigger: GGGCTGCCCTTTGAGGCTGGCGTTGAACCGCCATCACCTGCATCCCCGGACAGTGTCACCGAGCTCCGAGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CCA 72 bp CAGGGGCACCTTGCGCCAGAGCAGCTGTGCCTGCGGTaGCCCGGTGCCCTCGATCTCATGGCGCATGCTATT +
Preference number: 6 (lower is better)
Translates to: QGHLAPEQLCLR*PGALDLMAHAI
Trigger: AATAGCATGCGCCATGAGATCGAGGGCACCGGGCCACCGCAGGCACAGCTGCTCTGGCGCAAGGTGCCCCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028135.15
ENSMUST00000138781.2
CDS TCA 72 bp GCGTCCGAGATCTGGATCCACTGTCGCTGCCGCTCCTaGGGCTTTCCCTTCAGCCGTGGGCCAAGCTCTGCC +
Preference number: 6 (lower is better)
Translates to: ASEIWIHCRCRS*GFPFSRGPSSA
Trigger: GGCAGAGCTTGGCCCACGGCTGAAGGGAAAGCCTCAGGAGCGGCAGCGACAGTGGATCCAGATCTCGGACGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS TCA 72 bp CCTGCAGGTCCTGGGCCAACAGGCCTCGGAGCTCGGTaGCACTGTCCGGGGATGCAGGTGATGGCGGTTCAA +
Preference number: 6 (lower is better)
Translates to: PAGPGPTGLGAR*HCPGMQVMAVQ
Trigger: TTGAACCGCCATCACCTGCATCCCCGGACAGTGTCACCGAGCTCCGAGGCCTGTTGGCCCAGGACCTGCAGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS GCA 72 bp CTCCTGAGGCTTTCCCTTCAGCCGTGGGCCAAGCTCTaGCTTCAGCGCTGGGCCCAGCTCCTCCATCACCAG +
Preference number: 6 (lower is better)
Translates to: LLRLSLQPWAKL*LQRWAQLLHHQ
Trigger: CTGGTGATGGAGGAGCTGGGCCCAGCGCTGAAGGCAGAGCTTGGCCCACGGCTGAAGGGAAAGCCTCAGGAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CCA 72 bp CGGCTACCGGGGCTAGACACCTGCTCTCCGGTCTCTTaGTCACTGGGCTTAGGGGGCTCAAGGTCCACAGCC +
Preference number: 6 (lower is better)
Translates to: RLPGLDTCSPVS*SLGLGGSRSTA
Trigger: GGCTGTGGACCTTGAGCCCCCTAAGCCCAGTGACCAAGAGACCGGAGAGCAGGTGTCTAGCCCCGGTAGCCG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS GCA 72 bp AGCCCCGACTCCTCGTCCTGGACCACGGACATCACCTaGTTGGCACGCCTGCGCTTTTCTGTGAGGGTGGCT +
Preference number: 6 (lower is better)
Translates to: SPDSSSWTTDIT*LARLRFSVRVA
Trigger: AGCCACCCTCACAGAAAAGCGCAGGCGTGCCAAGCAGGTGATGTCCGTGGTCCAGGACGAGGAGTCGGGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CCA 72 bp GAGGCCTCTGGGACTGCCACGGGTTGGGAGCTCTCTTaGACTGGAGCCCCATTGAGAAGAGGGCTGGCTGGT +
Preference number: 6 (lower is better)
Translates to: EASGTATGWELS*TGAPLRRGLAG
Trigger: ACCAGCCAGCCCTCTTCTCAATGGGGCTCCAGTCCAAGAGAGCTCCCAACCCGTGGCAGTCCCAGAGGCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CCA 72 bp GAGGCTGGCGGTGAGGCCTCTGGGACTGCCACGGGTTaGGAGCTCTCTTGGACTGGAGCCCCATTGAGAAGA +
Preference number: 6 (lower is better)
Translates to: EAGGEASGTATG*ELSWTGAPLRR
Trigger: TCTTCTCAATGGGGCTCCAGTCCAAGAGAGCTCCCAACCCGTGGCAGTCCCAGAGGCCTCACCGCCAGCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CAA 72 bp TTTCCGGAGAAGATGATGCGTTCATCCAGGGGCACCTaGCGCCAGAGCAGCTGTGCCTGCGGTGGCCCGGTG +
