RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NHSL2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000079481

Ensembl transcript IDs: ENSMUST00000101339.8, ENSMUST00000124279.6, ENSMUST00000144753.2

Found 533 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCAAATCGCAGGGCCAAGGCAAGGGTAAGGCACTGGCGGGGGCCTTaGGAGTGGGCGTCTCCCCAATCGCCTCACCCTAGTCCTGGCCCT +
Preference number: 1 (lower is better)
Translates to: ANRRAKARVRHWRGP*EWASPQSPHPSPGP
Trigger: AGGGCCAGGACTAGGGTGAGGCGATTGGGGAGACGCCCACTCTCAAGGCCCCCGCCAGTGCCTTACCCTTGCCTTGGCCCTGCGATTTGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 90 bp CTGCCCATGGCCTTGACTCCTTTGTGGCTGAGCTGTTGGTACCAGTaGAGTTCACGGGTGTTAGGACTGGAGGACAAGTTGGAGGCCCAT +
Preference number: 1 (lower is better)
Translates to: LPMALTPLWLSCWYQ*SSRVLGLEDKLEAH
Trigger: ATGGGCCTCCAACTTGTCCTCCAGTCCTAACACCCGTGAACTGCACTGGTACCAACAGCTCAGCCACAAAGGAGTCAAGGCCATGGGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 90 bp ATCTGGCATTTGTCTTCAGGGCATAGTGGGCCCAGGAGCACCGAGTaGAGCACTAACCCAACACAACTGTACCAGGGCTGCACAGCAGGA +
Preference number: 1 (lower is better)
Translates to: IWHLSSGHSGPRSTE*STNPTQLYQGCTAG
Trigger: TCCTGCTGTGCAGCCCTGGTACAGTTGTGTTGGGTTAGTGCTGCACTCGGTGCTCCTGGGCCCACTATGCCCTGAAGACAAATGCCAGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 90 bp CGGGAATCCAGGATACAGTCCCACCCCGGGGGTGGGCGTTACCCTTaGCTTTCAGTGCAGGTCATCAGTCTGTACATTCTCATCTGGCAT +
Preference number: 1 (lower is better)
Translates to: RESRIQSHPGGGRYP*LSVQVISLYILIWH
Trigger: ATGCCAGATGAGAATGTACAGACTGATGACCTGCACTGAAAGGCAAGGGTAACGCCCACCCCCGGGGTGGGACTGTATCCTGGATTCCCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 90 bp GTGTATCAGGCTTGGTGGCAGGTACCTGTTCATGCTGAGGCATCGTaGCAGCCTCACCCACTTTACACATGGGGCTGGTCACAGAAAAGA +
Preference number: 1 (lower is better)
Translates to: VYQAWWQVPVHAEAS*QPHPLYTWGWSQKR
Trigger: TCTTTTCTGTGACCAGCCCCATGTGTAAAGTGGGTGAGGCTGGCACGATGCCTCAGCATGAACAGGTACCTGCCACCAAGCCTGATACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 90 bp TCTACCTGTGGGTTCTACTCACTTAGGTCAGTGTATCAGGCTTGGTaGCAGGTACCTGTTCATGCTGAGGCATCGTGCCAGCCTCACCCA +
Preference number: 1 (lower is better)
Translates to: STCGFYSLRSVYQAW*QVPVHAEASCQPHP
Trigger: TGGGTGAGGCTGGCACGATGCCTCAGCATGAACAGGTACCTGCCACCAAGCCTGATACACTGACCTAAGTGAGTAGAACCCACAGGTAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 90 bp AATCCTCCAAAGACTGGGTTTGTGATCTCTCCTACTTACTGCTACTaGAACGGGAATCCAGGATACAGTCCCACCCCGGGGGTGGGCGTT +
Preference number: 1 (lower is better)
Translates to: NPPKTGFVISPTYCY*NGNPGYSPTPGVGV
Trigger: AACGCCCACCCCCGGGGTGGGACTGTATCCTGGATTCCCGTTCCAGTAGCAGTAAGTAGGAGAGATCACAAACCCAGTCTTTGGAGGATT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR TCA 90 bp GCAGCACTAACCCAACACAACTGTACCAGGGCTGCACAGCAGGACTaGCCAGTTCTTAGTCCTCACTCTGCTTTTGAGCTCCTCTTGGGT +
Preference number: 1 (lower is better)
Translates to: AALTQHNCTRAAQQD*PVLSPHSAFELLLG
Trigger: ACCCAAGAGGAGCTCAAAAGCAGAGTGAGGACTAAGAACTGGTCAGTCCTGCTGTGCAGCCCTGGTACAGTTGTGTTGGGTTAGTGCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 90 bp GCTGGCCTCAACCTCACAGAGATCTGCCTGGCTCCATCTTCCAGGTaGTGGGATCAAAACTGCATCACACATTCCTGCCTGACTCTTGTT +
Preference number: 1 (lower is better)
Translates to: AGLNLTEICLAPSSR*WDQNCITHSCLTLV
Trigger: AACAAGAGTCAGGCAGGAATGTGTGATGCAGTTTTGATCCCAGCACCTGGAAGATGGAGCCAGGCAGATCTCTGTGAGGTTGAGGCCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 90 bp TGTTGGAATCCTCCAAAGACTGGGTTTGTGATCTCTCCTACTTACTaGTACTGGAACGGGAATCCAGGATACAGTCCCACCCCGGGGGTG +
Preference number: 1 (lower is better)
Translates to: CWNPPKTGFVISPTY*YWNGNPGYSPTPGV
Trigger: CACCCCCGGGGTGGGACTGTATCCTGGATTCCCGTTCCAGTAGCAGTAAGTAGGAGAGATCACAAACCCAGTCTTTGGAGGATTCCAACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 90 bp AAGCTAACAGGAATGGATTGGCTGCCCATGGCCTTGACTCCTTTGTaGCTGAGCTGTTGGTACCAGTGCAGTTCACGGGTGTTAGGACTG +
Preference number: 1 (lower is better)
Translates to: KLTGMDWLPMALTPL*LSCWYQCSSRVLGL
Trigger: CAGTCCTAACACCCGTGAACTGCACTGGTACCAACAGCTCAGCCACAAAGGAGTCAAGGCCATGGGCAGCCAATCCATTCCTGTTAGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 90 bp TCTTCTACCTGTGGGTTCTACTCACTTAGGTCAGTGTATCAGGCTTaGTGGCAGGTACCTGTTCATGCTGAGGCATCGTGCCAGCCTCAC +
Preference number: 1 (lower is better)
Translates to: SSTCGFYSLRSVYQA*WQVPVHAEASCQPH
Trigger: GTGAGGCTGGCACGATGCCTCAGCATGAACAGGTACCTGCCACCAAGCCTGATACACTGACCTAAGTGAGTAGAACCCACAGGTAGAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR TCA 90 bp TGGAGTATACAGCATGAGCTGGGCACAGATCCTGGCTACCTATGTTaGCAGACACTCGAGAGACCTCAAGGCGTGCATGCGAGTTACCTT +
Preference number: 1 (lower is better)
Translates to: WSIQHELGTDPGYLC*QTLERPQGVHASYL
Trigger: AAGGTAACTCGCATGCACGCCTTGAGGTCTCTCGAGTGTCTGTCAACATAGGTAGCCAGGATCTGTGCCCAGCTCATGCTGTATACTCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 90 bp GGCCTCAACCTCACAGAGATCTGCCTGGCTCCATCTTCCAGGTGCTaGGATCAAAACTGCATCACACATTCCTGCCTGACTCTTGTTTCA +
Preference number: 1 (lower is better)
Translates to: GLNLTEICLAPSSRC*DQNCITHSCLTLVS
Trigger: TGAAACAAGAGTCAGGCAGGAATGTGTGATGCAGTTTTGATCCCAGCACCTGGAAGATGGAGCCAGGCAGATCTCTGTGAGGTTGAGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 90 bp ATCCTGGCTACCTATGTTGACAGACACTCGAGAGACCTCAAGGCGTaGATGCGAGTTACCTTGGCTGAGCTTGGTTCATTAGCTAATGGG +
Preference number: 1 (lower is better)
Translates to: ILATYVDRHSRDLKA*MRVTLAELGSLANG
Trigger: CCCATTAGCTAATGAACCAAGCTCAGCCAAGGTAACTCGCATGCACGCCTTGAGGTCTCTCGAGTGTCTGTCAACATAGGTAGCCAGGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 90 bp ACAAAGGGCCATCAAGGCCTCTTCAAGGAAGTAGATAATCAACAGTaGGAACTGGTACCCTCTGTCCCCAGGCCTGATTTAGAAGGTCCC +
Preference number: 1 (lower is better)
Translates to: TKGHQGLFKEVDNQQ*ELVPSVPRPDLEGP
Trigger: GGGACCTTCTAAATCAGGCCTGGGGACAGAGGGTACCAGTTCCCACTGTTGATTATCTACTTCCTTGAAGAGGCCTTGATGGCCCTTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 90 bp CAGAACTCTCTCTGGAGGAAAGTCACACTGTGGTTGAGGAGGCCTTaGTGTCTTTCTGTGTCTTCACAAAGGGCCATCAAGGCCTCTTCA +
Preference number: 1 (lower is better)
Translates to: QNSLWRKVTLWLRRP*CLSVSSQRAIKASS
Trigger: TGAAGAGGCCTTGATGGCCCTTTGTGAAGACACAGAAAGACACCAAGGCCTCCTCAACCACAGTGTGACTTTCCTCCAGAGAGAGTTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 90 bp ATTAGTGCACGCCTACAGAACTCTCTCTGGAGGAAAGTCACACTGTaGTTGAGGAGGCCTTGGTGTCTTTCTGTGTCTTCACAAAGGGCC +
Preference number: 1 (lower is better)
Translates to: ISARLQNSLWRKVTL*LRRPWCLSVSSQRA
Trigger: GGCCCTTTGTGAAGACACAGAAAGACACCAAGGCCTCCTCAACCACAGTGTGACTTTCCTCCAGAGAGAGTTCTGTAGGCGTGCACTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR TCA 90 bp GCAATACAAATCCTGACTGGGCAGGGATGCTGTCCTGCCCAGGAATaGCACAGAGGAGTTCCTTTAAATGGTTCCATAGGAGAGGAGTCA +
Preference number: 1 (lower is better)
Translates to: AIQILTGQGCCPAQE*HRGVPLNGSIGEES
Trigger: TGACTCCTCTCCTATGGAACCATTTAAAGGAACTCCTCTGTGTCATTCCTGGGCAGGACAGCATCCCTGCCCAGTCAGGATTTGTATTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 90 bp AGCACTGTATGTTATGCACACACTCGGGTCCAATTCACAGCCAGCTaGAGAAAACACACACAGCTTTCCAATGTTTGCAGCCATGGGTGC +
Preference number: 1 (lower is better)
Translates to: STVCYAHTRVQFTAS*RKHTQLSNVCSHGC
Trigger: GCACCCATGGCTGCAAACATTGGAAAGCTGTGTGTGTTTTCTGCAGCTGGCTGTGAATTGGACCCGAGTGTGTGCATAACATACAGTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 90 bp GAGTCCACATGCAATACAAATCCTGACTGGGCAGGGATGCTGTCCTaGCCAGGAATGACACAGAGGAGTTCCTTTAAATGGTTCCATAGG +
Preference number: 1 (lower is better)
Translates to: ESTCNTNPDWAGMLS*PGMTQRSSFKWFHR
Trigger: CCTATGGAACCATTTAAAGGAACTCCTCTGTGTCATTCCTGGGCAGGACAGCATCCCTGCCCAGTCAGGATTTGTATTGCATGTGGACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 90 bp AATCAACCCCATGCCGTAATTAGTGCACGCCTACAGAACTCTCTCTaGAGGAAAGTCACACTGTGGTTGAGGAGGCCTTGGTGTCTTTCT +
Preference number: 1 (lower is better)
Translates to: NQPHAVISARLQNSL*RKVTLWLRRPWCLS
Trigger: AGAAAGACACCAAGGCCTCCTCAACCACAGTGTGACTTTCCTCCAGAGAGAGTTCTGTAGGCGTGCACTAATTACGGCATGGGGTTGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 90 bp GTGTGTTGGGTTGGTTGGAGGAATGTAATGACACACTCTAGGTCATaGGGACTCAGGAGGCAGGGGACATTGGCACAAATATTTCCTGCA +
Preference number: 1 (lower is better)
Translates to: VCWVGWRNVMTHSRS*GLRRQGTLAQIFPA
Trigger: TGCAGGAAATATTTGTGCCAATGTCCCCTGCCTCCTGAGTCCCCATGACCTAGAGTGTGTCATTACATTCCTCCAACCAACCCAACACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 90 bp ACCCTTCTCTCTGCCATTCCCTTCCTTAACCACTTTCCTGAGATCTaGTCCCGAAGCAGAGGACCAATGAGAGCACTGTATGTTATGCAC +
Preference number: 1 (lower is better)
Translates to: TLLSAIPFLNHFPEI*SRSRGPMRALYVMH
Trigger: GTGCATAACATACAGTGCTCTCATTGGTCCTCTGCTTCGGGACCAGATCTCAGGAAAGTGGTTAAGGAAGGGAATGGCAGAGAGAAGGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 90 bp GTCTTCTCAGCACTCAGTGGAGTTTTATTTCAGTTTCAGCCATGTTaGCTTGCTGGAGTGTGGGCAGTTGAGCTAAGAGCTTGCTTCTCA +
Preference number: 1 (lower is better)
Translates to: VFSALSGVLFQFQPC*LAGVWAVELRACFS
Trigger: TGAGAAGCAAGCTCTTAGCTCAACTGCCCACACTCCAGCAAGGCAACATGGCTGAAACTGAAATAAAACTCCACTGAGTGCTGAGAAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 90 bp ATAGTGATGCAGAAATGTTCTAAACATCCCGGGCCCACAGAGTTTTaGAGAGGAAAACAAGGGTTCAGGCAACTGAAACCACCTCAAGCG +
Preference number: 1 (lower is better)
Translates to: IVMQKCSKHPGPTEF*RGKQGFRQLKPPQA
Trigger: CGCTTGAGGTGGTTTCAGTTGCCTGAACCCTTGTTTTCCTCTGCAAAACTCTGTGGGCCCGGGATGTTTAGAACATTTCTGCATCACTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 90 bp CAATTCACAGCCAGCTGCAGAAAACACACACAGCTTTCCAATGTTTaGAGCCATGGGTGCACACAGTGTGAGAACTGTGAATCTGAACTC +
Preference number: 1 (lower is better)
Translates to: QFTASCRKHTQLSNV*SHGCTQCENCESEL
Trigger: GAGTTCAGATTCACAGTTCTCACACTGTGTGCACCCATGGCTGCAAACATTGGAAAGCTGTGTGTGTTTTCTGCAGCTGGCTGTGAATTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 90 bp AAGAATGGCCAGTGCCTGATGACTTTGGAAAAGAAGGGGTCATTGTaGTTGTTCTGGAAGTCTTTCCACATCTGCTGTCTTCCACCACAG +
Preference number: 1 (lower is better)
Translates to: KNGQCLMTLEKKGSL*LFWKSFHICCLPPQ
Trigger: CTGTGGTGGAAGACAGCAGATGTGGAAAGACTTCCAGAACAACCACAATGACCCCTTCTTTTCCAAAGTCATCAGGCACTGGCCATTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 90 bp AACTGTGAATCTGAACTCCAGTTCCTGAAAGTGGGAGGGGTAGGATaGGAGCAGGATAGAGTTAAGAAAACAGGAAGTGGTGTGTTGGGT +
Preference number: 1 (lower is better)
Translates to: NCESELQFLKVGGVG*EQDRVKKTGSGVLG
Trigger: ACCCAACACACCACTTCCTGTTTTCTTAACTCTATCCTGCTCCCATCCTACCCCTCCCACTTTCAGGAACTGGAGTTCAGATTCACAGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR TCA 90 bp CTTCTTTCCCGCTCCTCCCCCTTCTTCTCTCTCATATGTTGCTCTTaGTGGTTCCAAGATCACACTTTGAGAACCAGTGGCCTATATTTG +
Preference number: 1 (lower is better)
Translates to: LLSRSSPFFSLICCS*WFQDHTLRTSGLYL
Trigger: CAAATATAGGCCACTGGTTCTCAAAGTGTGATCTTGGAACCATCAAGAGCAACATATGAGAGAGAAGAAGGGGGAGGAGCGGGAAAGAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR TCA 90 bp GGCTCTCTTCTAGTTTGTGTTGGAATCCTCCAAAGACTGGGTTTGTaGTCTCTCCTACTTACTGCTACTGGAACGGGAATCCAGGATACA +
Preference number: 1 (lower is better)
Translates to: GSLLVCVGILQRLGL*SLLLTATGTGIQDT
Trigger: TGTATCCTGGATTCCCGTTCCAGTAGCAGTAAGTAGGAGAGATCACAAACCCAGTCTTTGGAGGATTCCAACACAAACTAGAAGAGAGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 90 bp CAGTGCCTGATGACTTTGGAAAAGAAGGGGTCATTGTGGTTGTTCTaGAAGTCTTTCCACATCTGCTGTCTTCCACCACAGCTAACTGAA +
Preference number: 1 (lower is better)
Translates to: QCLMTLEKKGSLWLF*KSFHICCLPPQLTE
Trigger: TTCAGTTAGCTGTGGTGGAAGACAGCAGATGTGGAAAGACTTCCAGAACAACCACAATGACCCCTTCTTTTCCAAAGTCATCAGGCACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 90 bp GGGAAACAGGGGAATACAAATAGCTTGAAGCAGAGGCTGACTACCTaGGGCCAATTTGAGTTCCCTCCAACTTACTGTCTATTCTACCTA +
Preference number: 1 (lower is better)
Translates to: GKQGNTNSLKQRLTT*GQFEFPPTYCLFYL
Trigger: TAGGTAGAATAGACAGTAAGTTGGAGGGAACTCAAATTGGCCCCAGGTAGTCAGCCTCTGCTTCAAGCTATTTGTATTCCCCTGTTTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 90 bp AGTCACCAAGGTGAGGACATTGATTTAAGGGCTGGTAATATCAAATaGGACCACGGCAACCACCACTGTCCCCTTTGTTGTTGTTGTTGT +
Preference number: 1 (lower is better)
Translates to: SHQGEDIDLRAGNIK*DHGNHHCPLCCCCC
Trigger: ACAACAACAACAACAAAGGGGACAGTGGTGGTTGCCGTGGTCCCATTTGATATTACCAGCCCTTAAATCAATGTCCTCACCTTGGTGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 90 bp CGCTTTGTAATATCAGCCCACAGAGGGCTCTCTTCTAGTTTGTGTTaGAATCCTCCAAAGACTGGGTTTGTGATCTCTCCTACTTACTGC +
Preference number: 1 (lower is better)
Translates to: RFVISAHRGLSSSLC*NPPKTGFVISPTYC
Trigger: GCAGTAAGTAGGAGAGATCACAAACCCAGTCTTTGGAGGATTCCAACACAAACTAGAAGAGAGCCCTCTGTGGGCTGATATTACAAAGCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR TCA 90 bp TGTTGGTATTTCTTCACCAGCACACATATGGAGGAGGAATGGCTTTaGGGTGACTGGTACGGTGACTACAATGTTGTGTTTGCATGCAGA +
Preference number: 1 (lower is better)
Translates to: CWYFFTSTHMEEEWL*GDWYGDYNVVFACR
Trigger: TCTGCATGCAAACACAACATTGTAGTCACCGTACCAGTCACCTCAAAGCCATTCCTCCTCCATATGTGTGCTGGTGAAGAAATACCAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 90 bp CAGCCATGTTGCCTTGCTGGAGTGTGGGCAGTTGAGCTAAGAGCTTaGTTCTCATTGATAAGGATTGTCAAAATGGAGATCTGTTTGTTT +
Preference number: 1 (lower is better)
Translates to: QPCCLAGVWAVELRA*FSLIRIVKMEICLF
Trigger: AAACAAACAGATCTCCATTTTGACAATCCTTATCAATGAGAAGCAAGCTCTTAGCTCAACTGCCCACACTCCAGCAAGGCAACATGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR TCA 90 bp CAGGTGAGCTCCATTGTTGTGTTGTCCTCTCTGCTGTTCAGAGTGTaGGTTAACATCAAAGACATCGATTCTTTTGTCATTCCTGTGGTT +
Preference number: 1 (lower is better)
Translates to: QVSSIVVLSSLLFRV*VNIKDIDSFVIPVV
Trigger: AACCACAGGAATGACAAAAGAATCGATGTCTTTGATGTTAACTCACACTCTGAACAGCAGAGAGGACAACACAACAATGGAGCTCACCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR TCA 90 bp AAGCAGGTATATGGAAATCAGGAGCTCTTGCTTTGCTTACAAAACTaGGTTGACAAGAATGGCCAGTGCCTGATGACTTTGGAAAAGAAG +
Preference number: 1 (lower is better)
Translates to: KQVYGNQELLLCLQN*VDKNGQCLMTLEKK
Trigger: CTTCTTTTCCAAAGTCATCAGGCACTGGCCATTCTTGTCAACTCAGTTTTGTAAGCAAAGCAAGAGCTCCTGATTTCCATATACCTGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR TCA 90 bp TCTTCTCTCTCATATGTTGCTCTTGATGGTTCCAAGATCACACTTTaGGAACCAGTGGCCTATATTTGGGCCTTTACTGAACAAAAGTAT +
Preference number: 1 (lower is better)
Translates to: SSLSYVALDGSKITL*EPVAYIWAFTEQKY
Trigger: ATACTTTTGTTCAGTAAAGGCCCAAATATAGGCCACTGGTTCTCAAAGTGTGATCTTGGAACCATCAAGAGCAACATATGAGAGAGAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 90 bp ATTAATCCCATTTCCACAAACATGTTAATGTACAATATGAATGATTaGTACAGGCCTTCTCAGAGGCTTTTAAGTAGCTTTATCTCAGAG +
Preference number: 1 (lower is better)
Translates to: INPISTNMLMYNMND*YRPSQRLLSSFISE
Trigger: CTCTGAGATAAAGCTACTTAAAAGCCTCTGAGAAGGCCTGTACCAATCATTCATATTGTACATTAACATGTTTGTGGAAATGGGATTAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR TCA 90 bp AAAATCAAATCTGCTGGAGCCCTCCTGGGGAACAGTCACCAAGGTGAGGACATTGGGCAGACCCCCAACTaGCTGTTGAAGGGCTCAGGC +
Preference number: 2 (lower is better)
Translates to: KIKSAGALLGNSHQGEDIGQTPN*LLKGSG
Trigger: GCCTGAGCCCTTCAACAGTCAGTTGGGGGTCTGCCC...AATGTCCTCACCTTGGTGACTGTTCCCCAGGAGGGCTCCAGCAGATTTGATTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR GCA 90 bp TGTGAGAACTGTGAATCTGAACTCCAGTTCCTGAAAGTGGGAGGGGTAGGATGGCTGGAAGGGCAGAAGTaGCGTGGGCAGGGGTACAGG +
Preference number: 2 (lower is better)
Translates to: CENCESELQFLKVGGVGWLEGQK*RGQGYR
Trigger: CCTGTACCCCTGCCCACGGCACTTCTGCCCTTCCAG...CCATCCTACCCCTCCCACTTTCAGGAACTGGAGTTCAGATTCACAGTTCTCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR GCA 90 bp TACCTGTTCATGCTGAGGCATCGTGCCAGCCTCACCCACTTTACACATGGGGCTTTTCTGGCCTCTTGCTaGATCCTCCAGGAGAGTGAG +
Preference number: 2 (lower is better)
Translates to: YLFMLRHRASLTHFTHGAFLASC*ILQESE
Trigger: CTCACTCTCCTGGAGGATGCAGCAAGAGGCCAGAAA...AGCCCCATGTGTAAAGTGGGTGAGGCTGGCACGATGCCTCAGCATGAACAGGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CCA 90 bp AAAATCAAATCTGCTGGAGCCCTCCTGGGGAACAGTCACCAAGGTGAGGACATTAGGGCAGAAGTGCCGTaGGCAGGGGTACAGGAGGAA +
Preference number: 2 (lower is better)
Translates to: KIKSAGALLGNSHQGEDIRAEVP*AGVQEE
Trigger: TTCCTCCTGTACCCCTGCCCACGGCACTTCTGCCCT...AATGTCCTCACCTTGGTGACTGTTCCCCAGGAGGGCTCCAGCAGATTTGATTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CCA 90 bp TACCTGTTCATGCTGAGGCATCGTGCCAGCCTCACCCACTTTACACATGGGGCTAGTGAGCAAGGAATCTaGAAGGGCAGAAGTGCCGTG +
Preference number: 2 (lower is better)
Translates to: YLFMLRHRASLTHFTHGASEQGI*KGRSAV
Trigger: CACGGCACTTCTGCCCTTCCAGATTCCTTGCTCACT...AGCCCCATGTGTAAAGTGGGTGAGGCTGGCACGATGCCTCAGCATGAACAGGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CAA 90 bp AATGGATTGGCTGCCCATGGCCTTGACTCCTTTGTGGCTGAGCTGTaGGTACCAGTGCAGTTCACGGGTGTTAGGACTGGAGGACAAGTT +
Preference number: 2 (lower is better)
Translates to: NGLAAHGLDSFVAEL*VPVQFTGVRTGGQV
Trigger: AACTTGTCCTCCAGTCCTAACACCCGTGAACTGCACTGGTACCAACAGCTCAGCCACAAAGGAGTCAAGGCCATGGGCAGCCAATCCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CAA 90 bp TGCCTTTCAGTGCAGGTCATCAGTCTGTACATTCTCATCTGGCATTaGTCTTCAGGGCATAGTGGGCCCAGGAGCACCGAGTGCAGCACT +
Preference number: 2 (lower is better)
Translates to: CLSVQVISLYILIWH*SSGHSGPRSTECST
Trigger: AGTGCTGCACTCGGTGCTCCTGGGCCCACTATGCCCTGAAGACAAATGCCAGATGAGAATGTACAGACTGATGACCTGCACTGAAAGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR TCA 90 bp AACCTTGGGGTCATGAAGCTAACAGGAATGGATTGGCTGCCCATGGCCTTGACTCATCCTCCAGGAGAGTaGGCAAGGAATCTGGAAGGG +
Preference number: 2 (lower is better)
Translates to: NLGVMKLTGMDWLPMALTHPPGE*ARNLEG
Trigger: CCCTTCCAGATTCCTTGCTCACTCTCCTGGAGGATG...AGTCAAGGCCATGGGCAGCCAATCCATTCCTGTTAGCTTCATGACCCCAAGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR TCA 90 bp GGACTGGAGGACAAGTTGGAGGCCCATGCAGGCCAGGAGTACAGGCAAAGGGGATCCACCACTCACATTTaGACCACAAATCAATACCCA +
Preference number: 2 (lower is better)
Translates to: GLEDKLEAHAGQEYRQRGSTTHI*TTNQYP
Trigger: TGGGTATTGATTTGTGGTTCAAATGTGAGTGGTGGA...TCCCCTTTGCCTGTACTCCTGGCCTGCATGGGCCTCCAACTTGTCCTCCAGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR TCA 90 bp TACCTGTTCATGCTGAGGCATCGTGCCAGCCTCACCCACTTTACACATGGGGCTCTCAGACTCATTGTGTaGCCTTCAGTGAGCCACTTG +
Preference number: 2 (lower is better)
Translates to: YLFMLRHRASLTHFTHGALRLIV*PSVSHL
Trigger: CAAGTGGCTCACTGAAGGTCACACAATGAGTCTGAG...AGCCCCATGTGTAAAGTGGGTGAGGCTGGCACGATGCCTCAGCATGAACAGGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR GCA 90 bp TACCTGTTCATGCTGAGGCATCGTGCCAGCCTCACCCACTTTACACATGGGGCTGGGCCCACAGAGTTTTaGAGAGGAAAACAAGGGTTC +
Preference number: 2 (lower is better)
Translates to: YLFMLRHRASLTHFTHGAGPTEF*RGKQGF
Trigger: GAACCCTTGTTTTCCTCTGCAAAACTCTGTGGGCCC...AGCCCCATGTGTAAAGTGGGTGAGGCTGGCACGATGCCTCAGCATGAACAGGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR GCA 90 bp GTTTGCAGCCATGGGTGCACACAGTGTGAGAACTGTGAATCTGAACTCCAGTTCGTGAGCCTGTGTGTCTaGACGTGTGCAGAGGTCAGC +
Preference number: 2 (lower is better)
Translates to: VCSHGCTQCENCESELQFVSLCV*TCAEVS
Trigger: GCTGACCTCTGCACACGTGCAGACACACAGGCTCAC...GAACTGGAGTTCAGATTCACAGTTCTCACACTGTGTGCACCCATGGCTGCAAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CAA 90 bp ATGAAGCTAACAGGAATGGATTGGCTGCCCATGGCCTTGACTCCTTaGTGGCTGAGCTGTTGGTACCAGTGCAGTTCACGGGTGTTAGGA +
Preference number: 2 (lower is better)
Translates to: MKLTGMDWLPMALTP*WLSCWYQCSSRVLG
Trigger: TCCTAACACCCGTGAACTGCACTGGTACCAACAGCTCAGCCACAAAGGAGTCAAGGCCATGGGCAGCCAATCCATTCCTGTTAGCTTCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR TCA 90 bp AAAATCAAATCTGCTGGAGCCCTCCTGGGGAACAGTCACCAAGGTGAGGACATTGGTGGCTCTCCAATCTaGGGCTCTCTTAGTGCACAG +
Preference number: 2 (lower is better)
Translates to: KIKSAGALLGNSHQGEDIGGSPI*GSLSAQ
Trigger: CTGTGCACTAAGAGAGCCTCAGATTGGAGAGCCACC...AATGTCCTCACCTTGGTGACTGTTCCCCAGGAGGGCTCCAGCAGATTTGATTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR TCA 90 bp AACCTTGGGGTCATGAAGCTAACAGGAATGGATTGGCTGCCCATGGCCTTGACTTGGAGTGTGGGCAGTTaGGCTAAGAGCTTGCTTCTC +
Preference number: 2 (lower is better)
Translates to: NLGVMKLTGMDWLPMALTWSVGS*AKSLLL
Trigger: GAGAAGCAAGCTCTTAGCTCAACTGCCCACACTCCA...AGTCAAGGCCATGGGCAGCCAATCCATTCCTGTTAGCTTCATGACCCCAAGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR TCA 90 bp AACCTTGGGGTCATGAAGCTAACAGGAATGGATTGGCTGCCCATGGCCTTGACTCACTCCTGCAAACACTaGATGGACATTCCCAGGCCT +
Preference number: 2 (lower is better)
Translates to: NLGVMKLTGMDWLPMALTHSCKH*MDIPRP
Trigger: AGGCCTGGGAATGTCCATTCAGTGTTTGCAGGAGTG...AGTCAAGGCCATGGGCAGCCAATCCATTCCTGTTAGCTTCATGACCCCAAGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR GCA 90 bp TACCTGTTCATGCTGAGGCATCGTGCCAGCCTCACCCACTTTACACATGGGGCTCAAGCACGGTTTCTCTaGTCAGTGTTTTGCCCATCT +
Preference number: 2 (lower is better)
Translates to: YLFMLRHRASLTHFTHGAQARFL*SVFCPS
Trigger: AGATGGGCAAAACACTGAGCAGAGAAACCGTGCTTG...AGCCCCATGTGTAAAGTGGGTGAGGCTGGCACGATGCCTCAGCATGAACAGGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR GCA 90 bp TACCTGTTCATGCTGAGGCATCGTGCCAGCCTCACCCACTTTACACATGGGGCTCCCTACAGAGGCAAATaGCTCTGTCTTTTGGAGTTC +
Preference number: 2 (lower is better)
Translates to: YLFMLRHRASLTHFTHGAPYRGK*LCLLEF
Trigger: GAACTCCAAAAGACAGAGGCATTTGCCTCTGTAGGG...AGCCCCATGTGTAAAGTGGGTGAGGCTGGCACGATGCCTCAGCATGAACAGGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CCA 90 bp TCAACTTTCCCCCATCCTCACCGGCAGCATACATTGTACCCAGGGAAGAGAGTTGTATACAGCATGAGCTaGGCACAGATCCTGGCTACC +
Preference number: 2 (lower is better)
Translates to: STFPHPHRQHTLYPGKRVVYSMS*AQILAT
Trigger: GGTAGCCAGGATCTGTGCCCAGCTCATGCTGTATAC...AACTCTCTTCCCTGGGTACAATGTATGCTGCCGGTGAGGATGGGGGAAAGTTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CAA 90 bp ACAGAACTCTCTCTGGAGGAAAGTCACACTGTGGTTGAGGAGGCCTaGGTGTCTTTCTGTGTCTTCACAAAGGGCCATCAAGGCCTCTTC +
Preference number: 2 (lower is better)
Translates to: TELSLEESHTVVEEA*VSFCVFTKGHQGLF
Trigger: GAAGAGGCCTTGATGGCCCTTTGTGAAGACACAGAAAGACACCAAGGCCTCCTCAACCACAGTGTGACTTTCCTCCAGAGAGAGTTCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR TCA 90 bp TCTGGCAACAAATGGAGAAACAGCAAAGAAACATTTGGTGCAGAACCTGCCCCCGGTCTGAAGCCTATCTaGGTGCCAGGTGAGCTCCAT +
Preference number: 2 (lower is better)
Translates to: SGNKWRNSKETFGAEPAPGLKPI*VPGELH
Trigger: ATGGAGCTCACCTGGCACTCAGATAGGCTTCAGACC...GGGGGCAGGTTCTGCACCAAATGTTTCTTTGCTGTTTCTCCATTTGTTGCCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR TCA 90 bp TCAACTTTCCCCCATCCTCACCGGCAGCATACATTGTACCCAGGGAAGAGAGTTAAGTCACACTGTGGTTaGGGAGGCCTTGGTGTCTTT +
Preference number: 2 (lower is better)
Translates to: STFPHPHRQHTLYPGKRVKSHCG*GGLGVF
Trigger: AAAGACACCAAGGCCTCCTCAACCACAGTGTGACTT...AACTCTCTTCCCTGGGTACAATGTATGCTGCCGGTGAGGATGGGGGAAAGTTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR GCA 90 bp CCAAAGACTGGGTTTGTGATCTCTCCTACTTACTGCTACTGGAACGGGAATCCACAACTGTACCAGGGCTaGACAGCAGGACTGACCAGT +
Preference number: 2 (lower is better)
Translates to: PKTGFVISPTYCYWNGNPQLYQG*TAGLTS
