RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NHSL1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039835

Ensembl transcript IDs: ENSMUST00000037341.14, ENSMUST00000100054.4, ENSMUST00000162891.8, ENSMUST00000207038.2

Found 495 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGTCAATGGCCACTGCCAGCAGCTTTAGAAGGTCAGTGTAGCCACTaGGAGACTAAGGTAGCGTGCGCTTCGGCTGGATACACGGAACCT +
Preference number: 1 (lower is better)
Translates to: CQWPLPAALEGQCSH*ETKVACASAGYTEP
Trigger: AGGTTCCGTGTATCCAGCCGAAGCGCACGCTACCTTAGTCTCCCAGTGGCTACACTGACCTTCTAAAGCTGCTGGCAGTGGCCATTGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR TCA 90 bp TTTCAGAAGTTGAAGCTTCTACTTGCTTTTAAGCCACACGGCGAGTaGGTCCTAAGAGACCCGAAAGGCCGAGACCTCCCCAACACCAAT +
Preference number: 1 (lower is better)
Translates to: FQKLKLLLAFKPHGE*VLRDPKGRDLPNTN
Trigger: ATTGGTGTTGGGGAGGTCTCGGCCTTTCGGGTCTCTTAGGACTCACTCGCCGTGTGGCTTAAAAGCAAGTAGAAGCTTCAACTTCTGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR TCA 90 bp ACGGTTGTACACTCTAATCCCGGTTCTAAAGCACATTTGCAATTCTaGTGGGAGGAGCCTCGAAGGGACTCAGCAACTCAACTCATAAAC +
Preference number: 1 (lower is better)
Translates to: TVVHSNPGSKAHLQF*WEEPRRDSATQLIN
Trigger: GTTTATGAGTTGAGTTGCTGAGTCCCTTCGAGGCTCCTCCCATCAGAATTGCAAATGTGCTTTAGAACCGGGATTAGAGTGTACAACCGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR CCA 90 bp GAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTaGATGCTTTGGCTTGTGTGGCTTGACTTCCAGACACTGTCACAC +
Preference number: 1 (lower is better)
Translates to: EMYLKWLSKVLWKKS*MLWLVWLDFQTLSH
Trigger: GTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR CCA 90 bp CTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTaGCTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAAT +
Preference number: 1 (lower is better)
Translates to: LKWLSKVLWKKSWML*LVWLDFQTLSHIVN
Trigger: ATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR CCA 90 bp ATTCTCTCCTCAGAGATGTATCTGAAATGGCTATCAAAGGTTCTGTaGAAGAAGTCTTGGATGCTTTGGCTTGTGTGGCTTGACTTCCAG +
Preference number: 1 (lower is better)
Translates to: ILSSEMYLKWLSKVL*KKSWMLWLVWLDFQ
Trigger: CTGGAAGTCAAGCCACACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTCTGAGGAGAGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR TCA 90 bp GTGAGGCGTGCTTTGTTTGCTAGATTCTCTCCTCAGAGATGTATCTaGAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTT +
Preference number: 1 (lower is better)
Translates to: VRRALFARFSPQRCI*NGYQRFCGRSLGCF
Trigger: AAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTCTGAGGAGAGAATCTAGCAAACAAAGCACGCCTCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR TCA 90 bp ACTTATCACCCTGGTCTAGTGGACTCCATTACCCTACCTGAACTCTaGCCTTTTCTCCTATTTCTATACGTAACGTTAGTGTGTGTATTT +
Preference number: 1 (lower is better)
Translates to: TYHPGLVDSITLPEL*PFLLFLYVTLVCVF
Trigger: AAATACACACACTAACGTTACGTATAGAAATAGGAGAAAAGGTCAGAGTTCAGGTAGGGTAATGGAGTCCACTAGACCAGGGTGATAAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR-3UTR TCA 90 bp TTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTAGAGACTTCCTAGAGTaGTGCACAGCTCACCTTCCT +
Preference number: 2 (lower is better)
Translates to: LQAEEEGEEEEAAAAPRPRDFLE*CTAHLP
Trigger: AGGAAGGTGAGCTGTGCATCACTCTAGGAAGTCTCT...AGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR-3UTR TCA 90 bp TTTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCGTTTCCCGTGTGTCTTaGGTAAGTGCACACACAGAC +
Preference number: 2 (lower is better)
Translates to: FTSGGGGGGGGGGSCTKAVSRVS*VSAHTD
Trigger: GTCTGTGTGTGCACTTACTCAAGACACACGGGAAAC...GGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR-3UTR CCA 90 bp CCACCCATGCTTCTGACACCAAGGCTAGAAATGTATGCAGTAGGCACAGGACACAACACCAATGCTGAGTaGGGTCCCCACAAGCCAGGA +
Preference number: 2 (lower is better)
Translates to: PPMLLTPRLEMYAVGTGHNTNAE*GPHKPG
Trigger: TCCTGGCTTGTGGGGACCCCACTCAGCATTGGTGTT...GTGTCCTGTGCCTACTGCATACATTTCTAGCCTTGGTGTCAGAAGCATGGGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR-3UTR TCA 90 bp TGCTTTGGCTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCAGAGACTTCCTAGAGTaGTGCACAGCTCACCTTCCT +
Preference number: 2 (lower is better)
Translates to: CFGLCGLTSRHCHTLSMARDFLE*CTAHLP
Trigger: AGGAAGGTGAGCTGTGCATCACTCTAGGAAGTCTCT...GGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR-3UTR TCA 90 bp CCCTACCCTTCTCTCACGATGCCTCTCTTCCTTCATTCTTCATTAACAACTCCAAAGCCACACGGCGAGTaGGTCCTAAGAGACCCGAAA +
Preference number: 2 (lower is better)
Translates to: PYPSLTMPLFLHSSLTTPKPHGE*VLRDPK
Trigger: TTTCGGGTCTCTTAGGACTCACTCGCCGTGTGGCTT...TGGAGTTGTTAATGAAGAATGAAGGAAGAGAGGCATCGTGAGAGAAGGGTAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR-3UTR GCA 90 bp CTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTGCACAGCTCACCTTCCTaGCTCACTCATGAGAGGCAG +
Preference number: 2 (lower is better)
Translates to: LKWLSKVLWKKSWMLWLVHSSPS*LTHERQ
Trigger: CTGCCTCTCATGAGTGAGGCAGGAAGGTGAGCTGTG...CACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR-3UTR CCA 90 bp CTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTGGGTCAGTGTAGCCACTaGGAGACTAAGGTAGCGTGC +