Preference number: 6 (lower is better)
Translates to: FPEKMMRSSRGT*RQSSCACGGPV
Trigger: CACCGGGCCACCGCAGGCACAGCTGCTCTGGCGCAAGGTGCCCCTGGATGAACGCATCATCTTCTCCGGAAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028135.15
ENSMUST00000138781.2
CDS CAA 72 bp CCCGACTCCTCGTCCTGGACCACGGACATCACCTGCTaGGCACGCCTGCGCTTTTCTGTGAGGGTGGCTGCT +
Preference number: 6 (lower is better)
Translates to: PDSSSWTTDITC*ARLRFSVRVAA
Trigger: AGCAGCCACCCTCACAGAAAAGCGCAGGCGTGCCAAGCAGGTGATGTCCGTGGTCCAGGACGAGGAGTCGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CAA 72 bp ACGGCTACCGGGGCTAGACACCTGCTCTCCGGTCTCTaGGTCACTGGGCTTAGGGGGCTCAAGGTCCACAGC +
Preference number: 6 (lower is better)
Translates to: TATGARHLLSGL*VTGLRGLKVHS
Trigger: GCTGTGGACCTTGAGCCCCCTAAGCCCAGTGACCAAGAGACCGGAGAGCAGGTGTCTAGCCCCGGTAGCCGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CAA 90 bp TCTGGGACTGCCACGGGTTGGGAGCTCTCTTGGACTGGAGCCCCATaGAGAAGAGGGCTGGCTGGTGGGGAGCTTTCAGCCTGCAGGTCC +
Preference number: 6 (lower is better)
Translates to: SGTATGWELSWTGAP*RRGLAGGELSACRS
Trigger: GGACCTGCAGGCTGAAAGCTCCCCACCAGCCAGCCCTCTTCTCAATGGGGCTCCAGTCCAAGAGAGCTCCCAACCCGTGGCAGTCCCAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CAA 90 bp TGGAAAAGGTTTCCGGAGAAGATGATGCGTTCATCCAGGGGCACCTaGCGCCAGAGCAGCTGTGCCTGCGGTGGCCCGGTGCCCTCGATC +
Preference number: 6 (lower is better)
Translates to: WKRFPEKMMRSSRGT*RQSSCACGGPVPSI
Trigger: GATCGAGGGCACCGGGCCACCGCAGGCACAGCTGCTCTGGCGCAAGGTGCCCCTGGATGAACGCATCATCTTCTCCGGAAACCTTTTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028135.15
ENSMUST00000138781.2
CDS CCA 72 bp AGCCCTGGCTGGTGGGCACCATCAGAGCCTCCAAGATaGATGGGATGTAGGGCTGGACGTGGTTCCTCACGC +
Preference number: 6 (lower is better)
Translates to: SPGWWAPSEPPR*MGCRAGRGSSR
Trigger: GCGTGAGGAACCACGTCCAGCCCTACATCCCATCCATCTTGGAGGCTCTGATGGTGCCCACCAGCCAGGGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CAA 72 bp CGTGGCAGCTCCGACTTGCAGGTGGGGGCCAGCTTTTaGAGCAGGAAGGGAATGGTGATCTGCAGCAGCGCC +
Preference number: 6 (lower is better)
Translates to: RGSSDLQVGASF*SRKGMVICSSA
Trigger: GGCGCTGCTGCAGATCACCATTCCCTTCCTGCTCAAAAAGCTGGCCCCCACCTGCAAGTCGGAGCTGCCACG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CAA 90 bp TCCTGGAAGCGTGGCAGCTCCGACTTGCAGGTGGGGGCCAGCTTTTaGAGCAGGAAGGGAATGGTGATCTGCAGCAGCGCCTCTCGGAAG +
Preference number: 6 (lower is better)
Translates to: SWKRGSSDLQVGASF*SRKGMVICSSASRK
Trigger: CTTCCGAGAGGCGCTGCTGCAGATCACCATTCCCTTCCTGCTCAAAAAGCTGGCCCCCACCTGCAAGTCGGAGCTGCCACGCTTCCAGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CCA 72 bp CTGGCTGGTGGGCACCATCAGAGCCTCCAAGATGGATaGGATGTAGGGCTGGACGTGGTTCCTCACGCACAC +
Preference number: 6 (lower is better)
Translates to: LAGGHHQSLQDG*DVGLDVVPHAH