Trigger: ACTGGTCAGTCCTGCTGTGCAGCCCTGGTACAGTTG...TGGATTCCCGTTCCAGTAGCAGTAAGTAGGAGAGATCACAAACCCAGTCTTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CCA 90 bp TGTGAGAACTGTGAATCTGAACTCCAGTTCCTGAAAGTGGGAGGGGTAGGATGGAGACTGGTAGCTTGTTaGAGAGGTGTGGCTCTGGTG +
Preference number: 2 (lower is better)
Translates to: CENCESELQFLKVGGVGWRLVAC*RGVALV
Trigger: CACCAGAGCCACACCTCTCCAACAAGCTACCAGTCT...CCATCCTACCCCTCCCACTTTCAGGAACTGGAGTTCAGATTCACAGTTCTCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CAA 90 bp CTGGCAAATCATAGCAAAGGAAAAGCTCACCATTGTGCCACAGACTaGGCTAACATAGAGGGCGGAGCAGTGAGCAACAGAGCACTGAGT +
Preference number: 2 (lower is better)
Translates to: LANHSKGKAHHCATD*ANIEGGAVSNRALS
Trigger: ACTCAGTGCTCTGTTGCTCACTGCTCCGCCCTCTATGTTAGCCAAGTCTGTGGCACAATGGTGAGCTTTTCCTTTGCTATGATTTGCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR TCA 90 bp TGTGAGAACTGTGAATCTGAACTCCAGTTCCTGAAAGTGGGAGGGGTAGGATGGTACTGTGTCCCTCAGTaGCAGGAGCCAATGGACAAA +
Preference number: 2 (lower is better)
Translates to: CENCESELQFLKVGGVGWYCVPQ*QEPMDK
Trigger: TTTGTCCATTGGCTCCTGTCACTGAGGGACACAGTA...CCATCCTACCCCTCCCACTTTCAGGAACTGGAGTTCAGATTCACAGTTCTCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR TCA 90 bp TCTGGCAACAAATGGAGAAACAGCAAAGAAACATTTGGTGCAGAACCTGCCCCCCTCTGTCCCCAGGCCTaGTTTAGAAGGTCCCAATCT +
Preference number: 2 (lower is better)
Translates to: SGNKWRNSKETFGAEPAPLCPQA*FRRSQS
Trigger: AGATTGGGACCTTCTAAATCAGGCCTGGGGACAGAG...GGGGGCAGGTTCTGCACCAAATGTTTCTTTGCTGTTTCTCCATTTGTTGCCAGA
50% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR TCA 90 bp TACCTGTTCATGCTGAGGCATCGTGCCAGCCTCACCCACTTTACACATGGGGCTATCAATAACCACCACTaGTATTGGACGACTGACATC +
Preference number: 2 (lower is better)
Translates to: YLFMLRHRASLTHFTHGAINNHH*YWTTDI
Trigger: GATGTCAGTCGTCCAATATCAGTGGTGGTTATTGAT...AGCCCCATGTGTAAAGTGGGTGAGGCTGGCACGATGCCTCAGCATGAACAGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR GCA 90 bp GTTTGCAGCCATGGGTGCACACAGTGTGAGAACTGTGAATCTGAACTCCAGTTCAAACGGTGTTTTCTCTaGTCTGGAAGCAGCCGTCAG +
Preference number: 2 (lower is better)
Translates to: VCSHGCTQCENCESELQFKRCFL*SGSSRQ
Trigger: CTGACGGCTGCTTCCAGAGCAGAGAAAACACCGTTT...GAACTGGAGTTCAGATTCACAGTTCTCACACTGTGTGCACCCATGGCTGCAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CCA 90 bp TCTGGCAACAAATGGAGAAACAGCAAAGAAACATTTGGTGCAGAACCTGCCCCCTGCCTTGCTGGAGTGTaGGCAGTTGAGCTAAGAGCT +
Preference number: 2 (lower is better)
Translates to: SGNKWRNSKETFGAEPAPCLAGV*AVELRA
Trigger: AGCTCTTAGCTCAACTGCCCACACTCCAGCAAGGCA...GGGGGCAGGTTCTGCACCAAATGTTTCTTTGCTGTTTCTCCATTTGTTGCCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CCA 90 bp CCAAAGACTGGGTTTGTGATCTCTCCTACTTACTGCTACTGGAACGGGAATCCATCACAGAGATCTGCCTaGCTCCATCTTCCAGGTGCT +
Preference number: 2 (lower is better)
Translates to: PKTGFVISPTYCYWNGNPSQRSA*LHLPGA
Trigger: AGCACCTGGAAGATGGAGCCAGGCAGATCTCTGTGA...TGGATTCCCGTTCCAGTAGCAGTAAGTAGGAGAGATCACAAACCCAGTCTTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CAA 90 bp CCACTAAAGATTGAAGCTGGAGGGAAACAGGGGAATACAAATAGCTaGAAGCAGAGGCTGACTACCTGGGGCCAATTTGAGTTCCCTCCA +
Preference number: 2 (lower is better)
Translates to: PLKIEAGGKQGNTNS*KQRLTTWGQFEFPP
Trigger: TGGAGGGAACTCAAATTGGCCCCAGGTAGTCAGCCTCTGCTTCAAGCTATTTGTATTCCCCTGTTTCCCTCCAGCTTCAATCTTTAGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR TCA 90 bp CCAAAGACTGGGTTTGTGATCTCTCCTACTTACTGCTACTGGAACGGGAATCCACCTACCACTAAAGATTaGAGCTGGAGGGAAACAGGG +
Preference number: 2 (lower is better)
Translates to: PKTGFVISPTYCYWNGNPPTTKD*SWRETG
Trigger: CCCTGTTTCCCTCCAGCTTCAATCTTTAGTGGTAGG...TGGATTCCCGTTCCAGTAGCAGTAAGTAGGAGAGATCACAAACCCAGTCTTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR GCA 90 bp TCAACTTTCCCCCATCCTCACCGGCAGCATACATTGTACCCAGGGAAGAGAGTTGACAAGAATGGCCAGTaGCTGATGACTTTGGAAAAG +
Preference number: 2 (lower is better)
Translates to: STFPHPHRQHTLYPGKRVDKNGQ*LMTLEK
Trigger: CTTTTCCAAAGTCATCAGGCACTGGCCATTCTTGTC...AACTCTCTTCCCTGGGTACAATGTATGCTGCCGGTGAGGATGGGGGAAAGTTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR GCA 90 bp TTCCCAGGCCTAAGTCTTTTCTCTGACTGTGAAGTCTCTGCCCCAAATCCTTTTCAGTTTCAGCCATGTTaGCTTGCTGGAGTGTGGGCA +
Preference number: 2 (lower is better)
Translates to: FPGLSLFSDCEVSAPNPFQFQPC*LAGVWA
Trigger: TGCCCACACTCCAGCAAGGCAACATGGCTGAAACTG...AAAAGGATTTGGGGCAGAGACTTCACAGTCAGAGAAAAGACTTAGGCCTGGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CAA 90 bp AATGGCCAGTGCCTGATGACTTTGGAAAAGAAGGGGTCATTGTGGTaGTTCTGGAAGTCTTTCCACATCTGCTGTCTTCCACCACAGCTA +
Preference number: 2 (lower is better)
Translates to: NGQCLMTLEKKGSLW*FWKSFHICCLPPQL
Trigger: TAGCTGTGGTGGAAGACAGCAGATGTGGAAAGACTTCCAGAACAACCACAATGACCCCTTCTTTTCCAAAGTCATCAGGCACTGGCCATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CAA 90 bp GACAAGAATGGCCAGTGCCTGATGACTTTGGAAAAGAAGGGGTCATaGTGGTTGTTCTGGAAGTCTTTCCACATCTGCTGTCTTCCACCA +
Preference number: 2 (lower is better)
Translates to: DKNGQCLMTLEKKGS*WLFWKSFHICCLPP
Trigger: TGGTGGAAGACAGCAGATGTGGAAAGACTTCCAGAACAACCACAATGACCCCTTCTTTTCCAAAGTCATCAGGCACTGGCCATTCTTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR TCA 90 bp AAAATCAAATCTGCTGGAGCCCTCCTGGGGAACAGTCACCAAGGTGAGGACATTAAGACAATAGGACGTTaGAAAGGTGGCTCTCCAATC +
Preference number: 2 (lower is better)
Translates to: KIKSAGALLGNSHQGEDIKTIGR*KGGSPI
Trigger: GATTGGAGAGCCACCTTTTCAACGTCCTATTGTCTT...AATGTCCTCACCTTGGTGACTGTTCCCCAGGAGGGCTCCAGCAGATTTGATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR TCA 90 bp AACCTTGGGGTCATGAAGCTAACAGGAATGGATTGGCTGCCCATGGCCTTGACTCTTTGCTTACAAAACTaGGTTGACAAGAATGGCCAG +
Preference number: 2 (lower is better)
Translates to: NLGVMKLTGMDWLPMALTLCLQN*VDKNGQ
Trigger: CTGGCCATTCTTGTCAACTCAGTTTTGTAAGCAAAG...AGTCAAGGCCATGGGCAGCCAATCCATTCCTGTTAGCTTCATGACCCCAAGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR TCA 90 bp TCATTCTCACACCAAGGCGGAGTCAAAGCACAAAACAGAGACAAAATGGCAGGATACCTGGGGCCAATTTaGGTTCCCTCCAACTTACTG +
Preference number: 2 (lower is better)
Translates to: SFSHQGGVKAQNRDKMAGYLGPI*VPSNLL
Trigger: CAGTAAGTTGGAGGGAACTCAAATTGGCCCCAGGTA...TCCTGCCATTTTGTCTCTGTTTTGTGCTTTGACTCCGCCTTGGTGTGAGAATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR GCA 90 bp GCATGCCACAGTCTGAAGATTTCACAAAAAGATGAGGAAGGTAAGGTTCTAGTAACCGGGGTGCTCATTTaGCAGCTGGAGCAGGCCATT +
Preference number: 2 (lower is better)
Translates to: ACHSLKISQKDEEGKVLVTGVLI*QLEQAI
Trigger: AATGGCCTGCTCCAGCTGGCAAATGAGCACCCCGGT...TACTAGAACCTTACCTTCCTCATCTTTTTGTGAAATCTTCAGACTGTGGCATGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CCA 90 bp TCTGGCAACAAATGGAGAAACAGCAAAGAAACATTTGGTGCAGAACCTGCCCCCCCTGCAAACACTGAATaGACATTCCCAGGCCTAAGT +
Preference number: 2 (lower is better)
Translates to: SGNKWRNSKETFGAEPAPPANTE*TFPGLS
Trigger: ACTTAGGCCTGGGAATGTCCATTCAGTGTTTGCAGG...GGGGGCAGGTTCTGCACCAAATGTTTCTTTGCTGTTTCTCCATTTGTTGCCAGA
48% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR TCA 90 bp TGTGAGAACTGTGAATCTGAACTCCAGTTCCTGAAAGTGGGAGGGGTAGGATGGTCACACATTCCTGCCTaGCTCTTGTTTCAATTCAGT +
Preference number: 2 (lower is better)
Translates to: CENCESELQFLKVGGVGWSHIPA*LLFQFS
Trigger: ACTGAATTGAAACAAGAGTCAGGCAGGAATGTGTGA...CCATCCTACCCCTCCCACTTTCAGGAACTGGAGTTCAGATTCACAGTTCTCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR TCA 90 bp AAGCAGAGGACCAATGAGAGCACTGTATGTTATGCACACACTCGGGTCCAATTCTGTCTTTTGGAGTTCTaGGTTCAGGTCAGCTGTGAT +
Preference number: 2 (lower is better)
Translates to: KQRTNESTVCYAHTRVQFCLLEF*VQVSCD
Trigger: ATCACAGCTGACCTGAACTCAGAACTCCAAAAGACA...GAATTGGACCCGAGTGTGTGCATAACATACAGTGCTCTCATTGGTCCTCTGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR TCA 90 bp CAGACAAGTAGAAGCCAGTCATGGGTCCTTCATAAATATAGTGCTTTAAATGACCCAGAGGTAGCAAGGTaGGGGGAGAGGCAAAACCCA +
Preference number: 2 (lower is better)
Translates to: QTSRSQSWVLHKYSALNDPEVAR*GERQNP
Trigger: TGGGTTTTGCCTCTCCCCTCACCTTGCTACCTCTGG...GTCATTTAAAGCACTATATTTATGAAGGACCCATGACTGGCTTCTACTTGTCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR GCA 90 bp AACCTTGGGGTCATGAAGCTAACAGGAATGGATTGGCTGCCCATGGCCTTGACTGAAATCAGGAGCTCTTaGTTTGCTTACAAAACTGAG +
Preference number: 2 (lower is better)
Translates to: NLGVMKLTGMDWLPMALTEIRSS*FAYKTE
Trigger: CTCAGTTTTGTAAGCAAAGCAAGAGCTCCTGATTTC...AGTCAAGGCCATGGGCAGCCAATCCATTCCTGTTAGCTTCATGACCCCAAGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR GCA 90 bp CAGACAAGTAGAAGCCAGTCATGGGTCCTTCATAAATATAGTGCTTTAAATGACCAAGTTGGAGGCCCATaGAGGCCAGGAGTACAGGCA +
Preference number: 2 (lower is better)
Translates to: QTSRSQSWVLHKYSALNDQVGGP*RPGVQA
Trigger: TGCCTGTACTCCTGGCCTGCATGGGCCTCCAACTTG...GTCATTTAAAGCACTATATTTATGAAGGACCCATGACTGGCTTCTACTTGTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CCA 90 bp TCAACTTTCCCCCATCCTCACCGGCAGCATACATTGTACCCAGGGAAGAGAGTTATAGCAGTACCTAGATaGCAAAAAGTAGCCCTTGTA +
Preference number: 2 (lower is better)
Translates to: STFPHPHRQHTLYPGKRVIAVPR*QKVALV
Trigger: TACAAGGGCTACTTTTTGCCATCTAGGTACTGCTAT...AACTCTCTTCCCTGGGTACAATGTATGCTGCCGGTGAGGATGGGGGAAAGTTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CAA 90 bp AGAGCTTGCTTCTCATTGATAAGGATTGTCAAAATGGAGATCTGTTaGTTTCTGGCCTCTTGCTGCATCCTCCAGGAGAGTGAGCAAGGA +
Preference number: 2 (lower is better)
Translates to: RACFSLIRIVKMEIC*FLASCCILQESEQG
Trigger: TCCTTGCTCACTCTCCTGGAGGATGCAGCAAGAGGCCAGAAACAAACAGATCTCCATTTTGACAATCCTTATCAATGAGAAGCAAGCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR TCA 90 bp TTAAGAGACCATTTTCCCCTTAAGTCTGAGAGAAGTGCTAGAAGACAGTTGGTGGAAATGTGGAAGGTCTaGAGCCTATCTGAGTGCCAG +
Preference number: 2 (lower is better)
Translates to: LRDHFPLKSERSARRQLVEMWKV*SLSECQ
Trigger: CTGGCACTCAGATAGGCTTCAGACCTTCCACATTTC...CACCAACTGTCTTCTAGCACTTCTCTCAGACTTAAGGGGAAAATGGTCTCTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR TCA 90 bp CCTGCAAACACTGAATGGACATTCCCAGGCCTAAGTCTTTTCTCTGACTGTGAACTTACAAAACTGAGTTaGCAAGAATGGCCAGTGCCT +
Preference number: 2 (lower is better)
Translates to: PANTEWTFPGLSLFSDCELTKLS*QEWPVP
Trigger: AGGCACTGGCCATTCTTGTCAACTCAGTTTTGTAAG...TTCACAGTCAGAGAAAAGACTTAGGCCTGGGAATGTCCATTCAGTGTTTGCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR TCA 90 bp GGTTCTGGTGTTCATTTGATTCCCTGTAGGGAGAAGGTCAATACTATCAAATGCCCCAGAGAACCTCCCTaGAAAGAGTTTCTCCTCAAC +
Preference number: 2 (lower is better)
Translates to: GSGVHLIPCREKVNTIKCPREPP*KEFLLN
Trigger: GTTGAGGAGAAACTCTTTTCAGGGAGGTTCTCTGGG...GCATTTGATAGTATTGACCTTCTCCCTACAGGGAATCAAATGAACACCAGAACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR TCA 90 bp TCATTCTCACACCAAGGCGGAGTCAAAGCACAAAACAGAGACAAAATGGCAGGAGACTACAAGGGAGAATaGAGCAGAAAGAACAGACAG +
Preference number: 2 (lower is better)
Translates to: SFSHQGGVKAQNRDKMAGDYKGE*SRKNRQ
Trigger: CTGTCTGTTCTTTCTGCTTCATTCTCCCTTGTAGTC...TCCTGCCATTTTGTCTCTGTTTTGTGCTTTGACTCCGCCTTGGTGTGAGAATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR TCA 90 bp CAGACAAGTAGAAGCCAGTCATGGGTCCTTCATAAATATAGTGCTTTAAATGACTACATGCAAAGGCATTaGAGGGACTGGGGGCTCTGG +
Preference number: 2 (lower is better)
Translates to: QTSRSQSWVLHKYSALNDYMQRH*RDWGLW
Trigger: CCAGAGCCCCCAGTCCCTTCAATGCCTTTGCATGTA...GTCATTTAAAGCACTATATTTATGAAGGACCCATGACTGGCTTCTACTTGTCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR TCA 90 bp AAGCAGAGGACCAATGAGAGCACTGTATGTTATGCACACACTCGGGTCCAATTCCTCATATGTTGCTCTTaGTGGTTCCAAGATCACACT +
Preference number: 2 (lower is better)
Translates to: KQRTNESTVCYAHTRVQFLICCS*WFQDHT
Trigger: AGTGTGATCTTGGAACCATCAAGAGCAACATATGAG...GAATTGGACCCGAGTGTGTGCATAACATACAGTGCTCTCATTGGTCCTCTGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR TCA 90 bp TGTGAGAACTGTGAATCTGAACTCCAGTTCCTGAAAGTGGGAGGGGTAGGATGGGAACCAGGAAGTTGGTaGTTTTTCCAGGAAATTGTA +
Preference number: 2 (lower is better)
Translates to: CENCESELQFLKVGGVGWEPGSW*FFQEIV
Trigger: TACAATTTCCTGGAAAAATCACCAACTTCCTGGTTC...CCATCCTACCCCTCCCACTTTCAGGAACTGGAGTTCAGATTCACAGTTCTCACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR GCA 90 bp GCATGCCACAGTCTGAAGATTTCACAAAAAGATGAGGAAGGTAAGGTTCTAGTAAACCTCACAGAGATCTaGCTGGCTCCATCTTCCAGG +
Preference number: 2 (lower is better)
Translates to: ACHSLKISQKDEEGKVLVNLTEI*LAPSSR
Trigger: CCTGGAAGATGGAGCCAGGCAGATCTCTGTGAGGTT...TACTAGAACCTTACCTTCCTCATCTTTTTGTGAAATCTTCAGACTGTGGCATGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CCA 90 bp CAGACAAGTAGAAGCCAGTCATGGGTCCTTCATAAATATAGTGCTTTAAATGACATCAACAGTGGGAACTaGTACCCTCTGTCCCCAGGC +
Preference number: 2 (lower is better)
Translates to: QTSRSQSWVLHKYSALNDINSGN*YPLSPG
Trigger: GCCTGGGGACAGAGGGTACCAGTTCCCACTGTTGAT...GTCATTTAAAGCACTATATTTATGAAGGACCCATGACTGGCTTCTACTTGTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CCA 90 bp TCTGGCAACAAATGGAGAAACAGCAAAGAAACATTTGGTGCAGAACCTGCCCCCAAGAAGGGGTCATTGTaGTTGTTCTGGAAGTCTTTC +
Preference number: 2 (lower is better)
Translates to: SGNKWRNSKETFGAEPAPKKGSL*LFWKSF
Trigger: GAAAGACTTCCAGAACAACCACAATGACCCCTTCTT...GGGGGCAGGTTCTGCACCAAATGTTTCTTTGCTGTTTCTCCATTTGTTGCCAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CCA 90 bp AACCTTGGGGTCATGAAGCTAACAGGAATGGATTGGCTGCCCATGGCCTTGACTCTTCTCAGCACTCAGTaGAGTTTTATTTCAGTTTCA +
Preference number: 2 (lower is better)
Translates to: NLGVMKLTGMDWLPMALTLLSTQ*SFISVS
Trigger: TGAAACTGAAATAAAACTCCACTGAGTGCTGAGAAG...AGTCAAGGCCATGGGCAGCCAATCCATTCCTGTTAGCTTCATGACCCCAAGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CCA 90 bp AAGCAGAGGACCAATGAGAGCACTGTATGTTATGCACACACTCGGGTCCAATTCAATGCCTCTGTCTTTTaGAGTTCTGAGTTCAGGTCA +
Preference number: 2 (lower is better)
Translates to: KQRTNESTVCYAHTRVQFNASVF*SSEFRS
Trigger: TGACCTGAACTCAGAACTCCAAAAGACAGAGGCATT...GAATTGGACCCGAGTGTGTGCATAACATACAGTGCTCTCATTGGTCCTCTGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CAA 90 bp AATCCAGGACAGATGGGCCTGATTCAATCTGGCAATTTCTTAACATaGAGCAAACGTGTAGCTGACCAAGATGGTACACATGCCTCTTTG +
Preference number: 2 (lower is better)
Translates to: NPGQMGLIQSGNFLT*SKRVADQDGTHASL
Trigger: CAAAGAGGCATGTGTACCATCTTGGTCAGCTACACGTTTGCTCAATGTTAAGAAATTGCCAGATTGAATCAGGCCCATCTGTCCTGGATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR TCA 90 bp CCAAAGACTGGGTTTGTGATCTCTCCTACTTACTGCTACTGGAACGGGAATCCAAAGCATGCCACAGTCTaGAGATTTCACAAAAAGATG +
Preference number: 2 (lower is better)
Translates to: PKTGFVISPTYCYWNGNPKHATV*RFHKKM
Trigger: CATCTTTTTGTGAAATCTTCAGACTGTGGCATGCTT...TGGATTCCCGTTCCAGTAGCAGTAAGTAGGAGAGATCACAAACCCAGTCTTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CCA 90 bp TTCCCAGGCCTAAGTCTTTTCTCTGACTGTGAAGTCTCTGCCCCAAATCCTTTTTCCGATGTTCAGTCATaGCAAGGATGGAATAATGGA +
Preference number: 2 (lower is better)
Translates to: FPGLSLFSDCEVSAPNPFSDVQS*QGWNNG
Trigger: TCCATTATTCCATCCTTGCCATGACTGAACATCGGA...AAAAGGATTTGGGGCAGAGACTTCACAGTCAGAGAAAAGACTTAGGCCTGGGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CCA 90 bp TGTGAGAACTGTGAATCTGAACTCCAGTTCCTGAAAGTGGGAGGGGTAGGATGGAAAGGCATGAAGTTTTaGAAGAGTCACAGTCATAGT +
Preference number: 2 (lower is better)
Translates to: CENCESELQFLKVGGVGWKGMKF*KSHSHS
Trigger: ACTATGACTGTGACTCTTCCAAAACTTCATGCCTTT...CCATCCTACCCCTCCCACTTTCAGGAACTGGAGTTCAGATTCACAGTTCTCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CCA 90 bp GCATGCCACAGTCTGAAGATTTCACAAAAAGATGAGGAAGGTAAGGTTCTAGTATGGCTGCCCTGGTTCTaGTGTTCATTTGATTCCCTG +
Preference number: 2 (lower is better)
Translates to: ACHSLKISQKDEEGKVLVWLPWF*CSFDSL
Trigger: CAGGGAATCAAATGAACACCAGAACCAGGGCAGCCA...TACTAGAACCTTACCTTCCTCATCTTTTTGTGAAATCTTCAGACTGTGGCATGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CCA 90 bp CTAGAGACAAGAAGTAGGACTCCGATGTTCAGTCATGGCAAGGATGGAATAATGTGTCATTCCTGTGGTTaGTTCCTTTCTAAAGCTCTC +
Preference number: 2 (lower is better)
Translates to: LETRSRTPMFSHGKDGIMCHSCG*FLSKAL
Trigger: GAGAGCTTTAGAAAGGAACCAACCACAGGAATGACA...CATTATTCCATCCTTGCCATGACTGAACATCGGAGTCCTACTTCTTGTCTCTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CCA 90 bp TCATTCTCACACCAAGGCGGAGTCAAAGCACAAAACAGAGACAAAATGGCAGGACAGTCATGGCAAGGATaGAATAATGGAAATGTGGAA +
Preference number: 2 (lower is better)
Translates to: SFSHQGGVKAQNRDKMAGQSWQG*NNGNVE
Trigger: TTCCACATTTCCATTATTCCATCCTTGCCATGACTG...TCCTGCCATTTTGTCTCTGTTTTGTGCTTTGACTCCGCCTTGGTGTGAGAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CAA 90 bp ATTGGACGACTGACATCAGTAAGAAACGGATTCGACAGAGTCACCTaGCACAAACAGGACACACTTCACAAACTCCTTAAATCTTTTGTG +
Preference number: 2 (lower is better)
Translates to: IGRLTSVRNGFDRVT*HKQDTLHKLLKSFV
Trigger: CACAAAAGATTTAAGGAGTTTGTGAAGTGTGTCCTGTTTGTGCAAGGTGACTCTGTCGAATCCGTTTCTTACTGATGTCAGTCGTCCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR GCA 90 bp GCATGCCACAGTCTGAAGATTTCACAAAAAGATGAGGAAGGTAAGGTTCTAGTAGTACAAAGCATTAATTaGATCTTGGGGTGGGGATGG +
Preference number: 2 (lower is better)
Translates to: ACHSLKISQKDEEGKVLVVQSIN*ILGWGW
Trigger: CCATCCCCACCCCAAGATGCAATTAATGCTTTGTAC...TACTAGAACCTTACCTTCCTCATCTTTTTGTGAAATCTTCAGACTGTGGCATGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CCA 90 bp CAGACAAGTAGAAGCCAGTCATGGGTCCTTCATAAATATAGTGCTTTAAATGACCTACAGAACTCTCTCTaGAGGAAAGTCACACTGTGG +
Preference number: 2 (lower is better)
Translates to: QTSRSQSWVLHKYSALNDLQNSL*RKVTLW
Trigger: CCACAGTGTGACTTTCCTCCAGAGAGAGTTCTGTAG...GTCATTTAAAGCACTATATTTATGAAGGACCCATGACTGGCTTCTACTTGTCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CCA 90 bp GGTTCTGGTGTTCATTTGATTCCCTGTAGGGAGAAGGTCAATACTATCAAATGCCAGAAAGCAGGTATATaGAAATCAGGAGCTCTTGCT +
Preference number: 2 (lower is better)
Translates to: GSGVHLIPCREKVNTIKCQKAGI*KSGALA
Trigger: AGCAAGAGCTCCTGATTTCCATATACCTGCTTTCTG...GCATTTGATAGTATTGACCTTCTCCCTACAGGGAATCAAATGAACACCAGAACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CCA 90 bp CCAAAGACTGGGTTTGTGATCTCTCCTACTTACTGCTACTGGAACGGGAATCCATTAGAACATACATGTTaGTATTTCTTCACCAGCACA +
Preference number: 2 (lower is better)
Translates to: PKTGFVISPTYCYWNGNPLEHTC*YFFTST
Trigger: TGTGCTGGTGAAGAAATACCAACATGTATGTTCTAA...TGGATTCCCGTTCCAGTAGCAGTAAGTAGGAGAGATCACAAACCCAGTCTTTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR TCA 90 bp GGTTCTGGTGTTCATTTGATTCCCTGTAGGGAGAAGGTCAATACTATCAAATGCACTTGTACAAGTAGTTaGTGCCTAACATTCTGCAAG +
Preference number: 2 (lower is better)
Translates to: GSGVHLIPCREKVNTIKCTCTSS*CLTFCK
Trigger: CTTGCAGAATGTTAGGCATCAACTACTTGTACAAGT...GCATTTGATAGTATTGACCTTCTCCCTACAGGGAATCAAATGAACACCAGAACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CCA 90 bp ATTCCCTGTAGGGAGAAGGTCAATACTATCAAATGCCACACTTTTTACATTAAGAGGCAGAATGCTTGTTaGCAGAACCTTAACCTTGGG +
Preference number: 2 (lower is better)
Translates to: IPCREKVNTIKCHTFYIKRQNAC*QNLNLG
Trigger: CCCAAGGTTAAGGTTCTGCCAACAAGCATTCTGCCT...CTTAATGTAAAAAGTGTGGCATTTGATAGTATTGACCTTCTCCCTACAGGGAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR GCA 90 bp ATTCCCTGTAGGGAGAAGGTCAATACTATCAAATGCCACACTTTTTACATTAAGAAGTCTTTCCACATCTaGTGTCTTCCACCACAGCTA +
Preference number: 2 (lower is better)
Translates to: IPCREKVNTIKCHTFYIKKSFHI*CLPPQL
Trigger: TAGCTGTGGTGGAAGACAGCAGATGTGGAAAGACTT...CTTAATGTAAAAAGTGTGGCATTTGATAGTATTGACCTTCTCCCTACAGGGAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CCA 90 bp CAGACAAGTAGAAGCCAGTCATGGGTCCTTCATAAATATAGTGCTTTAAATGACCCAGTGGCCTATATTTaGGCCTTTACTGAACAAAAG +
Preference number: 2 (lower is better)
Translates to: QTSRSQSWVLHKYSALNDPVAYI*AFTEQK
Trigger: CTTTTGTTCAGTAAAGGCCCAAATATAGGCCACTGG...GTCATTTAAAGCACTATATTTATGAAGGACCCATGACTGGCTTCTACTTGTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 72 bp AGAGTGAGCAAGGAATCTGGAAGGGCAGAAGTGCCGTaGGCAGGGGTACAGGAGGAAGGGTGCAGGGAACCG +
Preference number: 3 (lower is better)
Translates to: RVSKESGRAEVP*AGVQEEGCREP
Trigger: CGGTTCCCTGCACCCTTCCTCCTGTACCCCTGCCCACGGCACTTCTGCCCTTCCAGATTCCTTGCTCACTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 72 bp GCTTGGTGGCAGGTACCTGTTCATGCTGAGGCATCGTaGCAGCCTCACCCACTTTACACATGGGGCTGGTCA +
Preference number: 3 (lower is better)
Translates to: AWWQVPVHAEAS*QPHPLYTWGWS
Trigger: TGACCAGCCCCATGTGTAAAGTGGGTGAGGCTGGCACGATGCCTCAGCATGAACAGGTACCTGCCACCAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 72 bp TTGTCTTCAGGGCATAGTGGGCCCAGGAGCACCGAGTaGAGCACTAACCCAACACAACTGTACCAGGGCTGC +
Preference number: 3 (lower is better)
Translates to: LSSGHSGPRSTE*STNPTQLYQGC
Trigger: GCAGCCCTGGTACAGTTGTGTTGGGTTAGTGCTGCACTCGGTGCTCCTGGGCCCACTATGCCCTGAAGACAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CAA 90 bp TACCTGTTCATGCTGAGGCATCGTGCCAGCCTCACCCACTTTACACATGGGGCTTTCCTTTTGGCCCCCTaGGGACCAGAAGACCGAGAG +
Preference number: 3 (lower is better)
Translates to: YLFMLRHRASLTHFTHGAFLLAP*GPEDRE
Trigger: CTCTCGGTCTTCTGGTCCCAAGGGGGCCAAAAGGAA...AGCCCCATGTGTAAAGTGGGTGAGGCTGGCACGATGCCTCAGCATGAACAGGTA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR TCA 72 bp CAGCATGAGCTGGGCACAGATCCTGGCTACCTATGTTaGCAGACACTCGAGAGACCTCAAGGCGTGCATGCG +
Preference number: 3 (lower is better)
Translates to: QHELGTDPGYLC*QTLERPQGVHA
Trigger: CGCATGCACGCCTTGAGGTCTCTCGAGTGTCTGTCAACATAGGTAGCCAGGATCTGTGCCCAGCTCATGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 72 bp AGGATACAGTCCCACCCCGGGGGTGGGCGTTACCCTTaGCTTTCAGTGCAGGTCATCAGTCTGTACATTCTC +
Preference number: 3 (lower is better)
Translates to: RIQSHPGGGRYP*LSVQVISLYIL
Trigger: GAGAATGTACAGACTGATGACCTGCACTGAAAGGCAAGGGTAACGCCCACCCCCGGGGTGGGACTGTATCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 72 bp GGAATGGATTGGCTGCCCATGGCCTTGACTCCTTTGTaGCTGAGCTGTTGGTACCAGTGCAGTTCACGGGTG +
Preference number: 3 (lower is better)
Translates to: GMDWLPMALTPL*LSCWYQCSSRV
Trigger: CACCCGTGAACTGCACTGGTACCAACAGCTCAGCCACAAAGGAGTCAAGGCCATGGGCAGCCAATCCATTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 72 bp ACCAACCCAACCAAGGATTTCAGCCTAAGGCTTCCATaGCAGGGGCTCGAGTCTTCTCAGCACTCAGTGGAG +
Preference number: 3 (lower is better)
Translates to: TNPTKDFSLRLP*QGLESSQHSVE
Trigger: CTCCACTGAGTGCTGAGAAGACTCGAGCCCCTGGCATGGAAGCCTTAGGCTGAAATCCTTGGTTGGGTTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR TCA 72 bp AGTGTATCAGGCTTGGTGGCAGGTACCTGTTCATGCTaGGGCATCGTGCCAGCCTCACCCACTTTACACATG +
Preference number: 3 (lower is better)
Translates to: SVSGLVAGTCSC*GIVPASPTLHM
Trigger: CATGTGTAAAGTGGGTGAGGCTGGCACGATGCCTCAGCATGAACAGGTACCTGCCACCAAGCCTGATACACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 72 bp GCTGAGGCATCGTGCCAGCCTCACCCACTTTACACATaGGGCTGGTCACAGAAAAGAAAGTGTGATTCAGGG +
Preference number: 3 (lower is better)
Translates to: AEASCQPHPLYT*GWSQKRKCDSG
Trigger: CCCTGAATCACACTTTCTTTTCTGTGACCAGCCCCATGTGTAAAGTGGGTGAGGCTGGCACGATGCCTCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 72 bp GGGTTCTACTCACTTAGGTCAGTGTATCAGGCTTGGTaGCAGGTACCTGTTCATGCTGAGGCATCGTGCCAG +
Preference number: 3 (lower is better)
Translates to: GFYSLRSVYQAW*QVPVHAEASCQ