Preference number: 2 (lower is better)
Translates to: LKWLSKVLWKKSWMLWLVGQCSH*ETKVAC
Trigger: GCACGCTACCTTAGTCTCCCAGTGGCTACACTGACC...CACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR-3UTR TCA 90 bp CTCCTCAGAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGAAGCCACACGGCGAGTaGGTCCTAAGAGACCCGAAA +
Preference number: 2 (lower is better)
Translates to: LLRDVSEMAIKGSVEEVLKPHGE*VLRDPK
Trigger: TTTCGGGTCTCTTAGGACTCACTCGCCGTGTGGCTT...CAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTCTGAGGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR-3UTR CCA 90 bp CTCCTCAGAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGAACACCAATGCTGAGTaGGGTCCCCACAAGCCAGGA +
Preference number: 2 (lower is better)
Translates to: LLRDVSEMAIKGSVEEVLNTNAE*GPHKPG
Trigger: TCCTGGCTTGTGGGGACCCCACTCAGCATTGGTGTT...CAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTCTGAGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR-3UTR CCA 90 bp CTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGCAGCTTTAGAAGGTAACCACTTATCACCCTaGTCTAGTGGACTCCATTAC +
Preference number: 2 (lower is better)
Translates to: LPDTVTHCQWPLPAALEGNHLSP*SSGLHY
Trigger: GTAATGGAGTCCACTAGACCAGGGTGATAAGTGGTT...ACCTTCTAAAGCTGCTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR CAA 90 bp AATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTaGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCC +
Preference number: 2 (lower is better)
Translates to: NGYQRFCGRSLGCFG*CGLTSRHCHTLSMA
Trigger: GGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR-3UTR TCA 90 bp TCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTGTTTCCCGTGTGTCTTaGGTAAGTGCACACACAGAC +
Preference number: 2 (lower is better)
Translates to: SEMAIKGSVEEVLDALACVSRVS*VSAHTD
Trigger: GTCTGTGTGTGCACTTACTCAAGACACACGGGAAAC...ACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR-3UTR TCA 90 bp GAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTGCACATTTGCAATTCTaGTGGGAGGAGCCTCGAAGG +
Preference number: 2 (lower is better)
Translates to: EMYLKWLSKVLWKKSWMLAHLQF*WEEPRR
Trigger: CCTTCGAGGCTCCTCCCATCAGAATTGCAAATGTGC...AAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR-3UTR GCA 90 bp CTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTGCACAGGACACAGCCTTaGCACTTCCATTTGTGTAAT +
Preference number: 2 (lower is better)
Translates to: LKWLSKVLWKKSWMLWLVHRTQP*HFHLCN
Trigger: ATTACACAAATGGAAGTGGCAAGGCTGTGTCCTGTG...CACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR-3UTR GCA 90 bp CTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTGAAGGCTAGAAATGTATaGAGTAGGCACAGGACACAG +
Preference number: 2 (lower is better)
Translates to: LKWLSKVLWKKSWMLWLVKARNV*SRHRTQ
Trigger: CTGTGTCCTGTGCCTACTGCATACATTTCTAGCCTT...CACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR-3UTR GCA 90 bp TGCTTTGGCTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCCCAAAAGTTAGAAAATaGCAGGTGTCACATTTCAAG +
Preference number: 2 (lower is better)
Translates to: CFGLCGLTSRHCHTLSMAPKVRK*QVSHFK
Trigger: CTTGAAATGTGACACCTGGCATTTTCTAACTTTTGG...GGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR-3UTR CCA 90 bp TCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTGTCACACATTGTCAATaGCCACTGCCAGCAGCTTTA +
Preference number: 2 (lower is better)
Translates to: SEMAIKGSVEEVLDALACVTHCQ*PLPAAL
Trigger: TAAAGCTGCTGGCAGTGGCCATTGACAATGTGTGAC...ACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR-3UTR CCA 90 bp CTCCTCAGAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGATGCTTTGGCTTGTGTaGCTTGACTTCCAGACACTG +
Preference number: 2 (lower is better)
Translates to: LLRDVSEMAIKGSVEEVLMLWLV*LDFQTL
Trigger: CAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCAT...CAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTCTGAGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR-3UTR GCA 90 bp CTCCTCAGAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGAAGGCTAGAAATGTATaGAGTAGGCACAGGACACAG +
Preference number: 2 (lower is better)
Translates to: LLRDVSEMAIKGSVEEVLKARNV*SRHRTQ
Trigger: CTGTGTCCTGTGCCTACTGCATACATTTCTAGCCTT...CAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTCTGAGGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR-3UTR TCA 90 bp TTTCTTTGGTATAGCCAAAAGTTAGAAAATGCCAGGTGTCACATTTCAAGTGACCTCCATTACCCTACCTaGACTCTGACCTTTTCTCCT +
Preference number: 2 (lower is better)
Translates to: FLWYSQKLENARCHISSDLHYPT*TLTFSP
Trigger: AGGAGAAAAGGTCAGAGTTCAGGTAGGGTAATGGAG...GTCACTTGAAATGTGACACCTGGCATTTTCTAACTTTTGGCTATACCAAAGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR-3UTR GCA 90 bp TCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTTGTGTCTTGAGTAAGTaGACACACAGACATGTTCTA +
Preference number: 2 (lower is better)
Translates to: SEMAIKGSVEEVLDALACCVLSK*THRHVL
Trigger: TAGAACATGTCTGTGTGTGCACTTACTCAAGACACA...ACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR-3UTR GCA 90 bp GAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTGTTCTAAAGCACATTTaGAATTCTGATGGGAGGAGC +