Trigger: GTGTGCGTGAGGAACCACGTCCAGCCCTACATCCCATCCATCTTGGAGGCTCTGATGGTGCCCACCAGCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CAA 90 bp GCCTTGGGGAGGATGAAGGCTCGGATCTTGCTGGCCAGATGCTCCTaGGAGGTGATGATCTGGTCCATGTCGGTGCGGATGACTGCCTCC +
Preference number: 6 (lower is better)
Translates to: ALGRMKARILLARCS*EVMIWSMSVRMTAS
Trigger: GGAGGCAGTCATCCGCACCGACATGGACCAGATCATCACCTCCAAGGAGCATCTGGCCAGCAAGATCCGAGCCTTCATCCTCCCCAAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CAA 90 bp CACCGCCGCTGTCACCGCTGTCACCGTACTGTTCGCCCCAGTCGATaGGTGTGCCCTCAGCCAGCAGGTGTAGATTGGGGTCACTATTGT +
Preference number: 6 (lower is better)
Translates to: HRRCHRCHRTVRPSR*VCPQPAGVDWGHYC
Trigger: ACAATAGTGACCCCAATCTACACCTGCTGGCTGAGGGCACACCAATCGACTGGGGCGAACAGTACGGTGACAGCGGTGACAGCGGCGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS TCA 72 bp GCGGATGGCGTCTGTGAATGCAGGGCCCTCCACCTTTaGGTTCTCCGGGATCCCGTTGTTGCAGTGTCGAAC +
Preference number: 6 (lower is better)
Translates to: ADGVCECRALHL*VLRDPVVAVSN
Trigger: GTTCGACACTGCAACAACGGGATCCCGGAGAACTCAAAGGTGGAGGGCCCTGCATTCACAGACGCCATCCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS TCA 72 bp GCTCCTTTGACTGGCGGTACATGCGGATGGCGTCTGTaGATGCAGGGCCCTCCACCTTTGAGTTCTCCGGGA +
Preference number: 6 (lower is better)
Translates to: APLTGGTCGWRL*MQGPPPLSSPG
Trigger: TCCCGGAGAACTCAAAGGTGGAGGGCCCTGCATTCACAGACGCCATCCGCATGTACCGCCAGTCAAAGGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS TCA 72 bp CTGCGGCCTCCTTCACAGCCTGCAGGATGTCCTTCATaGCCGTCTGCAGCACCACCTCCTCGTACGTGTTCT +
Preference number: 6 (lower is better)
Translates to: LRPPSQPAGCPS*PSAAPPPRTCS
Trigger: AGAACACGTACGAGGAGGTGGTGCTGCAGACGGTCATGAAGGACATCCTGCAGGCTGTGAAGGAGGCCGCAG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS GCA 72 bp TGCTTGAACACGGAAGTGCTAGACACGTCGAATCGCTaGTGCAGCCCGTCGAGCCGCAGTGGCTCCATCTTC +
Preference number: 6 (lower is better)
Translates to: CLNTEVLDTSNR*CSPSSRSGSIF
Trigger: GAAGATGGAGCCACTGCGGCTCGACGGGCTGCAGCAGCGATTCGACGTGTCTAGCACTTCCGTGTTCAAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CCA 72 bp CACGTCGAATCGCTGCTGCAGCCCGTCGAGCCGCAGTaGCTCCATCTTCTCATAGCAGCTCTGCATCTTCAG +
Preference number: 6 (lower is better)
Translates to: HVESLLQPVEPQ*LHLLIAALHLQ
Trigger: CTGAAGATGCAGAGCTGCTATGAGAAGATGGAGCCACTGCGGCTCGACGGGCTGCAGCAGCGATTCGACGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CAA 72 bp TGTCACCGCTGTCACCGTACTGTTCGCCCCAGTCGATaGGTGTGCCCTCAGCCAGCAGGTGTAGATTGGGGT +
Preference number: 6 (lower is better)
Translates to: CHRCHRTVRPSR*VCPQPAGVDWG
Trigger: ACCCCAATCTACACCTGCTGGCTGAGGGCACACCAATCGACTGGGGCGAACAGTACGGTGACAGCGGTGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS TCA 72 bp TCCGGGATCCCGTTGTTGCAGTGTCGAACGCAATCCTaGAGCACTGCCTGCCACTTGTCCTGCTCCGCTTCT +