Trigger: CTGGCACGATGCCTCAGCATGAACAGGTACCTGCCACCAAGCCTGATACACTGACCTAAGTGAGTAGAACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 72 bp AAGACTGGGTTTGTGATCTCTCCTACTTACTGCTACTaGAACGGGAATCCAGGATACAGTCCCACCCCGGGG +
Preference number: 3 (lower is better)
Translates to: KTGFVISPTYCY*NGNPGYSPTPG
Trigger: CCCCGGGGTGGGACTGTATCCTGGATTCCCGTTCCAGTAGCAGTAAGTAGGAGAGATCACAAACCCAGTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR TCA 72 bp TCAACAGTGGGAACTGGTACCCTCTGTCCCCAGGCCTaGTTTAGAAGGTCCCAATCTGTTCTCCGTACTGTG +
Preference number: 3 (lower is better)
Translates to: STVGTGTLCPQA*FRRSQSVLRTV
Trigger: CACAGTACGGAGAACAGATTGGGACCTTCTAAATCAGGCCTGGGGACAGAGGGTACCAGTTCCCACTGTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR TCA 72 bp ACCCAACACAACTGTACCAGGGCTGCACAGCAGGACTaGCCAGTTCTTAGTCCTCACTCTGCTTTTGAGCTC +
Preference number: 3 (lower is better)
Translates to: TQHNCTRAAQQD*PVLSPHSAFEL
Trigger: GAGCTCAAAAGCAGAGTGAGGACTAAGAACTGGTCAGTCCTGCTGTGCAGCCCTGGTACAGTTGTGTTGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 72 bp AACCTCACAGAGATCTGCCTGGCTCCATCTTCCAGGTaGTGGGATCAAAACTGCATCACACATTCCTGCCTG +
Preference number: 3 (lower is better)
Translates to: NLTEICLAPSSR*WDQNCITHSCL
Trigger: CAGGCAGGAATGTGTGATGCAGTTTTGATCCCAGCACCTGGAAGATGGAGCCAGGCAGATCTCTGTGAGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 72 bp GAGGAGAACAAAGTAGGAGGCACTGAGGAGAATCGGTaGTGGGCCACAAGGACTACAAGGGAGAATGAAGCA +
Preference number: 3 (lower is better)
Translates to: EENKVGGTEENR*WATRTTRENEA
Trigger: TGCTTCATTCTCCCTTGTAGTCCTTGTGGCCCAGCACCGATTCTCCTCAGTGCCTCCTACTTTGTTCTCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 72 bp CATGCCGTAATTAGTGCACGCCTACAGAACTCTCTCTaGAGGAAAGTCACACTGTGGTTGAGGAGGCCTTGG +
Preference number: 3 (lower is better)
Translates to: HAVISARLQNSL*RKVTLWLRRPW
Trigger: CCAAGGCCTCCTCAACCACAGTGTGACTTTCCTCCAGAGAGAGTTCTGTAGGCGTGCACTAATTACGGCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 72 bp CTCACAGAGATCTGCCTGGCTCCATCTTCCAGGTGCTaGGATCAAAACTGCATCACACATTCCTGCCTGACT +
Preference number: 3 (lower is better)
Translates to: LTEICLAPSSRC*DQNCITHSCLT
Trigger: AGTCAGGCAGGAATGTGTGATGCAGTTTTGATCCCAGCACCTGGAAGATGGAGCCAGGCAGATCTCTGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 72 bp CTTAACCTTGGGGTCATGAAGCTAACAGGAATGGATTaGCTGCCCATGGCCTTGACTCCTTTGTGGCTGAGC +
Preference number: 3 (lower is better)
Translates to: LNLGVMKLTGMD*LPMALTPLWLS
Trigger: GCTCAGCCACAAAGGAGTCAAGGCCATGGGCAGCCAATCCATTCCTGTTAGCTTCATGACCCCAAGGTTAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 72 bp CCAGTAACTGAGTCCACATGCAATACAAATCCTGACTaGGCAGGGATGCTGTCCTGCCCAGGAATGACACAG +
Preference number: 3 (lower is better)
Translates to: PVTESTCNTNPD*AGMLSCPGMTQ
Trigger: CTGTGTCATTCCTGGGCAGGACAGCATCCCTGCCCAGTCAGGATTTGTATTGCATGTGGACTCAGTTACTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CAA 90 bp TGGGGTCATGAAGCTAACAGGAATGGATTGGCTGCCCATGGCCTTGACTCCTTTGTGGTTGAGGAGGCCTaGGTGTCTTTCTGTGTCTTC +
Preference number: 3 (lower is better)
Translates to: WGHEANRNGLAAHGLDSFVVEEA*VSFCVF
Trigger: GAAGACACAGAAAGACACCAAGGCCTCCTCAACCAC...AAAGGAGTCAAGGCCATGGGCAGCCAATCCATTCCTGTTAGCTTCATGACCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CAA 90 bp TGGGGTCATGAAGCTAACAGGAATGGATTGGCTGCCCATGGCCTTGACTCCTTTTTTGTTTCTGGCCTCTaGCTGCATCCTCCAGGAGAG +
Preference number: 3 (lower is better)
Translates to: WGHEANRNGLAAHGLDSFFVSGL*LHPPGE
Trigger: CTCTCCTGGAGGATGCAGCAAGAGGCCAGAAACAAA...AAAGGAGTCAAGGCCATGGGCAGCCAATCCATTCCTGTTAGCTTCATGACCCCA
52% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CAA 90 bp GTTTGCAGCCATGGGTGCACACAGTGTGAGAACTGTGAATCTGAACTCCAGTTCTTCAGCCATGTTGCCTaGCTGGAGTGTGGGCAGTTG +
Preference number: 3 (lower is better)
Translates to: VCSHGCTQCENCESELQFFSHVA*LECGQL
Trigger: CAACTGCCCACACTCCAGCAAGGCAACATGGCTGAA...GAACTGGAGTTCAGATTCACAGTTCTCACACTGTGTGCACCCATGGCTGCAAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CAA 90 bp AAAATCAAATCTGCTGGAGCCCTCCTGGGGAACAGTCACCAAGGTGAGGACATTAAGACTGGTAGCTTGTaGGAGAGGTGTGGCTCTGGT +
Preference number: 3 (lower is better)
Translates to: KIKSAGALLGNSHQGEDIKTGSL*ERCGSG
Trigger: ACCAGAGCCACACCTCTCCAACAAGCTACCAGTCTT...AATGTCCTCACCTTGGTGACTGTTCCCCAGGAGGGCTCCAGCAGATTTGATTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 72 bp CCTCCAAAGACTGGGTTTGTGATCTCTCCTACTTACTaGTACTGGAACGGGAATCCAGGATACAGTCCCACC +
Preference number: 3 (lower is better)
Translates to: PPKTGFVISPTY*YWNGNPGYSPT
Trigger: GGTGGGACTGTATCCTGGATTCCCGTTCCAGTAGCAGTAAGTAGGAGAGATCACAAACCCAGTCTTTGGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 72 bp CTCTGGAGGAAAGTCACACTGTGGTTGAGGAGGCCTTaGTGTCTTTCTGTGTCTTCACAAAGGGCCATCAAG +
Preference number: 3 (lower is better)
Translates to: LWRKVTLWLRRP*CLSVSSQRAIK
Trigger: CTTGATGGCCCTTTGTGAAGACACAGAAAGACACCAAGGCCTCCTCAACCACAGTGTGACTTTCCTCCAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 72 bp CTTTCAGTGCAGGTCATCAGTCTGTACATTCTCATCTaGCATTTGTCTTCAGGGCATAGTGGGCCCAGGAGC +
Preference number: 3 (lower is better)
Translates to: LSVQVISLYILI*HLSSGHSGPRS
Trigger: GCTCCTGGGCCCACTATGCCCTGAAGACAAATGCCAGATGAGAATGTACAGACTGATGACCTGCACTGAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CAA 90 bp TCAGTAAGAAACGGATTCGACAGAGTCACCTTGCACAAACAGGACACACTTCACTCAGTTTCAGCCATGTaGCCTTGCTGGAGTGTGGGC +
Preference number: 3 (lower is better)
Translates to: SVRNGFDRVTLHKQDTLHSVSAM*PCWSVG
Trigger: GCCCACACTCCAGCAAGGCAACATGGCTGAAACTGA...GTGAAGTGTGTCCTGTTTGTGCAAGGTGACTCTGTCGAATCCGTTTCTTACTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR TCA 72 bp AAGGTCCCAATCTGTTCTCCGTACTGTGTCCCTCAGTaGCAGGAGCCAATGGACAAAGACAATAGGACGTTG +
Preference number: 3 (lower is better)
Translates to: KVPICSPYCVPQ*QEPMDKDNRTL
Trigger: CAACGTCCTATTGTCTTTGTCCATTGGCTCCTGTCACTGAGGGACACAGTACGGAGAACAGATTGGGACCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR TCA 72 bp CACGTGTGCAGAGGTCAGCGGATAGTTTGCAGGAGTTaGCTCTCTTCTTCTACCTGTGGGTTCTACTCACTT +
Preference number: 3 (lower is better)
Translates to: HVCRGQRIVCRS*LSSSTCGFYSL
Trigger: AAGTGAGTAGAACCCACAGGTAGAAGAAGAGAGTCAACTCCTGCAAACTATCCGCTGACCTCTGCACACGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 72 bp ACCTATGTTGACAGACACTCGAGAGACCTCAAGGCGTaGATGCGAGTTACCTTGGCTGAGCTTGGTTCATTA +
Preference number: 3 (lower is better)
Translates to: TYVDRHSRDLKA*MRVTLAELGSL
Trigger: TAATGAACCAAGCTCAGCCAAGGTAACTCGCATGCACGCCTTGAGGTCTCTCGAGTGTCTGTCAACATAGGT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 72 bp GCCAGCTGCAGAAAACACACACAGCTTTCCAATGTTTaGAGCCATGGGTGCACACAGTGTGAGAACTGTGAA +
Preference number: 3 (lower is better)
Translates to: ASCRKHTQLSNV*SHGCTQCENCE
Trigger: TTCACAGTTCTCACACTGTGTGCACCCATGGCTGCAAACATTGGAAAGCTGTGTGTGTTTTCTGCAGCTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 72 bp TGCAATACAAATCCTGACTGGGCAGGGATGCTGTCCTaGCCAGGAATGACACAGAGGAGTTCCTTTAAATGG +
Preference number: 3 (lower is better)
Translates to: CNTNPDWAGMLS*PGMTQRSSFKW
Trigger: CCATTTAAAGGAACTCCTCTGTGTCATTCCTGGGCAGGACAGCATCCCTGCCCAGTCAGGATTTGTATTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CAA 90 bp GTTTGCAGCCATGGGTGCACACAGTGTGAGAACTGTGAATCTGAACTCCAGTTCAGCTCCATTGTTGTGTaGTCCTCTCTGCTGTTCAGA +
Preference number: 3 (lower is better)
Translates to: VCSHGCTQCENCESELQFSSIVV*SSLLFR
Trigger: TCTGAACAGCAGAGAGGACAACACAACAATGGAGCT...GAACTGGAGTTCAGATTCACAGTTCTCACACTGTGTGCACCCATGGCTGCAAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CAA 90 bp TGTGAGAACTGTGAATCTGAACTCCAGTTCCTGAAAGTGGGAGGGGTAGGATGGGGGAATACAAATAGCTaGAAGCAGAGGCTGACTACC +
Preference number: 3 (lower is better)
Translates to: CENCESELQFLKVGGVGWGNTNS*KQRLTT
Trigger: GGTAGTCAGCCTCTGCTTCAAGCTATTTGTATTCCC...CCATCCTACCCCTCCCACTTTCAGGAACTGGAGTTCAGATTCACAGTTCTCACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR TCA 72 bp AAATGTGGAAGGTCTGAAGCCTATCTGAGTGCCAGGTaGGCTCCATTGTTGTGTTGTCCTCTCTGCTGTTCA +
Preference number: 3 (lower is better)
Translates to: KCGRSEAYLSAR*APLLCCPLCCS
Trigger: TGAACAGCAGAGAGGACAACACAACAATGGAGCTCACCTGGCACTCAGATAGGCTTCAGACCTTCCACATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR TCA 72 bp AGATCACTCTGGAAGCAACTTCCCAGAGAACCTCCCTaGAAAGAGTTTCTCCTCAACTTTCCCCCATCCTCA +
Preference number: 3 (lower is better)
Translates to: RSLWKQLPREPP*KEFLLNFPPSS
Trigger: TGAGGATGGGGGAAAGTTGAGGAGAAACTCTTTTCAGGGAGGTTCTCTGGGAAGTTGCTTCCAGAGTGATCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 72 bp GTCAAAATGGAGATCTGTTTGTTTCTGGCCTCTTGCTaGATCCTCCAGGAGAGTGAGCAAGGAATCTGGAAG +
Preference number: 3 (lower is better)
Translates to: VKMEICLFLASC*ILQESEQGIWK
Trigger: CTTCCAGATTCCTTGCTCACTCTCCTGGAGGATGCAGCAAGAGGCCAGAAACAAACAGATCTCCATTTTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 72 bp TGCCTGGCTCCATCTTCCAGGTGCTGGGATCAAAACTaGATCACACATTCCTGCCTGACTCTTGTTTCAATT +
Preference number: 3 (lower is better)
Translates to: CLAPSSRCWDQN*ITHSCLTLVSI
Trigger: AATTGAAACAAGAGTCAGGCAGGAATGTGTGATGCAGTTTTGATCCCAGCACCTGGAAGATGGAGCCAGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 72 bp AAAAGCCACATCTATGTCCCAGTAACTGAGTCCACATaGAATACAAATCCTGACTGGGCAGGGATGCTGTCC +
Preference number: 3 (lower is better)
Translates to: KSHIYVPVTEST*NTNPDWAGMLS
Trigger: GGACAGCATCCCTGCCCAGTCAGGATTTGTATTGCATGTGGACTCAGTTACTGGGACATAGATGTGGCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 72 bp CATCAAGGCCTCTTCAAGGAAGTAGATAATCAACAGTaGGAACTGGTACCCTCTGTCCCCAGGCCTGATTTA +
Preference number: 3 (lower is better)
Translates to: HQGLFKEVDNQQ*ELVPSVPRPDL
Trigger: TAAATCAGGCCTGGGGACAGAGGGTACCAGTTCCCACTGTTGATTATCTACTTCCTTGAAGAGGCCTTGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 72 bp GGTGAGGACATTGATTTAAGGGCTGGTAATATCAAATaGGACCACGGCAACCACCACTGTCCCCTTTGTTGT +
Preference number: 3 (lower is better)
Translates to: GEDIDLRAGNIK*DHGNHHCPLCC
Trigger: ACAACAAAGGGGACAGTGGTGGTTGCCGTGGTCCCATTTGATATTACCAGCCCTTAAATCAATGTCCTCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CAA 90 bp TCAGTAAGAAACGGATTCGACAGAGTCACCTTGCACAAACAGGACACACTTCACAAAGTCACACTGTGGTaGAGGAGGCCTTGGTGTCTT +
Preference number: 3 (lower is better)
Translates to: SVRNGFDRVTLHKQDTLHKVTLW*RRPWCL
Trigger: AAGACACCAAGGCCTCCTCAACCACAGTGTGACTTT...GTGAAGTGTGTCCTGTTTGTGCAAGGTGACTCTGTCGAATCCGTTTCTTACTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CAA 90 bp TGGGGTCATGAAGCTAACAGGAATGGATTGGCTGCCCATGGCCTTGACTCCTTTGCAGGGAACCGTTTTTaGTTGTTTGTTTGCTTTTGC +
Preference number: 3 (lower is better)
Translates to: WGHEANRNGLAAHGLDSFAGNRF*LFVCFC
Trigger: GCAAAAGCAAACAAACAACAAAAAACGGTTCCCTGC...AAAGGAGTCAAGGCCATGGGCAGCCAATCCATTCCTGTTAGCTTCATGACCCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CAA 90 bp CCAAAGACTGGGTTTGTGATCTCTCCTACTTACTGCTACTGGAACGGGAATCCAGGTGAGATAAGTTCATaGAGCCTGGAAGCCAGAGAA +
Preference number: 3 (lower is better)
Translates to: PKTGFVISPTYCYWNGNPGEISS*SLEARE
Trigger: TTCTCTGGCTTCCAGGCTCAATGAACTTATCTCACC...TGGATTCCCGTTCCAGTAGCAGTAAGTAGGAGAGATCACAAACCCAGTCTTTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CAA 90 bp TCAACTTTCCCCCATCCTCACCGGCAGCATACATTGTACCCAGGGAAGAGAGTTAAGACATCGATTCTTTaGTCATTCCTGTGGTTGGTT +
Preference number: 3 (lower is better)
Translates to: STFPHPHRQHTLYPGKRVKTSIL*SFLWLV
Trigger: AACCAACCACAGGAATGACAAAAGAATCGATGTCTT...AACTCTCTTCCCTGGGTACAATGTATGCTGCCGGTGAGGATGGGGGAAAGTTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CAA 90 bp AAGCAGAGGACCAATGAGAGCACTGTATGTTATGCACACACTCGGGTCCAATTCAGTCACAGTCATAGTTaGCACCACAAAAGCCATCCA +
Preference number: 3 (lower is better)
Translates to: KQRTNESTVCYAHTRVQFSHSHS*HHKSHP
Trigger: TGGATGGCTTTTGTGGTGCAAACTATGACTGTGACT...GAATTGGACCCGAGTGTGTGCATAACATACAGTGCTCTCATTGGTCCTCTGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CAA 90 bp CCAAAGACTGGGTTTGTGATCTCTCCTACTTACTGCTACTGGAACGGGAATCCAGAAAAGAAGGGGTCATaGTGGTTGTTCTGGAAGTCT +
Preference number: 3 (lower is better)
Translates to: PKTGFVISPTYCYWNGNPEKKGS*WLFWKS
Trigger: AGACTTCCAGAACAACCACAATGACCCCTTCTTTTC...TGGATTCCCGTTCCAGTAGCAGTAAGTAGGAGAGATCACAAACCCAGTCTTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CAA 90 bp TCAGTAAGAAACGGATTCGACAGAGTCACCTTGCACAAACAGGACACACTTCACGCTTACAAAACTGAGTaGACAAGAATGGCCAGTGCC +
Preference number: 3 (lower is better)
Translates to: SVRNGFDRVTLHKQDTLHAYKTE*TRMASA
Trigger: GGCACTGGCCATTCTTGTCAACTCAGTTTTGTAAGC...GTGAAGTGTGTCCTGTTTGTGCAAGGTGACTCTGTCGAATCCGTTTCTTACTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CAA 90 bp GGTTCTGGTGTTCATTTGATTCCCTGTAGGGAGAAGGTCAATACTATCAAATGCGAGCCAGGGAGCCTTTaGCTTCTCTTAGACACAAGC +
Preference number: 3 (lower is better)
Translates to: GSGVHLIPCREKVNTIKCEPGSL*LLLDTS
Trigger: GCTTGTGTCTAAGAGAAGCAAAAGGCTCCCTGGCTC...GCATTTGATAGTATTGACCTTCTCCCTACAGGGAATCAAATGAACACCAGAACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CAA 90 bp TGTGAGAACTGTGAATCTGAACTCCAGTTCCTGAAAGTGGGAGGGGTAGGATGGACCCAGGGAAGAGAGTaGAATAAGAGAAGGTTAAGT +
Preference number: 3 (lower is better)
Translates to: CENCESELQFLKVGGVGWTQGRE*NKRRLS
Trigger: ACTTAACCTTCTCTTATTCAACTCTCTTCCCTGGGT...CCATCCTACCCCTCCCACTTTCAGGAACTGGAGTTCAGATTCACAGTTCTCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CAA 90 bp TGTGAGAACTGTGAATCTGAACTCCAGTTCCTGAAAGTGGGAGGGGTAGGATGGGACAAAGGCACTATTTaGTACCTCTTTCCTACTCTC +
Preference number: 3 (lower is better)
Translates to: CENCESELQFLKVGGVGWDKGTI*YLFPTL
Trigger: GAGAGTAGGAAAGAGGTACAAAATAGTGCCTTTGTC...CCATCCTACCCCTCCCACTTTCAGGAACTGGAGTTCAGATTCACAGTTCTCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CAA 90 bp GTTTGCAGCCATGGGTGCACACAGTGTGAGAACTGTGAATCTGAACTCCAGTTCCTTCTCTCTCATATGTaGCTCTTGATGGTTCCAAGA +
Preference number: 3 (lower is better)
Translates to: VCSHGCTQCENCESELQFLLSHM*LLMVPR
Trigger: TCTTGGAACCATCAAGAGCAACATATGAGAGAGAAG...GAACTGGAGTTCAGATTCACAGTTCTCACACTGTGTGCACCCATGGCTGCAAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CAA 90 bp CCAAAGACTGGGTTTGTGATCTCTCCTACTTACTGCTACTGGAACGGGAATCCAGATCAAGGAGGAATTTaGAGCCCAGGGATTGGTAAA +
Preference number: 3 (lower is better)
Translates to: PKTGFVISPTYCYWNGNPDQGGI*SPGIGK
Trigger: TTTACCAATCCCTGGGCTCAAAATTCCTCCTTGATC...TGGATTCCCGTTCCAGTAGCAGTAAGTAGGAGAGATCACAAACCCAGTCTTTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR TCA 72 bp CATGGCAAGGATGGAATAATGGAAATGTGGAAGGTCTaGAGCCTATCTGAGTGCCAGGTGAGCTCCATTGTT +
Preference number: 3 (lower is better)
Translates to: HGKDGIMEMWKV*SLSECQVSSIV
Trigger: AACAATGGAGCTCACCTGGCACTCAGATAGGCTTCAGACCTTCCACATTTCCATTATTCCATCCTTGCCATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR TCA 72 bp GTTTCAGCCATGTTGCCTTGCTGGAGTGTGGGCAGTTaGGCTAAGAGCTTGCTTCTCATTGATAAGGATTGT +
Preference number: 3 (lower is better)
Translates to: VSAMLPCWSVGS*AKSLLLIDKDC
Trigger: ACAATCCTTATCAATGAGAAGCAAGCTCTTAGCTCAACTGCCCACACTCCAGCAAGGCAACATGGCTGAAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 72 bp CAGAAATGTTCTAAACATCCCGGGCCCACAGAGTTTTaGAGAGGAAAACAAGGGTTCAGGCAACTGAAACCA +
Preference number: 3 (lower is better)
Translates to: QKCSKHPGPTEF*RGKQGFRQLKP
Trigger: TGGTTTCAGTTGCCTGAACCCTTGTTTTCCTCTGCAAAACTCTGTGGGCCCGGGATGTTTAGAACATTTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 72 bp TCATTCCTTTGGCTTAAGGCTGTTCCCCTGTTCAAATaGAAGCAGCCCTCAGAAAAGGTAGCATTAAGCCTC +
Preference number: 3 (lower is better)
Translates to: SFLWLKAVPLFK*KQPSEKVALSL
Trigger: GAGGCTTAATGCTACCTTTTCTGAGGGCTGCTTGCATTTGAACAGGGGAACAGCCTTAAGCCAAAGGAATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 72 bp AAACACACACAGCTTTCCAATGTTTGCAGCCATGGGTaGACACAGTGTGAGAACTGTGAATCTGAACTCCAG +
Preference number: 3 (lower is better)
Translates to: KHTQLSNVCSHG*TQCENCESELQ
Trigger: CTGGAGTTCAGATTCACAGTTCTCACACTGTGTGCACCCATGGCTGCAAACATTGGAAAGCTGTGTGTGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 72 bp GGGAATACAAATAGCTTGAAGCAGAGGCTGACTACCTaGGGCCAATTTGAGTTCCCTCCAACTTACTGTCTA +
Preference number: 3 (lower is better)
Translates to: GNTNSLKQRLTT*GQFEFPPTYCL
Trigger: TAGACAGTAAGTTGGAGGGAACTCAAATTGGCCCCAGGTAGTCAGCCTCTGCTTCAAGCTATTTGTATTCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 72 bp ATATCAGCCCACAGAGGGCTCTCTTCTAGTTTGTGTTaGAATCCTCCAAAGACTGGGTTTGTGATCTCTCCT +
Preference number: 3 (lower is better)
Translates to: ISAHRGLSSSLC*NPPKTGFVISP
Trigger: AGGAGAGATCACAAACCCAGTCTTTGGAGGATTCCAACACAAACTAGAAGAGAGCCCTCTGTGGGCTGATAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CAA 90 bp GCATGCCACAGTCTGAAGATTTCACAAAAAGATGAGGAAGGTAAGGTTCTAGTATTTGTGGCTGAGCTGTaGGTACCAGTGCAGTTCACG +
Preference number: 3 (lower is better)
Translates to: ACHSLKISQKDEEGKVLVFVAEL*VPVQFT
Trigger: CGTGAACTGCACTGGTACCAACAGCTCAGCCACAAA...TACTAGAACCTTACCTTCCTCATCTTTTTGTGAAATCTTCAGACTGTGGCATGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR TCA 72 bp CTCCCGGTCTCAAAGCAAACGAATCCATCCCTTTCCTaGGAGCATGTTTTCTTCTTAGGAGGAGAACAAAGT +
Preference number: 3 (lower is better)
Translates to: LPVSKQTNPSLS*EHVFFLGGEQS
Trigger: ACTTTGTTCTCCTCCTAAGAAGAAAACATGCTCTCAGGAAAGGGATGGATTCGTTTGCTTTGAGACCGGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR TCA 72 bp TTCTTCACCAGCACACATATGGAGGAGGAATGGCTTTaGGGTGACTGGTACGGTGACTACAATGTTGTGTTT +
Preference number: 3 (lower is better)
Translates to: FFTSTHMEEEWL*GDWYGDYNVVF
Trigger: AAACACAACATTGTAGTCACCGTACCAGTCACCTCAAAGCCATTCCTCCTCCATATGTGTGCTGGTGAAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR TCA 72 bp CTAGTTTGTGTTGGAATCCTCCAAAGACTGGGTTTGTaGTCTCTCCTACTTACTGCTACTGGAACGGGAATC +
Preference number: 3 (lower is better)
Translates to: LVCVGILQRLGL*SLLLTATGTGI
Trigger: GATTCCCGTTCCAGTAGCAGTAAGTAGGAGAGATCACAAACCCAGTCTTTGGAGGATTCCAACACAAACTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 72 bp CCCCCAGAAAGCAGGTATATGGAAATCAGGAGCTCTTaGTTTGCTTACAAAACTGAGTTGACAAGAATGGCC +
Preference number: 3 (lower is better)
Translates to: PPESRYMEIRSS*FAYKTELTRMA
Trigger: GGCCATTCTTGTCAACTCAGTTTTGTAAGCAAAGCAAGAGCTCCTGATTTCCATATACCTGCTTTCTGGGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 72 bp TGCCTTGCTGGAGTGTGGGCAGTTGAGCTAAGAGCTTaGTTCTCATTGATAAGGATTGTCAAAATGGAGATC +
Preference number: 3 (lower is better)
Translates to: CLAGVWAVELRA*FSLIRIVKMEI
Trigger: GATCTCCATTTTGACAATCCTTATCAATGAGAAGCAAGCTCTTAGCTCAACTGCCCACACTCCAGCAAGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 72 bp ATGACTTTGGAAAAGAAGGGGTCATTGTGGTTGTTCTaGAAGTCTTTCCACATCTGCTGTCTTCCACCACAG +
Preference number: 3 (lower is better)
Translates to: MTLEKKGSLWLF*KSFHICCLPPQ
Trigger: CTGTGGTGGAAGACAGCAGATGTGGAAAGACTTCCAGAACAACCACAATGACCCCTTCTTTTCCAAAGTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 72 bp CAGTGCCTGATGACTTTGGAAAAGAAGGGGTCATTGTaGTTGTTCTGGAAGTCTTTCCACATCTGCTGTCTT +
Preference number: 3 (lower is better)
Translates to: QCLMTLEKKGSL*LFWKSFHICCL
Trigger: AAGACAGCAGATGTGGAAAGACTTCCAGAACAACCACAATGACCCCTTCTTTTCCAAAGTCATCAGGCACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 72 bp TTCTTTAGGACTAGGTCCACTCCTGCAAACACTGAATaGACATTCCCAGGCCTAAGTCTTTTCTCTGACTGT +
Preference number: 3 (lower is better)
Translates to: FFRTRSTPANTE*TFPGLSLFSDC
Trigger: ACAGTCAGAGAAAAGACTTAGGCCTGGGAATGTCCATTCAGTGTTTGCAGGAGTGGACCTAGTCCTAAAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CAA 90 bp TGTGAGAACTGTGAATCTGAACTCCAGTTCCTGAAAGTGGGAGGGGTAGGATGGAGAGCTTGCTTCTCATaGATAAGGATTGTCAAAATG +
Preference number: 3 (lower is better)
Translates to: CENCESELQFLKVGGVGWRACFS*IRIVKM
Trigger: CATTTTGACAATCCTTATCAATGAGAAGCAAGCTCT...CCATCCTACCCCTCCCACTTTCAGGAACTGGAGTTCAGATTCACAGTTCTCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR GCA 72 bp TCCAGGTGCTGGGATCAAAACTGCATCACACATTCCTaGCTGACTCTTGTTTCAATTCAGTCAAAACTTAGG +
Preference number: 3 (lower is better)
Translates to: SRCWDQNCITHS*LTLVSIQSKLR
Trigger: CCTAAGTTTTGACTGAATTGAAACAAGAGTCAGGCAGGAATGTGTGATGCAGTTTTGATCCCAGCACCTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 72 bp CTTCATTTCCCTACAGAGGCAAATGCCTCTGTCTTTTaGAGTTCTGAGTTCAGGTCAGCTGTGATACTTCTA +
Preference number: 3 (lower is better)
Translates to: LHFPTEANASVF*SSEFRSAVILL
Trigger: TAGAAGTATCACAGCTGACCTGAACTCAGAACTCCAAAAGACAGAGGCATTTGCCTCTGTAGGGAAATGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CAA 90 bp TTCCCAGGCCTAAGTCTTTTCTCTGACTGTGAAGTCTCTGCCCCAAATCCTTTTAGCATGGCTGCCTTTTaGATTTTGAGTGGATCTTTT +
Preference number: 3 (lower is better)
Translates to: FPGLSLFSDCEVSAPNPFSMAAF*ILSGSF
Trigger: AAAAGATCCACTCAAAATCAAAAAGGCAGCCATGCT...AAAAGGATTTGGGGCAGAGACTTCACAGTCAGAGAAAAGACTTAGGCCTGGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR TCA 72 bp GGTGCTGGGATCAAAACTGCATCACACATTCCTGCCTaGCTCTTGTTTCAATTCAGTCAAAACTTAGGAAAC +
Preference number: 3 (lower is better)
Translates to: GAGIKTASHIPA*LLFQFSQNLGN
Trigger: GTTTCCTAAGTTTTGACTGAATTGAAACAAGAGTCAGGCAGGAATGTGTGATGCAGTTTTGATCCCAGCACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR TCA 72 bp TCATATGTTGCTCTTGATGGTTCCAAGATCACACTTTaGGAACCAGTGGCCTATATTTGGGCCTTTACTGAA +
Preference number: 3 (lower is better)
Translates to: SYVALDGSKITL*EPVAYIWAFTE
Trigger: TTCAGTAAAGGCCCAAATATAGGCCACTGGTTCTCAAAGTGTGATCTTGGAACCATCAAGAGCAACATATGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CAA 90 bp GCATGCCACAGTCTGAAGATTTCACAAAAAGATGAGGAAGGTAAGGTTCTAGTAAAAGACAATAGGACGTaGAAAAGGTGGCTCTCCAAT +
Preference number: 3 (lower is better)
Translates to: ACHSLKISQKDEEGKVLVKDNRT*KRWLSN
Trigger: ATTGGAGAGCCACCTTTTCAACGTCCTATTGTCTTT...TACTAGAACCTTACCTTCCTCATCTTTTTGTGAAATCTTCAGACTGTGGCATGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CAA 90 bp ATTCCCTGTAGGGAGAAGGTCAATACTATCAAATGCCACACTTTTTACATTAAGAAGGGGTCATTGTGGTaGTTCTGGAAGTCTTTCCAC +
Preference number: 3 (lower is better)
Translates to: IPCREKVNTIKCHTFYIKKGSLW*FWKSFH
Trigger: GTGGAAAGACTTCCAGAACAACCACAATGACCCCTT...CTTAATGTAAAAAGTGTGGCATTTGATAGTATTGACCTTCTCCCTACAGGGAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR-3UTR CAA 90 bp ATTCCCTGTAGGGAGAAGGTCAATACTATCAAATGCCACACTTTTTACATTAAGAAAATGGAGATCTGTTaGTTTCTGGCCTCTTGCTGC +
Preference number: 3 (lower is better)
Translates to: IPCREKVNTIKCHTFYIKKMEIC*FLASCC
Trigger: GCAGCAAGAGGCCAGAAACAAACAGATCTCCATTTT...CTTAATGTAAAAAGTGTGGCATTTGATAGTATTGACCTTCTCCCTACAGGGAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR TCA 72 bp GTGATTCAGGGGGTCAGCCTTTCATGGTTTGTGAGTTaGGAATGGTTTTCTTATGTTCCTAAGGTTGTAAAA +
Preference number: 3 (lower is better)
Translates to: VIQGVSLSWFVS*EWFSYVPKVVK
Trigger: TTTTACAACCTTAGGAACATAAGAAAACCATTCTCAACTCACAAACCATGAAAGGCTGACCCCCTGAATCAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 72 bp CTCTTGATGGTTCCAAGATCACACTTTGAGAACCAGTaGCCTATATTTGGGCCTTTACTGAACAAAAGTATA +
Preference number: 3 (lower is better)
Translates to: LLMVPRSHFENQ*PIFGPLLNKSI