Preference number: 2 (lower is better)
Translates to: EMYLKWLSKVLWKKSWMLVLKHI*NSDGRS
Trigger: GCTCCTCCCATCAGAATTGCAAATGTGCTTTAGAAC...AAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR-3UTR CCA 90 bp TTTCTTTGGTATAGCCAAAAGTTAGAAAATGCCAGGTGTCACATTTCAAGTGACAACCACTTATCACCCTaGTCTAGTGGACTCCATTAC +
Preference number: 2 (lower is better)
Translates to: FLWYSQKLENARCHISSDNHLSP*SSGLHY
Trigger: GTAATGGAGTCCACTAGACCAGGGTGATAAGTGGTT...GTCACTTGAAATGTGACACCTGGCATTTTCTAACTTTTGGCTATACCAAAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR-3UTR TCA 90 bp TTTCTTTGGTATAGCCAAAAGTTAGAAAATGCCAGGTGTCACATTTCAAGTGACACCCTACCTGAACTCTaGCCTTTTCTCCTATTTCTA +
Preference number: 2 (lower is better)
Translates to: FLWYSQKLENARCHISSDTLPEL*PFLLFL
Trigger: TAGAAATAGGAGAAAAGGTCAGAGTTCAGGTAGGGT...GTCACTTGAAATGTGACACCTGGCATTTTCTAACTTTTGGCTATACCAAAGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR-3UTR CAA 90 bp TTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTGGTTTCCCGTGTGTCTaGAGTAAGTGCACACACAGA +
Preference number: 3 (lower is better)
Translates to: LQAEEEGEEEEAAAAPRPGFPCV*SKCTHR
Trigger: TCTGTGTGTGCACTTACTCAAGACACACGGGAAACC...AGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR CCA 72 bp CCACTGCCAGCAGCTTTAGAAGGTCAGTGTAGCCACTaGGAGACTAAGGTAGCGTGCGCTTCGGCTGGATAC +
Preference number: 3 (lower is better)
Translates to: PLPAALEGQCSH*ETKVACASAGY
Trigger: GTATCCAGCCGAAGCGCACGCTACCTTAGTCTCCCAGTGGCTACACTGACCTTCTAAAGCTGCTGGCAGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR TCA 72 bp TTGAAGCTTCTACTTGCTTTTAAGCCACACGGCGAGTaGGTCCTAAGAGACCCGAAAGGCCGAGACCTCCCC +
Preference number: 3 (lower is better)
Translates to: LKLLLAFKPHGE*VLRDPKGRDLP
Trigger: GGGGAGGTCTCGGCCTTTCGGGTCTCTTAGGACTCACTCGCCGTGTGGCTTAAAAGCAAGTAGAAGCTTCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR TCA 72 bp CACAAGCCAGGAAAAGGCCACAGAGACTTCCTAGAGTaGTGCACAGCTCACCTTCCTGCCTCACTCATGAGA +
Preference number: 3 (lower is better)
Translates to: HKPGKGHRDFLE*CTAHLPASLMR
Trigger: TCTCATGAGTGAGGCAGGAAGGTGAGCTGTGCATCACTCTAGGAAGTCTCTGTGGCCTTTTCCTGGCTTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR GCA 72 bp CCCACCCATGCTTCTGACACCAAGGCTAGAAATGTATaGAGTAGGCACAGGACACAGCCTTGCCACTTCCAT +
Preference number: 3 (lower is better)
Translates to: PTHASDTKARNV*SRHRTQPCHFH
Trigger: ATGGAAGTGGCAAGGCTGTGTCCTGTGCCTACTGCATACATTTCTAGCCTTGGTGTCAGAAGCATGGGTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR GCA 72 bp CGGTTGTACACTCTAATCCCGGTTCTAAAGCACATTTaGAATTCTGATGGGAGGAGCCTCGAAGGGACTCAG +
Preference number: 3 (lower is better)
Translates to: RLYTLIPVLKHI*NSDGRSLEGTQ
Trigger: CTGAGTCCCTTCGAGGCTCCTCCCATCAGAATTGCAAATGTGCTTTAGAACCGGGATTAGAGTGTACAACCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR TCA 72 bp CACTCTAATCCCGGTTCTAAAGCACATTTGCAATTCTaGTGGGAGGAGCCTCGAAGGGACTCAGCAACTCAA +
Preference number: 3 (lower is better)
Translates to: HSNPGSKAHLQF*WEEPRRDSATQ
Trigger: TTGAGTTGCTGAGTCCCTTCGAGGCTCCTCCCATCAGAATTGCAAATGTGCTTTAGAACCGGGATTAGAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR TCA 72 bp AGCAAACCATCTTCCCCAGGAAGCACTTTCAGAAGTTaGAGCTTCTACTTGCTTTTAAGCCACACGGCGAGT +
Preference number: 3 (lower is better)
Translates to: SKPSSPGSTFRS*SFYLLLSHTAS
Trigger: ACTCGCCGTGTGGCTTAAAAGCAAGTAGAAGCTTCAACTTCTGAAAGTGCTTCCTGGGGAAGATGGTTTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR CCA 72 bp CTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTaGCTTGTGTGGCTTGACTTCCAGACACTGTCACAC +
Preference number: 3 (lower is better)
Translates to: LSKVLWKKSWML*LVWLDFQTLSH
Trigger: GTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR-3UTR CAA 90 bp CTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGAAGCACTTTCAGAAGTaGAAGCTTCTACTTGCTTTT +
Preference number: 3 (lower is better)
Translates to: LVWLDFQTLSHIVNGHCQKHFQK*KLLLAF
Trigger: AAAAGCAAGTAGAAGCTTCAACTTCTGAAAGTGCTT...CTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR GCA 72 bp AATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATaGTTTGGCTTGTGTGGCTTGACTTCCAGACACTGT +
Preference number: 3 (lower is better)
Translates to: NGYQRFCGRSLG*FGLCGLTSRHC
Trigger: ACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR CCA 72 bp GTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTGTaGCTTGACTTCCAGACACTGTCACACATTGTCAAT +
Preference number: 3 (lower is better)
Translates to: VLWKKSWMLWLV*LDFQTLSHIVN
Trigger: ATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCATCCAAGACTTCTTCCACAGAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR TCA 72 bp CCTGGTCTAGTGGACTCCATTACCCTACCTGAACTCTaGCCTTTTCTCCTATTTCTATACGTAACGTTAGTG +
Preference number: 3 (lower is better)
Translates to: PGLVDSITLPEL*PFLLFLYVTLV
Trigger: CACTAACGTTACGTATAGAAATAGGAGAAAAGGTCAGAGTTCAGGTAGGGTAATGGAGTCCACTAGACCAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR TCA 72 bp TTATCACCCTGGTCTAGTGGACTCCATTACCCTACCTaGACTCTGACCTTTTCTCCTATTTCTATACGTAAC +
Preference number: 3 (lower is better)
Translates to: LSPWSSGLHYPT*TLTFSPISIRN