Preference number: 6 (lower is better)
Translates to: SGIPLLQCRTQS*STACHLSCSAS
Trigger: AGAAGCGGAGCAGGACAAGTGGCAGGCAGTGCTTCAGGATTGCGTTCGACACTGCAACAACGGGATCCCGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS GCA 72 bp GGATCTGCACCTCGTTGCCACACAGCATTTCCCAGGTaGCGTACTGCTCCTTTGACTGGCGGTACATGCGGA +
Preference number: 6 (lower is better)
Translates to: GSAPRCHTAFPR*RTAPLTGGTCG
Trigger: TCCGCATGTACCGCCAGTCAAAGGAGCAGTACGGCACCTGGGAAATGCTGTGTGGCAACGAGGTGCAGATCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS GCA 72 bp TTGAACACGGAAGTGCTAGACACGTCGAATCGCTGCTaGAGCCCGTCGAGCCGCAGTGGCTCCATCTTCTCA +
Preference number: 6 (lower is better)
Translates to: LNTEVLDTSNRC*SPSSRSGSIFS
Trigger: TGAGAAGATGGAGCCACTGCGGCTCGACGGGCTGCAGCAGCGATTCGACGTGTCTAGCACTTCCGTGTTCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS GCA 72 bp TCCTTCACAGCCTGCAGGATGTCCTTCATGACCGTCTaGAGCACCACCTCCTCGTACGTGTTCTCCACCAGG +
Preference number: 6 (lower is better)
Translates to: SFTACRMSFMTV*STTSSYVFSTR
Trigger: CCTGGTGGAGAACACGTACGAGGAGGTGGTGCTGCAGACGGTCATGAAGGACATCCTGCAGGCTGTGAAGGA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS GCA 72 bp TGTGCAGAACCATGCTGTCACGGTAGAGGTTGTGTTTaGGCTGCACTGCGGCCTCCTTCACAGCCTGCAGGA +
Preference number: 6 (lower is better)
Translates to: CAEPCCHGRGCV*AALRPPSQPAG
Trigger: TCCTGCAGGCTGTGAAGGAGGCCGCAGTGCAGCGCAAACACAACCTCTACCGTGACAGCATGGTTCTGCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS GCA 72 bp CGCTGTCACCGTACTGTTCGCCCCAGTCGATTGGTGTaGCCTCAGCCAGCAGGTGTAGATTGGGGTCACTAT +
Preference number: 6 (lower is better)
Translates to: RCHRTVRPSRLV*PQPAGVDWGHY
Trigger: ATAGTGACCCCAATCTACACCTGCTGGCTGAGGGCACACCAATCGACTGGGGCGAACAGTACGGTGACAGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CCA 72 bp ATCTTGCTGGCCAGATGCTCCTTGGAGGTGATGATCTaGTCCATGTCGGTGCGGATGACTGCCTCCATGGCC +
Preference number: 6 (lower is better)
Translates to: ILLARCSLEVMI*SMSVRMTASMA
Trigger: GGCCATGGAGGCAGTCATCCGCACCGACATGGACCAGATCATCACCTCCAAGGAGCATCTGGCCAGCAAGAT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CCA 72 bp AGGATGAACCTGGCAAAGTCTTCAAAGATCAGCTCCTaGAAGCGTGGCAGCTCCGACTTGCAGGTGGGGGCC +
Preference number: 6 (lower is better)
Translates to: RMNLAKSSKISS*KRGSSDLQVGA
Trigger: GGCCCCCACCTGCAAGTCGGAGCTGCCACGCTTCCAGGAGCTGATCTTTGAAGACTTTGCCAGGTTCATCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CAA 90 bp ACAGCATTGTCCATTTGCTCTCGCATGTGGATCTGGGCTCGCTGCTaGAACACGGAAGTGCTAGACACGTCGAATCGCTGCTGCAGCCCG +
Preference number: 6 (lower is better)
Translates to: TALSICSRMWIWARC*NTEVLDTSNRCCSP
Trigger: CGGGCTGCAGCAGCGATTCGACGTGTCTAGCACTTCCGTGTTCAAGCAGCGAGCCCAGATCCACATGCGAGAGCAAATGGACAATGCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS TCA 72 bp GTGGCCCGGTGCCCTCGATCTCATGGCGCATGCTATTaGAGAGGGAGACACCATACTGGTCCTCATAGAAGC +