Trigger: TATACTTTTGTTCAGTAAAGGCCCAAATATAGGCCACTGGTTCTCAAAGTGTGATCTTGGAACCATCAAGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 72 bp AGATATGTGTGTATTCTGGGTTTGAAAGTCAGCCTATaGAACCAGGAAGTTGGTGATTTTTCCAGGAAATTG +
Preference number: 3 (lower is better)
Translates to: RYVCILGLKVSL*NQEVGDFSRKL
Trigger: CAATTTCCTGGAAAAATCACCAACTTCCTGGTTCCATAGGCTGACTTTCAAACCCAGAATACACACATATCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CCA 72 bp TTTGAAATTTTAGATTTCGGGAAAGAGATGGATCCCTaGGCTCAAAAGACAGAAATCAAGCTAAAGGGCCTA +
Preference number: 3 (lower is better)
Translates to: FEILDFGKEMDP*AQKTEIKLKGL
Trigger: TAGGCCCTTTAGCTTGATTTCTGTCTTTTGAGCCCAGGGATCCATCTCTTTCCCGAAATCTAAAATTTCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR TCA 72 bp CTAAGTACTTCCTGTAAAATGAATGTTACATGCAAGTaGAATGAGCGTTCTTGGAGTATACAGCATGAGCTG +
Preference number: 3 (lower is better)
Translates to: LSTSCKMNVTCK*NERSWSIQHEL
Trigger: CAGCTCATGCTGTATACTCCAAGAACGCTCATTTCACTTGCATGTAACATTCATTTTACAGGAAGTACTTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp GGACTGGAGGACAAGTTGGAGGCCCATGCAGGCCAGGAGTACAGGCAAAGGGGACATGCCGGGATGGTCTaGGGCACTGCGTGCCTGGTG +
Preference number: 4 (lower is better)
Translates to: GLEDKLEAHAGQEYRQRGHAGMV*GTACLV
Trigger: CACCAGGCACGCAGTGCCTCAGACCATCCCGGCATG...TCCCCTTTGCCTGTACTCCTGGCCTGCATGGGCCTCCAACTTGTCCTCCAGTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp TACCTGTTCATGCTGAGGCATCGTGCCAGCCTCACCCACTTTACACATGGGGCTGCGGCTGCGGAGGGTTaGGCGGGCACAGACGCTGGG +
Preference number: 4 (lower is better)
Translates to: YLFMLRHRASLTHFTHGAAAAEG*AGTDAG
Trigger: CCCAGCGTCTGTGCCCGCGCAACCCTCCGCAGCCGC...AGCCCCATGTGTAAAGTGGGTGAGGCTGGCACGATGCCTCAGCATGAACAGGTA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp TACCTGTTCATGCTGAGGCATCGTGCCAGCCTCACCCACTTTACACATGGGGCTCCCAGAGCCAGCAGGTaGCCCTCGAGGTCCTCCAGC +
Preference number: 4 (lower is better)
Translates to: YLFMLRHRASLTHFTHGAPRASR*PSRSSS
Trigger: GCTGGAGGACCTCGAGGGGCACCTGCTGGCTCTGGG...AGCCCCATGTGTAAAGTGGGTGAGGCTGGCACGATGCCTCAGCATGAACAGGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp GGACTGGAGGACAAGTTGGAGGCCCATGCAGGCCAGGAGTACAGGCAAAGGGGAGATGGTCTGAGGCACTaGGTGCCTGGTGAGCGTCTC +
Preference number: 4 (lower is better)
Translates to: GLEDKLEAHAGQEYRQRGDGLRH*VPGERL
Trigger: GAGACGCTCACCAGGCACGCAGTGCCTCAGACCATC...TCCCCTTTGCCTGTACTCCTGGCCTGCATGGGCCTCCAACTTGTCCTCCAGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp TACCTGTTCATGCTGAGGCATCGTGCCAGCCTCACCCACTTTACACATGGGGCTAGCAGAGCCAGCGAGTaGCCGCAGAGGTCTGCGAGC +
Preference number: 4 (lower is better)
Translates to: YLFMLRHRASLTHFTHGASRASE*PQRSAS
Trigger: GCTCGCAGACCTCTGCGGCCACTCGCTGGCTCTGCT...AGCCCCATGTGTAAAGTGGGTGAGGCTGGCACGATGCCTCAGCATGAACAGGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp GGACTGGAGGACAAGTTGGAGGCCCATGCAGGCCAGGAGTACAGGCAAAGGGGAGAGCATTGGCACAGCTaGGTGACCTTGAGCATCTGG +
Preference number: 4 (lower is better)
Translates to: GLEDKLEAHAGQEYRQRGEHWHS*VTLSIW
Trigger: CCAGATGCTCAAGGTCACCCAGCTGTGCCAATGCTC...TCCCCTTTGCCTGTACTCCTGGCCTGCATGGGCCTCCAACTTGTCCTCCAGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp TACCTGTTCATGCTGAGGCATCGTGCCAGCCTCACCCACTTTACACATGGGGCTACTGCTACTTGGCCCTaGGGCAGCAGCAGCCTCACC +
Preference number: 4 (lower is better)
Translates to: YLFMLRHRASLTHFTHGATATWP*GSSSLT
Trigger: GGTGAGGCTGCTGCTGCCCCAGGGCCAAGTAGCAGT...AGCCCCATGTGTAAAGTGGGTGAGGCTGGCACGATGCCTCAGCATGAACAGGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp TTCCCAGGCCTAAGTCTTTTCTCTGACTGTGAAGTCTCTGCCCCAAATCCTTTTCAGCAGCTCGGCCGCTaGGGGGCGGGTCCTGGGAGT +
Preference number: 4 (lower is better)
Translates to: FPGLSLFSDCEVSAPNPFQQLGR*GAGPGS
Trigger: ACTCCCAGGACCCGCCCCTCAGCGGCCGAGCTGCTG...AAAAGGATTTGGGGCAGAGACTTCACAGTCAGAGAAAAGACTTAGGCCTGGGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp GTTGGCCAAATAGCAGTACCTAGATGGCAAAAAGTAGCCCTTGTATCCTGGGCCCTGAGCGCGGCCAGGTaGCTCACGTCGCGGAGCTCA +
Preference number: 4 (lower is better)
Translates to: VGQIAVPRWQKVALVSWALSAAR*LTSRSS
Trigger: TGAGCTCCGCGACGTGAGCCACCTGGCCGCGCTCAG...GGCCCAGGATACAAGGGCTACTTTTTGCCATCTAGGTACTGCTATTTGGCCAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp TGGGGTCATGAAGCTAACAGGAATGGATTGGCTGCCCATGGCCTTGACTCCTTTGGGGCCCTCACACCCTaGGTCGTGGTCTCATCCTCG +
Preference number: 4 (lower is better)
Translates to: WGHEANRNGLAAHGLDSFGALTP*VVVSSS
Trigger: CGAGGATGAGACCACGACCCAGGGTGTGAGGGCCCC...AAAGGAGTCAAGGCCATGGGCAGCCAATCCATTCCTGTTAGCTTCATGACCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp TCAACTTTCCCCCATCCTCACCGGCAGCATACATTGTACCCAGGGAAGAGAGTTGGGCCAGGCTGCCTGTaGGGCTGCTGCTGTGACCTT +
Preference number: 4 (lower is better)
Translates to: STFPHPHRQHTLYPGKRVGPGCL*GCCCDL
Trigger: AAGGTCACAGCAGCAGCCCCACAGGCAGCCTGGCCC...AACTCTCTTCCCTGGGTACAATGTATGCTGCCGGTGAGGATGGGGGAAAGTTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CAA 72 bp CAGTGCAGTTCACGGGTGTTAGGACTGGAGGACAAGTaGGAGGCCCATGCAGGCCAGGAGTACAGGCAAAGG +
Preference number: 4 (lower is better)
Translates to: QCSSRVLGLEDK*EAHAGQEYRQR
Trigger: CCTTTGCCTGTACTCCTGGCCTGCATGGGCCTCCAACTTGTCCTCCAGTCCTAACACCCGTGAACTGCACTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp GTTTGCAGCCATGGGTGCACACAGTGTGAGAACTGTGAATCTGAACTCCAGTTCCACTGGCTGTCGCCATaGCGACCTCGAGTGGGCAGT +
Preference number: 4 (lower is better)
Translates to: VCSHGCTQCENCESELQFHWLSP*RPRVGS
Trigger: ACTGCCCACTCGAGGTCGTCATGGCGACAGCCAGTG...GAACTGGAGTTCAGATTCACAGTTCTCACACTGTGTGCACCCATGGCTGCAAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp AAAATCAAATCTGCTGGAGCCCTCCTGGGGAACAGTCACCAAGGTGAGGACATTCTGAGTGGCCAGGCCTaGTGTCTGAGGTGGCAGAGC +
Preference number: 4 (lower is better)
Translates to: KIKSAGALLGNSHQGEDILSGQA*CLRWQS
Trigger: GCTCTGCCACCTCAGACATCAGGCCTGGCCACTCAG...AATGTCCTCACCTTGGTGACTGTTCCCCAGGAGGGCTCCAGCAGATTTGATTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp TTAAGAGACCATTTTCCCCTTAAGTCTGAGAGAAGTGCTAGAAGACAGTTGGTGGGCGGAGCCGGACGGTaGGCCGGTACAGGCTGTCGG +
Preference number: 4 (lower is better)
Translates to: LRDHFPLKSERSARRQLVGGAGR*AGTGCR
Trigger: CCGACAGCCTGTACCGGCGCACCGTCCGGCTCCGCC...CACCAACTGTCTTCTAGCACTTCTCTCAGACTTAAGGGGAAAATGGTCTCTTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp AACCTTGGGGTCATGAAGCTAACAGGAATGGATTGGCTGCCCATGGCCTTGACTTGCCTGTGGGGCTGCTaGTGTGACCTTGGTCTCGCT +
Preference number: 4 (lower is better)
Translates to: NLGVMKLTGMDWLPMALTCLWGC*CDLGLA
Trigger: AGCGAGACCAAGGTCACAGCAGCAGCCCCACAGGCA...AGTCAAGGCCATGGGCAGCCAATCCATTCCTGTTAGCTTCATGACCCCAAGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp CCTGCAAACACTGAATGGACATTCCCAGGCCTAAGTCTTTTCTCTGACTGTGAACAGAGCGGGCCAGGCTaGCTGTGGGGCTGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: PANTEWTFPGLSLFSDCEQSGPG*LWGCCC
Trigger: ACAGCAGCAGCCCCACAGGCAGCCTGGCCCGCTCTG...TTCACAGTCAGAGAAAAGACTTAGGCCTGGGAATGTCCATTCAGTGTTTGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp TCAACTTTCCCCCATCCTCACCGGCAGCATACATTGTACCCAGGGAAGAGAGTTGCCTCAGGGTGGACTTaGGGTTCACGGCTGTCTCTG +
Preference number: 4 (lower is better)
Translates to: STFPHPHRQHTLYPGKRVASGWT*GSRLSL
Trigger: CAGAGACAGCCGTGAACCCCAAGTCCACCCTGAGGC...AACTCTCTTCCCTGGGTACAATGTATGCTGCCGGTGAGGATGGGGGAAAGTTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp TACCTGTTCATGCTGAGGCATCGTGCCAGCCTCACCCACTTTACACATGGGGCTGATTGCCCTGGCTGCTaGCACTTGGGGTCATGTATG +
Preference number: 4 (lower is better)
Translates to: YLFMLRHRASLTHFTHGADCPGC*HLGSCM
Trigger: CATACATGACCCCAAGTGCCAGCAGCCAGGGCAATC...AGCCCCATGTGTAAAGTGGGTGAGGCTGGCACGATGCCTCAGCATGAACAGGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp TGGGGTCATGAAGCTAACAGGAATGGATTGGCTGCCCATGGCCTTGACTCCTTTTGCCGGTGGCAGTGCTaGAGCTGGACAAGGACTGGT +
Preference number: 4 (lower is better)
Translates to: WGHEANRNGLAAHGLDSFCRWQC*SWTRTG
Trigger: ACCAGTCCTTGTCCAGCTCCAGCACTGCCACCGGCA...AAAGGAGTCAAGGCCATGGGCAGCCAATCCATTCCTGTTAGCTTCATGACCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CAA 72 bp ACAGGAATGGATTGGCTGCCCATGGCCTTGACTCCTTaGTGGCTGAGCTGTTGGTACCAGTGCAGTTCACGG +
Preference number: 4 (lower is better)
Translates to: TGMDWLPMALTP*WLSCWYQCSSR
Trigger: CCGTGAACTGCACTGGTACCAACAGCTCAGCCACAAAGGAGTCAAGGCCATGGGCAGCCAATCCATTCCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp TGTGAGAACTGTGAATCTGAACTCCAGTTCCTGAAAGTGGGAGGGGTAGGATGGGAGCTACAGGGGAGGTaGGAGGCAGGTAGAGCACAC +
Preference number: 4 (lower is better)
Translates to: CENCESELQFLKVGGVGWELQGR*EAGRAH
Trigger: GTGTGCTCTACCTGCCTCTCACCTCCCCTGTAGCTC...CCATCCTACCCCTCCCACTTTCAGGAACTGGAGTTCAGATTCACAGTTCTCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp GGTTCTGGTGTTCATTTGATTCCCTGTAGGGAGAAGGTCAATACTATCAAATGCAGCTCAGCCAGCGGCTaGGGAGGGTTGCGCGGGCAC +
Preference number: 4 (lower is better)
Translates to: GSGVHLIPCREKVNTIKCSSASG*GGLRGH
Trigger: GTGCCCGCGCAACCCTCCGCAGCCGCTGGCTGAGCT...GCATTTGATAGTATTGACCTTCTCCCTACAGGGAATCAAATGAACACCAGAACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp AAGCAGAGGACCAATGAGAGCACTGTATGTTATGCACACACTCGGGTCCAATTCCTACACTCGGGGGCCTaGCCGAGGAGAGGAACACGT +
Preference number: 4 (lower is better)
Translates to: KQRTNESTVCYAHTRVQFLHSGA*PRRGTR
Trigger: ACGTGTTCCTCTCCTCGGGCAGGCCCCCGAGTGTAG...GAATTGGACCCGAGTGTGTGCATAACATACAGTGCTCTCATTGGTCCTCTGCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp TGTGAGAACTGTGAATCTGAACTCCAGTTCCTGAAAGTGGGAGGGGTAGGATGGGAAGAGCGGAAGGTCTaGCCCAGAAGTCTGGCCTCC +
Preference number: 4 (lower is better)
Translates to: CENCESELQFLKVGGVGWEERKV*PRSLAS
Trigger: GGAGGCCAGACTTCTGGGGCAGACCTTCCGCTCTTC...CCATCCTACCCCTCCCACTTTCAGGAACTGGAGTTCAGATTCACAGTTCTCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp TCTGGCAACAAATGGAGAAACAGCAAAGAAACATTTGGTGCAGAACCTGCCCCCCTGTGCCGTGCCTCCTaGTCAGTGCTGAGGGCTGCA +
Preference number: 4 (lower is better)
Translates to: SGNKWRNSKETFGAEPAPLCRAS*SVLRAA
Trigger: TGCAGCCCTCAGCACTGAGCAGGAGGCACGGCACAG...GGGGGCAGGTTCTGCACCAAATGTTTCTTTGCTGTTTCTCCATTTGTTGCCAGA
54% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp TGTGAGAACTGTGAATCTGAACTCCAGTTCCTGAAAGTGGGAGGGGTAGGATGGTGGTGCCGGTGGCAGTaGTGGAGCTGGACAAGGACT +
Preference number: 4 (lower is better)
Translates to: CENCESELQFLKVGGVGWWCRWQ*WSWTRT
Trigger: AGTCCTTGTCCAGCTCCAGCACTGCCACCGGCACCA...CCATCCTACCCCTCCCACTTTCAGGAACTGGAGTTCAGATTCACAGTTCTCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp GCATGCCACAGTCTGAAGATTTCACAAAAAGATGAGGAAGGTAAGGTTCTAGTACGCGGGCACAGACGCTaGGGCACCACAGTGCGCCGG +
Preference number: 4 (lower is better)
Translates to: ACHSLKISQKDEEGKVLVRGHRR*GTTVRR
Trigger: CCGGCGCACTGTGGTGCCCCAGCGTCTGTGCCCGCG...TACTAGAACCTTACCTTCCTCATCTTTTTGTGAAATCTTCAGACTGTGGCATGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp TCATTCTCACACCAAGGCGGAGTCAAAGCACAAAACAGAGACAAAATGGCAGGAGGCAGACTGGGGCCTTaGGCTGGGAGTAGGCTCAGG +
Preference number: 4 (lower is better)
Translates to: SFSHQGGVKAQNRDKMAGGRLGP*AGSRLR
Trigger: CCTGAGCCTACTCCCAGCCCAAGGCCCCAGTCTGCC...TCCTGCCATTTTGTCTCTGTTTTGTGCTTTGACTCCGCCTTGGTGTGAGAATGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp GTTGGCCAAATAGCAGTACCTAGATGGCAAAAAGTAGCCCTTGTATCCTGGGCCAGACGCTTGGCAGACTaGGGCCTTGGGCTGGGAGTA +
Preference number: 4 (lower is better)
Translates to: VGQIAVPRWQKVALVSWARRLAD*GLGLGV
Trigger: TACTCCCAGCCCAAGGCCCCAGTCTGCCAAGCGTCT...GGCCCAGGATACAAGGGCTACTTTTTGCCATCTAGGTACTGCTATTTGGCCAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp TGTGAGAACTGTGAATCTGAACTCCAGTTCCTGAAAGTGGGAGGGGTAGGATGGCAAACTCCAGACGCTTaGCAGACTGGGGCCTTGGGC +
Preference number: 4 (lower is better)
Translates to: CENCESELQFLKVGGVGWQTPDA*QTGALG
Trigger: GCCCAAGGCCCCAGTCTGCCAAGCGTCTGGAGTTTG...CCATCCTACCCCTCCCACTTTCAGGAACTGGAGTTCAGATTCACAGTTCTCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp TACCTGTTCATGCTGAGGCATCGTGCCAGCCTCACCCACTTTACACATGGGGCTGACACTTCGCATGGGTaGAGAGGGCTTCTTTTTGGC +
Preference number: 4 (lower is better)
Translates to: YLFMLRHRASLTHFTHGADTSHG*RGLLFG
Trigger: GCCAAAAAGAAGCCCTCTCCACCCATGCGAAGTGTC...AGCCCCATGTGTAAAGTGGGTGAGGCTGGCACGATGCCTCAGCATGAACAGGTA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp TCAACTTTCCCCCATCCTCACCGGCAGCATACATTGTACCCAGGGAAGAGAGTTAGAGAGGGCGGCCTGTaGACCAAACTTGGAGGCCTT +
Preference number: 4 (lower is better)
Translates to: STFPHPHRQHTLYPGKRVREGGL*TKLGGL
Trigger: AAGGCCTCCAAGTTTGGTCCACAGGCCGCCCTCTCT...AACTCTCTTCCCTGGGTACAATGTATGCTGCCGGTGAGGATGGGGGAAAGTTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp TCTGGCAACAAATGGAGAAACAGCAAAGAAACATTTGGTGCAGAACCTGCCCCCACAGGCTCTGGAGATTaGGCTGCGCCTCGCGAAGCA +
Preference number: 4 (lower is better)
Translates to: SGNKWRNSKETFGAEPAPTGSGD*AAPREA
Trigger: TGCTTCGCGAGGCGCAGCTCAATCTCCAGAGCCTGT...GGGGGCAGGTTCTGCACCAAATGTTTCTTTGCTGTTTCTCCATTTGTTGCCAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp GTTGGCCAAATAGCAGTACCTAGATGGCAAAAAGTAGCCCTTGTATCCTGGGCCTGTGGGTACAGACAGTaGCCGCTCCCGGAACCTGTT +
Preference number: 4 (lower is better)
Translates to: VGQIAVPRWQKVALVSWACGYRQ*PLPEPV
Trigger: AACAGGTTCCGGGAGCGGTCACTGTCTGTACCCACA...GGCCCAGGATACAAGGGCTACTTTTTGCCATCTAGGTACTGCTATTTGGCCAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp GTTTGCAGCCATGGGTGCACACAGTGTGAGAACTGTGAATCTGAACTCCAGTTCCCTCCTGCTCAGTGCTaGGGGCTGCAATGTTGTCAG +
Preference number: 4 (lower is better)
Translates to: VCSHGCTQCENCESELQFPPAQC*GLQCCQ
Trigger: CTGACAACATTGCAGCCCTCAGCACTGAGCAGGAGG...GAACTGGAGTTCAGATTCACAGTTCTCACACTGTGTGCACCCATGGCTGCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp GTTTGCAGCCATGGGTGCACACAGTGTGAGAACTGTGAATCTGAACTCCAGTTCGGGTGTGGGTGTCTCTaGCTGGCTGGAGTAACCACT +
Preference number: 4 (lower is better)
Translates to: VCSHGCTQCENCESELQFGCGCL*LAGVTT
Trigger: AGTGGTTACTCCAGCCAGTCAGAGACACCCACACCC...GAACTGGAGTTCAGATTCACAGTTCTCACACTGTGTGCACCCATGGCTGCAAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp TGTGAGAACTGTGAATCTGAACTCCAGTTCCTGAAAGTGGGAGGGGTAGGATGGCTCTGGAGATTGAGCTaGGCCTCGCGAAGCAGTTCC +
Preference number: 4 (lower is better)
Translates to: CENCESELQFLKVGGVGWLWRLS*ASRSSS
Trigger: GGAACTGCTTCGCGAGGCGCAGCTCAATCTCCAGAG...CCATCCTACCCCTCCCACTTTCAGGAACTGGAGTTCAGATTCACAGTTCTCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp GTTTGCAGCCATGGGTGCACACAGTGTGAGAACTGTGAATCTGAACTCCAGTTCTCACACCCTGGGTCGTaGTCTCATCCTCGCTCAGCT +
Preference number: 4 (lower is better)
Translates to: VCSHGCTQCENCESELQFSHPGS*SHPRSA
Trigger: AGCTGAGCGAGGATGAGACCACGACCCAGGGTGTGA...GAACTGGAGTTCAGATTCACAGTTCTCACACTGTGTGCACCCATGGCTGCAAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp TGGGGTCATGAAGCTAACAGGAATGGATTGGCTGCCCATGGCCTTGACTCCTTTGTGTCTCTGACTGGCTaGAGTAACCACTGGAAGGGG +
Preference number: 4 (lower is better)
Translates to: WGHEANRNGLAAHGLDSFVSLTG*SNHWKG
Trigger: CCCCTTCCAGTGGTTACTCCAGCCAGTCAGAGACAC...AAAGGAGTCAAGGCCATGGGCAGCCAATCCATTCCTGTTAGCTTCATGACCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp TCTGGCAACAAATGGAGAAACAGCAAAGAAACATTTGGTGCAGAACCTGCCCCCCTGAGGGGCGGGTCCTaGGAGTTGCCTTACTTCCCT +
Preference number: 4 (lower is better)
Translates to: SGNKWRNSKETFGAEPAPLRGGS*ELPYFP
Trigger: AGGGAAGTAAGGCAACTCCCAGGACCCGCCCCTCAG...GGGGGCAGGTTCTGCACCAAATGTTTCTTTGCTGTTTCTCCATTTGTTGCCAGA
53% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CAA 72 bp GACAAGACATTCATCCCAGAGACCAGGGACCTAGAATaGATGCTGGGCCCTGCCTCAGACTCATTGTGTGAC +
Preference number: 4 (lower is better)
Translates to: DKTFIPETRDLE*MLGPASDSLCD
Trigger: GTCACACAATGAGTCTGAGGCAGGGCCCAGCATCAATTCTAGGTCCCTGGTCTCTGGGATGAATGTCTTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp GTTTGCAGCCATGGGTGCACACAGTGTGAGAACTGTGAATCTGAACTCCAGTTCAACAACTTGTGGAGCTaGGTGGCCAGGCCTGATGTC +
Preference number: 4 (lower is better)
Translates to: VCSHGCTQCENCESELQFNNLWS*VARPDV
Trigger: GACATCAGGCCTGGCCACTCAGCTCCACAAGTTGTT...GAACTGGAGTTCAGATTCACAGTTCTCACACTGTGTGCACCCATGGCTGCAAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp GTTTGCAGCCATGGGTGCACACAGTGTGAGAACTGTGAATCTGAACTCCAGTTCGGGCTGGCTCATCTTTaGCGAGTGAGACACTTCGCA +
Preference number: 4 (lower is better)
Translates to: VCSHGCTQCENCESELQFGLAHL*RVRHFA
Trigger: TGCGAAGTGTCTCACTCGTCAAAGATGAGCCAGCCC...GAACTGGAGTTCAGATTCACAGTTCTCACACTGTGTGCACCCATGGCTGCAAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp TTCCCAGGCCTAAGTCTTTTCTCTGACTGTGAAGTCTCTGCCCCAAATCCTTTTCTTGAGTGCACTCAATaGCCGTGGTGCCGGTGGCAG +
Preference number: 4 (lower is better)
Translates to: FPGLSLFSDCEVSAPNPFLECTQ*PWCRWQ
Trigger: CTGCCACCGGCACCACGGTCATTGAGTGCACTCAAG...AAAAGGATTTGGGGCAGAGACTTCACAGTCAGAGAAAAGACTTAGGCCTGGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp GTTGGCCAAATAGCAGTACCTAGATGGCAAAAAGTAGCCCTTGTATCCTGGGCCGGAGGCCAGAGACTCTaGGCTTCCCTGAACTTGAGT +
Preference number: 4 (lower is better)
Translates to: VGQIAVPRWQKVALVSWAGGQRL*ASLNLS
Trigger: ACTCAAGTTCAGGGAAGCTCAGAGTCTCTGGCCTCC...GGCCCAGGATACAAGGGCTACTTTTTGCCATCTAGGTACTGCTATTTGGCCAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp TCTGGCAACAAATGGAGAAACAGCAAAGAAACATTTGGTGCAGAACCTGCCCCCGACACTGTACACCACTaGCATGCTCTCCATGCCGGG +
Preference number: 4 (lower is better)
Translates to: SGNKWRNSKETFGAEPAPDTVHH*HALHAG
Trigger: CCCGGCATGGAGAGCATGGCAGTGGTGTACAGTGTC...GGGGGCAGGTTCTGCACCAAATGTTTCTTTGCTGTTTCTCCATTTGTTGCCAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp CCAAAGACTGGGTTTGTGATCTCTCCTACTTACTGCTACTGGAACGGGAATCCATTGCCTTCTGTGCCGTaGCTCCTGCTCAGTGCTGAG +
Preference number: 4 (lower is better)
Translates to: PKTGFVISPTYCYWNGNPLPSVP*LLLSAE
Trigger: CTCAGCACTGAGCAGGAGGCACGGCACAGAAGGCAA...TGGATTCCCGTTCCAGTAGCAGTAAGTAGGAGAGATCACAAACCCAGTCTTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp TGTGAGAACTGTGAATCTGAACTCCAGTTCCTGAAAGTGGGAGGGGTAGGATGGCATGACGACCTCGAGTaGGCAGTCGCTGTCGCATTT +
Preference number: 4 (lower is better)
Translates to: CENCESELQFLKVGGVGWHDDLE*AVAVAF
Trigger: AAATGCGACAGCGACTGCCCACTCGAGGTCGTCATG...CCATCCTACCCCTCCCACTTTCAGGAACTGGAGTTCAGATTCACAGTTCTCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp GGTTCTGGTGTTCATTTGATTCCCTGTAGGGAGAAGGTCAATACTATCAAATGCGCCTCCGCCTCAGGGTaGACTTGGGGTTCACGGCTG +
Preference number: 4 (lower is better)
Translates to: GSGVHLIPCREKVNTIKCASASG*TWGSRL
Trigger: CAGCCGTGAACCCCAAGTCCACCCTGAGGCGGAGGC...GCATTTGATAGTATTGACCTTCTCCCTACAGGGAATCAAATGAACACCAGAACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp GTTTGCAGCCATGGGTGCACACAGTGTGAGAACTGTGAATCTGAACTCCAGTTCAGGCTCCTAGGCCTCTaGTCCTTGGGCAGTACCAAT +
Preference number: 4 (lower is better)
Translates to: VCSHGCTQCENCESELQFRLLGL*SLGSTN
Trigger: ATTGGTACTGCCCAAGGACCAGAGGCCTAGGAGCCT...GAACTGGAGTTCAGATTCACAGTTCTCACACTGTGTGCACCCATGGCTGCAAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp TGTGAGAACTGTGAATCTGAACTCCAGTTCCTGAAAGTGGGAGGGGTAGGATGGTGGCAGTGCTGGAGCTaGACAAGGACTGGTAGGTGT +
Preference number: 4 (lower is better)
Translates to: CENCESELQFLKVGGVGWWQCWS*TRTGRC
Trigger: ACACCTACCAGTCCTTGTCCAGCTCCAGCACTGCCA...CCATCCTACCCCTCCCACTTTCAGGAACTGGAGTTCAGATTCACAGTTCTCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp GTTGGCCAAATAGCAGTACCTAGATGGCAAAAAGTAGCCCTTGTATCCTGGGCCTGGCTTCCACCTCAATaGAGAGCTGGGAGGGTGTTG +
Preference number: 4 (lower is better)
Translates to: VGQIAVPRWQKVALVSWAWLPPQ*RAGRVL
Trigger: CAACACCCTCCCAGCTCTCCATTGAGGTGGAAGCCA...GGCCCAGGATACAAGGGCTACTTTTTGCCATCTAGGTACTGCTATTTGGCCAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp TGTGAGAACTGTGAATCTGAACTCCAGTTCCTGAAAGTGGGAGGGGTAGGATGGGGCTGGAGTAACCACTaGAAGGGGACATCAGTCCAG +
Preference number: 4 (lower is better)
Translates to: CENCESELQFLKVGGVGWGWSNH*KGTSVQ
Trigger: CTGGACTGATGTCCCCTTCCAGTGGTTACTCCAGCC...CCATCCTACCCCTCCCACTTTCAGGAACTGGAGTTCAGATTCACAGTTCTCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp CCAAAGACTGGGTTTGTGATCTCTCCTACTTACTGCTACTGGAACGGGAATCCACCAGGGTCAAGGACATaGAGACAGTGGGTGTGGGTG +
Preference number: 4 (lower is better)
Translates to: PKTGFVISPTYCYWNGNPPGSRT*RQWVWV
Trigger: CACCCACACCCACTGTCTCCATGTCCTTGACCCTGG...TGGATTCCCGTTCCAGTAGCAGTAAGTAGGAGAGATCACAAACCCAGTCTTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp CTAGAGACAAGAAGTAGGACTCCGATGTTCAGTCATGGCAAGGATGGAATAATGGCAGGGCTCTCACCTTaGGGCCCCCGTCTTCTACAC +
Preference number: 4 (lower is better)
Translates to: LETRSRTPMFSHGKDGIMAGLSP*GPRLLH
Trigger: GTGTAGAAGACGGGGGCCCCAAGGTGAGAGCCCTGC...CATTATTCCATCCTTGCCATGACTGAACATCGGAGTCCTACTTCTTGTCTCTAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp TCAACTTTCCCCCATCCTCACCGGCAGCATACATTGTACCCAGGGAAGAGAGTTACAGCAACTCTTCCCTaGACAACTTGTGGAGCTGAG +
Preference number: 4 (lower is better)
Translates to: STFPHPHRQHTLYPGKRVTATLP*TTCGAE
Trigger: CTCAGCTCCACAAGTTGTTCAGGGAAGAGTTGCTGT...AACTCTCTTCCCTGGGTACAATGTATGCTGCCGGTGAGGATGGGGGAAAGTTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp CCTGCAAACACTGAATGGACATTCCCAGGCCTAAGTCTTTTCTCTGACTGTGAAGGAACTGGCAAGAGGTaGGAGGACAAGGCTGGAGGA +
Preference number: 4 (lower is better)
Translates to: PANTEWTFPGLSLFSDCEGTGKR*EDKAGG
Trigger: TCCTCCAGCCTTGTCCTCTCACCTCTTGCCAGTTCC...TTCACAGTCAGAGAAAAGACTTAGGCCTGGGAATGTCCATTCAGTGTTTGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp TCAACTTTCCCCCATCCTCACCGGCAGCATACATTGTACCCAGGGAAGAGAGTTAGGTTGCTGTGTTCCTaGGAAGAAAGCACCAGAGGA +
Preference number: 4 (lower is better)
Translates to: STFPHPHRQHTLYPGKRVRLLCS*EESTRG
Trigger: TCCTCTGGTGCTTTCTTCTCAGGAACACAGCAACCT...AACTCTCTTCCCTGGGTACAATGTATGCTGCCGGTGAGGATGGGGGAAAGTTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp TGTGAGAACTGTGAATCTGAACTCCAGTTCCTGAAAGTGGGAGGGGTAGGATGGTCATCCTCGCTCAGCTaGCGTTTTGCAGGCATCAGT +
Preference number: 4 (lower is better)
Translates to: CENCESELQFLKVGGVGWSSSLS*RFAGIS
Trigger: ACTGATGCCTGCAAAACGGCAGCTGAGCGAGGATGA...CCATCCTACCCCTCCCACTTTCAGGAACTGGAGTTCAGATTCACAGTTCTCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp GTTGGCCAAATAGCAGTACCTAGATGGCAAAAAGTAGCCCTTGTATCCTGGGCCCTGGCCTGGGGAGGTTaGTGTGTTCCTGAGAAGAAA +
Preference number: 4 (lower is better)
Translates to: VGQIAVPRWQKVALVSWALAWGG*CVPEKK
Trigger: TTTCTTCTCAGGAACACAGCAACCTCCCCAGGCCAG...GGCCCAGGATACAAGGGCTACTTTTTGCCATCTAGGTACTGCTATTTGGCCAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp AAAATCAAATCTGCTGGAGCCCTCCTGGGGAACAGTCACCAAGGTGAGGACATTGCCTCTCCTTTAGGATaGGTAGAGGGAAGGGGTCAT +
Preference number: 4 (lower is better)
Translates to: KIKSAGALLGNSHQGEDIASPLG*VEGRGH
Trigger: ATGACCCCTTCCCTCTACCCATCCTAAAGGAGAGGC...AATGTCCTCACCTTGGTGACTGTTCCCCAGGAGGGCTCCAGCAGATTTGATTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp AAAATCAAATCTGCTGGAGCCCTCCTGGGGAACAGTCACCAAGGTGAGGACATTCCCAGTGCATCCTGCTaGGTTATCACGGGTGACAAA +
Preference number: 4 (lower is better)
Translates to: KIKSAGALLGNSHQGEDIPSASC*VITGDK