Trigger: GTTACGTATAGAAATAGGAGAAAAGGTCAGAGTTCAGGTAGGGTAATGGAGTCCACTAGACCAGGGTGATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR TCA 72 bp AGCCATGCCCTACCGATTTTCAGCAATTTCTGTCACTaGCTAGAGTCACCGTTTTCTTCAAAGGGAGATAAT +
Preference number: 3 (lower is better)
Translates to: SHALPIFSNFCH*LESPFSSKGDN
Trigger: ATTATCTCCCTTTGAAGAAAACGGTGACTCTAGTCAGTGACAGAAATTGCTGAAAATCGGTAGGGCATGGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR CCA 72 bp TCAGAGATGTATCTGAAATGGCTATCAAAGGTTCTGTaGAAGAAGTCTTGGATGCTTTGGCTTGTGTGGCTT +
Preference number: 3 (lower is better)
Translates to: SEMYLKWLSKVL*KKSWMLWLVWL
Trigger: AAGCCACACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTCTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR-3UTR CAA 90 bp TTTCTTTGGTATAGCCAAAAGTTAGAAAATGCCAGGTGTCACATTTCAAGTGACGGTTTCCCGTGTGTCTaGAGTAAGTGCACACACAGA +
Preference number: 3 (lower is better)
Translates to: FLWYSQKLENARCHISSDGFPCV*SKCTHR
Trigger: TCTGTGTGTGCACTTACTCAAGACACACGGGAAACC...GTCACTTGAAATGTGACACCTGGCATTTTCTAACTTTTGGCTATACCAAAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR TCA 72 bp GCTTTGTTTGCTAGATTCTCTCCTCAGAGATGTATCTaGAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTT +
Preference number: 3 (lower is better)
Translates to: ALFARFSPQRCI*NGYQRFCGRSL
Trigger: AAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTCTGAGGAGAGAATCTAGCAAACAAAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR-3UTR CAA 90 bp GAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTAAGCACTTTCAGAAGTaGAAGCTTCTACTTGCTTTT +
Preference number: 3 (lower is better)
Translates to: EMYLKWLSKVLWKKSWMLKHFQK*KLLLAF
Trigger: AAAAGCAAGTAGAAGCTTCAACTTCTGAAAGTGCTT...AAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR-3UTR CAA 90 bp ATGCCTCTCTTCCTTCATTCTTCATTAACAACTCCAGGAAGGAATTCATTTAAACCTTGCCACTTCCATTaGTGTAATTTTTACAAGCGG +
Preference number: 3 (lower is better)
Translates to: MPLFLHSSLTTPGRNSFKPCHFH*CNFYKR
Trigger: CCGCTTGTAAAAATTACACAAATGGAAGTGGCAAGG...TTTAAATGAATTCCTTCCTGGAGTTGTTAATGAAGAATGAAGGAAGAGAGGCAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp ACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTCCGGGGCTGGAGCCGGCTaGAAAGGTGGGTCCCTGAGA +
Preference number: 4 (lower is better)
Translates to: TSGGGGGGGGGGSCTKASGAGAG*KGGSLR
Trigger: TCTCAGGGACCCACCTTTGCAGCCGGCTCCAGCCCC...GGAGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp TTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTTGCCTCAGTGTTGGCTaGGCAGCCCCCGGTGGGGTT +
Preference number: 4 (lower is better)
Translates to: LQAEEEGEEEEAAAAPRPCLSVG*AAPGGV
Trigger: AACCCCACCGGGGGCTGCTCAGCCAACACTGAGGCA...AGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp TTTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCCGGCACTTGGGGCACTaGGACTCTCGACCCCTCCTG +
Preference number: 4 (lower is better)
Translates to: FTSGGGGGGGGGGSCTKARHLGH*DSRPLL
Trigger: CAGGAGGGGTCGAGAGTCCCAGTGCCCCAAGTGCCG...GGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAAA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp ACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTCCCGCTACAGAGGAGGCTaGCCTGGTCCATCTCCTGAC +
Preference number: 4 (lower is better)
Translates to: TSGGGGGGGGGGSCTKASRYRGG*PGPSPD
Trigger: GTCAGGAGATGGACCAGGCCAGCCTCCTCTGTAGCG...GGAGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp ACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTCCCGCTCTGGGACGGAGTaGCCCCACACAGAGAATACA +
Preference number: 4 (lower is better)
Translates to: TSGGGGGGGGGGSCTKASRSGTE*PHTENT
Trigger: TGTATTCTCTGTGTGGGGTCACTCCGTCCCAGAGCG...GGAGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp ACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTCCTCTGGCTTCTGGACCTaGGGAGCCAGGGTTCCTCAA +
Preference number: 4 (lower is better)
Translates to: TSGGGGGGGGGGSCTKASSGFWT*GARVPQ
Trigger: TTGAGGAACCCTGGCTCCCCAGGTCCAGAAGCCAGA...GGAGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp ACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTCCTTCACGTCTTCGGTCTaGCAGCTGGTGTCCCTGGTT +
Preference number: 4 (lower is better)
Translates to: TSGGGGGGGGGGSCTKASFTSSV*QLVSLV
Trigger: AACCAGGGACACCAGCTGTCAGACCGAAGACGTGAA...GGAGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp TTTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCCTGTCATGGTCACCCTaGCTCTGGCTCTTGGCAGGC +
Preference number: 4 (lower is better)
Translates to: FTSGGGGGGGGGGSCTKALSWSP*LWLLAG
Trigger: GCCTGCCAAGAGCCAGAGTCAGGGTGACCATGACAG...GGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp ACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTCCCTTCTCTTCTGGTGTTaGCAGCGGCAGGGACTTGGT +
Preference number: 4 (lower is better)
Translates to: TSGGGGGGGGGGSCTKASLLFWC*QRQGLG
Trigger: ACCAAGTCCCTGCCGCTGCCAACACCAGAAGAGAAG...GGAGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp TTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTCCGCGTCTTCTCTTCTaGTGTTGGCAGCGGCAGGGA +
Preference number: 4 (lower is better)
Translates to: LQAEEEGEEEEAAAAPRPPRLLF*CWQRQG