Preference number: 6 (lower is better)
Translates to: VARCPRSHGACY*RGRHHTGPHRS
Trigger: GCTTCTATGAGGACCAGTATGGTGTCTCCCTCTTCAATAGCATGCGCCATGAGATCGAGGGCACCGGGCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028135.15
ENSMUST00000138781.2
CDS GCA 72 bp GATCTTCTCGGTTTTCTCTGCGATGTGCTGGCGCCGTaGGTCATCCAGGTGTGTGGACAGTACGTCTCCCAT +
Preference number: 6 (lower is better)
Translates to: DLLGFLCDVLAP*VIQVCGQYVSH
Trigger: ATGGGAGACGTACTGTCCACACACCTGGATGACGCACGGCGCCAGCACATCGCAGAGAAAACCGAGAAGATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS GCA 72 bp TTGGGGAGGATGAAGGCTCGGATCTTGCTGGCCAGATaGTCCTTGGAGGTGATGATCTGGTCCATGTCGGTG +
Preference number: 6 (lower is better)
Translates to: LGRMKARILLAR*SLEVMIWSMSV
Trigger: CACCGACATGGACCAGATCATCACCTCCAAGGAGCATCTGGCCAGCAAGATCCGAGCCTTCATCCTCCCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS GCA 72 bp CATGCTGTCACGGTAGAGGTTGTGTTTGCGCTGCACTaGGGCCTCCTTCACAGCCTGCAGGATGTCCTTCAT +
Preference number: 6 (lower is better)
Translates to: HAVTVEVVFALH*GLLHSLQDVLH
Trigger: ATGAAGGACATCCTGCAGGCTGTGAAGGAGGCCGCAGTGCAGCGCAAACACAACCTCTACCGTGACAGCATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CCA 72 bp TCTGTGAGGATCTTCTCGGTTTTCTCTGCGATGTGCTaGCGCCGTGCGTCATCCAGGTGTGTGGACAGTACG +
Preference number: 6 (lower is better)
Translates to: SVRIFSVFSAMC*RRASSRCVDST
Trigger: CGTACTGTCCACACACCTGGATGACGCACGGCGCCAGCACATCGCAGAGAAAACCGAGAAGATCCTCACAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CCA 72 bp AACCTTGTAGCCCGCGCTGTTGATGACGGCCCGGGGTaGTATCTGCCGCTCATAGGCCACTTTGTTCTCATA +
Preference number: 6 (lower is better)
Translates to: NLVARAVDDGPG*YLPLIGHFVLI
Trigger: TATGAGAACAAAGTGGCCTATGAGCGGCAGATACCACCCCGGGCCGTCATCAACAGCGCGGGCTACAAGGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CCA 72 bp TCTTTGAAGAAGACATCCCGCACCTCGGTGAAGCCCTaGCTGGTGGGCACCATCAGAGCCTCCAAGATGGAT +
Preference number: 6 (lower is better)
Translates to: SLKKTSRTSVKP*LVGTIRASKMD
Trigger: ATCCATCTTGGAGGCTCTGATGGTGCCCACCAGCCAGGGCTTCACCGAGGTGCGGGATGTCTTCTTCAAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CAA 72 bp CGCTGCAGCTTACACAGCACGTCCTCAAAGTGCACCTaGGCCTGTTCAAATACCAGGCGGTACACAGCGTCC +
Preference number: 6 (lower is better)
Translates to: RCSLHSTSSKCT*ACSNTRRYTAS
Trigger: GGACGCTGTGTACCGCCTGGTATTTGAACAGGCCAAGGTGCACTTTGAGGACGTGCTGTGTAAGCTGCAGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CAA 72 bp AGGATGAAGGCTCGGATCTTGCTGGCCAGATGCTCCTaGGAGGTGATGATCTGGTCCATGTCGGTGCGGATG +
Preference number: 6 (lower is better)
Translates to: RMKARILLARCS*EVMIWSMSVRM