Trigger: TTTGTCACCCGTGATAACCCAGCAGGATGCACTGGG...AATGTCCTCACCTTGGTGACTGTTCCCCAGGAGGGCTCCAGCAGATTTGATTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp AAGCAGAGGACCAATGAGAGCACTGTATGTTATGCACACACTCGGGTCCAATTCTACCAATTCGCCTTCTaGTGGGAGGGCTGGCTCATC +
Preference number: 4 (lower is better)
Translates to: KQRTNESTVCYAHTRVQFYQFAF*WEGWLI
Trigger: GATGAGCCAGCCCTCCCACCAGAAGGCGAATTGGTA...GAATTGGACCCGAGTGTGTGCATAACATACAGTGCTCTCATTGGTCCTCTGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp CCTGCAAACACTGAATGGACATTCCCAGGCCTAAGTCTTTTCTCTGACTGTGAAAGCATCTGGGTGAGGTaGGTGGTGCCCTTGGTGTTC +
Preference number: 4 (lower is better)
Translates to: PANTEWTFPGLSLFSDCESIWVR*VVPLVF
Trigger: GAACACCAAGGGCACCACCCACCTCACCCAGATGCT...TTCACAGTCAGAGAAAAGACTTAGGCCTGGGAATGTCCATTCAGTGTTTGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp GTTTGCAGCCATGGGTGCACACAGTGTGAGAACTGTGAATCTGAACTCCAGTTCGAGAGGCTACTTCCCTaGCTTCCACCTCAATGGAGA +
Preference number: 4 (lower is better)
Translates to: VCSHGCTQCENCESELQFERLLP*LPPQWR
Trigger: TCTCCATTGAGGTGGAAGCCAGGGAAGTAGCCTCTC...GAACTGGAGTTCAGATTCACAGTTCTCACACTGTGTGCACCCATGGCTGCAAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp AACCTTGGGGTCATGAAGCTAACAGGAATGGATTGGCTGCCCATGGCCTTGACTAAGCACCAGAGGAACTaGCAAGAGGTGAGAGGACAA +
Preference number: 4 (lower is better)
Translates to: NLGVMKLTGMDWLPMALTKHQRN*QEVRGQ
Trigger: TTGTCCTCTCACCTCTTGCCAGTTCCTCTGGTGCTT...AGTCAAGGCCATGGGCAGCCAATCCATTCCTGTTAGCTTCATGACCCCAAGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp TGTGAGAACTGTGAATCTGAACTCCAGTTCCTGAAAGTGGGAGGGGTAGGATGGTCTTCTACACTGGCCTaGGGAGGTTGCTGTGTTCCT +
Preference number: 4 (lower is better)
Translates to: CENCESELQFLKVGGVGWSSTLA*GGCCVP
Trigger: AGGAACACAGCAACCTCCCCAGGCCAGTGTAGAAGA...CCATCCTACCCCTCCCACTTTCAGGAACTGGAGTTCAGATTCACAGTTCTCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp GCATGCCACAGTCTGAAGATTTCACAAAAAGATGAGGAAGGTAAGGTTCTAGTAGCAGGCACTGCTACTTaGCCCTGGGGCAGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: ACHSLKISQKDEEGKVLVAGTAT*PWGSSS
Trigger: GCTGCTGCTGCCCCAGGGCCAAGTAGCAGTGCCTGC...TACTAGAACCTTACCTTCCTCATCTTTTTGTGAAATCTTCAGACTGTGGCATGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CAA 72 bp CAAAGCACGATACAAGTTCATTTCCTTTTGGCCCCCTaGGGACCAGAAGACCGAGAGCTTTCCAACACAGGC +
Preference number: 4 (lower is better)
Translates to: QSTIQVHFLLAP*GPEDRELSNTG
Trigger: GCCTGTGTTGGAAAGCTCTCGGTCTTCTGGTCCCAAGGGGGCCAAAAGGAAATGAACTTGTATCGTGCTTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CAA 72 bp GCACGTGTGCAGAGGTCAGCGGATAGTTTGCAGGAGTaGACTCTCTTCTTCTACCTGTGGGTTCTACTCACT +
Preference number: 4 (lower is better)
Translates to: ARVQRSADSLQE*TLFFYLWVLLT
Trigger: AGTGAGTAGAACCCACAGGTAGAAGAAGAGAGTCAACTCCTGCAAACTATCCGCTGACCTCTGCACACGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CAA 72 bp TGTGTGTCTGCACGTGTGCAGAGGTCAGCGGATAGTTaGCAGGAGTTGACTCTCTTCTTCTACCTGTGGGTT +
Preference number: 4 (lower is better)
Translates to: CVSARVQRSADS*QELTLFFYLWV
Trigger: AACCCACAGGTAGAAGAAGAGAGTCAACTCCTGCAAACTATCCGCTGACCTCTGCACACGTGCAGACACACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp CAGACAAGTAGAAGCCAGTCATGGGTCCTTCATAAATATAGTGCTTTAAATGACGCTGGAGGATGCTGTTaGCTCCCCGGGGAAGCTGGG +
Preference number: 4 (lower is better)
Translates to: QTSRSQSWVLHKYSALNDAGGCC*LPGEAG
Trigger: CCCAGCTTCCCCGGGGAGTCAACAGCATCCTCCAGC...GTCATTTAAAGCACTATATTTATGAAGGACCCATGACTGGCTTCTACTTGTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp CCAAAGACTGGGTTTGTGATCTCTCCTACTTACTGCTACTGGAACGGGAATCCACACCCCTTTACCAGGTaGCTTCTGGTCATCACCAGT +
Preference number: 4 (lower is better)
Translates to: PKTGFVISPTYCYWNGNPHPFTR*LLVITS
Trigger: ACTGGTGATGACCAGAAGTCACCTGGTAAAGGGGTG...TGGATTCCCGTTCCAGTAGCAGTAAGTAGGAGAGATCACAAACCCAGTCTTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp TCATTCTCACACCAAGGCGGAGTCAAAGCACAAAACAGAGACAAAATGGCAGGATGTACACCACTGCCATaGTCTCCATGCCGGGATGGT +
Preference number: 4 (lower is better)
Translates to: SFSHQGGVKAQNRDKMAGCTPLP*SPCRDG
Trigger: ACCATCCCGGCATGGAGAGCATGGCAGTGGTGTACA...TCCTGCCATTTTGTCTCTGTTTTGTGCTTTGACTCCGCCTTGGTGTGAGAATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp CCTGCAAACACTGAATGGACATTCCCAGGCCTAAGTCTTTTCTCTGACTGTGAAGATGGCGGCTCACCTTaGTTTTGCTGCGGATGGAGA +
Preference number: 4 (lower is better)
Translates to: PANTEWTFPGLSLFSDCEDGGSP*FCCGWR
Trigger: TCTCCATCCGCAGCAAAACCAAGGTGAGCCGCCATC...TTCACAGTCAGAGAAAAGACTTAGGCCTGGGAATGTCCATTCAGTGTTTGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CAA 72 bp TCTCTGGAGGAAAGTCACACTGTGGTTGAGGAGGCCTaGGTGTCTTTCTGTGTCTTCACAAAGGGCCATCAA +
Preference number: 4 (lower is better)
Translates to: SLEESHTVVEEA*VSFCVFTKGHQ
Trigger: TTGATGGCCCTTTGTGAAGACACAGAAAGACACCAAGGCCTCCTCAACCACAGTGTGACTTTCCTCCAGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CAA 72 bp CATAGCAAAGGAAAAGCTCACCATTGTGCCACAGACTaGGCTAACATAGAGGGCGGAGCAGTGAGCAACAGA +
Preference number: 4 (lower is better)
Translates to: HSKGKAHHCATD*ANIEGGAVSNR
Trigger: TCTGTTGCTCACTGCTCCGCCCTCTATGTTAGCCAAGTCTGTGGCACAATGGTGAGCTTTTCCTTTGCTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CAA 72 bp CCGCTCCTCCCCCTTCTTCTCTCTCATATGTTGCTCTaGATGGTTCCAAGATCACACTTTGAGAACCAGTGG +
Preference number: 4 (lower is better)
Translates to: PLLPLLLSHMLL*MVPRSHFENQW
Trigger: CCACTGGTTCTCAAAGTGTGATCTTGGAACCATCAAGAGCAACATATGAGAGAGAAGAAGGGGGAGGAGCGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp GTTGGCCAAATAGCAGTACCTAGATGGCAAAAAGTAGCCCTTGTATCCTGGGCCGTAAGATACCAGTGGTaGGAGAACTGCGTACTTCCT +
Preference number: 4 (lower is better)
Translates to: VGQIAVPRWQKVALVSWAVRYQW*ENCVLP
Trigger: AGGAAGTACGCAGTTCTCTCACCACTGGTATCTTAC...GGCCCAGGATACAAGGGCTACTTTTTGCCATCTAGGTACTGCTATTTGGCCAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp TTAAGAGACCATTTTCCCCTTAAGTCTGAGAGAAGTGCTAGAAGACAGTTGGTGCTGGCTCAGACTTGCTaGCTGACCTCAGGCGAACAG +
Preference number: 4 (lower is better)
Translates to: LRDHFPLKSERSARRQLVLAQTC*LTSGEQ
Trigger: CTGTTCGCCTGAGGTCAGTCAGCAAGTCTGAGCCAG...CACCAACTGTCTTCTAGCACTTCTCTCAGACTTAAGGGGAAAATGGTCTCTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp TCATTCTCACACCAAGGCGGAGTCAAAGCACAAAACAGAGACAAAATGGCAGGATTCTCTCTGGCATGGTaGAGACTTCCTCTGCTCCAG +
Preference number: 4 (lower is better)
Translates to: SFSHQGGVKAQNRDKMAGFSLAW*RLPLLQ
Trigger: CTGGAGCAGAGGAAGTCTTCACCATGCCAGAGAGAA...TCCTGCCATTTTGTCTCTGTTTTGTGCTTTGACTCCGCCTTGGTGTGAGAATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp AACCTTGGGGTCATGAAGCTAACAGGAATGGATTGGCTGCCCATGGCCTTGACTTGTCTATCAAACTGCTaGCCAGAGATGTTGATTGGC +
Preference number: 4 (lower is better)
Translates to: NLGVMKLTGMDWLPMALTCLSNC*PEMLIG
Trigger: GCCAATCAACATCTCTGGGCAGCAGTTTGATAGACA...AGTCAAGGCCATGGGCAGCCAATCCATTCCTGTTAGCTTCATGACCCCAAGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp GTTTGCAGCCATGGGTGCACACAGTGTGAGAACTGTGAATCTGAACTCCAGTTCACTCTGTTGGTCCATTaGAAGAACTGGGGACACTGT +
Preference number: 4 (lower is better)
Translates to: VCSHGCTQCENCESELQFTLLVH*KNWGHC
Trigger: ACAGTGTCCCCAGTTCTTGCAATGGACCAACAGAGT...GAACTGGAGTTCAGATTCACAGTTCTCACACTGTGTGCACCCATGGCTGCAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp CTAGAGACAAGAAGTAGGACTCCGATGTTCAGTCATGGCAAGGATGGAATAATGCTTGATTGCCCTGGCTaGTGGCACTTGGGGTCATGT +
Preference number: 4 (lower is better)
Translates to: LETRSRTPMFSHGKDGIMLDCPG*WHLGSC
Trigger: ACATGACCCCAAGTGCCAGCAGCCAGGGCAATCAAG...CATTATTCCATCCTTGCCATGACTGAACATCGGAGTCCTACTTCTTGTCTCTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp CCAAAGACTGGGTTTGTGATCTCTCCTACTTACTGCTACTGGAACGGGAATCCACTGTCTTGGGGAAGCTaGTTCATGTGTGGAATGGAG +
Preference number: 4 (lower is better)
Translates to: PKTGFVISPTYCYWNGNPLSWGS*FMCGME
Trigger: CTCCATTCCACACATGAAGCAGCTTCCCCAAGACAG...TGGATTCCCGTTCCAGTAGCAGTAAGTAGGAGAGATCACAAACCCAGTCTTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp TTCCCAGGCCTAAGTCTTTTCTCTGACTGTGAAGTCTCTGCCCCAAATCCTTTTCTGGCTGCTGGCACTTaGGGTCATGTATGTGAAAGC +
Preference number: 4 (lower is better)
Translates to: FPGLSLFSDCEVSAPNPFLAAGT*GHVCES
Trigger: GCTTTCACATACATGACCCCAAGTGCCAGCAGCCAG...AAAAGGATTTGGGGCAGAGACTTCACAGTCAGAGAAAAGACTTAGGCCTGGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp TCATTCTCACACCAAGGCGGAGTCAAAGCACAAAACAGAGACAAAATGGCAGGATCTGTCTTCGTAGAGTaGGGTGCTCAGAGTAGCTGG +
Preference number: 4 (lower is better)
Translates to: SFSHQGGVKAQNRDKMAGSVFVE*GAQSSW
Trigger: CCAGCTACTCTGAGCACCCCACTCTACGAAGACAGA...TCCTGCCATTTTGTCTCTGTTTTGTGCTTTGACTCCGCCTTGGTGTGAGAATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp CCAAAGACTGGGTTTGTGATCTCTCCTACTTACTGCTACTGGAACGGGAATCCAGGATGCGGGTCTCACTaGTCTTCTGTTCTTCGTCAT +
Preference number: 4 (lower is better)
Translates to: PKTGFVISPTYCYWNGNPGCGSH*SSVLRH
Trigger: ATGACGAAGAACAGAAGACCAGTGAGACCCGCATCC...TGGATTCCCGTTCCAGTAGCAGTAAGTAGGAGAGATCACAAACCCAGTCTTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp GGTTCTGGTGTTCATTTGATTCCCTGTAGGGAGAAGGTCAATACTATCAAATGCTGGAGACAGTGGGTGTaGGTGTCTCTGACTGGCTGG +
Preference number: 4 (lower is better)
Translates to: GSGVHLIPCREKVNTIKCWRQWV*VSLTGW
Trigger: CCAGCCAGTCAGAGACACCCACACCCACTGTCTCCA...GCATTTGATAGTATTGACCTTCTCCCTACAGGGAATCAAATGAACACCAGAACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp TTCCCAGGCCTAAGTCTTTTCTCTGACTGTGAAGTCTCTGCCCCAAATCCTTTTCCGACAGATCCAGGGTaGTTGAAGAGGTCAGTGGTA +
Preference number: 4 (lower is better)
Translates to: FPGLSLFSDCEVSAPNPFPTDPG*LKRSVV
Trigger: TACCACTGACCTCTTCAACCACCCTGGATCTGTCGG...AAAAGGATTTGGGGCAGAGACTTCACAGTCAGAGAAAAGACTTAGGCCTGGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp CCAAAGACTGGGTTTGTGATCTCTCCTACTTACTGCTACTGGAACGGGAATCCAAAGCTGCTTCATGTGTaGAATGGAGCTCCTGGATGC +
Preference number: 4 (lower is better)
Translates to: PKTGFVISPTYCYWNGNPKLLHV*NGAPGC
Trigger: GCATCCAGGAGCTCCATTCCACACATGAAGCAGCTT...TGGATTCCCGTTCCAGTAGCAGTAAGTAGGAGAGATCACAAACCCAGTCTTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp CTAGAGACAAGAAGTAGGACTCCGATGTTCAGTCATGGCAAGGATGGAATAATGGCTTCTTCCTGGCTCTaGAGGCCGATTCTTTCAGGC +
Preference number: 4 (lower is better)
Translates to: LETRSRTPMFSHGKDGIMASSWL*RPILSG
Trigger: GCCTGAAAGAATCGGCCTCCAGAGCCAGGAAGAAGC...CATTATTCCATCCTTGCCATGACTGAACATCGGAGTCCTACTTCTTGTCTCTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CAA 72 bp GGCCAGTGCCTGATGACTTTGGAAAAGAAGGGGTCATaGTGGTTGTTCTGGAAGTCTTTCCACATCTGCTGT +
Preference number: 4 (lower is better)
Translates to: GQCLMTLEKKGS*WLFWKSFHICC
Trigger: ACAGCAGATGTGGAAAGACTTCCAGAACAACCACAATGACCCCTTCTTTTCCAAAGTCATCAGGCACTGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CAA 72 bp ATTGAAGCTGGAGGGAAACAGGGGAATACAAATAGCTaGAAGCAGAGGCTGACTACCTGGGGCCAATTTGAG +
Preference number: 4 (lower is better)
Translates to: IEAGGKQGNTNS*KQRLTTWGQFE
Trigger: CTCAAATTGGCCCCAGGTAGTCAGCCTCTGCTTCAAGCTATTTGTATTCCCCTGTTTCCCTCCAGCTTCAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp AAGCAGAGGACCAATGAGAGCACTGTATGTTATGCACACACTCGGGTCCAATTCGGAAGTGGAGAATGTTaGCTCTGTTGGTCCATTGCA +
Preference number: 4 (lower is better)
Translates to: KQRTNESTVCYAHTRVQFGSGEC*LCWSIA
Trigger: TGCAATGGACCAACAGAGTCAACATTCTCCACTTCC...GAATTGGACCCGAGTGTGTGCATAACATACAGTGCTCTCATTGGTCCTCTGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp TTCCCAGGCCTAAGTCTTTTCTCTGACTGTGAAGTCTCTGCCCCAAATCCTTTTTTGGGGTCATGTATGTaGAAGCATCTCCCTTCCAGG +
Preference number: 4 (lower is better)
Translates to: FPGLSLFSDCEVSAPNPFLGSCM*KHLPSR
Trigger: CCTGGAAGGGAGATGCTTTCACATACATGACCCCAA...AAAAGGATTTGGGGCAGAGACTTCACAGTCAGAGAAAAGACTTAGGCCTGGGAA
48% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp CCTGCAAACACTGAATGGACATTCCCAGGCCTAAGTCTTTTCTCTGACTGTGAAGGCTCACCTTGGTTTTaGTGCGGATGGAGATACTCA +
Preference number: 4 (lower is better)
Translates to: PANTEWTFPGLSLFSDCEGSPWF*CGWRYS
Trigger: TGAGTATCTCCATCCGCAGCAAAACCAAGGTGAGCC...TTCACAGTCAGAGAAAAGACTTAGGCCTGGGAATGTCCATTCAGTGTTTGCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp TTAAGAGACCATTTTCCCCTTAAGTCTGAGAGAAGTGCTAGAAGACAGTTGGTGACCTCAATGGAGAGCTaGGAGGGTGTTGTCGCTCTG +
Preference number: 4 (lower is better)
Translates to: LRDHFPLKSERSARRQLVTSMES*EGVVAL
Trigger: CAGAGCGACAACACCCTCCCAGCTCTCCATTGAGGT...CACCAACTGTCTTCTAGCACTTCTCTCAGACTTAAGGGGAAAATGGTCTCTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp GCATGCCACAGTCTGAAGATTTCACAAAAAGATGAGGAAGGTAAGGTTCTAGTAAGGCCTTCGGGCCAATaGAGGTTTCTCGGCTATGGG +
Preference number: 4 (lower is better)
Translates to: ACHSLKISQKDEEGKVLVRPSGQ*RFLGYG
Trigger: CCCATAGCCGAGAAACCTCCATTGGCCCGAAGGCCT...TACTAGAACCTTACCTTCCTCATCTTTTTGTGAAATCTTCAGACTGTGGCATGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp TGTGAGAACTGTGAATCTGAACTCCAGTTCCTGAAAGTGGGAGGGGTAGGATGGCCGGAGGTGGAATCTTaGTCATCTTTTTCTCAGCTT +
Preference number: 4 (lower is better)
Translates to: CENCESELQFLKVGGVGWPEVES*SSFSQL
Trigger: AAGCTGAGAAAAAGATGACCAAGATTCCACCTCCGG...CCATCCTACCCCTCCCACTTTCAGGAACTGGAGTTCAGATTCACAGTTCTCACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp TCATTCTCACACCAAGGCGGAGTCAAAGCACAAAACAGAGACAAAATGGCAGGATTCTTCACTGGTGAATaGGAGCTGGGTTTGCTTCCC +
Preference number: 4 (lower is better)
Translates to: SFSHQGGVKAQNRDKMAGFFTGE*ELGLLP
Trigger: GGGAAGCAAACCCAGCTCCCATTCACCAGTGAAGAA...TCCTGCCATTTTGTCTCTGTTTTGTGCTTTGACTCCGCCTTGGTGTGAGAATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp GGTTCTGGTGTTCATTTGATTCCCTGTAGGGAGAAGGTCAATACTATCAAATGCGCTGCCCAGAGATGTTaGTTGGCACAAGGTCAGACT +
Preference number: 4 (lower is better)
Translates to: GSGVHLIPCREKVNTIKCAAQRC*LAQGQT
Trigger: AGTCTGACCTTGTGCCAATCAACATCTCTGGGCAGC...GCATTTGATAGTATTGACCTTCTCCCTACAGGGAATCAAATGAACACCAGAACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp GCATGCCACAGTCTGAAGATTTCACAAAAAGATGAGGAAGGTAAGGTTCTAGTACTCAGACTTGCTGACTaGCCTCAGGCGAACAGAACG +
Preference number: 4 (lower is better)
Translates to: ACHSLKISQKDEEGKVLVLRLAD*PQANRT
Trigger: CGTTCTGTTCGCCTGAGGTCAGTCAGCAAGTCTGAG...TACTAGAACCTTACCTTCCTCATCTTTTTGTGAAATCTTCAGACTGTGGCATGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp AACCTTGGGGTCATGAAGCTAACAGGAATGGATTGGCTGCCCATGGCCTTGACTATGATAACCGTGACTTaGAGATTTTCTCCATTGGTG +
Preference number: 4 (lower is better)
Translates to: NLGVMKLTGMDWLPMALTMITVT*RFSPLV
Trigger: CACCAATGGAGAAAATCTGCAAGTCACGGTTATCAT...AGTCAAGGCCATGGGCAGCCAATCCATTCCTGTTAGCTTCATGACCCCAAGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp TCAGTAAGAAACGGATTCGACAGAGTCACCTTGCACAAACAGGACACACTTCACGGTGAAGACTTCCTCTaGTCCAGGTTCCTCTATGTA +
Preference number: 4 (lower is better)
Translates to: SVRNGFDRVTLHKQDTLHGEDFL*SRFLYV
Trigger: TACATAGAGGAACCTGGAGCAGAGGAAGTCTTCACC...GTGAAGTGTGTCCTGTTTGTGCAAGGTGACTCTGTCGAATCCGTTTCTTACTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp GCATGCCACAGTCTGAAGATTTCACAAAAAGATGAGGAAGGTAAGGTTCTAGTATCTTGCAACAGGCTCTaGAGATTGAGCTGCGCCTCG +
Preference number: 4 (lower is better)
Translates to: ACHSLKISQKDEEGKVLVSCNRL*RLSCAS
Trigger: CGAGGCGCAGCTCAATCTCCAGAGCCTGTTGCAAGA...TACTAGAACCTTACCTTCCTCATCTTTTTGTGAAATCTTCAGACTGTGGCATGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp AAGCAGAGGACCAATGAGAGCACTGTATGTTATGCACACACTCGGGTCCAATTCCAAGAAGGCCAATCTTaGGAGGTCTTTCTGGTATCT +
Preference number: 4 (lower is better)
Translates to: KQRTNESTVCYAHTRVQFQEGQS*EVFLVS
Trigger: AGATACCAGAAAGACCTCCCAAGATTGGCCTTCTTG...GAATTGGACCCGAGTGTGTGCATAACATACAGTGCTCTCATTGGTCCTCTGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp GCATGCCACAGTCTGAAGATTTCACAAAAAGATGAGGAAGGTAAGGTTCTAGTACTCATCTTTGACGAGTaGGACACTTCGCATGGGTGG +
Preference number: 4 (lower is better)
Translates to: ACHSLKISQKDEEGKVLVLIFDE*DTSHGW
Trigger: CCACCCATGCGAAGTGTCTCACTCGTCAAAGATGAG...TACTAGAACCTTACCTTCCTCATCTTTTTGTGAAATCTTCAGACTGTGGCATGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp GCATGCCACAGTCTGAAGATTTCACAAAAAGATGAGGAAGGTAAGGTTCTAGTAATGCAGGCATCCATTTaGGCTACAGGGGAGGTGAGA +
Preference number: 4 (lower is better)
Translates to: ACHSLKISQKDEEGKVLVMQASI*ATGEVR
Trigger: TCTCACCTCCCCTGTAGCTCAAATGGATGCCTGCAT...TACTAGAACCTTACCTTCCTCATCTTTTTGTGAAATCTTCAGACTGTGGCATGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp TCTGGCAACAAATGGAGAAACAGCAAAGAAACATTTGGTGCAGAACCTGCCCCCTCCTCATATTCTTCTTaGAACAGGCTCTGGAGATTG +
Preference number: 4 (lower is better)
Translates to: SGNKWRNSKETFGAEPAPSSYSS*NRLWRL
Trigger: CAATCTCCAGAGCCTGTTGCAAGAAGAATATGAGGA...GGGGGCAGGTTCTGCACCAAATGTTTCTTTGCTGTTTCTCCATTTGTTGCCAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp GCATGCCACAGTCTGAAGATTTCACAAAAAGATGAGGAAGGTAAGGTTCTAGTACAATTCGCCTTCTGGTaGGAGGGCTGGCTCATCTTT +
Preference number: 4 (lower is better)
Translates to: ACHSLKISQKDEEGKVLVQFAFW*EGWLIF
Trigger: AAAGATGAGCCAGCCCTCCCACCAGAAGGCGAATTG...TACTAGAACCTTACCTTCCTCATCTTTTTGTGAAATCTTCAGACTGTGGCATGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp ATTCCCTGTAGGGAGAAGGTCAATACTATCAAATGCCACACTTTTTACATTAAGGGTGGGTGGTGCCCTTaGTGTTCCAAGGAGAGGCAA +
Preference number: 4 (lower is better)
Translates to: IPCREKVNTIKCHTFYIKGGWCP*CSKERQ
Trigger: TTGCCTCTCCTTGGAACACCAAGGGCACCACCCACC...CTTAATGTAAAAAGTGTGGCATTTGATAGTATTGACCTTCTCCCTACAGGGAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp GTTTGCAGCCATGGGTGCACACAGTGTGAGAACTGTGAATCTGAACTCCAGTTCTTCCTCTATGTAATCTaGACTCTCAATGTCGTCTTC +
Preference number: 4 (lower is better)
Translates to: VCSHGCTQCENCESELQFFLYVI*TLNVVF
Trigger: GAAGACGACATTGAGAGTCCAGATTACATAGAGGAA...GAACTGGAGTTCAGATTCACAGTTCTCACACTGTGTGCACCCATGGCTGCAAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp TCTGGCAACAAATGGAGAAACAGCAAAGAAACATTTGGTGCAGAACCTGCCCCCTTACTTCCCTTCTTCTaGAGCAAGGCCTTGAAATCA +
Preference number: 4 (lower is better)
Translates to: SGNKWRNSKETFGAEPAPLLPFF*SKALKS
Trigger: TGATTTCAAGGCCTTGCTCCAGAAGAAGGGAAGTAA...GGGGGCAGGTTCTGCACCAAATGTTTCTTTGCTGTTTCTCCATTTGTTGCCAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CAA 72 bp TGCCTGATGACTTTGGAAAAGAAGGGGTCATTGTGGTaGTTCTGGAAGTCTTTCCACATCTGCTGTCTTCCA +
Preference number: 4 (lower is better)
Translates to: CLMTLEKKGSLW*FWKSFHICCLP
Trigger: TGGAAGACAGCAGATGTGGAAAGACTTCCAGAACAACCACAATGACCCCTTCTTTTCCAAAGTCATCAGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp CAGACAAGTAGAAGCCAGTCATGGGTCCTTCATAAATATAGTGCTTTAAATGACTGGCATAAGGCAGGATaGGGGTCTCACTGGTCTTCT +
Preference number: 4 (lower is better)
Translates to: QTSRSQSWVLHKYSALNDWHKAG*GSHWSS
Trigger: AGAAGACCAGTGAGACCCGCATCCTGCCTTATGCCA...GTCATTTAAAGCACTATATTTATGAAGGACCCATGACTGGCTTCTACTTGTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp TTAAGAGACCATTTTCCCCTTAAGTCTGAGAGAAGTGCTAGAAGACAGTTGGTGTCTGGAGCAAGGCCTTaGAATCATCATTTCTACCAG +
Preference number: 4 (lower is better)
Translates to: LRDHFPLKSERSARRQLVSGARP*NHHFYQ
Trigger: CTGGTAGAAATGATGATTTCAAGGCCTTGCTCCAGA...CACCAACTGTCTTCTAGCACTTCTCTCAGACTTAAGGGGAAAATGGTCTCTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp GCATGCCACAGTCTGAAGATTTCACAAAAAGATGAGGAAGGTAAGGTTCTAGTAATACTTTTGGATCTTTaGCTTCTGTGCCGTGCCTCC +
Preference number: 4 (lower is better)
Translates to: ACHSLKISQKDEEGKVLVILLDL*LLCRAS
Trigger: GGAGGCACGGCACAGAAGGCAAAGATCCAAAAGTAT...TACTAGAACCTTACCTTCCTCATCTTTTTGTGAAATCTTCAGACTGTGGCATGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp ATTCCCTGTAGGGAGAAGGTCAATACTATCAAATGCCACACTTTTTACATTAAGCTTAGGAACCAGAGGTaGGAGTGTGTTCAGAGGGAC +
Preference number: 4 (lower is better)
Translates to: IPCREKVNTIKCHTFYIKLRNQR*ECVQRD
Trigger: GTCCCTCTGAACACACTCCCACCTCTGGTTCCTAAG...CTTAATGTAAAAAGTGTGGCATTTGATAGTATTGACCTTCTCCCTACAGGGAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp CAGACAAGTAGAAGCCAGTCATGGGTCCTTCATAAATATAGTGCTTTAAATGACTGGTTTTGCTGCGGATaGAGATACTCATCCCCGACA +
Preference number: 4 (lower is better)
Translates to: QTSRSQSWVLHKYSALNDWFCCG*RYSSPT
Trigger: TGTCGGGGATGAGTATCTCCATCCGCAGCAAAACCA...GTCATTTAAAGCACTATATTTATGAAGGACCCATGACTGGCTTCTACTTGTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CAA 72 bp CTGACATCAGTAAGAAACGGATTCGACAGAGTCACCTaGCACAAACAGGACACACTTCACAAACTCCTTAAA +
Preference number: 4 (lower is better)
Translates to: LTSVRNGFDRVT*HKQDTLHKLLK
Trigger: TTTAAGGAGTTTGTGAAGTGTGTCCTGTTTGTGCAAGGTGACTCTGTCGAATCCGTTTCTTACTGATGTCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CAA 72 bp CAGATGGGCCTGATTCAATCTGGCAATTTCTTAACATaGAGCAAACGTGTAGCTGACCAAGATGGTACACAT +
Preference number: 4 (lower is better)
Translates to: QMGLIQSGNFLT*SKRVADQDGTH
Trigger: ATGTGTACCATCTTGGTCAGCTACACGTTTGCTCAATGTTAAGAAATTGCCAGATTGAATCAGGCCCATCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CAA 72 bp ATTGCGTTAGGACAGAGATATGTGTGTATTCTGGGTTaGAAAGTCAGCCTATGGAACCAGGAAGTTGGTGAT +
Preference number: 4 (lower is better)
Translates to: IALGQRYVCILG*KVSLWNQEVGD
Trigger: ATCACCAACTTCCTGGTTCCATAGGCTGACTTTCAAACCCAGAATACACACATATCTCTGTCCTAACGCAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp CAGACAAGTAGAAGCCAGTCATGGGTCCTTCATAAATATAGTGCTTTAAATGACTGTATTCTTCACTGGTaGATGGGAGCTGGGTTTGCT +
Preference number: 4 (lower is better)
Translates to: QTSRSQSWVLHKYSALNDCILHW*MGAGFA
Trigger: AGCAAACCCAGCTCCCATTCACCAGTGAAGAATACA...GTCATTTAAAGCACTATATTTATGAAGGACCCATGACTGGCTTCTACTTGTCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp GGTTCTGGTGTTCATTTGATTCCCTGTAGGGAGAAGGTCAATACTATCAAATGCCGAGTGTCGAAAACTTaGATGTCTATCAAACTGCTG +
Preference number: 4 (lower is better)
Translates to: GSGVHLIPCREKVNTIKCRVSKT*MSIKLL
Trigger: CAGCAGTTTGATAGACATGCAAGTTTTCGACACTCG...GCATTTGATAGTATTGACCTTCTCCCTACAGGGAATCAAATGAACACCAGAACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp ATTCCCTGTAGGGAGAAGGTCAATACTATCAAATGCCACACTTTTTACATTAAGGCCTTGGTTCTGCCATaGAGGCATCCATTTGAGCTA +
Preference number: 4 (lower is better)
Translates to: IPCREKVNTIKCHTFYIKALVLP*RHPFEL
Trigger: TAGCTCAAATGGATGCCTGCATGGCAGAACCAAGGC...CTTAATGTAAAAAGTGTGGCATTTGATAGTATTGACCTTCTCCCTACAGGGAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp ATTCCCTGTAGGGAGAAGGTCAATACTATCAAATGCCACACTTTTTACATTAAGTGGATCTTTGAGCATTaGCACAGCTGGGTGACCTTG +
Preference number: 4 (lower is better)
Translates to: IPCREKVNTIKCHTFYIKWIFEH*HSWVTL
Trigger: CAAGGTCACCCAGCTGTGCCAATGCTCAAAGATCCA...CTTAATGTAAAAAGTGTGGCATTTGATAGTATTGACCTTCTCCCTACAGGGAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp GGTTCTGGTGTTCATTTGATTCCCTGTAGGGAGAAGGTCAATACTATCAAATGCTTTCACTTTTCTCTCTaGCATGGTGAAGACTTCCTC +
Preference number: 4 (lower is better)
Translates to: GSGVHLIPCREKVNTIKCFHFSL*HGEDFL
Trigger: GAGGAAGTCTTCACCATGCCAGAGAGAAAAGTGAAA...GCATTTGATAGTATTGACCTTCTCCCTACAGGGAATCAAATGAACACCAGAACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CCA 90 bp GCATGCCACAGTCTGAAGATTTCACAAAAAGATGAGGAAGGTAAGGTTCTAGTATACTGGGGTTGTCAGTaGGTTCGTAGTCTTTTGAGA +
Preference number: 4 (lower is better)