Trigger: TCCCTGCCGCTGCCAACACCAGAAGAGAAGACGCGG...AGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp TTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTGTCATGGGGCTGCTCTaGATGCGGTTCCGCATGCTG +
Preference number: 4 (lower is better)
Translates to: LQAEEEGEEEEAAAAPRPVMGLL*MRFRML
Trigger: CAGCATGCGGAACCGCATCCAGAGCAGCCCCATGAC...AGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp ACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTCCCGATCAGGCTCTCATTaGGCACCTGACCGTTTGTCT +
Preference number: 4 (lower is better)
Translates to: TSGGGGGGGGGGSCTKASRSGSH*APDRLS
Trigger: AGACAAACGGTCAGGTGCTCAATGAGAGCCTGATCG...GGAGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp ACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTCCGCCTGTTTTCTTTCATaGGTTTGGGGTCCAGAGGCG +
Preference number: 4 (lower is better)
Translates to: TSGGGGGGGGGGSCTKASACFLS*VWGPEA
Trigger: CGCCTCTGGACCCCAAACTCATGAAAGAAAACAGGC...GGAGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp TTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTGCAAGCCAGCTTCTCTaGCCTGTTGAGACAGGCAGC +
Preference number: 4 (lower is better)
Translates to: LQAEEEGEEEEAAAAPRPASQLL*PVETGS
Trigger: GCTGCCTGTCTCAACAGGGCAGAGAAGCTGGCTTGC...AGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp TTTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTCTGGCTTCTGGACCTaGGGAGCCAGGGTTCCTCAA +
Preference number: 4 (lower is better)
Translates to: FTSGGGGGGGGGGSCTKASGFWT*GARVPQ
Trigger: TTGAGGAACCCTGGCTCCCCAGGTCCAGAAGCCAGA...GGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp TTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTAGACCCTACTTGCTTTaGAGAGGCCAGGTTAGGGGC +
Preference number: 4 (lower is better)
Translates to: LQAEEEGEEEEAAAAPRPRPYLL*RGQVRG
Trigger: GCCCCTAACCTGGCCTCTCCAAAGCAAGTAGGGTCT...AGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp TTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTTCAGGCCTTCGTTCTTaGCCCACTCTTCCTGAGCTC +
Preference number: 4 (lower is better)
Translates to: LQAEEEGEEEEAAAAPRPSGLRS*PTLPEL
Trigger: GAGCTCAGGAAGAGTGGGCCAAGAACGAAGGCCTGA...AGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp TTTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCGTAGGCTGCATGAGGTaGAACCACACATGCTGGACT +
Preference number: 4 (lower is better)
Translates to: FTSGGGGGGGGGGSCTKAVGCMR*NHTCWT
Trigger: AGTCCAGCATGTGTGGTTTCACCTCATGCAGCCTAC...GGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp TTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTCTTGCCATCCACATCTaGAGGGTGGTCAGGAAAGCT +
Preference number: 4 (lower is better)
Translates to: LQAEEEGEEEEAAAAPRPLAIHI*RVVRKA
Trigger: AGCTTTCCTGACCACCCTTCAGATGTGGATGGCAAG...AGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp TTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTGCCTGTTTTCTTTCATaGGTTTGGGGTCCAGAGGCG +
Preference number: 4 (lower is better)
Translates to: LQAEEEGEEEEAAAAPRPACFLS*VWGPEA
Trigger: CGCCTCTGGACCCCAAACTCATGAAAGAAAACAGGC...AGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp TTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTTTGGCCCACTCTTCCTaGGCTCTCCTGTTCTTGTTG +
Preference number: 4 (lower is better)
Translates to: LQAEEEGEEEEAAAAPRPLAHSS*ALLFLL
Trigger: CAACAAGAACAGGAGAGCTCAGGAAGAGTGGGCCAA...AGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp TTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTCTTCGGCAGCCATCTTaGCTCAGCTTGTCACATTCC +
Preference number: 4 (lower is better)
Translates to: LQAEEEGEEEEAAAAPRPLRQPS*LSLSHS
Trigger: GGAATGTGACAAGCTGAGGCAAGATGGCTGCCGAAG...AGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp ACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTCCGCCTCTTTGTCTGCCTaGACAGGGAGGAGAAATTTA +
Preference number: 4 (lower is better)
Translates to: TSGGGGGGGGGGSCTKASASLSA*TGRRNL
Trigger: TAAATTTCTCCTCCCTGTCCAGGCAGACAAAGAGGC...GGAGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037341.14
CDS-3UTR GCA 90 bp TTTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCACAGCTCTCCATCACTaGGGAACAGCCTCTTTGTCT +
Preference number: 4 (lower is better)
Translates to: FTSGGGGGGGGGGSCTKATALHH*GTASLS
Trigger: AGACAAAGAGGCTGTTCCGCAGTGATGGAGAGCTGT...GGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037341.14
CDS-3UTR CCA 90 bp TTTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCAATACACGTTGGGAGTaGTGGTGGAGGTCAAGCTAC +
Preference number: 4 (lower is better)
Translates to: FTSGGGGGGGGGGSCTKANTRWE*WWRSSY
Trigger: GTAGCTTGACCTCCACCACCACTCCCAACGTGTATT...GGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp TTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTGTCACAGAGGCAGCCTaGCTTTCACTCTCCATTTCA +
Preference number: 4 (lower is better)
Translates to: LQAEEEGEEEEAAAAPRPVTEAA*LSLSIS
Trigger: TGAAATGGAGAGTGAAAGCCAGGCTGCCTCTGTGAC...AGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp TTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTACCTGGTATCACCCTTaGGAGATGTTTGGTCCAAAC +
Preference number: 4 (lower is better)
Translates to: LQAEEEGEEEEAAAAPRPTWYHP*EMFGPN