Trigger: CATCCGCACCGACATGGACCAGATCATCACCTCCAAGGAGCATCTGGCCAGCAAGATCCGAGCCTTCATCCT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CAA 90 bp ATGCCACCCTCGTTGATCACGTTCAGATTCATGTCTGTGACCTCTTaGAAGAAGACATCCCGCACCTCGGTGAAGCCCTGGCTGGTGGGC +
Preference number: 6 (lower is better)
Translates to: MPPSLITFRFMSVTS*KKTSRTSVKPWLVG
Trigger: GCCCACCAGCCAGGGCTTCACCGAGGTGCGGGATGTCTTCTTCAAAGAGGTCACAGACATGAATCTGAACGTGATCAACGAGGGTGGCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CCA 72 bp CGTATTTCTTCAGCACGCGCTCTAGAATCCGCTGGATaGATTTGCACAGCTCCTCCTTGGTGGGTCCCTTCC +
Preference number: 6 (lower is better)
Translates to: RISSARALESAG*ICTAPPWWVPS
Trigger: GGAAGGGACCCACCAAGGAGGAGCTGTGCAAATCCATCCAGCGGATTCTAGAGCGCGTGCTGAAGAAATACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CAA 72 bp TCCATTTGCTCTCGCATGTGGATCTGGGCTCGCTGCTaGAACACGGAAGTGCTAGACACGTCGAATCGCTGC +
Preference number: 6 (lower is better)
Translates to: SICSRMWIWARC*NTEVLDTSNRC
Trigger: GCAGCGATTCGACGTGTCTAGCACTTCCGTGTTCAAGCAGCGAGCCCAGATCCACATGCGAGAGCAAATGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CAA 72 bp CAGTCGATTGGTGTGCCCTCAGCCAGCAGGTGTAGATaGGGGTCACTATTGTGCAGAACCATGCTGTCACGG +
Preference number: 6 (lower is better)
Translates to: QSIGVPSASRCR*GSLLCRTMLSR
Trigger: CCGTGACAGCATGGTTCTGCACAATAGTGACCCCAATCTACACCTGCTGGCTGAGGGCACACCAATCGACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS TCA 72 bp GCAGCACCACCTCCTCGTACGTGTTCTCCACCAGGATaGACCTGGCAAAGTCTTCAAAGATCAGCTCCTGGA +
Preference number: 6 (lower is better)
Translates to: AAPPPRTCSPPG*TWQSLQRSAPG
Trigger: TCCAGGAGCTGATCTTTGAAGACTTTGCCAGGTTCATCCTGGTGGAGAACACGTACGAGGAGGTGGTGCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS GCA 72 bp TTGTCCATTTGCTCTCGCATGTGGATCTGGGCTCGCTaGTTGAACACGGAAGTGCTAGACACGTCGAATCGC +
Preference number: 6 (lower is better)
Translates to: LSICSRMWIWAR*LNTEVLDTSNR
Trigger: GCGATTCGACGTGTCTAGCACTTCCGTGTTCAAGCAGCGAGCCCAGATCCACATGCGAGAGCAAATGGACAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CCA 72 bp AGTCGATTGGTGTGCCCTCAGCCAGCAGGTGTAGATTaGGGTCACTATTGTGCAGAACCATGCTGTCACGGT +
Preference number: 6 (lower is better)
Translates to: SRLVCPQPAGVD*GHYCAEPCCHG
Trigger: ACCGTGACAGCATGGTTCTGCACAATAGTGACCCCAATCTACACCTGCTGGCTGAGGGCACACCAATCGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CAA 72 bp TCTTGGTGCAGGAGGGTTTCGAAGGTGTACACAGCATaGTCCATTTGCTCTCGCATGTGGATCTGGGCTCGC +
Preference number: 6 (lower is better)
Translates to: SWCRRVSKVYTA*SICSRMWIWAR
Trigger: GCGAGCCCAGATCCACATGCGAGAGCAAATGGACAATGCTGTGTACACCTTCGAAACCCTCCTGCACCAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS GCA 72 bp GCAGCGCCTCTCGGAAGAATCTCTTGCGCACAGAACTaGTGTCATAGTCGTATTTCTTCAGCACGCGCTCTA +
Preference number: 6 (lower is better)
Translates to: AAPLGRISCAQN*CHSRISSARAL