Translates to: ACHSLKISQKDEEGKVLVYWGCQ*VRSLLR
Trigger: TCTCAAAAGACTACGAACCCACTGACAACCCCAGTA...TACTAGAACCTTACCTTCCTCATCTTTTTGTGAAATCTTCAGACTGTGGCATGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CAA 72 bp CTCACCGGCAGCATACATTGTACCCAGGGAAGAGAGTaGAATAAGAGAAGGTTAAGTATTAGAAAGATGCTT +
Preference number: 4 (lower is better)
Translates to: LTGSIHCTQGRE*NKRRLSIRKML
Trigger: AAGCATCTTTCTAATACTTAACCTTCTCTTATTCAACTCTCTTCCCTGGGTACAATGTATGCTGCCGGTGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR TCA 90 bp GGTTCTGGTGTTCATTTGATTCCCTGTAGGGAGAAGGTCAATACTATCAAATGCTTTGGCCTTCTTGAGTaGAATACTTTTGGATCTTTG +
Preference number: 4 (lower is better)
Translates to: GSGVHLIPCREKVNTIKCFGLLE*NTFGSL
Trigger: CAAAGATCCAAAAGTATTTCACTCAAGAAGGCCAAA...GCATTTGATAGTATTGACCTTCTCCCTACAGGGAATCAAATGAACACCAGAACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp CAGACAAGTAGAAGCCAGTCATGGGTCCTTCATAAATATAGTGCTTTAAATGACATAAATCTTCAGTTGTaGGGGAAGCCACAAACACGT +
Preference number: 4 (lower is better)
Translates to: QTSRSQSWVLHKYSALNDINLQL*GKPQTR
Trigger: ACGTGTTTGTGGCTTCCCGCACAACTGAAGATTTAT...GTCATTTAAAGCACTATATTTATGAAGGACCCATGACTGGCTTCTACTTGTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
3UTR CAA 72 bp AATGGCTTTGAGGTGACTGGTACGGTGACTACAATGTaGTGTTTGCATGCAGAACATCTTATAAAATTGGAC +
Preference number: 4 (lower is better)
Translates to: NGFEVTGTVTTM*CLHAEHLIKLD
Trigger: GTCCAATTTTATAAGATGTTCTGCATGCAAACACAACATTGTAGTCACCGTACCAGTCACCTCAAAGCCATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR GCA 90 bp ATTCCCTGTAGGGAGAAGGTCAATACTATCAAATGCCACACTTTTTACATTAAGGCATGTCTATCAAACTaGTGCCCAGAGATGTTGATT +
Preference number: 4 (lower is better)
Translates to: IPCREKVNTIKCHTFYIKACLSN*CPEMLI
Trigger: AATCAACATCTCTGGGCAGCAGTTTGATAGACATGC...CTTAATGTAAAAAGTGTGGCATTTGATAGTATTGACCTTCTCCCTACAGGGAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS GCA 90 bp CTGAGCGCGGCCAGGTGGCTCACGTCGCGGAGCTCAGCCAGCGGCTaGGGAGGGTTGCGCGGGCACAGACGCTGGGGCACCACAGTGCGC +
Preference number: 5 (lower is better)
Translates to: LSAARWLTSRSSASG*GGLRGHRRWGTTVR
Trigger: GCGCACTGTGGTGCCCCAGCGTCTGTGCCCGCGCAACCCTCCGCAGCCGCTGGCTGAGCTCCGCGACGTGAGCCACCTGGCCGCGCTCAG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101339.8
ENSMUST00000124279.6
CDS CCA 90 bp CCGCAGAGGTCTGCGAGCTGGCGGAGCAGACTGAGCGCGGCCAGGTaGCTCACGTCGCGGAGCTCAGCCAGCGGCTGCGGAGGGTTGCGC +
Preference number: 5 (lower is better)
Translates to: PQRSASWRSRLSAAR*LTSRSSASGCGGLR
Trigger: GCGCAACCCTCCGCAGCCGCTGGCTGAGCTCCGCGACGTGAGCCACCTGGCCGCGCTCAGTCTGCTCCGCCAGCTCGCAGACCTCTGCGG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101339.8
ENSMUST00000124279.6
CDS TCA 90 bp GAGCCAGCGAGTGGCCGCAGAGGTCTGCGAGCTGGCGGAGCAGACTaGGCGCGGCCAGGTGGCTCACGTCGCGGAGCTCAGCCAGCGGCT +
Preference number: 5 (lower is better)
Translates to: EPASGRRGLRAGGAD*ARPGGSRRGAQPAA
Trigger: AGCCGCTGGCTGAGCTCCGCGACGTGAGCCACCTGGCCGCGCTCAGTCTGCTCCGCCAGCTCGCAGACCTCTGCGGCCACTCGCTGGCTC
72% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101339.8
ENSMUST00000124279.6
CDS GCA 90 bp CCCCTCGAGGTCCTCCAGCAGAGCCAGCGAGTGGCCGCAGAGGTCTaGGAGCTGGCGGAGCAGACTGAGCGCGGCCAGGTGGCTCACGTC +
Preference number: 5 (lower is better)
Translates to: PLEVLQQSQRVAAEV*ELAEQTERGQVAHV
Trigger: GACGTGAGCCACCTGGCCGCGCTCAGTCTGCTCCGCCAGCTCGCAGACCTCTGCGGCCACTCGCTGGCTCTGCTGGAGGACCTCGAGGGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101339.8
ENSMUST00000124279.6
CDS CCA 90 bp AGGTCCTCCAGCAGAGCCAGCGAGTGGCCGCAGAGGTCTGCGAGCTaGCGGAGCAGACTGAGCGCGGCCAGGTGGCTCACGTCGCGGAGC +
Preference number: 5 (lower is better)
Translates to: RSSSRASEWPQRSAS*RSRLSAARWLTSRS
Trigger: GCTCCGCGACGTGAGCCACCTGGCCGCGCTCAGTCTGCTCCGCCAGCTCGCAGACCTCTGCGGCCACTCGCTGGCTCTGCTGGAGGACCT
71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101339.8
ENSMUST00000124279.6
CDS CCA 90 bp AGAGCCAGCAGGTGCCCCTCGAGGTCCTCCAGCAGAGCCAGCGAGTaGCCGCAGAGGTCTGCGAGCTGGCGGAGCAGACTGAGCGCGGCC +
Preference number: 5 (lower is better)
Translates to: RASRCPSRSSSRASE*PQRSASWRSRLSAA
Trigger: GGCCGCGCTCAGTCTGCTCCGCCAGCTCGCAGACCTCTGCGGCCACTCGCTGGCTCTGCTGGAGGACCTCGAGGGGCACCTGCTGGCTCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101339.8
ENSMUST00000124279.6
CDS TCA 90 bp CGGGGGCCTGCCCGAGGAGAGGAACACGTTCACTGGCTGTCGCCATaGCGACCTCGAGTGGGCAGTCGCTGTCGCATTTTCCCGACCCGA +
Preference number: 5 (lower is better)
Translates to: RGPARGEEHVHWLSP*RPRVGSRCRIFPTR
Trigger: TCGGGTCGGGAAAATGCGACAGCGACTGCCCACTCGAGGTCGTCATGGCGACAGCCAGTGAACGTGTTCCTCTCCTCGGGCAGGCCCCCG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS TCA 90 bp GCCATGCTCTCCATGCCGGGATGGTCTGAGGCACTGCGTGCCTGGTaGGCGTCTCCGGGCTCACTAGAAGAGTGTCTCAGTCCTGGTGAG +
Preference number: 5 (lower is better)
Translates to: AMLSMPGWSEALRAW*ASPGSLEECLSPGE
Trigger: CTCACCAGGACTGAGACACTCTTCTAGTGAGCCCGGAGACGCTCACCAGGCACGCAGTGCCTCAGACCATCCCGGCATGGAGAGCATGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101339.8
ENSMUST00000144753.2
CDS TCA 90 bp GGGGACACTGTACACCACTGCCATGCTCTCCATGCCGGGATGGTCTaGGGCACTGCGTGCCTGGTGAGCGTCTCCGGGCTCACTAGAAGA +
Preference number: 5 (lower is better)
Translates to: GDTVHHCHALHAGMV*GTACLVSVSGLTRR
Trigger: TCTTCTAGTGAGCCCGGAGACGCTCACCAGGCACGCAGTGCCTCAGACCATCCCGGCATGGAGAGCATGGCAGTGGTGTACAGTGTCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101339.8
ENSMUST00000144753.2
CDS CCA 90 bp CACCCGAGTCTGTGGGTACAGACAGTGACCGCTCCCGGAACCTGTTaGTCCCACCTGGGCCTGTTTCCAGCCTTGAGGTACCACGGGCAA +
Preference number: 5 (lower is better)
Translates to: HPSLWVQTVTAPGTC*SHLGLFPALRYHGQ
Trigger: TTGCCCGTGGTACCTCAAGGCTGGAAACAGGCCCAGGTGGGACCAACAGGTTCCGGGAGCGGTCACTGTCTGTACCCACAGACTCGGGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 90 bp CTTCCTGGCTCTGGAGGCCGATTCTTTCAGGCAGGGCTCTCACCTTaGGGCCCCCGTCTTCTACACTGGCCTGGGGAGGTTGCTGTGTTC +
Preference number: 5 (lower is better)
Translates to: LPGSGGRFFQAGLSP*GPRLLHWPGEVAVF
Trigger: GAACACAGCAACCTCCCCAGGCCAGTGTAGAAGACGGGGGCCCCAAGGTGAGAGCCCTGCCTGAAAGAATCGGCCTCCAGAGCCAGGAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 90 bp TGGTGCCCTTGGTGTTCCAAGGAGAGGCAAAGGCTCCTAGGCCTCTaGTCCTTGGGCAGTACCAATTCGCCTTCTGGTGGGAGGGCTGGC +
Preference number: 5 (lower is better)
Translates to: WCPWCSKERQRLLGL*SLGSTNSPSGGRAG
Trigger: GCCAGCCCTCCCACCAGAAGGCGAATTGGTACTGCCCAAGGACCAGAGGCCTAGGAGCCTTTGCCTCTCCTTGGAACACCAAGGGCACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp TACCTGTTCATGCTGAGGCATCGTGCCAGCCTCACCCACTTTACACATGGGGCTGGCAGGCACTGCTACTaGGCCCTGGGGCAGCAGCAG +
Preference number: 5 (lower is better)
Translates to: YLFMLRHRASLTHFTHGAGRHCY*ALGQQQ
Trigger: CTGCTGCTGCCCCAGGGCCAAGTAGCAGTGCCTGCC...AGCCCCATGTGTAAAGTGGGTGAGGCTGGCACGATGCCTCAGCATGAACAGGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 90 bp GAGGAGAGGAACACGTTCACTGGCTGTCGCCATGACGACCTCGAGTaGGCAGTCGCTGTCGCATTTTCCCGACCCGAGTTAGCTGCAGCT +
Preference number: 5 (lower is better)
Translates to: EERNTFTGCRHDDLE*AVAVAFSRPELAAA
Trigger: AGCTGCAGCTAACTCGGGTCGGGAAAATGCGACAGCGACTGCCCACTCGAGGTCGTCATGGCGACAGCCAGTGAACGTGTTCCTCTCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 90 bp TCAGGCAGGGCTCTCACCTTGGGGCCCCCGTCTTCTACACTGGCCTaGGGAGGTTGCTGTGTTCCTGAGAAGAAAGCACCAGAGGAACTG +
Preference number: 5 (lower is better)
Translates to: SGRALTLGPPSSTLA*GGCCVPEKKAPEEL
Trigger: CAGTTCCTCTGGTGCTTTCTTCTCAGGAACACAGCAACCTCCCCAGGCCAGTGTAGAAGACGGGGGCCCCAAGGTGAGAGCCCTGCCTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 90 bp GGCAGGCACTGCTACTTGGCCCTGGGGCAGCAGCAGCCTCACCGGTaGGAGAATCAGCTGTATTCTTCACTGGTGAATGGGAGCTGGGTT +
Preference number: 5 (lower is better)
Translates to: GRHCYLALGQQQPHR*ENQLYSSLVNGSWV
Trigger: AACCCAGCTCCCATTCACCAGTGAAGAATACAGCTGATTCTCCCACCGGTGAGGCTGCTGCTGCCCCAGGGCCAAGTAGCAGTGCCTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 90 bp TCAGCAAGCTCCCTTGCCCTCAGGATGCGAGTCCCGTTCACCCAGTaGCAGGCACCTAGCAATTCTTCATCATCCTCCGGGCCAAGCAGG +
Preference number: 5 (lower is better)
Translates to: SASSLALRMRVPFTQ*QAPSNSSSSSGPSR
Trigger: CCTGCTTGGCCCGGAGGATGATGAAGAATTGCTAGGTGCCTGCCACTGGGTGAACGGGACTCGCATCCTGAGGGCAAGGGAGCTTGCTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124279.6
CDS CCA 90 bp TCTCTGACTGGCTGGAGTAACCACTGGAAGGGGACATCAGTCCAGTaGGCCTCCCAGGAGAGGCTACTTCCCTGGCTTCCACCTCAATGG +
Preference number: 5 (lower is better)
Translates to: SLTGWSNHWKGTSVQ*ASQERLLPWLPPQW
Trigger: CCATTGAGGTGGAAGCCAGGGAAGTAGCCTCTCCTGGGAGGCCCACTGGACTGATGTCCCCTTCCAGTGGTTACTCCAGCCAGTCAGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 90 bp GTAGGAGAAGTTAGTGGATACTCCCCAGGGAGAGAGGGCGGCCTGTaGACCAAACTTGGAGGCCTTCGGGCCAATGGAGGTTTCTCGGCT +
Preference number: 5 (lower is better)
Translates to: VGEVSGYSPGREGGL*TKLGGLRANGGFSA
Trigger: AGCCGAGAAACCTCCATTGGCCCGAAGGCCTCCAAGTTTGGTCCACAGGCCGCCCTCTCTCCCTGGGGAGTATCCACTAACTTCTCCTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS TCA 90 bp CTGGTGAGCGTCTCCGGGCTCACTAGAAGAGTGTCTCAGTCCTGGTaGGGTGAGACTTGGGAACCGAGCTTCCTGCCCAACAGCAACTCT +
Preference number: 5 (lower is better)
Translates to: LVSVSGLTRRVSQSW*GETWEPSFLPNSNS
Trigger: AGAGTTGCTGTTGGGCAGGAAGCTCGGTTCCCAAGTCTCACCTCACCAGGACTGAGACACTCTTCTAGTGAGCCCGGAGACGCTCACCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101339.8
ENSMUST00000144753.2
CDS TCA 90 bp AGCAGCAGCCTCACCGGTGGGAGAATCAGCTGTATTCTTCACTGGTaGATGGGAGCTGGGTTTGCTTCCCGTGAAGCCCTCCCCAGTCTC +
Preference number: 5 (lower is better)
Translates to: SSSLTGGRISCILHW*MGAGFASREALPSL
Trigger: GAGACTGGGGAGGGCTTCACGGGAAGCAAACCCAGCTCCCATTCACCAGTGAAGAATACAGCTGATTCTCCCACCGGTGAGGCTGCTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS GCA 90 bp GGCTGCCTGTGGGGCTGCTGCTGTGACCTGTTGCTGAATGCATCCTaGTGCTTTGGCTCTTACTCCTCGGTTGCTTGTGGTGAGAGTTGC +
Preference number: 5 (lower is better)
Translates to: GCLWGCCCDLLLNAS*CFGSYSSVACGESC
Trigger: GCAACTCTCACCACAAGCAACCGAGGAGTAAGAGCCAAAGCAGCAGGATGCATTCAGCAACAGGTCACAGCAGCAGCCCCACAGGCAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144753.2
CDS CCA 90 bp ATCACGGGTGACAAAGAGCGTGGCCGCCTCCTTAGGAACCAGAGGTaGGAGTGTGTTCAGAGGGACCCAAGAATTGCCCGAGGAAGGGTT +
Preference number: 5 (lower is better)
Translates to: ITGDKERGRLLRNQR*ECVQRDPRIARGRV
Trigger: AACCCTTCCTCGGGCAATTCTTGGGTCCCTCTGAACACACTCCCACCTCTGGTTCCTAAGGAGGCGGCCACGCTCTTTGTCACCCGTGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 90 bp TTTGAGCATTGGCACAGCTGGGTGACCTTGAGCATCTGGGTGAGGTaGGTGGTGCCCTTGGTGTTCCAAGGAGAGGCAAAGGCTCCTAGG +
Preference number: 5 (lower is better)
Translates to: FEHWHSWVTLSIWVR*VVPLVFQGEAKAPR
Trigger: CCTAGGAGCCTTTGCCTCTCCTTGGAACACCAAGGGCACCACCCACCTCACCCAGATGCTCAAGGTCACCCAGCTGTGCCAATGCTCAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS TCA 90 bp GTGAGACTTGGGAACCGAGCTTCCTGCCCAACAGCAACTCTTCCCTaGACAACTTGTGGAGCTGAGTGGCCAGGCCTGATGTCTGAGGTG +
Preference number: 5 (lower is better)
Translates to: VRLGNRASCPTATLP*TTCGAEWPGLMSEV
Trigger: CACCTCAGACATCAGGCCTGGCCACTCAGCTCCACAAGTTGTTCAGGGAAGAGTTGCTGTTGGGCAGGAAGCTCGGTTCCCAAGTCTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101339.8
ENSMUST00000144753.2
CDS GCA 90 bp GGATCTTTGCCTTCTGTGCCGTGCCTCCTGCTCAGTGCTGAGGGCTaGAATGTTGTCAGTACTGTTACTGCCCTCGGAGCTTGTACTGGC +
Preference number: 5 (lower is better)
Translates to: GSLPSVPCLLLSAEG*NVVSTVTALGACTG
Trigger: GCCAGTACAAGCTCCGAGGGCAGTAACAGTACTGACAACATTGCAGCCCTCAGCACTGAGCAGGAGGCACGGCACAGAAGGCAAAGATCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS GCA 90 bp TGCCTGTGGGGCTGCTGCTGTGACCTGTTGCTGAATGCATCCTGCTaGTTTGGCTCTTACTCCTCGGTTGCTTGTGGTGAGAGTTGCCCA +
Preference number: 5 (lower is better)
Translates to: CLWGCCCDLLLNASC*FGSYSSVACGESCP
Trigger: TGGGCAACTCTCACCACAAGCAACCGAGGAGTAAGAGCCAAAGCAGCAGGATGCATTCAGCAACAGGTCACAGCAGCAGCCCCACAGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144753.2
CDS CCA 90 bp CAGACTGTGTGGAGCAGGGCTGAAGCCAGAGCCTCTCCTTTAGGATaGGTAGAGGGAAGGGGTCATTCCAGGCACTTTGCTTGTTGGCAG +
Preference number: 5 (lower is better)
Translates to: QTVWSRAEARASPLG*VEGRGHSRHFACWQ
Trigger: CTGCCAACAAGCAAAGTGCCTGGAATGACCCCTTCCCTCTACCCATCCTAAAGGAGAGGCTCTGGCTTCAGCCCTGCTCCACACAGTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 90 bp TCCTGGATCTTTGAGCATTGGCACAGCTGGGTGACCTTGAGCATCTaGGTGAGGTGGGTGGTGCCCTTGGTGTTCCAAGGAGAGGCAAAG +
Preference number: 5 (lower is better)
Translates to: SWIFEHWHSWVTLSI*VRWVVPLVFQGEAK
Trigger: CTTTGCCTCTCCTTGGAACACCAAGGGCACCACCCACCTCACCCAGATGCTCAAGGTCACCCAGCTGTGCCAATGCTCAAAGATCCAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 90 bp GTGAGAGAACTGCGTACTTCCTGGATCTTTGAGCATTGGCACAGCTaGGTGACCTTGAGCATCTGGGTGAGGTGGGTGGTGCCCTTGGTG +
Preference number: 5 (lower is better)
Translates to: VRELRTSWIFEHWHS*VTLSIWVRWVVPLV
Trigger: CACCAAGGGCACCACCCACCTCACCCAGATGCTCAAGGTCACCCAGCTGTGCCAATGCTCAAAGATCCAGGAAGTACGCAGTTCTCTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 90 bp GAGAGAGGGCGGCCTGTGGACCAAACTTGGAGGCCTTCGGGCCAATaGAGGTTTCTCGGCTATGGGAGGTTTCACTTTTCTCTCTGGCAT +
Preference number: 5 (lower is better)
Translates to: ERGRPVDQTWRPSGQ*RFLGYGRFHFSLWH
Trigger: ATGCCAGAGAGAAAAGTGAAACCTCCCATAGCCGAGAAACCTCCATTGGCCCGAAGGCCTCCAAGTTTGGTCCACAGGCCGCCCTCTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 90 bp CCTGGGGAGGTTGCTGTGTTCCTGAGAAGAAAGCACCAGAGGAACTaGCAAGAGGTGAGAGGACAAGGCTGGAGGATGCTGTTGACTCCC +
Preference number: 5 (lower is better)
Translates to: PGEVAVFLRRKHQRN*QEVRGQGWRMLLTP
Trigger: GGGAGTCAACAGCATCCTCCAGCCTTGTCCTCTCACCTCTTGCCAGTTCCTCTGGTGCTTTCTTCTCAGGAACACAGCAACCTCCCCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 90 bp GCAGCCTCACCGGTGGGAGAATCAGCTGTATTCTTCACTGGTGAATaGGAGCTGGGTTTGCTTCCCGTGAAGCCCTCCCCAGTCTCTTTC +
Preference number: 5 (lower is better)
Translates to: AASPVGESAVFFTGE*ELGLLPVKPSPVSF
Trigger: GAAAGAGACTGGGGAGGGCTTCACGGGAAGCAAACCCAGCTCCCATTCACCAGTGAAGAATACAGCTGATTCTCCCACCGGTGAGGCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp GTTGGCCAAATAGCAGTACCTAGATGGCAAAAAGTAGCCCTTGTATCCTGGGCCCGCTCCCGGAACCTGTaGGTCCCACCTGGGCCTGTT +
Preference number: 5 (lower is better)
Translates to: VGQIAVPRWQKVALVSWARSRNL*VPPGPV
Trigger: AACAGGCCCAGGTGGGACCAACAGGTTCCGGGAGCG...GGCCCAGGATACAAGGGCTACTTTTTGCCATCTAGGTACTGCTATTTGGCCAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS TCA 90 bp CCAGAGATGTTGATTGGCACAAGGTCAGACTGTGTGGAGCAGGGCTaGAGCCAGAGCCTCTCCTTTAGGATGGGTAGAGGGAAGGGGTCA +
Preference number: 5 (lower is better)
Translates to: PEMLIGTRSDCVEQG*SQSLSFRMGRGKGS
Trigger: TGACCCCTTCCCTCTACCCATCCTAAAGGAGAGGCTCTGGCTTCAGCCCTGCTCCACACAGTCTGACCTTGTGCCAATCAACATCTCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS TCA 90 bp TGGGCAGTACCAATTCGCCTTCTGGTGGGAGGGCTGGCTCATCTTTaGCGAGTGAGACACTTCGCATGGGTGGAGAGGGCTTCTTTTTGG +
Preference number: 5 (lower is better)
Translates to: WAVPIRLLVGGLAHL*RVRHFAWVERASFW
Trigger: CCAAAAAGAAGCCCTCTCCACCCATGCGAAGTGTCTCACTCGTCAAAGATGAGCCAGCCCTCCCACCAGAAGGCGAATTGGTACTGCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 90 bp GAAGGCCAATCTTGGGAGGTCTTTCTGGTATCTGTCTTCGTAGAGTaGGGTGCTCAGAGTAGCTGGGTAGCCCAGTGCATCCTGCTGGGT +
Preference number: 5 (lower is better)
Translates to: EGQSWEVFLVSVFVE*GAQSSWVAQCILLG
Trigger: ACCCAGCAGGATGCACTGGGCTACCCAGCTACTCTGAGCACCCCACTCTACGAAGACAGATACCAGAAAGACCTCCCAAGATTGGCCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 90 bp GGCCTGTTTCCAGCCTTGAGGTACCACGGGCAAGAAGGCCAATCTTaGGAGGTCTTTCTGGTATCTGTCTTCGTAGAGTGGGGTGCTCAG +
Preference number: 5 (lower is better)
Translates to: GLFPALRYHGQEGQS*EVFLVSVFVEWGAQ
Trigger: CTGAGCACCCCACTCTACGAAGACAGATACCAGAAAGACCTCCCAAGATTGGCCTTCTTGCCCGTGGTACCTCAAGGCTGGAAACAGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 90 bp GGTACCGGAGGTGGAATCTTGGTCATCTTTTTCTCAGCTTCTTCCTaGCTCTGGAGGCCGATTCTTTCAGGCAGGGCTCTCACCTTGGGG +
Preference number: 5 (lower is better)
Translates to: GTGGGILVIFFSASS*LWRPILSGRALTLG
Trigger: CCCCAAGGTGAGAGCCCTGCCTGAAAGAATCGGCCTCCAGAGCCAGGAAGAAGCTGAGAAAAAGATGACCAAGATTCCACCTCCGGTACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 90 bp GCCGCTGAGGGGCGGGTCCTGGGAGTTGCCTTACTTCCCTTCTTCTaGAGCAAGGCCTTGAAATCATCATTTCTACCAGCATCTAGGCAG +
Preference number: 5 (lower is better)
Translates to: AAEGRVLGVALLPFF*SKALKSSFLPASRQ
Trigger: CTGCCTAGATGCTGGTAGAAATGATGATTTCAAGGCCTTGCTCCAGAAGAAGGGAAGTAAGGCAACTCCCAGGACCCGCCCCTCAGCGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp TACCTGTTCATGCTGAGGCATCGTGCCAGCCTCACCCACTTTACACATGGGGCTCAGGCACTTTGCTTGTaGGCAGTAGACAGGCTCAGG +
Preference number: 5 (lower is better)
Translates to: YLFMLRHRASLTHFTHGAQALCL*AVDRLR
Trigger: CCTGAGCCTGTCTACTGCCAACAAGCAAAGTGCCTG...AGCCCCATGTGTAAAGTGGGTGAGGCTGGCACGATGCCTCAGCATGAACAGGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp AACCTTGGGGTCATGAAGCTAACAGGAATGGATTGGCTGCCCATGGCCTTGACTAGAGCTGGGAGGGTGTaGTCGCTCTGGAGGTGGAAG +
Preference number: 5 (lower is better)
Translates to: NLGVMKLTGMDWLPMALTRAGRV*SLWRWK
Trigger: CTTCCACCTCCAGAGCGACAACACCCTCCCAGCTCT...AGTCAAGGCCATGGGCAGCCAATCCATTCCTGTTAGCTTCATGACCCCAAGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp CCAAAGACTGGGTTTGTGATCTCTCCTACTTACTGCTACTGGAACGGGAATCCAGGCTGGAGGATGCTGTaGACTCCCCGGGGAAGCTGG +
Preference number: 5 (lower is better)
Translates to: PKTGFVISPTYCYWNGNPGWRML*TPRGSW
Trigger: CCAGCTTCCCCGGGGAGTCAACAGCATCCTCCAGCC...TGGATTCCCGTTCCAGTAGCAGTAAGTAGGAGAGATCACAAACCCAGTCTTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 90 bp ATACCAGTGGTGAGAGAACTGCGTACTTCCTGGATCTTTGAGCATTaGCACAGCTGGGTGACCTTGAGCATCTGGGTGAGGTGGGTGGTG +
Preference number: 5 (lower is better)
Translates to: IPVVRELRTSWIFEH*HSWVTLSIWVRWVV
Trigger: CACCACCCACCTCACCCAGATGCTCAAGGTCACCCAGCTGTGCCAATGCTCAAAGATCCAGGAAGTACGCAGTTCTCTCACCACTGGTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 90 bp ACGAGTGTCGAAAACTTGCATGTCTATCAAACTGCTGCCCTGTGCTaGCTACATCAGCAAGCTCCCTTGCCCTCAGGATGCGAGTCCCGT +
Preference number: 5 (lower is better)
Translates to: TSVENLHVYQTAALC*LHQQAPLPSGCESR
Trigger: ACGGGACTCGCATCCTGAGGGCAAGGGAGCTTGCTGATGTAGCCAGCACAGGGCAGCAGTTTGATAGACATGCAAGTTTTCGACACTCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124279.6
CDS-3UTR CAA 90 bp TCTGGCAACAAATGGAGAAACAGCAAAGAAACATTTGGTGCAGAACCTGCCCCCCGCCTCAGGGTGGACTaGGGGTTCACGGCTGTCTCT +
Preference number: 5 (lower is better)
Translates to: SGNKWRNSKETFGAEPAPRLRVD*GFTAVS
Trigger: AGAGACAGCCGTGAACCCCAAGTCCACCCTGAGGCG...GGGGGCAGGTTCTGCACCAAATGTTTCTTTGCTGTTTCTCCATTTGTTGCCAGA
54% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS TCA 90 bp TACTTTTGGATCTTTGCCTTCTGTGCCGTGCCTCCTGCTCAGTGCTaGGGGCTGCAATGTTGTCAGTACTGTTACTGCCCTCGGAGCTTG +
Preference number: 5 (lower is better)
Translates to: YFWIFAFCAVPPAQC*GLQCCQYCYCPRSL
Trigger: CAAGCTCCGAGGGCAGTAACAGTACTGACAACATTGCAGCCCTCAGCACTGAGCAGGAGGCACGGCACAGAAGGCAAAGATCCAAAAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS TCA 90 bp TACCAATTCGCCTTCTGGTGGGAGGGCTGGCTCATCTTTGACGAGTaGGACACTTCGCATGGGTGGAGAGGGCTTCTTTTTGGCCTTCTT +
Preference number: 5 (lower is better)
Translates to: YQFAFWWEGWLIFDE*DTSHGWRGLLFGLL
Trigger: AAGAAGGCCAAAAAGAAGCCCTCTCCACCCATGCGAAGTGTCTCACTCGTCAAAGATGAGCCAGCCCTCCCACCAGAAGGCGAATTGGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS GCA 90 bp CAGTACTGTTACTGCCCTCGGAGCTTGTACTGGCATAAGGCAGGATaGGGGTCTCACTGGTCTTCTGTTCTTCGTCATAGTCCACTGAGG +
Preference number: 5 (lower is better)
Translates to: QYCYCPRSLYWHKAG*GSHWSSVLRHSPLR
Trigger: CCTCAGTGGACTATGACGAAGAACAGAAGACCAGTGAGACCCGCATCCTGCCTTATGCCAGTACAAGCTCCGAGGGCAGTAACAGTACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS GCA 90 bp ACAACGAGTGTCGAAAACTTGCATGTCTATCAAACTGCTGCCCTGTaGTGGCTACATCAGCAAGCTCCCTTGCCCTCAGGATGCGAGTCC +
Preference number: 5 (lower is better)
Translates to: TTSVENLHVYQTAAL*WLHQQAPLPSGCES
Trigger: GGACTCGCATCCTGAGGGCAAGGGAGCTTGCTGATGTAGCCAGCACAGGGCAGCAGTTTGATAGACATGCAAGTTTTCGACACTCGTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124279.6
CDS CCA 90 bp TCCAGGAAGTGGAGAATGTTGACTCTGTTGGTCCATTGCAAGAACTaGGGACACTGTACACCACTGCCATGCTCTCCATGCCGGGATGGT +
Preference number: 5 (lower is better)
Translates to: SRKWRMLTLLVHCKN*GHCTPLPCSPCRDG
Trigger: ACCATCCCGGCATGGAGAGCATGGCAGTGGTGTACAGTGTCCCCAGTTCTTGCAATGGACCAACAGAGTCAACATTCTCCACTTCCTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101339.8
ENSMUST00000144753.2
CDS CCA 90 bp GGGCTGCAATGTTGTCAGTACTGTTACTGCCCTCGGAGCTTGTACTaGCATAAGGCAGGATGCGGGTCTCACTGGTCTTCTGTTCTTCGT +
Preference number: 5 (lower is better)
Translates to: GLQCCQYCYCPRSLY*HKAGCGSHWSSVLR
Trigger: ACGAAGAACAGAAGACCAGTGAGACCCGCATCCTGCCTTATGCCAGTACAAGCTCCGAGGGCAGTAACAGTACTGACAACATTGCAGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp AAGCAGAGGACCAATGAGAGCACTGTATGTTATGCACACACTCGGGTCCAATTCAACAGGCTCTGGAGATaGAGCTGCGCCTCGCGAAGC +
Preference number: 5 (lower is better)
Translates to: KQRTNESTVCYAHTRVQFNRLWR*SCASRS
Trigger: GCTTCGCGAGGCGCAGCTCAATCTCCAGAGCCTGTT...GAATTGGACCCGAGTGTGTGCATAACATACAGTGCTCTCATTGGTCCTCTGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp AACCTTGGGGTCATGAAGCTAACAGGAATGGATTGGCTGCCCATGGCCTTGACTAGGGCTGGCTCATCTTaGACGAGTGAGACACTTCGC +
Preference number: 5 (lower is better)
Translates to: NLGVMKLTGMDWLPMALTRAGSS*TSETLR
Trigger: GCGAAGTGTCTCACTCGTCAAAGATGAGCCAGCCCT...AGTCAAGGCCATGGGCAGCCAATCCATTCCTGTTAGCTTCATGACCCCAAGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS TCA 90 bp GTAATCTGGACTCTCAATGTCGTCTTCTGGCTCAGACTTGCTGACTaGCCTCAGGCGAACAGAACGGAGGTCAGACTGAGTAACCATGGG +
Preference number: 5 (lower is better)
Translates to: VIWTLNVVFWLRLAD*PQANRTEVRLSNHG
Trigger: CCCATGGTTACTCAGTCTGACCTCCGTTCTGTTCGCCTGAGGTCAGTCAGCAAGTCTGAGCCAGAAGACGACATTGAGAGTCCAGATTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp AACCTTGGGGTCATGAAGCTAACAGGAATGGATTGGCTGCCCATGGCCTTGACTGACTCTGTTGGTCCATaGCAAGAACTGGGGACACTG +
Preference number: 5 (lower is better)
Translates to: NLGVMKLTGMDWLPMALTDSVGP*QELGTL
Trigger: CAGTGTCCCCAGTTCTTGCAATGGACCAACAGAGTC...AGTCAAGGCCATGGGCAGCCAATCCATTCCTGTTAGCTTCATGACCCCAAGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp AACCTTGGGGTCATGAAGCTAACAGGAATGGATTGGCTGCCCATGGCCTTGACTCTGAGGGCTGCAATGTaGTCAGTACTGTTACTGCCC +
Preference number: 5 (lower is better)
Translates to: NLGVMKLTGMDWLPMALTLRAAM*SVLLLP
Trigger: GGGCAGTAACAGTACTGACAACATTGCAGCCCTCAG...AGTCAAGGCCATGGGCAGCCAATCCATTCCTGTTAGCTTCATGACCCCAAGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp AACCTTGGGGTCATGAAGCTAACAGGAATGGATTGGCTGCCCATGGCCTTGACTACAGATCCAGGGTGGTaGAAGAGGTCAGTGGTAGGT +
Preference number: 5 (lower is better)
Translates to: NLGVMKLTGMDWLPMALTTDPGW*KRSVVG
Trigger: ACCTACCACTGACCTCTTCAACCACCCTGGATCTGT...AGTCAAGGCCATGGGCAGCCAATCCATTCCTGTTAGCTTCATGACCCCAAGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp GTTTGCAGCCATGGGTGCACACAGTGTGAGAACTGTGAATCTGAACTCCAGTTCTCTTCTGGCTCAGACTaGCTGACTGACCTCAGGCGA +