Trigger: GTTTGGACCAAACATCTCTCAAGGGTGATACCAGGT...AGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp TTTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTCGTTGTTCCTGAGCTaGTGGTTCAGAAAACAGGAC +
Preference number: 4 (lower is better)
Translates to: FTSGGGGGGGGGGSCTKASLFLS*WFRKQD
Trigger: GTCCTGTTTTCTGAACCATCAGCTCAGGAACAACGA...GGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp TTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTGGAGTTCGTTGTTCCTaGGCTGATGGTTCAGAAAAC +
Preference number: 4 (lower is better)
Translates to: LQAEEEGEEEEAAAAPRPGVRCS*ADGSEN
Trigger: GTTTTCTGAACCATCAGCTCAGGAACAACGAACTCC...AGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp TTTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTCCAAAAACCTCAACTaGTGGGATTTGGGCCTCGAA +
Preference number: 4 (lower is better)
Translates to: FTSGGGGGGGGGGSCTKASKNLN*WDLGLE
Trigger: TTCGAGGCCCAAATCCCAGCAGTTGAGGTTTTTGGA...GGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CCGCCCCCTAAAGTACCTGAACCAATGAGTTGCTTAGCCACTTCCCAGCCCCTTTTGCTGCCTCAGTGTTaGCTGAGCAGCCCCCGGTGG +
Preference number: 4 (lower is better)
Translates to: PPPKVPEPMSCLATSQPLLLPQC*LSSPRW
Trigger: CCACCGGGGGCTGCTCAGCCAACACTGAGGCAGCAA...AAGGGGCTGGGAAGTGGCTAAGCAACTCATTGGTTCAGGTACTTTAGGGGGCGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp TTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTGTGGGTGTATTCGACTaGCTAGAATACCCACTGGAT +
Preference number: 4 (lower is better)
Translates to: LQAEEEGEEEEAAAAPRPVGVFD*LEYPLD
Trigger: ATCCAGTGGGTATTCTAGCCAGTCGAATACACCCAC...AGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp TTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTATGTTTGGTCCAAACTaGAGCTGCTCACGTTACTTG +
Preference number: 4 (lower is better)
Translates to: LQAEEEGEEEEAAAAPRPMFGPN*SCSRYL
Trigger: CAAGTAACGTGAGCAGCTGCAGTTTGGACCAAACAT...AGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp ACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTCCTACAATGATAGAGTATaGCTTGGGATCCATTTTCCC +
Preference number: 4 (lower is better)
Translates to: TSGGGGGGGGGGSCTKASYNDRV*LGIHFP
Trigger: GGGAAAATGGATCCCAAGCCATACTCTATCATTGTA...GGAGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGCGGCACTTGGGGCACTaGGACTCTCGACCCCTCCTG +
Preference number: 4 (lower is better)
Translates to: LVWLDFQTLSHIVNGHCQRHLGH*DSRPLL
Trigger: CAGGAGGGGTCGAGAGTCCCAGTGCCCCAAGTGCCG...CTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp CTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGCCAACTCACAGCACGTaGGAGGGAGCCTGGGCTTGC +
Preference number: 4 (lower is better)
Translates to: LVWLDFQTLSHIVNGHCQPTHST*EGAWAC
Trigger: GCAAGCCCAGGCTCCCTCTCACGTGCTGTGAGTTGG...CTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037341.14
CDS-3UTR TCA 90 bp TTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTTGCTATTTCGGGATTTaGGGAAAGCAGATGGCTTTA +
Preference number: 4 (lower is better)
Translates to: LQAEEEGEEEEAAAAPRPCYFGI*GKQMAL
Trigger: TAAAGCCATCTGCTTTCCTCAAATCCCGAAATAGCA...AGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp TTTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTGCTATTTCGGGATTTaGGGAAAGCAGATGGCTTTA +
Preference number: 4 (lower is better)
Translates to: FTSGGGGGGGGGGSCTKACYFGI*GKQMAL
Trigger: TAAAGCCATCTGCTTTCCTCAAATCCCGAAATAGCA...GGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp CCACCCATGCTTCTGACACCAAGGCTAGAAATGTATGCAGTAGGCACAGGACACGAGCATCTCAGCCGCTaGCATGCGAGCGCTGGTGTC +
Preference number: 4 (lower is better)
Translates to: PPMLLTPRLEMYAVGTGHEHLSR*HASAGV
Trigger: GACACCAGCGCTCGCATGTCAGCGGCTGAGATGCTC...GTGTCCTGTGCCTACTGCATACATTTCTAGCCTTGGTGTCAGAAGCATGGGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp CTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGCCTCTCCCTCGGAGATaGCGGTCATGGGGCTGCTCT +
Preference number: 4 (lower is better)
Translates to: LVWLDFQTLSHIVNGHCQPLPRR*RSWGCS
Trigger: AGAGCAGCCCCATGACCGTCATCTCCGAGGGAGAGG...CTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp TGCTTTGGCTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCGCATGCTGTACCTGCTaGTGGCCGCAGAGGGTGGCG +
Preference number: 4 (lower is better)
Translates to: CFGLCGLTSRHCHTLSMAACCTC*WPQRVA
Trigger: CGCCACCCTCTGCGGCCAGCAGCAGGTACAGCATGC...GGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp AAAAGGCCACAGAGACTTCCTAGAGTGATGCACAGCTCACCTTCCTGCCTCACTGGATGCGGTTCCGCATaGTGTACCTGCTGCTGGCCG +
Preference number: 4 (lower is better)
Translates to: KRPQRLPRVMHSSPSCLTGCGSA*CTCCWP
Trigger: CGGCCAGCAGCAGGTACAGCATGCGGAACCGCATCC...AGTGAGGCAGGAAGGTGAGCTGTGCATCACTCTAGGAAGTCTCTGTGGCCTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp AAAAGGCCACAGAGACTTCCTAGAGTGATGCACAGCTCACCTTCCTGCCTCACTTTGCTGCCTCAGTGTTaGCTGAGCAGCCCCCGGTGG +
Preference number: 4 (lower is better)
Translates to: KRPQRLPRVMHSSPSCLTLLPQC*LSSPRW
Trigger: CCACCGGGGGCTGCTCAGCCAACACTGAGGCAGCAA...AGTGAGGCAGGAAGGTGAGCTGTGCATCACTCTAGGAAGTCTCTGTGGCCTTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp AAAAGGCCACAGAGACTTCCTAGAGTGATGCACAGCTCACCTTCCTGCCTCACTGCCTGGTCCATCTCCTaGCCCGTCAGTCTGTCCAGA +