Trigger: TAGAGCGCGTGCTGAAGAAATACGACTATGACAGCAGTTCTGTGCGCAAGAGATTCTTCCGAGAGGCGCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS GCA 72 bp GCAGGTGTAGATTGGGGTCACTATTGTGCAGAACCATaGTGTCACGGTAGAGGTTGTGTTTGCGCTGCACTG +
Preference number: 6 (lower is better)
Translates to: AGVDWGHYCAEP*CHGRGCVCAAL
Trigger: CAGTGCAGCGCAAACACAACCTCTACCGTGACAGCATGGTTCTGCACAATAGTGACCCCAATCTACACCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CCA 72 bp TACACAGCATTGTCCATTTGCTCTCGCATGTGGATCTaGGCTCGCTGCTTGAACACGGAAGTGCTAGACACG +
Preference number: 6 (lower is better)
Translates to: YTALSICSRMWI*ARCLNTEVLDT
Trigger: CGTGTCTAGCACTTCCGTGTTCAAGCAGCGAGCCCAGATCCACATGCGAGAGCAAATGGACAATGCTGTGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS TCA 72 bp CACCATACTGGTCCTCATAGAAGCGAAGGAACTCTGTaGGGATCTTCTCGGTTTTCTCTGCGATGTGCTGGC +
Preference number: 6 (lower is better)
Translates to: HHTGPHRSEGTL*GSSRFSLRCAG
Trigger: GCCAGCACATCGCAGAGAAAACCGAGAAGATCCTCACAGAGTTCCTTCGCTTCTATGAGGACCAGTATGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CAA 72 bp TCGTTGATCACGTTCAGATTCATGTCTGTGACCTCTTaGAAGAAGACATCCCGCACCTCGGTGAAGCCCTGG +
Preference number: 6 (lower is better)
Translates to: SLITFRFMSVTS*KKTSRTSVKPW
Trigger: CCAGGGCTTCACCGAGGTGCGGGATGTCTTCTTCAAAGAGGTCACAGACATGAATCTGAACGTGATCAACGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CAA 72 bp TCCATGTACTCGCCCAGCTTGTCAATGCCACCCTCGTaGATCACGTTCAGATTCATGTCTGTGACCTCTTTG +
Preference number: 6 (lower is better)
Translates to: SMYSPSLSMPPS*ITFRFMSVTSL
Trigger: CAAAGAGGTCACAGACATGAATCTGAACGTGATCAACGAGGGTGGCATTGACAAGCTGGGCGAGTACATGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CAA 90 bp GATAGCTTCTCCATGTACTCGCCCAGCTTGTCAATGCCACCCTCGTaGATCACGTTCAGATTCATGTCTGTGACCTCTTTGAAGAAGACA +
Preference number: 6 (lower is better)
Translates to: DSFSMYSPSLSMPPS*ITFRFMSVTSLKKT
Trigger: TGTCTTCTTCAAAGAGGTCACAGACATGAATCTGAACGTGATCAACGAGGGTGGCATTGACAAGCTGGGCGAGTACATGGAGAAGCTATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028135.15
CDS CCA 72 bp AGGCTGAAGCGGTTTCTCCACTTCTTATTGTCTTCCTaGTACTGGAAAAGGTTTCCGGAGAAGATGATGCGT +
Preference number: 6 (lower is better)
Translates to: RLKRFLHFLLSS*YWKRFPEKMMR
Trigger: ACGCATCATCTTCTCCGGAAACCTTTTCCAGTACCAGGAAGACAATAAGAAGTGGAGAAACCGCTTCAGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028135.15
ENSMUST00000138781.2
CDS CCA 72 bp AAGCGGTTTCTCCACTTCTTATTGTCTTCCTGGTACTaGAAAAGGTTTCCGGAGAAGATGATGCGTTCATCC +
Preference number: 6 (lower is better)
Translates to: KRFLHFLLSSWY*KRFPEKMMRSS
Trigger: GGATGAACGCATCATCTTCTCCGGAAACCTTTTCCAGTACCAGGAAGACAATAAGAAGTGGAGAAACCGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028135.15
ENSMUST00000138781.2