Preference number: 5 (lower is better)
Translates to: VCSHGCTQCENCESELQFSSGSD*LTDLRR
Trigger: TCGCCTGAGGTCAGTCAGCAAGTCTGAGCCAGAAGA...GAACTGGAGTTCAGATTCACAGTTCTCACACTGTGTGCACCCATGGCTGCAAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS TCA 90 bp TTTTTCTGTGTCAGTGTGAAGAGGCGAAGTCACCCCTTTACCAGGTaGCTTCTGGTCATCACCAGTGGAGGGACACTTGCCATCTTCCTC +
Preference number: 5 (lower is better)
Translates to: FFCVSVKRRSHPFTR*LLVITSGGTLAIFL
Trigger: GAGGAAGATGGCAAGTGTCCCTCCACTGGTGATGACCAGAAGTCACCTGGTAAAGGGGTGACTTCGCCTCTTCACACTGACACAGAAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS GCA 90 bp GAGGGCTTCTTTTTGGCCTTCTTGAGTGAAATACTTTTGGATCTTTaGCTTCTGTGCCGTGCCTCCTGCTCAGTGCTGAGGGCTGCAATG +
Preference number: 5 (lower is better)
Translates to: EGFFLAFLSEILLDL*LLCRASCSVLRAAM
Trigger: CATTGCAGCCCTCAGCACTGAGCAGGAGGCACGGCACAGAAGGCAAAGATCCAAAAGTATTTCACTCAAGAAGGCCAAAAAGAAGCCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 90 bp CTTCCAGTCAGTAAGATACCAGTGGTGAGAGAACTGCGTACTTCCTaGATCTTTGAGCATTGGCACAGCTGGGTGACCTTGAGCATCTGG +
Preference number: 5 (lower is better)
Translates to: LPVSKIPVVRELRTS*IFEHWHSWVTLSIW
Trigger: CCAGATGCTCAAGGTCACCCAGCTGTGCCAATGCTCAAAGATCCAGGAAGTACGCAGTTCTCTCACCACTGGTATCTTACTGACTGGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 90 bp TGGTTTTGCTGCGGATGGAGATACTCATCCCCGACAGATCCAGGGTaGTTGAAGAGGTCAGTGGTAGGTCAAATGATAACCGTGACTTGC +
Preference number: 5 (lower is better)
Translates to: WFCCGWRYSSPTDPG*LKRSVVGQMITVTC
Trigger: GCAAGTCACGGTTATCATTTGACCTACCACTGACCTCTTCAACCACCCTGGATCTGTCGGGGATGAGTATCTCCATCCGCAGCAAAACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp TGTGAGAACTGTGAATCTGAACTCCAGTTCCTGAAAGTGGGAGGGGTAGGATGGGCACACTGGGCTTTTTaGGTACCGGAGGTGGAATCT +
Preference number: 5 (lower is better)
Translates to: CENCESELQFLKVGGVGWAHWAF*VPEVES
Trigger: AGATTCCACCTCCGGTACCAAAAAAGCCCAGTGTGC...CCATCCTACCCCTCCCACTTTCAGGAACTGGAGTTCAGATTCACAGTTCTCACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS TCA 90 bp TCAGACTTGCTGACTGACCTCAGGCGAACAGAACGGAGGTCAGACTaGGTAACCATGGGCATGATCGGTTGGTTTGGACTAGTTTTCTGT +
Preference number: 5 (lower is better)
Translates to: SDLLTDLRRTERRSD*VTMGMIGWFGLVFC
Trigger: ACAGAAAACTAGTCCAAACCAACCGATCATGCCCATGGTTACTCAGTCTGACCTCCGTTCTGTTCGCCTGAGGTCAGTCAGCAAGTCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS GCA 90 bp TTGAGTGAAATACTTTTGGATCTTTGCCTTCTGTGCCGTGCCTCCTaGTCAGTGCTGAGGGCTGCAATGTTGTCAGTACTGTTACTGCCC +
Preference number: 5 (lower is better)
Translates to: LSEILLDLCLLCRAS*SVLRAAMLSVLLLP
Trigger: GGGCAGTAACAGTACTGACAACATTGCAGCCCTCAGCACTGAGCAGGAGGCACGGCACAGAAGGCAAAGATCCAAAAGTATTTCACTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS GCA 90 bp GTGTTAAACAACGAGTGTCGAAAACTTGCATGTCTATCAAACTGCTaGCCTGTGCTGGCTACATCAGCAAGCTCCCTTGCCCTCAGGATG +
Preference number: 5 (lower is better)
Translates to: VLNNECRKLACLSNC*PVLATSASSLALRM
Trigger: CATCCTGAGGGCAAGGGAGCTTGCTGATGTAGCCAGCACAGGGCAGCAGTTTGATAGACATGCAAGTTTTCGACACTCGTTGTTTAACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124279.6
CDS GCA 90 bp TCTGTGTTAAACAACGAGTGTCGAAAACTTGCATGTCTATCAAACTaGTGCCCTGTGCTGGCTACATCAGCAAGCTCCCTTGCCCTCAGG +
Preference number: 5 (lower is better)
Translates to: SVLNNECRKLACLSN*CPVLATSASSLALR
Trigger: CCTGAGGGCAAGGGAGCTTGCTGATGTAGCCAGCACAGGGCAGCAGTTTGATAGACATGCAAGTTTTCGACACTCGTTGTTTAACACAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124279.6
CDS GCA 90 bp GGGGTTCACGGCTGTCTCTGTGTTAAACAACGAGTGTCGAAAACTTaGATGTCTATCAAACTGCTGCCCTGTGCTGGCTACATCAGCAAG +
Preference number: 5 (lower is better)
Translates to: GVHGCLCVKQRVSKT*MSIKLLPCAGYISK
Trigger: CTTGCTGATGTAGCCAGCACAGGGCAGCAGTTTGATAGACATGCAAGTTTTCGACACTCGTTGTTTAACACAGAGACAGCCGTGAACCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124279.6
CDS CCA 90 bp GGCCAATGGAGGTTTCTCGGCTATGGGAGGTTTCACTTTTCTCTCTaGCATGGTGAAGACTTCCTCTGCTCCAGGTTCCTCTATGTAATC +
Preference number: 5 (lower is better)
Translates to: GQWRFLGYGRFHFSL*HGEDFLCSRFLYVI
Trigger: GATTACATAGAGGAACCTGGAGCAGAGGAAGTCTTCACCATGCCAGAGAGAAAAGTGAAACCTCCCATAGCCGAGAAACCTCCATTGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp TACCTGTTCATGCTGAGGCATCGTGCCAGCCTCACCCACTTTACACATGGGGCTTTCCTCATATTCTTCTaGCAACAGGCTCTGGAGATT +
Preference number: 5 (lower is better)
Translates to: YLFMLRHRASLTHFTHGAFLIFF*QQALEI
Trigger: AATCTCCAGAGCCTGTTGCAAGAAGAATATGAGGAA...AGCCCCATGTGTAAAGTGGGTGAGGCTGGCACGATGCCTCAGCATGAACAGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp CCTGCAAACACTGAATGGACATTCCCAGGCCTAAGTCTTTTCTCTGACTGTGAACGGCTCACCTTGGTTTaGCTGCGGATGGAGATACTC +
Preference number: 5 (lower is better)
Translates to: PANTEWTFPGLSLFSDCERLTLV*LRMEIL
Trigger: GAGTATCTCCATCCGCAGCAAAACCAAGGTGAGCCG...TTCACAGTCAGAGAAAAGACTTAGGCCTGGGAATGTCCATTCAGTGTTTGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp TCTGGCAACAAATGGAGAAACAGCAAAGAAACATTTGGTGCAGAACCTGCCCCCCACTGTGTAGCTGTCTaGGGGAAGCTGCTTCATGTG +
Preference number: 5 (lower is better)
Translates to: SGNKWRNSKETFGAEPAPHCVAV*GKLLHV
Trigger: CACATGAAGCAGCTTCCCCAAGACAGCTACACAGTG...GGGGGCAGGTTCTGCACCAAATGTTTCTTTGCTGTTTCTCCATTTGTTGCCAGA
50% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp TTCCCAGGCCTAAGTCTTTTCTCTGACTGTGAAGTCTCTGCCCCAAATCCTTTTCATGCAGGCATCCATTaGAGCTACAGGGGAGGTGAG +
Preference number: 5 (lower is better)
Translates to: FPGLSLFSDCEVSAPNPFHAGIH*SYRGGE
Trigger: CTCACCTCCCCTGTAGCTCAAATGGATGCCTGCATG...AAAAGGATTTGGGGCAGAGACTTCACAGTCAGAGAAAAGACTTAGGCCTGGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS TCA 90 bp GAGGTTTCTCGGCTATGGGAGGTTTCACTTTTCTCTCTGGCATGGTaGAGACTTCCTCTGCTCCAGGTTCCTCTATGTAATCTGGACTCT +
Preference number: 5 (lower is better)
Translates to: EVSRLWEVSLFSLAW*RLPLLQVPLCNLDS
Trigger: AGAGTCCAGATTACATAGAGGAACCTGGAGCAGAGGAAGTCTTCACCATGCCAGAGAGAAAAGTGAAACCTCCCATAGCCGAGAAACCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS GCA 90 bp GGGTGGTTGAAGAGGTCAGTGGTAGGTCAAATGATAACCGTGACTTaGAGATTTTCTCCATTGGTGATGTTGGGGGCAGTGATGACTTCC +
Preference number: 5 (lower is better)
Translates to: GWLKRSVVGQMITVT*RFSPLVMLGAVMTS
Trigger: GGAAGTCATCACTGCCCCCAACATCACCAATGGAGAAAATCTGCAAGTCACGGTTATCATTTGACCTACCACTGACCTCTTCAACCACCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp TCATTCTCACACCAAGGCGGAGTCAAAGCACAAAACAGAGACAAAATGGCAGGACGCTCAGCTGCCGTTTaGCAGGCATCAGTACAAACT +
Preference number: 5 (lower is better)
Translates to: SFSHQGGVKAQNRDKMAGRSAAV*QASVQT
Trigger: AGTTTGTACTGATGCCTGCAAAACGGCAGCTGAGCG...TCCTGCCATTTTGTCTCTGTTTTGTGCTTTGACTCCGCCTTGGTGTGAGAATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp TCATTCTCACACCAAGGCGGAGTCAAAGCACAAAACAGAGACAAAATGGCAGGATTCCAGGCACTTTGCTaGTTGGCAGTAGACAGGCTC +
Preference number: 5 (lower is better)
Translates to: SFSHQGGVKAQNRDKMAGFQALC*LAVDRL
Trigger: GAGCCTGTCTACTGCCAACAAGCAAAGTGCCTGGAA...TCCTGCCATTTTGTCTCTGTTTTGTGCTTTGACTCCGCCTTGGTGTGAGAATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp GTTGGCCAAATAGCAGTACCTAGATGGCAAAAAGTAGCCCTTGTATCCTGGGCCAGGAAGTGGAGAATGTaGACTCTGTTGGTCCATTGC +
Preference number: 5 (lower is better)
Translates to: VGQIAVPRWQKVALVSWARKWRM*TLLVHC
Trigger: GCAATGGACCAACAGAGTCAACATTCTCCACTTCCT...GGCCCAGGATACAAGGGCTACTTTTTGCCATCTAGGTACTGCTATTTGGCCAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp AAGCAGAGGACCAATGAGAGCACTGTATGTTATGCACACACTCGGGTCCAATTCGCAAGAAGGCCAATCTaGGGAGGTCTTTCTGGTATC +
Preference number: 5 (lower is better)
Translates to: KQRTNESTVCYAHTRVQFARRPI*GGLSGI
Trigger: GATACCAGAAAGACCTCCCAAGATTGGCCTTCTTGC...GAATTGGACCCGAGTGTGTGCATAACATACAGTGCTCTCATTGGTCCTCTGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS TCA 90 bp ACACGTCATCCTCCTCCTCTGCAATCCATTCGGCTGTTTTATCACTaGTTAAACTTTTCTCTTCAGCACTCGGTTCCACTGACCTCCCTG +
Preference number: 5 (lower is better)
Translates to: TRHPPPLQSIRLFYH*LNFSLQHSVPLTSL
Trigger: CAGGGAGGTCAGTGGAACCGAGTGCTGAAGAGAAAAGTTTAATCAGTGATAAAACAGCCGAATGGATTGCAGAGGAGGAGGATGACGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS GCA 90 bp GGGGTTCACGGCTGTCTCTGTGTTAAACAACGAGTGTCGAAAACTTaGATGTCTATCAAACTGCTGCCCAGAGATGTTGATTGGCACAAG +
Preference number: 5 (lower is better)
Translates to: GVHGCLCVKQRVSKT*MSIKLLPRDVDWHK
Trigger: CTTGTGCCAATCAACATCTCTGGGCAGCAGTTTGATAGACATGCAAGTTTTCGACACTCGTTGTTTAACACAGAGACAGCCGTGAACCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS GCA 90 bp TTTTTGGCCTTCTTGAGTGAAATACTTTTGGATCTTTGCCTTCTGTaGCGTGCCTCCTGCTCAGTGCTGAGGGCTGCAATGTTGTCAGTA +
Preference number: 5 (lower is better)
Translates to: FLAFLSEILLDLCLL*RASCSVLRAAMLSV
Trigger: TACTGACAACATTGCAGCCCTCAGCACTGAGCAGGAGGCACGGCACAGAAGGCAAAGATCCAAAAGTATTTCACTCAAGAAGGCCAAAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp TGTGAGAACTGTGAATCTGAACTCCAGTTCCTGAAAGTGGGAGGGGTAGGATGGGGAGAGGGCTTCTTTTaGGCCTTCTTGAGTGAAATA +
Preference number: 5 (lower is better)
Translates to: CENCESELQFLKVGGVGWGEGFF*AFLSEI
Trigger: TATTTCACTCAAGAAGGCCAAAAAGAAGCCCTCTCC...CCATCCTACCCCTCCCACTTTCAGGAACTGGAGTTCAGATTCACAGTTCTCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp CAGACAAGTAGAAGCCAGTCATGGGTCCTTCATAAATATAGTGCTTTAAATGACCACAGCTGGGTGACCTaGAGCATCTGGGTGAGGTGG +
Preference number: 5 (lower is better)
Translates to: QTSRSQSWVLHKYSALNDHSWVT*SIWVRW
Trigger: CCACCTCACCCAGATGCTCAAGGTCACCCAGCTGTG...GTCATTTAAAGCACTATATTTATGAAGGACCCATGACTGGCTTCTACTTGTCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS GCA 90 bp TATGGGAGGTTTCACTTTTCTCTCTGGCATGGTGAAGACTTCCTCTaGTCCAGGTTCCTCTATGTAATCTGGACTCTCAATGTCGTCTTC +
Preference number: 5 (lower is better)
Translates to: YGRFHFSLWHGEDFL*SRFLYVIWTLNVVF
Trigger: GAAGACGACATTGAGAGTCCAGATTACATAGAGGAACCTGGAGCAGAGGAAGTCTTCACCATGCCAGAGAGAAAAGTGAAACCTCCCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp GTTTGCAGCCATGGGTGCACACAGTGTGAGAACTGTGAATCTGAACTCCAGTTCACGAGTGTCGAAAACTaGCATGTCTATCAAACTGCT +
Preference number: 5 (lower is better)
Translates to: VCSHGCTQCENCESELQFTSVEN*HVYQTA
Trigger: AGCAGTTTGATAGACATGCAAGTTTTCGACACTCGT...GAACTGGAGTTCAGATTCACAGTTCTCACACTGTGTGCACCCATGGCTGCAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp GGTTCTGGTGTTCATTTGATTCCCTGTAGGGAGAAGGTCAATACTATCAAATGCTCTCCATTGGTGATGTaGGGGGCAGTGATGACTTCC +
Preference number: 5 (lower is better)
Translates to: GSGVHLIPCREKVNTIKCSPLVM*GAVMTS
Trigger: GGAAGTCATCACTGCCCCCAACATCACCAATGGAGA...GCATTTGATAGTATTGACCTTCTCCCTACAGGGAATCAAATGAACACCAGAACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp TCATTCTCACACCAAGGCGGAGTCAAAGCACAAAACAGAGACAAAATGGCAGGACATGGGCATGATCGGTaGGTTTGGACTAGTTTTCTG +
Preference number: 5 (lower is better)
Translates to: SFSHQGGVKAQNRDKMAGHGHDR*VWTSFL
Trigger: CAGAAAACTAGTCCAAACCAACCGATCATGCCCATG...TCCTGCCATTTTGTCTCTGTTTTGTGCTTTGACTCCGCCTTGGTGTGAGAATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp TCAGTAAGAAACGGATTCGACAGAGTCACCTTGCACAAACAGGACACACTTCACAGAATGTTGACTCTGTaGGTCCATTGCAAGAACTGG +
Preference number: 5 (lower is better)
Translates to: SVRNGFDRVTLHKQDTLHRMLTL*VHCKNW
Trigger: CCAGTTCTTGCAATGGACCAACAGAGTCAACATTCT...GTGAAGTGTGTCCTGTTTGTGCAAGGTGACTCTGTCGAATCCGTTTCTTACTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp GGTTCTGGTGTTCATTTGATTCCCTGTAGGGAGAAGGTCAATACTATCAAATGCTGCAGATTTTCTCCATaGGTGATGTTGGGGGCAGTG +
Preference number: 5 (lower is better)
Translates to: GSGVHLIPCREKVNTIKCCRFSP*VMLGAV
Trigger: CACTGCCCCCAACATCACCAATGGAGAAAATCTGCA...GCATTTGATAGTATTGACCTTCTCCCTACAGGGAATCAAATGAACACCAGAACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp AAAATCAAATCTGCTGGAGCCCTCCTGGGGAACAGTCACCAAGGTGAGGACATTAATGATAACCGTGACTaGCAGATTTTCTCCATTGGT +
Preference number: 5 (lower is better)
Translates to: KIKSAGALLGNSHQGEDINDNRD*QIFSIG
Trigger: ACCAATGGAGAAAATCTGCAAGTCACGGTTATCATT...AATGTCCTCACCTTGGTGACTGTTCCCCAGGAGGGCTCCAGCAGATTTGATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp GGTTCTGGTGTTCATTTGATTCCCTGTAGGGAGAAGGTCAATACTATCAAATGCAATACTTTTGGATCTTaGCCTTCTGTGCCGTGCCTC +
Preference number: 5 (lower is better)
Translates to: GSGVHLIPCREKVNTIKCNTFGS*PSVPCL
Trigger: GAGGCACGGCACAGAAGGCAAAGATCCAAAAGTATT...GCATTTGATAGTATTGACCTTCTCCCTACAGGGAATCAAATGAACACCAGAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp TTCCCAGGCCTAAGTCTTTTCTCTGACTGTGAAGTCTCTGCCCCAAATCCTTTTTTCTGGAGCAAGGCCTaGAAATCATCATTTCTACCA +
Preference number: 5 (lower is better)
Translates to: FPGLSLFSDCEVSAPNPFFWSKA*KSSFLP
Trigger: TGGTAGAAATGATGATTTCAAGGCCTTGCTCCAGAA...AAAAGGATTTGGGGCAGAGACTTCACAGTCAGAGAAAAGACTTAGGCCTGGGAA
44% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp GGTTCTGGTGTTCATTTGATTCCCTGTAGGGAGAAGGTCAATACTATCAAATGCCCCAGTAGCTTTCTTTaGGACCTGTGTATCACAGTA +
Preference number: 5 (lower is better)
Translates to: GSGVHLIPCREKVNTIKCPSSFL*DLCITV
Trigger: TACTGTGATACACAGGTCCAAAAGAAAGCTACTGGG...GCATTTGATAGTATTGACCTTCTCCCTACAGGGAATCAAATGAACACCAGAACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS-3UTR CAA 90 bp TTAAGAGACCATTTTCCCCTTAAGTCTGAGAGAAGTGCTAGAAGACAGTTGGTGTTGAGTGAAATACTTTaGGATCTTTGCCTTCTGTGC +
Preference number: 5 (lower is better)
Translates to: LRDHFPLKSERSARRQLVLSEIL*DLCLLC
Trigger: GCACAGAAGGCAAAGATCCAAAAGTATTTCACTCAA...CACCAACTGTCTTCTAGCACTTCTCTCAGACTTAAGGGGAAAATGGTCTCTTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS GCA 72 bp GCCAGGTGGCTCACGTCGCGGAGCTCAGCCAGCGGCTaGGGAGGGTTGCGCGGGCACAGACGCTGGGGCACC +
Preference number: 6 (lower is better)
Translates to: ARWLTSRSSASG*GGLRGHRRWGT
Trigger: GGTGCCCCAGCGTCTGTGCCCGCGCAACCCTCCGCAGCCGCTGGCTGAGCTCCGCGACGTGAGCCACCTGGC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101339.8
ENSMUST00000124279.6
CDS CCA 72 bp TCTGCGAGCTGGCGGAGCAGACTGAGCGCGGCCAGGTaGCTCACGTCGCGGAGCTCAGCCAGCGGCTGCGGA +
Preference number: 6 (lower is better)
Translates to: SASWRSRLSAAR*LTSRSSASGCG
Trigger: TCCGCAGCCGCTGGCTGAGCTCCGCGACGTGAGCCACCTGGCCGCGCTCAGTCTGCTCCGCCAGCTCGCAGA
72% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101339.8
ENSMUST00000124279.6
CDS TCA 72 bp AGTGGCCGCAGAGGTCTGCGAGCTGGCGGAGCAGACTaGGCGCGGCCAGGTGGCTCACGTCGCGGAGCTCAG +
Preference number: 6 (lower is better)
Translates to: SGRRGLRAGGAD*ARPGGSRRGAQ
Trigger: CTGAGCTCCGCGACGTGAGCCACCTGGCCGCGCTCAGTCTGCTCCGCCAGCTCGCAGACCTCTGCGGCCACT
71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101339.8
ENSMUST00000124279.6
CDS CCA 72 bp AGCAGAGCCAGCGAGTGGCCGCAGAGGTCTGCGAGCTaGCGGAGCAGACTGAGCGCGGCCAGGTGGCTCACG +
Preference number: 6 (lower is better)
Translates to: SRASEWPQRSAS*RSRLSAARWLT
Trigger: CGTGAGCCACCTGGCCGCGCTCAGTCTGCTCCGCCAGCTCGCAGACCTCTGCGGCCACTCGCTGGCTCTGCT
71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101339.8
ENSMUST00000124279.6
CDS GCA 72 bp GCGCCTCGCGAAGCAGTTCCTCTACACTCGGGGGCCTaGCCGAGGAGAGGAACACGTTCACTGGCTGTCGCC +
Preference number: 6 (lower is better)
Translates to: APREAVPLHSGA*PRRGTRSLAVA
Trigger: GGCGACAGCCAGTGAACGTGTTCCTCTCCTCGGGCAGGCCCCCGAGTGTAGAGGAACTGCTTCGCGAGGCGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS TCA 72 bp GTACACCACTGCCATGCTCTCCATGCCGGGATGGTCTaGGGCACTGCGTGCCTGGTGAGCGTCTCCGGGCTC +
Preference number: 6 (lower is better)
Translates to: VHHCHALHAGMV*GTACLVSVSGL
Trigger: GAGCCCGGAGACGCTCACCAGGCACGCAGTGCCTCAGACCATCCCGGCATGGAGAGCATGGCAGTGGTGTAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101339.8
ENSMUST00000144753.2
CDS TCA 72 bp GCAGAGCGGGCCAGGCTGCCTGTGGGGCTGCTGCTGTaGCCTGTTGCTGAATGCATCCTGCTGCTTTGGCTC +
Preference number: 6 (lower is better)
Translates to: AERARLPVGLLL*PVAECILLLWL
Trigger: GAGCCAAAGCAGCAGGATGCATTCAGCAACAGGTCACAGCAGCAGCCCCACAGGCAGCCTGGCCCGCTCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144753.2
CDS TCA 72 bp TTCCCTGAACAACTTGTGGAGCTGAGTGGCCAGGCCTaGTGTCTGAGGTGGCAGAGCGGGCCAGGCTGCCTG +
Preference number: 6 (lower is better)
Translates to: FPEQLVELSGQA*CLRWQSGPGCL
Trigger: CAGGCAGCCTGGCCCGCTCTGCCACCTCAGACATCAGGCCTGGCCACTCAGCTCCACAAGTTGTTCAGGGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101339.8
ENSMUST00000144753.2
CDS GCA 72 bp CTGCTGCCCTGTGCTGGCTACATCAGCAAGCTCCCTTaGCCTCAGGATGCGAGTCCCGTTCACCCAGTGGCA +
Preference number: 6 (lower is better)
Translates to: LLPCAGYISKLP*PQDASPVHPVA
Trigger: TGCCACTGGGTGAACGGGACTCGCATCCTGAGGGCAAGGGAGCTTGCTGATGTAGCCAGCACAGGGCAGCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124279.6
CDS CCA 72 bp CTCCCCAGGGAGAGAGGGCGGCCTGTGGACCAAACTTaGAGGCCTTCGGGCCAATGGAGGTTTCTCGGCTAT +
Preference number: 6 (lower is better)
Translates to: LPRERGRPVDQT*RPSGQWRFLGY
Trigger: ATAGCCGAGAAACCTCCATTGGCCCGAAGGCCTCCAAGTTTGGTCCACAGGCCGCCCTCTCTCCCTGGGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 72 bp TCTGGAGGCCGATTCTTTCAGGCAGGGCTCTCACCTTaGGGCCCCCGTCTTCTACACTGGCCTGGGGAGGTT +
Preference number: 6 (lower is better)
Translates to: SGGRFFQAGLSP*GPRLLHWPGEV
Trigger: AACCTCCCCAGGCCAGTGTAGAAGACGGGGGCCCCAAGGTGAGAGCCCTGCCTGAAAGAATCGGCCTCCAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 72 bp TGGTCTTCAGCAGCTCGGCCGCTGAGGGGCGGGTCCTaGGAGTTGCCTTACTTCCCTTCTTCTGGAGCAAGG +
Preference number: 6 (lower is better)
Translates to: WSSAARPLRGGS*ELPYFPSSGAR
Trigger: CCTTGCTCCAGAAGAAGGGAAGTAAGGCAACTCCCAGGACCCGCCCCTCAGCGGCCGAGCTGCTGAAGACCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 72 bp ACTCCCCAGGGAGAGAGGGCGGCCTGTGGACCAAACTaGGAGGCCTTCGGGCCAATGGAGGTTTCTCGGCTA +
Preference number: 6 (lower is better)
Translates to: TPQGERAACGPN*EAFGPMEVSRL
Trigger: TAGCCGAGAAACCTCCATTGGCCCGAAGGCCTCCAAGTTTGGTCCACAGGCCGCCCTCTCTCCCTGGGGAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 72 bp ACTGCTGCCCTGTGCTGGCTACATCAGCAAGCTCCCTaGCCCTCAGGATGCGAGTCCCGTTCACCCAGTGGC +
Preference number: 6 (lower is better)
Translates to: TAALCWLHQQAP*PSGCESRSPSG
Trigger: GCCACTGGGTGAACGGGACTCGCATCCTGAGGGCAAGGGAGCTTGCTGATGTAGCCAGCACAGGGCAGCAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124279.6
CDS TCA 72 bp GCCCGAGGAGAGGAACACGTTCACTGGCTGTCGCCATaGCGACCTCGAGTGGGCAGTCGCTGTCGCATTTTC +
Preference number: 6 (lower is better)
Translates to: ARGEEHVHWLSP*RPRVGSRCRIF
Trigger: GAAAATGCGACAGCGACTGCCCACTCGAGGTCGTCATGGCGACAGCCAGTGAACGTGTTCCTCTCCTCGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS GCA 72 bp AACTGGGGACACTGTACACCACTGCCATGCTCTCCATaGCGGGATGGTCTGAGGCACTGCGTGCCTGGTGAG +
Preference number: 6 (lower is better)
Translates to: NWGHCTPLPCSP*RDGLRHCVPGE
Trigger: CTCACCAGGCACGCAGTGCCTCAGACCATCCCGGCATGGAGAGCATGGCAGTGGTGTACAGTGTCCCCAGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101339.8
ENSMUST00000144753.2
CDS GCA 72 bp TGCTGGCTACATCAGCAAGCTCCCTTGCCCTCAGGATaGGAGTCCCGTTCACCCAGTGGCAGGCACCTAGCA +
Preference number: 6 (lower is better)
Translates to: CWLHQQAPLPSG*ESRSPSGRHLA
Trigger: TGCTAGGTGCCTGCCACTGGGTGAACGGGACTCGCATCCTGAGGGCAAGGGAGCTTGCTGATGTAGCCAGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124279.6
CDS CCA 72 bp TCAGTCCAGTGGGCCTCCCAGGAGAGGCTACTTCCCTaGCTTCCACCTCAATGGAGAGCTGGGAGGGTGTTG +
Preference number: 6 (lower is better)
Translates to: SVQWASQERLLP*LPPQWRAGRVL
Trigger: CAACACCCTCCCAGCTCTCCATTGAGGTGGAAGCCAGGGAAGTAGCCTCTCCTGGGAGGCCCACTGGACTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 72 bp GGCTGGAGTAACCACTGGAAGGGGACATCAGTCCAGTaGGCCTCCCAGGAGAGGCTACTTCCCTGGCTTCCA +
Preference number: 6 (lower is better)
Translates to: GWSNHWKGTSVQ*ASQERLLPWLP
Trigger: TGGAAGCCAGGGAAGTAGCCTCTCCTGGGAGGCCCACTGGACTGATGTCCCCTTCCAGTGGTTACTCCAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 72 bp GTTAGTGGATACTCCCCAGGGAGAGAGGGCGGCCTGTaGACCAAACTTGGAGGCCTTCGGGCCAATGGAGGT +
Preference number: 6 (lower is better)
Translates to: VSGYSPGREGGL*TKLGGLRANGG
Trigger: ACCTCCATTGGCCCGAAGGCCTCCAAGTTTGGTCCACAGGCCGCCCTCTCTCCCTGGGGAGTATCCACTAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 72 bp CATCATTTCTACCAGCATCTAGGCAGGCACTGCTACTaGGCCCTGGGGCAGCAGCAGCCTCACCGGTGGGAG +
Preference number: 6 (lower is better)
Translates to: HHFYQHLGRHCY*ALGQQQPHRWE
Trigger: CTCCCACCGGTGAGGCTGCTGCTGCCCCAGGGCCAAGTAGCAGTGCCTGCCTAGATGCTGGTAGAAATGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 90 bp CACAGCTGGGTGACCTTGAGCATCTGGGTGAGGTGGGTGGTGCCCTaGGTGTTCCAAGGAGAGGCAAAGGCTCCTAGGCCTCTGGTCCTT +
Preference number: 6 (lower is better)
Translates to: HSWVTLSIWVRWVVP*VFQGEAKAPRPLVL
Trigger: AAGGACCAGAGGCCTAGGAGCCTTTGCCTCTCCTTGGAACACCAAGGGCACCACCCACCTCACCCAGATGCTCAAGGTCACCCAGCTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 90 bp AGGCTACTTCCCTGGCTTCCACCTCAATGGAGAGCTGGGAGGGTGTaGTCGCTCTGGAGGTGGAAGGGGAGGCCAGAGACTCTGAGCTTC +
Preference number: 6 (lower is better)
Translates to: RLLPWLPPQWRAGRV*SLWRWKGRPETLSF
Trigger: GAAGCTCAGAGTCTCTGGCCTCCCCTTCCACCTCCAGAGCGACAACACCCTCCCAGCTCTCCATTGAGGTGGAAGCCAGGGAAGTAGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS GCA 72 bp GTAGGCTCAGGGGCCCCATCAGAAGAGCGGAAGGTCTaGCCCAGAAGTCTGGCCTCCGAATACTGTTCCTCA +
Preference number: 6 (lower is better)
Translates to: VGSGAPSEERKV*PRSLASEYCSS
Trigger: TGAGGAACAGTATTCGGAGGCCAGACTTCTGGGGCAGACCTTCCGCTCTTCTGATGGGGCCCCTGAGCCTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 72 bp TCCCTTGCCCTCAGGATGCGAGTCCCGTTCACCCAGTaGCAGGCACCTAGCAATTCTTCATCATCCTCCGGG +
Preference number: 6 (lower is better)
Translates to: SLALRMRVPFTQ*QAPSNSSSSSG
Trigger: CCCGGAGGATGATGAAGAATTGCTAGGTGCCTGCCACTGGGTGAACGGGACTCGCATCCTGAGGGCAAGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124279.6
CDS CAA 72 bp GTGACCTTGAGCATCTGGGTGAGGTGGGTGGTGCCCTaGGTGTTCCAAGGAGAGGCAAAGGCTCCTAGGCCT +
Preference number: 6 (lower is better)
Translates to: VTLSIWVRWVVP*VFQGEAKAPRP
Trigger: AGGCCTAGGAGCCTTTGCCTCTCCTTGGAACACCAAGGGCACCACCCACCTCACCCAGATGCTCAAGGTCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 90 bp TTAGTGGATACTCCCCAGGGAGAGAGGGCGGCCTGTGGACCAAACTaGGAGGCCTTCGGGCCAATGGAGGTTTCTCGGCTATGGGAGGTT +
Preference number: 6 (lower is better)
Translates to: LVDTPQGERAACGPN*EAFGPMEVSRLWEV
Trigger: AACCTCCCATAGCCGAGAAACCTCCATTGGCCCGAAGGCCTCCAAGTTTGGTCCACAGGCCGCCCTCTCTCCCTGGGGAGTATCCACTAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 90 bp TCCTTTAGGATGGGTAGAGGGAAGGGGTCATTCCAGGCACTTTGCTaGTTGGCAGTAGACAGGCTCAGGCAGGCCTCAGGGGCCCTCACA +
Preference number: 6 (lower is better)
Translates to: SFRMGRGKGSFQALC*LAVDRLRQASGALT
Trigger: TGTGAGGGCCCCTGAGGCCTGCCTGAGCCTGTCTACTGCCAACAAGCAAAGTGCCTGGAATGACCCCTTCCCTCTACCCATCCTAAAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS TCA 72 bp CCAATTCGCCTTCTGGTGGGAGGGCTGGCTCATCTTTaGCGAGTGAGACACTTCGCATGGGTGGAGAGGGCT +
Preference number: 6 (lower is better)
Translates to: PIRLLVGGLAHL*RVRHFAWVERA