Preference number: 4 (lower is better)
Translates to: KRPQRLPRVMHSSPSCLTAWSIS*PVSLSR
Trigger: TCTGGACAGACTGACGGGTCAGGAGATGGACCAGGC...AGTGAGGCAGGAAGGTGAGCTGTGCATCACTCTAGGAAGTCTCTGTGGCCTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp AAAAGGCCACAGAGACTTCCTAGAGTGATGCACAGCTCACCTTCCTGCCTCACTCGCCGAAGGCTGGCCTaGCGATCGAAATTCTCCCCA +
Preference number: 4 (lower is better)
Translates to: KRPQRLPRVMHSSPSCLTRRRLA*RSKFSP
Trigger: TGGGGAGAATTTCGATCGTCAGGCCAGCCTTCGGCG...AGTGAGGCAGGAAGGTGAGCTGTGCATCACTCTAGGAAGTCTCTGTGGCCTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp CTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGAGCTTGGCTTGGCGGTaGAGGTCCTCAACACAGGGG +
Preference number: 4 (lower is better)
Translates to: LVWLDFQTLSHIVNGHCQSLAWR*RSSTQG
Trigger: CCCCTGTGTTGAGGACCTGCACCGCCAAGCCAAGCT...CTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp AAAAGGCCACAGAGACTTCCTAGAGTGATGCACAGCTCACCTTCCTGCCTCACTTGGGGCTGCTCTGGATaGGGTTCCGCATGCTGTACC +
Preference number: 4 (lower is better)
Translates to: KRPQRLPRVMHSSPSCLTWGCSG*GSACCT
Trigger: GGTACAGCATGCGGAACCGCATCCAGAGCAGCCCCA...AGTGAGGCAGGAAGGTGAGCTGTGCATCACTCTAGGAAGTCTCTGTGGCCTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp AAAAGGCCACAGAGACTTCCTAGAGTGATGCACAGCTCACCTTCCTGCCTCACTCCGCGTCTTCTCTTCTaGTGTTGGCAGCGGCAGGGA +
Preference number: 4 (lower is better)
Translates to: KRPQRLPRVMHSSPSCLTPRLLF*CWQRQG
Trigger: TCCCTGCCGCTGCCAACACCAGAAGAGAAGACGCGG...AGTGAGGCAGGAAGGTGAGCTGTGCATCACTCTAGGAAGTCTCTGTGGCCTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp TGCTTTGGCTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCGGAACCACGTCAGCCTaGACCGTCTGGGCTTGCTGC +
Preference number: 4 (lower is better)
Translates to: CFGLCGLTSRHCHTLSMAGTTSA*TVWACC
Trigger: GCAGCAAGCCCAGACGGTCCAGGCTGACGTGGTTCC...GGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CCACCCATGCTTCTGACACCAAGGCTAGAAATGTATGCAGTAGGCACAGGACACCAGGTGTGGCTTCAGTaGGGATGCCCGCCCATTGCT +
Preference number: 4 (lower is better)
Translates to: PPMLLTPRLEMYAVGTGHQVWLQ*GCPPIA
Trigger: AGCAATGGGCGGGCATCCCCACTGAAGCCACACCTG...GTGTCCTGTGCCTACTGCATACATTTCTAGCCTTGGTGTCAGAAGCATGGGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp TGCTTTGGCTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCAGGGCTGGGCACGCCTaGGAAAGCTTCGCTCCCGTT +
Preference number: 4 (lower is better)
Translates to: CFGLCGLTSRHCHTLSMARAGHA*ESFAPV
Trigger: AACGGGAGCGAAGCTTTCCCAGGCGTGCCCAGCCCT...GGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp TGCTTTGGCTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCTGTTGGGGGAGCAGCTaGATGGGCTGTCCGGGCTGT +
Preference number: 4 (lower is better)
Translates to: CFGLCGLTSRHCHTLSMACWGSS*MGCPGC
Trigger: ACAGCCCGGACAGCCCATCCAGCTGCTCCCCCAACA...GGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp TGCTTTGGCTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCCTGTCATGGTCACCCTaGCTCTGGCTCTTGGCAGGC +
Preference number: 4 (lower is better)
Translates to: CFGLCGLTSRHCHTLSMALSWSP*LWLLAG
Trigger: GCCTGCCAAGAGCCAGAGTCAGGGTGACCATGACAG...GGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp CCACCCATGCTTCTGACACCAAGGCTAGAAATGTATGCAGTAGGCACAGGACACTGGCTTCCTGCTGGGTaGAGAGTCTGGGAGCAGAGT +
Preference number: 4 (lower is better)
Translates to: PPMLLTPRLEMYAVGTGHWLPAG*RVWEQS
Trigger: ACTCTGCTCCCAGACTCTTCACCCAGCAGGAAGCCA...GTGTCCTGTGCCTACTGCATACATTTCTAGCCTTGGTGTCAGAAGCATGGGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp TGCTTTGGCTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCCTGTGGGCTCCGCTGTaGAATCTCTCTGCGGAGGTG +
Preference number: 4 (lower is better)
Translates to: CFGLCGLTSRHCHTLSMALWAPL*NLSAEV
Trigger: CACCTCCGCAGAGAGATTTCACAGCGGAGCCCACAG...GGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp CTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGACCGTCTGGGCTTGCTaGCGCGTCTTCTCTTCTGGT +
Preference number: 4 (lower is better)
Translates to: LVWLDFQTLSHIVNGHCQTVWAC*RVFSSG
Trigger: ACCAGAAGAGAAGACGCGGCAGCAAGCCCAGACGGT...CTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp AAAAGGCCACAGAGACTTCCTAGAGTGATGCACAGCTCACCTTCCTGCCTCACTTGGACCGTCTGGGCTTaGTGCCGCGTCTTCTCTTCT +
Preference number: 4 (lower is better)
Translates to: KRPQRLPRVMHSSPSCLTWTVWA*CRVFSS
Trigger: AGAAGAGAAGACGCGGCAGCAAGCCCAGACGGTCCA...AGTGAGGCAGGAAGGTGAGCTGTGCATCACTCTAGGAAGTCTCTGTGGCCTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp TGCTTTGGCTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCTGGGGCTGCTCTGGATaGGGTTCCGCATGCTGTACC +
Preference number: 4 (lower is better)
Translates to: CFGLCGLTSRHCHTLSMAWGCSG*GSACCT
Trigger: GGTACAGCATGCGGAACCGCATCCAGAGCAGCCCCA...GGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CCACCCATGCTTCTGACACCAAGGCTAGAAATGTATGCAGTAGGCACAGGACACGACAGCTGGTGTCCCTaGTTTCCAAGCATTGCCCGG +
Preference number: 4 (lower is better)
Translates to: PPMLLTPRLEMYAVGTGHDSWCP*FPSIAR