Trigger: AGCCCTCTCCACCCATGCGAAGTGTCTCACTCGTCAAAGATGAGCCAGCCCTCCCACCAGAAGGCGAATTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS TCA 72 bp GAGACTCTGAGCTTCCCTGAACTTGAGTGCACTCAATaGCCGTGGTGCCGGTGGCAGTGCTGGAGCTGGACA +
Preference number: 6 (lower is better)
Translates to: ETLSFPELECTQ*PWCRWQCWSWT
Trigger: TGTCCAGCTCCAGCACTGCCACCGGCACCACGGTCATTGAGTGCACTCAAGTTCAGGGAAGCTCAGAGTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS GCA 72 bp CTCACACCCTGGGTCGTGGTCTCATCCTCGCTCAGCTaGCGTTTTGCAGGCATCAGTACAAACTCCAGACGC +
Preference number: 6 (lower is better)
Translates to: LTPWVVVSSSLS*RFAGISTNSRR
Trigger: GCGTCTGGAGTTTGTACTGATGCCTGCAAAACGGCAGCTGAGCGAGGATGAGACCACGACCCAGGGTGTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS GCA 72 bp CCTTCTGTGCCGTGCCTCCTGCTCAGTGCTGAGGGCTaGAATGTTGTCAGTACTGTTACTGCCCTCGGAGCT +
Preference number: 6 (lower is better)
Translates to: PSVPCLLLSAEG*NVVSTVTALGA
Trigger: AGCTCCGAGGGCAGTAACAGTACTGACAACATTGCAGCCCTCAGCACTGAGCAGGAGGCACGGCACAGAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 72 bp AACACGTTCACTGGCTGTCGCCATGACGACCTCGAGTaGGCAGTCGCTGTCGCATTTTCCCGACCCGAGTTA +
Preference number: 6 (lower is better)
Translates to: NTFTGCRHDDLE*AVAVAFSRPEL
Trigger: TAACTCGGGTCGGGAAAATGCGACAGCGACTGCCCACTCGAGGTCGTCATGGCGACAGCCAGTGAACGTGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 72 bp TGCTACTTGGCCCTGGGGCAGCAGCAGCCTCACCGGTaGGAGAATCAGCTGTATTCTTCACTGGTGAATGGG +
Preference number: 6 (lower is better)
Translates to: CYLALGQQQPHR*ENQLYSSLVNG
Trigger: CCCATTCACCAGTGAAGAATACAGCTGATTCTCCCACCGGTGAGGCTGCTGCTGCCCCAGGGCCAAGTAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 72 bp ACCAATTCGCCTTCTGGTGGGAGGGCTGGCTCATCTTaGACGAGTGAGACACTTCGCATGGGTGGAGAGGGC +
Preference number: 6 (lower is better)
Translates to: TNSPSGGRAGSS*TSETLRMGGEG
Trigger: GCCCTCTCCACCCATGCGAAGTGTCTCACTCGTCAAAGATGAGCCAGCCCTCCCACCAGAAGGCGAATTGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 90 bp CTGCGTACTTCCTGGATCTTTGAGCATTGGCACAGCTGGGTGACCTaGAGCATCTGGGTGAGGTGGGTGGTGCCCTTGGTGTTCCAAGGA +
Preference number: 6 (lower is better)
Translates to: LRTSWIFEHWHSWVT*SIWVRWVVPLVFQG
Trigger: TCCTTGGAACACCAAGGGCACCACCCACCTCACCCAGATGCTCAAGGTCACCCAGCTGTGCCAATGCTCAAAGATCCAGGAAGTACGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS TCA 72 bp TCTTCACTGGTGAATGGGAGCTGGGTTTGCTTCCCGTaGAGCCCTCCCCAGTCTCTTTCCAGCCCAGTAGCT +
Preference number: 6 (lower is better)
Translates to: SSLVNGSWVCFP*SPPQSLSSPVA
Trigger: AGCTACTGGGCTGGAAAGAGACTGGGGAGGGCTTCACGGGAAGCAAACCCAGCTCCCATTCACCAGTGAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 72 bp TGGAGCAGGGCTGAAGCCAGAGCCTCTCCTTTAGGATaGGTAGAGGGAAGGGGTCATTCCAGGCACTTTGCT +
Preference number: 6 (lower is better)
Translates to: WSRAEARASPLG*VEGRGHSRHFA
Trigger: AGCAAAGTGCCTGGAATGACCCCTTCCCTCTACCCATCCTAAAGGAGAGGCTCTGGCTTCAGCCCTGCTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 72 bp GTATCTGTCTTCGTAGAGTGGGGTGCTCAGAGTAGCTaGGTAGCCCAGTGCATCCTGCTGGGTTATCACGGG +
Preference number: 6 (lower is better)
Translates to: VSVFVEWGAQSS*VAQCILLGYHG
Trigger: CCCGTGATAACCCAGCAGGATGCACTGGGCTACCCAGCTACTCTGAGCACCCCACTCTACGAAGACAGATAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 72 bp TTTGAGCATTGGCACAGCTGGGTGACCTTGAGCATCTaGGTGAGGTGGGTGGTGCCCTTGGTGTTCCAAGGA +
Preference number: 6 (lower is better)
Translates to: FEHWHSWVTLSI*VRWVVPLVFQG
Trigger: TCCTTGGAACACCAAGGGCACCACCCACCTCACCCAGATGCTCAAGGTCACCCAGCTGTGCCAATGCTCAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 72 bp CTGCGTACTTCCTGGATCTTTGAGCATTGGCACAGCTaGGTGACCTTGAGCATCTGGGTGAGGTGGGTGGTG +
Preference number: 6 (lower is better)
Translates to: LRTSWIFEHWHS*VTLSIWVRWVV
Trigger: CACCACCCACCTCACCCAGATGCTCAAGGTCACCCAGCTGTGCCAATGCTCAAAGATCCAGGAAGTACGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 72 bp GGACGTACTCTGACACTAGCACTTGGAGGAGGTAAGTaGCCCAGGGTCAAGGACATGGAGACAGTGGGTGTG +
Preference number: 6 (lower is better)
Translates to: GRTLTLALGGGK*PRVKDMETVGV
Trigger: CACACCCACTGTCTCCATGTCCTTGACCCTGGGCCACTTACCTCCTCCAAGTGCTAGTGTCAGAGTACGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 72 bp CCGGTGGGAGAATCAGCTGTATTCTTCACTGGTGAATaGGAGCTGGGTTTGCTTCCCGTGAAGCCCTCCCCA +
Preference number: 6 (lower is better)
Translates to: PVGESAVFFTGE*ELGLLPVKPSP
Trigger: TGGGGAGGGCTTCACGGGAAGCAAACCCAGCTCCCATTCACCAGTGAAGAATACAGCTGATTCTCCCACCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 90 bp GGGCCTGTTTCCAGCCTTGAGGTACCACGGGCAAGAAGGCCAATCTaGGGAGGTCTTTCTGGTATCTGTCTTCGTAGAGTGGGGTGCTCA +
Preference number: 6 (lower is better)
Translates to: GPVSSLEVPRARRPI*GGLSGICLRRVGCS
Trigger: TGAGCACCCCACTCTACGAAGACAGATACCAGAAAGACCTCCCAAGATTGGCCTTCTTGCCCGTGGTACCTCAAGGCTGGAAACAGGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 90 bp GTGGGAGAATCAGCTGTATTCTTCACTGGTGAATGGGAGCTGGGTTaGCTTCCCGTGAAGCCCTCCCCAGTCTCTTTCCAGCCCAGTAGC +
Preference number: 6 (lower is better)
Translates to: VGESAVFFTGEWELG*LPVKPSPVSFQPSS
Trigger: GCTACTGGGCTGGAAAGAGACTGGGGAGGGCTTCACGGGAAGCAAACCCAGCTCCCATTCACCAGTGAAGAATACAGCTGATTCTCCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS TCA 72 bp GCCTTCTGGTGGGAGGGCTGGCTCATCTTTGACGAGTaGGACACTTCGCATGGGTGGAGAGGGCTTCTTTTT +
Preference number: 6 (lower is better)
Translates to: AFWWEGWLIFDE*DTSHGWRGLLF
Trigger: AAAAAGAAGCCCTCTCCACCCATGCGAAGTGTCTCACTCGTCAAAGATGAGCCAGCCCTCCCACCAGAAGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS TCA 72 bp GTCAGTGTGAAGAGGCGAAGTCACCCCTTTACCAGGTaGCTTCTGGTCATCACCAGTGGAGGGACACTTGCC +
Preference number: 6 (lower is better)
Translates to: VSVKRRSHPFTR*LLVITSGGTLA
Trigger: GGCAAGTGTCCCTCCACTGGTGATGACCAGAAGTCACCTGGTAAAGGGGTGACTTCGCCTCTTCACACTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS GCA 72 bp TCATATTCTTCTTGCAACAGGCTCTGGAGATTGAGCTaGGCCTCGCGAAGCAGTTCCTCTACACTCGGGGGC +
Preference number: 6 (lower is better)
Translates to: SYSSCNRLWRLS*ASRSSSSTLGG
Trigger: GCCCCCGAGTGTAGAGGAACTGCTTCGCGAGGCGCAGCTCAATCTCCAGAGCCTGTTGCAAGAAGAATATGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS GCA 72 bp TGGTATCAGAGTGATGGCGGCTCACCTTGGTTTTGCTaGGGATGGAGATACTCATCCCCGACAGATCCAGGG +
Preference number: 6 (lower is better)
Translates to: WYQSDGGSPWFC*GWRYSSPTDPG
Trigger: CCCTGGATCTGTCGGGGATGAGTATCTCCATCCGCAGCAAAACCAAGGTGAGCCGCCATCACTCTGATACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 72 bp CGGCCTGTGGACCAAACTTGGAGGCCTTCGGGCCAATaGAGGTTTCTCGGCTATGGGAGGTTTCACTTTTCT +
Preference number: 6 (lower is better)
Translates to: RPVDQTWRPSGQ*RFLGYGRFHFS
Trigger: AGAAAAGTGAAACCTCCCATAGCCGAGAAACCTCCATTGGCCCGAAGGCCTCCAAGTTTGGTCCACAGGCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 90 bp TTGGGCAGTACCAATTCGCCTTCTGGTGGGAGGGCTGGCTCATCTTaGACGAGTGAGACACTTCGCATGGGTGGAGAGGGCTTCTTTTTG +
Preference number: 6 (lower is better)
Translates to: LGSTNSPSGGRAGSS*TSETLRMGGEGFFL
Trigger: CAAAAAGAAGCCCTCTCCACCCATGCGAAGTGTCTCACTCGTCAAAGATGAGCCAGCCCTCCCACCAGAAGGCGAATTGGTACTGCCCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS TCA 72 bp ATCTTTGCCTTCTGTGCCGTGCCTCCTGCTCAGTGCTaGGGGCTGCAATGTTGTCAGTACTGTTACTGCCCT +
Preference number: 6 (lower is better)
Translates to: IFAFCAVPPAQC*GLQCCQYCYCP
Trigger: AGGGCAGTAACAGTACTGACAACATTGCAGCCCTCAGCACTGAGCAGGAGGCACGGCACAGAAGGCAAAGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 72 bp CCAGCCTTGAGGTACCACGGGCAAGAAGGCCAATCTTaGGAGGTCTTTCTGGTATCTGTCTTCGTAGAGTGG +
Preference number: 6 (lower is better)
Translates to: PALRYHGQEGQS*EVFLVSVFVEW
Trigger: CCACTCTACGAAGACAGATACCAGAAAGACCTCCCAAGATTGGCCTTCTTGCCCGTGGTACCTCAAGGCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 72 bp GTGAGAGAACTGCGTACTTCCTGGATCTTTGAGCATTaGCACAGCTGGGTGACCTTGAGCATCTGGGTGAGG +
Preference number: 6 (lower is better)
Translates to: VRELRTSWIFEH*HSWVTLSIWVR
Trigger: CCTCACCCAGATGCTCAAGGTCACCCAGCTGTGCCAATGCTCAAAGATCCAGGAAGTACGCAGTTCTCTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 72 bp GTTGCTGTGTTCCTGAGAAGAAAGCACCAGAGGAACTaGCAAGAGGTGAGAGGACAAGGCTGGAGGATGCTG +
Preference number: 6 (lower is better)
Translates to: VAVFLRRKHQRN*QEVRGQGWRML
Trigger: CAGCATCCTCCAGCCTTGTCCTCTCACCTCTTGCCAGTTCCTCTGGTGCTTTCTTCTCAGGAACACAGCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 72 bp CTTCAGCACTCGGTTCCACTGACCTCCCTGGAGAGATaGCCTCTTTTTCTGTGTCAGTGTGAAGAGGCGAAG +
Preference number: 6 (lower is better)
Translates to: LQHSVPLTSLER*PLFLCQCEEAK
Trigger: CTTCGCCTCTTCACACTGACACAGAAAAAGAGGCCATCTCTCCAGGGAGGTCAGTGGAACCGAGTGCTGAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 72 bp AATCCAATAATGGTCCGCCTCCGCCTCAGGGTGGACTaGGGGTTCACGGCTGTCTCTGTGTTAAACAACGAG +
Preference number: 6 (lower is better)
Translates to: NPIMVRLRLRVD*GFTAVSVLNNE
Trigger: CTCGTTGTTTAACACAGAGACAGCCGTGAACCCCAAGTCCACCCTGAGGCGGAGGCGGACCATTATTGGATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101339.8
ENSMUST00000124279.6
CDS CAA 72 bp CTGCAATGTTGTCAGTACTGTTACTGCCCTCGGAGCTaGTACTGGCATAAGGCAGGATGCGGGTCTCACTGG +
Preference number: 6 (lower is better)
Translates to: LQCCQYCYCPRS*YWHKAGCGSHW
Trigger: CCAGTGAGACCCGCATCCTGCCTTATGCCAGTACAAGCTCCGAGGGCAGTAACAGTACTGACAACATTGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 72 bp TCAGCTGTATTCTTCACTGGTGAATGGGAGCTGGGTTaGCTTCCCGTGAAGCCCTCCCCAGTCTCTTTCCAG +
Preference number: 6 (lower is better)
Translates to: SAVFFTGEWELG*LPVKPSPVSFQ
Trigger: CTGGAAAGAGACTGGGGAGGGCTTCACGGGAAGCAAACCCAGCTCCCATTCACCAGTGAAGAATACAGCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS TCA 72 bp GATTGCCCTGGCTGCTGGCACTTGGGGTCATGTATGTaGAAGCATCTCCCTTCCAGGAAGTGGAGAATGTTG +
Preference number: 6 (lower is better)
Translates to: DCPGCWHLGSCM*KHLPSRKWRML
Trigger: CAACATTCTCCACTTCCTGGAAGGGAGATGCTTTCACATACATGACCCCAAGTGCCAGCAGCCAGGGCAATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101339.8
ENSMUST00000144753.2
CDS TCA 72 bp ACCAGTGGTGAGAGAACTGCGTACTTCCTGGATCTTTaGGCATTGGCACAGCTGGGTGACCTTGAGCATCTG +
Preference number: 6 (lower is better)
Translates to: TSGERTAYFLDL*ALAQLGDLEHL
Trigger: CAGATGCTCAAGGTCACCCAGCTGTGCCAATGCTCAAAGATCCAGGAAGTACGCAGTTCTCTCACCACTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS TCA 72 bp CTGACTGACCTCAGGCGAACAGAACGGAGGTCAGACTaGGTAACCATGGGCATGATCGGTTGGTTTGGACTA +
Preference number: 6 (lower is better)
Translates to: LTDLRRTERRSD*VTMGMIGWFGL
Trigger: TAGTCCAAACCAACCGATCATGCCCATGGTTACTCAGTCTGACCTCCGTTCTGTTCGCCTGAGGTCAGTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS TCA 72 bp ACTCTCAATGTCGTCTTCTGGCTCAGACTTGCTGACTaGCCTCAGGCGAACAGAACGGAGGTCAGACTGAGT +
Preference number: 6 (lower is better)
Translates to: TLNVVFWLRLAD*PQANRTEVRLS
Trigger: ACTCAGTCTGACCTCCGTTCTGTTCGCCTGAGGTCAGTCAGCAAGTCTGAGCCAGAAGACGACATTGAGAGT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS TCA 72 bp CTCCCTGGAGAGATGGCCTCTTTTTCTGTGTCAGTGTaGAGAGGCGAAGTCACCCCTTTACCAGGTGACTTC +
Preference number: 6 (lower is better)
Translates to: LPGEMASFSVSV*RGEVTPLPGDF
Trigger: GAAGTCACCTGGTAAAGGGGTGACTTCGCCTCTTCACACTGACACAGAAAAAGAGGCCATCTCTCCAGGGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS GCA 72 bp GTCGAAAACTTGCATGTCTATCAAACTGCTGCCCTGTaGTGGCTACATCAGCAAGCTCCCTTGCCCTCAGGA +
Preference number: 6 (lower is better)
Translates to: VENLHVYQTAAL*WLHQQAPLPSG
Trigger: TCCTGAGGGCAAGGGAGCTTGCTGATGTAGCCAGCACAGGGCAGCAGTTTGATAGACATGCAAGTTTTCGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124279.6
CDS CCA 72 bp CCCCATCAGAAGAGCGGAAGGTCTGCCCCAGAAGTCTaGCCTCCGAATACTGTTCCTCATATTCTTCTTGCA +
Preference number: 6 (lower is better)
Translates to: PHQKSGRSAPEV*PPNTVPHILLA
Trigger: TGCAAGAAGAATATGAGGAACAGTATTCGGAGGCCAGACTTCTGGGGCAGACCTTCCGCTCTTCTGATGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 72 bp TGTTGTCAGTACTGTTACTGCCCTCGGAGCTTGTACTaGCATAAGGCAGGATGCGGGTCTCACTGGTCTTCT +
Preference number: 6 (lower is better)
Translates to: CCQYCYCPRSLY*HKAGCGSHWSS
Trigger: AGAAGACCAGTGAGACCCGCATCCTGCCTTATGCCAGTACAAGCTCCGAGGGCAGTAACAGTACTGACAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 72 bp GAAAACTTGCATGTCTATCAAACTGCTGCCCTGTGCTaGCTACATCAGCAAGCTCCCTTGCCCTCAGGATGC +
Preference number: 6 (lower is better)
Translates to: ENLHVYQTAALC*LHQQAPLPSGC
Trigger: GCATCCTGAGGGCAAGGGAGCTTGCTGATGTAGCCAGCACAGGGCAGCAGTTTGATAGACATGCAAGTTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124279.6
CDS CAA 72 bp TCCAGCCTTGAGGTACCACGGGCAAGAAGGCCAATCTaGGGAGGTCTTTCTGGTATCTGTCTTCGTAGAGTG +
Preference number: 6 (lower is better)
Translates to: SSLEVPRARRPI*GGLSGICLRRV
Trigger: CACTCTACGAAGACAGATACCAGAAAGACCTCCCAAGATTGGCCTTCTTGCCCGTGGTACCTCAAGGCTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 90 bp ATGGGTGGAGAGGGCTTCTTTTTGGCCTTCTTGAGTGAAATACTTTaGGATCTTTGCCTTCTGTGCCGTGCCTCCTGCTCAGTGCTGAGG +
Preference number: 6 (lower is better)
Translates to: MGGEGFFLAFLSEIL*DLCLLCRASCSVLR
Trigger: CCTCAGCACTGAGCAGGAGGCACGGCACAGAAGGCAAAGATCCAAAAGTATTTCACTCAAGAAGGCCAAAAAGAAGCCCTCTCCACCCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS GCA 72 bp ATACTTTTGGATCTTTGCCTTCTGTGCCGTGCCTCCTaGTCAGTGCTGAGGGCTGCAATGTTGTCAGTACTG +
Preference number: 6 (lower is better)
Translates to: ILLDLCLLCRAS*SVLRAAMLSVL
Trigger: CAGTACTGACAACATTGCAGCCCTCAGCACTGAGCAGGAGGCACGGCACAGAAGGCAAAGATCCAAAAGTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS GCA 72 bp AATTGGTATCAGAGTGATGGCGGCTCACCTTGGTTTTaGTGCGGATGGAGATACTCATCCCCGACAGATCCA +
Preference number: 6 (lower is better)
Translates to: NWYQSDGGSPWF*CGWRYSSPTDP
Trigger: TGGATCTGTCGGGGATGAGTATCTCCATCCGCAGCAAAACCAAGGTGAGCCGCCATCACTCTGATACCAATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS GCA 72 bp AACGAGTGTCGAAAACTTGCATGTCTATCAAACTGCTaGCCTGTGCTGGCTACATCAGCAAGCTCCCTTGCC +
Preference number: 6 (lower is better)
Translates to: NECRKLACLSNC*PVLATSASSLA
Trigger: GGCAAGGGAGCTTGCTGATGTAGCCAGCACAGGGCAGCAGTTTGATAGACATGCAAGTTTTCGACACTCGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124279.6
CDS CCA 72 bp TGCATGTCTATCAAACTGCTGCCCAGAGATGTTGATTaGCACAAGGTCAGACTGTGTGGAGCAGGGCTGAAG +
Preference number: 6 (lower is better)
Translates to: CMSIKLLPRDVD*HKVRLCGAGLK
Trigger: CTTCAGCCCTGCTCCACACAGTCTGACCTTGTGCCAATCAACATCTCTGGGCAGCAGTTTGATAGACATGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 72 bp TGTTCCTCATATTCTTCTTGCAACAGGCTCTGGAGATaGAGCTGCGCCTCGCGAAGCAGTTCCTCTACACTC +
Preference number: 6 (lower is better)
Translates to: CSSYSSCNRLWR*SCASRSSSSTL
Trigger: GAGTGTAGAGGAACTGCTTCGCGAGGCGCAGCTCAATCTCCAGAGCCTGTTGCAAGAAGAATATGAGGAACA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 72 bp GGATGGAGATACTCATCCCCGACAGATCCAGGGTGGTaGAAGAGGTCAGTGGTAGGTCAAATGATAACCGTG +
Preference number: 6 (lower is better)
Translates to: GWRYSSPTDPGW*KRSVVGQMITV
Trigger: CACGGTTATCATTTGACCTACCACTGACCTCTTCAACCACCCTGGATCTGTCGGGGATGAGTATCTCCATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 72 bp ACGGAGGTCAGACTGAGTAACCATGGGCATGATCGGTaGGTTTGGACTAGTTTTCTGTGCCAGTTTGACCCC +
Preference number: 6 (lower is better)
Translates to: TEVRLSNHGHDR*VWTSFLCQFDP
Trigger: GGGGTCAAACTGGCACAGAAAACTAGTCCAAACCAACCGATCATGCCCATGGTTACTCAGTCTGACCTCCGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 90 bp AAGTTAGAGAATCCAATAATGGTCCGCCTCCGCCTCAGGGTGGACTaGGGGTTCACGGCTGTCTCTGTGTTAAACAACGAGTGTCGAAAA +
Preference number: 6 (lower is better)
Translates to: KLENPIMVRLRLRVD*GFTAVSVLNNECRK
Trigger: TTTTCGACACTCGTTGTTTAACACAGAGACAGCCGTGAACCCCAAGTCCACCCTGAGGCGGAGGCGGACCATTATTGGATTCTCTAACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101339.8
ENSMUST00000124279.6
CDS CAA 90 bp AGTGAGACACTTCGCATGGGTGGAGAGGGCTTCTTTTTGGCCTTCTaGAGTGAAATACTTTTGGATCTTTGCCTTCTGTGCCGTGCCTCC +
Preference number: 6 (lower is better)
Translates to: SETLRMGGEGFFLAF*SEILLDLCLLCRAS
Trigger: GGAGGCACGGCACAGAAGGCAAAGATCCAAAAGTATTTCACTCAAGAAGGCCAAAAAGAAGCCCTCTCCACCCATGCGAAGTGTCTCACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 90 bp TTTTGCTGCGGATGGAGATACTCATCCCCGACAGATCCAGGGTGGTaGAAGAGGTCAGTGGTAGGTCAAATGATAACCGTGACTTGCAGA +
Preference number: 6 (lower is better)
Translates to: FCCGWRYSSPTDPGW*KRSVVGQMITVTCR
Trigger: TCTGCAAGTCACGGTTATCATTTGACCTACCACTGACCTCTTCAACCACCCTGGATCTGTCGGGGATGAGTATCTCCATCCGCAGCAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS GCA 72 bp TTCTTGAGTGAAATACTTTTGGATCTTTGCCTTCTGTaGCGTGCCTCCTGCTCAGTGCTGAGGGCTGCAATG +
Preference number: 6 (lower is better)
Translates to: FLSEILLDLCLL*RASCSVLRAAM
Trigger: CATTGCAGCCCTCAGCACTGAGCAGGAGGCACGGCACAGAAGGCAAAGATCCAAAAGTATTTCACTCAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CCA 72 bp ATTTTCACTGACTTGATTGCCCTGGCTGCTGGCACTTaGGGTCATGTATGTGAAAGCATCTCCCTTCCAGGA +
Preference number: 6 (lower is better)
Translates to: IFTDLIALAAGT*GHVCESISLPG
Trigger: TCCTGGAAGGGAGATGCTTTCACATACATGACCCCAAGTGCCAGCAGCCAGGGCAATCAAGTCAGTGAAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101339.8
ENSMUST00000144753.2
CDS CCA 72 bp AGTAAGATACCAGTGGTGAGAGAACTGCGTACTTCCTaGATCTTTGAGCATTGGCACAGCTGGGTGACCTTG +
Preference number: 6 (lower is better)
Translates to: SKIPVVRELRTS*IFEHWHSWVTL
Trigger: CAAGGTCACCCAGCTGTGCCAATGCTCAAAGATCCAGGAAGTACGCAGTTCTCTCACCACTGGTATCTTACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS TCA 72 bp CGGCTATGGGAGGTTTCACTTTTCTCTCTGGCATGGTaGAGACTTCCTCTGCTCCAGGTTCCTCTATGTAAT +
Preference number: 6 (lower is better)
Translates to: RLWEVSLFSLAW*RLPLLQVPLCN
Trigger: ATTACATAGAGGAACCTGGAGCAGAGGAAGTCTTCACCATGCCAGAGAGAAAAGTGAAACCTCCCATAGCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS GCA 72 bp AACAACGAGTGTCGAAAACTTGCATGTCTATCAAACTaGTGCCCTGTGCTGGCTACATCAGCAAGCTCCCTT +
Preference number: 6 (lower is better)
Translates to: NNECRKLACLSN*CPVLATSASSL
Trigger: AAGGGAGCTTGCTGATGTAGCCAGCACAGGGCAGCAGTTTGATAGACATGCAAGTTTTCGACACTCGTTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124279.6
CDS CCA 72 bp GAAGACTTCCTCTGCTCCAGGTTCCTCTATGTAATCTaGACTCTCAATGTCGTCTTCTGGCTCAGACTTGCT +
Preference number: 6 (lower is better)
Translates to: EDFLCSRFLYVI*TLNVVFWLRLA
Trigger: AGCAAGTCTGAGCCAGAAGACGACATTGAGAGTCCAGATTACATAGAGGAACCTGGAGCAGAGGAAGTCTTC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 90 bp GGTCAAATGATAACCGTGACTTGCAGATTTTCTCCATTGGTGATGTaGGGGGCAGTGATGACTTCCTTTCTGGTACCACTGGACGTACTC +
Preference number: 6 (lower is better)
Translates to: GQMITVTCRFSPLVM*GAVMTSFLVPLDVL
Trigger: GAGTACGTCCAGTGGTACCAGAAAGGAAGTCATCACTGCCCCCAACATCACCAATGGAGAAAATCTGCAAGTCACGGTTATCATTTGACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 90 bp AGGGTGGTTGAAGAGGTCAGTGGTAGGTCAAATGATAACCGTGACTaGCAGATTTTCTCCATTGGTGATGTTGGGGGCAGTGATGACTTC +
Preference number: 6 (lower is better)
Translates to: RVVEEVSGRSNDNRD*QIFSIGDVGGSDDF
Trigger: GAAGTCATCACTGCCCCCAACATCACCAATGGAGAAAATCTGCAAGTCACGGTTATCATTTGACCTACCACTGACCTCTTCAACCACCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 90 bp TCTTTGACGAGTGAGACACTTCGCATGGGTGGAGAGGGCTTCTTTTaGGCCTTCTTGAGTGAAATACTTTTGGATCTTTGCCTTCTGTGC +
Preference number: 6 (lower is better)
Translates to: SLTSETLRMGGEGFF*AFLSEILLDLCLLC
Trigger: GCACAGAAGGCAAAGATCCAAAAGTATTTCACTCAAGAAGGCCAAAAAGAAGCCCTCTCCACCCATGCGAAGTGTCTCACTCGTCAAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 90 bp TCAGTGGTAGGTCAAATGATAACCGTGACTTGCAGATTTTCTCCATaGGTGATGTTGGGGGCAGTGATGACTTCCTTTCTGGTACCACTG +
Preference number: 6 (lower is better)
Translates to: SVVGQMITVTCRFSP*VMLGAVMTSFLVPL
Trigger: CAGTGGTACCAGAAAGGAAGTCATCACTGCCCCCAACATCACCAATGGAGAAAATCTGCAAGTCACGGTTATCATTTGACCTACCACTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS TCA 72 bp GTGTCACCAGACTTCCAGTCAGTAAGATACCAGTGGTaGGAGAACTGCGTACTTCCTGGATCTTTGAGCATT +
Preference number: 6 (lower is better)
Translates to: VSPDFQSVRYQW*ENCVLPGSLSI
Trigger: AATGCTCAAAGATCCAGGAAGTACGCAGTTCTCTCACCACTGGTATCTTACTGACTGGAAGTCTGGTGACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS TCA 72 bp TTAGGTACTGGGGTTGTCAGTGGGTTCGTAGTCTTTTaGGAACTGTGCAATAATCCTTCGAGCCAGAGGGTT +
Preference number: 6 (lower is better)
Translates to: LGTGVVSGFVVF*ELCNNPSSQRV
Trigger: AACCCTCTGGCTCGAAGGATTATTGCACAGTTCTCAAAAGACTACGAACCCACTGACAACCCCAGTACCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS GCA 72 bp AAGAGGTCAGTGGTAGGTCAAATGATAACCGTGACTTaGAGATTTTCTCCATTGGTGATGTTGGGGGCAGTG +
Preference number: 6 (lower is better)
Translates to: KRSVVGQMITVT*RFSPLVMLGAV
Trigger: CACTGCCCCCAACATCACCAATGGAGAAAATCTGCAAGTCACGGTTATCATTTGACCTACCACTGACCTCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 72 bp CTTCGCATGGGTGGAGAGGGCTTCTTTTTGGCCTTCTaGAGTGAAATACTTTTGGATCTTTGCCTTCTGTGC +
Preference number: 6 (lower is better)
Translates to: LRMGGEGFFLAF*SEILLDLCLLC
Trigger: GCACAGAAGGCAAAGATCCAAAAGTATTTCACTCAAGAAGGCCAAAAAGAAGCCCTCTCCACCCATGCGAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 72 bp GAAGAGGTCAGTGGTAGGTCAAATGATAACCGTGACTaGCAGATTTTCTCCATTGGTGATGTTGGGGGCAGT +
Preference number: 6 (lower is better)
Translates to: EEVSGRSNDNRD*QIFSIGDVGGS
Trigger: ACTGCCCCCAACATCACCAATGGAGAAAATCTGCAAGTCACGGTTATCATTTGACCTACCACTGACCTCTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS TCA 72 bp CCTCCTCCTCTGCAATCCATTCGGCTGTTTTATCACTaGTTAAACTTTTCTCTTCAGCACTCGGTTCCACTG +
Preference number: 6 (lower is better)
Translates to: PPPLQSIRLFYH*LNFSLQHSVPL
Trigger: CAGTGGAACCGAGTGCTGAAGAGAAAAGTTTAATCAGTGATAAAACAGCCGAATGGATTGCAGAGGAGGAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 72 bp AGTGAGACACTTCGCATGGGTGGAGAGGGCTTCTTTTaGGCCTTCTTGAGTGAAATACTTTTGGATCTTTGC +
Preference number: 6 (lower is better)
Translates to: SETLRMGGEGFF*AFLSEILLDLC
Trigger: GCAAAGATCCAAAAGTATTTCACTCAAGAAGGCCAAAAAGAAGCCCTCTCCACCCATGCGAAGTGTCTCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 72 bp GGTCAAATGATAACCGTGACTTGCAGATTTTCTCCATaGGTGATGTTGGGGGCAGTGATGACTTCCTTTCTG +
Preference number: 6 (lower is better)
Translates to: GQMITVTCRFSP*VMLGAVMTSFL
Trigger: CAGAAAGGAAGTCATCACTGCCCCCAACATCACCAATGGAGAAAATCTGCAAGTCACGGTTATCATTTGACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS GCA 72 bp GGCTGTCTCTGTGTTAAACAACGAGTGTCGAAAACTTaGATGTCTATCAAACTGCTGCCCAGAGATGTTGAT +
Preference number: 6 (lower is better)
Translates to: GCLCVKQRVSKT*MSIKLLPRDVD
Trigger: ATCAACATCTCTGGGCAGCAGTTTGATAGACATGCAAGTTTTCGACACTCGTTGTTTAACACAGAGACAGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8
CDS CAA 72 bp CCCTCCCCAGTCTCTTTCCAGCCCAGTAGCTTTCTTTaGGACCTGTGTATCACAGTAAATAAATCTTCAGTT +
Preference number: 6 (lower is better)
Translates to: PSPVSFQPSSFL*DLCITVNKSSV
Trigger: AACTGAAGATTTATTTACTGTGATACACAGGTCCAAAAGAAAGCTACTGGGCTGGAAAGAGACTGGGGAGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000101339.8