Trigger: CCGGGCAATGCTTGGAAACCAGGGACACCAGCTGTC...GTGTCCTGTGCCTACTGCATACATTTCTAGCCTTGGTGTCAGAAGCATGGGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGGAGGAACCTGAGAGGTaGCTCATCTGGGCAGCAACG +
Preference number: 4 (lower is better)
Translates to: LVWLDFQTLSHIVNGHCQEEPER*LIWAAT
Trigger: CGTTGCTGCCCAGATGAGCCACCTCTCAGGTTCCTC...CTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGAGCTGCAGTGAATGCTaGAGCGAGGCGATCAGGCTC +
Preference number: 4 (lower is better)
Translates to: LVWLDFQTLSHIVNGHCQSCSEC*SEAIRL
Trigger: GAGCCTGATCGCCTCGCTCCAGCATTCACTGCAGCT...CTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp AAAAGGCCACAGAGACTTCCTAGAGTGATGCACAGCTCACCTTCCTGCCTCACTAAAGGCACCCGTCGGTaGGGGAGCAGAAGGGAACAA +
Preference number: 4 (lower is better)
Translates to: KRPQRLPRVMHSSPSCLTKGTRR*GSRREQ
Trigger: TTGTTCCCTTCTGCTCCCCCACCGACGGGTGCCTTT...AGTGAGGCAGGAAGGTGAGCTGTGCATCACTCTAGGAAGTCTCTGTGGCCTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp CCGCCCCCTAAAGTACCTGAACCAATGAGTTGCTTAGCCACTTCCCAGCCCCTTACATTCCCTCAGCACTaGTTTGAGGTTGAGCTTGGC +
Preference number: 4 (lower is better)
Translates to: PPPKVPEPMSCLATSQPLTFPQH*FEVELG
Trigger: GCCAAGCTCAACCTCAAATCAGTGCTGAGGGAATGT...AAGGGGCTGGGAAGTGGCTAAGCAACTCATTGGTTCAGGTACTTTAGGGGGCGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp AAAAGGCCACAGAGACTTCCTAGAGTGATGCACAGCTCACCTTCCTGCCTCACTTCCCCAAGCCATCACTaGGAGTGTACAGGTTCCCAG +
Preference number: 4 (lower is better)
Translates to: KRPQRLPRVMHSSPSCLTSPSHH*ECTGSQ
Trigger: CTGGGAACCTGTACACTCTCAGTGATGGCTTGGGGA...AGTGAGGCAGGAAGGTGAGCTGTGCATCACTCTAGGAAGTCTCTGTGGCCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp CCGCCCCCTAAAGTACCTGAACCAATGAGTTGCTTAGCCACTTCCCAGCCCCTTTCCCCTTGGCTTCTCTaGGCCCTTCCATCAAAAACA +
Preference number: 4 (lower is better)
Translates to: PPPKVPEPMSCLATSQPLSPWLL*ALPSKT
Trigger: TGTTTTTGATGGAAGGGCTCAGAGAAGCCAAGGGGA...AAGGGGCTGGGAAGTGGCTAAGCAACTCATTGGTTCAGGTACTTTAGGGGGCGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp TGCTTTGGCTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCACACAGGCACAGGGGTaGGTGCTGTGGGTGTATTCG +
Preference number: 4 (lower is better)
Translates to: CFGLCGLTSRHCHTLSMATQAQG*VLWVYS
Trigger: CGAATACACCCACAGCACTCACCCCTGTGCCTGTGT...GGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp CCGCCCCCTAAAGTACCTGAACCAATGAGTTGCTTAGCCACTTCCCAGCCCCTTGCAGATGGCTTTAAGTaGTACTGTGGAGCAGTCGGA +
Preference number: 4 (lower is better)
Translates to: PPPKVPEPMSCLATSQPLADGFK*YCGAVG
Trigger: TCCGACTGCTCCACAGTATCACTTAAAGCCATCTGC...AAGGGGCTGGGAAGTGGCTAAGCAACTCATTGGTTCAGGTACTTTAGGGGGCGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp CCCTACCCTTCTCTCACGATGCCTCTCTTCCTTCATTCTTCATTAACAACTCCAGAGCATCTCAGCCGCTaGCATGCGAGCGCTGGTGTC +
Preference number: 4 (lower is better)
Translates to: PYPSLTMPLFLHSSLTTPEHLSR*HASAGV
Trigger: GACACCAGCGCTCGCATGTCAGCGGCTGAGATGCTC...TGGAGTTGTTAATGAAGAATGAAGGAAGAGAGGCATCGTGAGAGAAGGGTAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp CCGCCCCCTAAAGTACCTGAACCAATGAGTTGCTTAGCCACTTCCCAGCCCCTTTCAGCACAGACATGTTaGCTGAGGAACCTGAGAGGT +
Preference number: 4 (lower is better)
Translates to: PPPKVPEPMSCLATSQPLSAQTC*LRNLRG
Trigger: ACCTCTCAGGTTCCTCAGGCAACATGTCTGTGCTGA...AAGGGGCTGGGAAGTGGCTAAGCAACTCATTGGTTCAGGTACTTTAGGGGGCGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp CCACCCATGCTTCTGACACCAAGGCTAGAAATGTATGCAGTAGGCACAGGACACCAAGAAAGGTGGAGGTaGTGGCACAGGAGGCAAGGA +
Preference number: 4 (lower is better)
Translates to: PPMLLTPRLEMYAVGTGHQERWR*WHRRQG
Trigger: TCCTTGCCTCCTGTGCCAGCACCTCCACCTTTCTTG...GTGTCCTGTGCCTACTGCATACATTTCTAGCCTTGGTGTCAGAAGCATGGGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp TGCTTTGGCTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCGCAAGCCAGCTTCTCTaGCCTGTTGAGACAGGCAGC +
Preference number: 4 (lower is better)
Translates to: CFGLCGLTSRHCHTLSMAASQLL*PVETGS
Trigger: GCTGCCTGTCTCAACAGGGCAGAGAAGCTGGCTTGC...GGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGCAGCTTTAGAAGGTTCATCGGCTTCCACCTaGTGCCCACAAACGGACAGC +
Preference number: 4 (lower is better)
Translates to: LPDTVTHCQWPLPAALEGSSAST*CPQTDS
Trigger: GCTGTCCGTTTGTGGGCACCAGGTGGAAGCCGATGA...ACCTTCTAAAGCTGCTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037341.14
CDS-3UTR CCA 90 bp CCGCCCCCTAAAGTACCTGAACCAATGAGTTGCTTAGCCACTTCCCAGCCCCTTACCGCTTTTCTGGGCTaGGTCCTGTATATCCAGTTC +
Preference number: 4 (lower is better)
Translates to: PPPKVPEPMSCLATSQPLTAFLG*VLYIQF
Trigger: GAACTGGATATACAGGACCCAGCCCAGAAAAGCGGT...AAGGGGCTGGGAAGTGGCTAAGCAACTCATTGGTTCAGGTACTTTAGGGGGCGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000037341.14
CDS-3UTR CCA 90 bp CCGCCCCCTAAAGTACCTGAACCAATGAGTTGCTTAGCCACTTCCCAGCCCCTTGGGACGTACAGCGAATaGGCACTACCATCATCATCT +
Preference number: 4 (lower is better)
Translates to: PPPKVPEPMSCLATSQPLGTYSE*ALPSSS
Trigger: AGATGATGATGGTAGTGCCCATTCGCTGTACGTCCC...AAGGGGCTGGGAAGTGGCTAAGCAACTCATTGGTTCAGGTACTTTAGGGGGCGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGCAGCTTTAGAAGGTGACAGCTGGTGTCCCTaGTTTCCAAGCATTGCCCGG +
Preference number: 4 (lower is better)
Translates to: LPDTVTHCQWPLPAALEGDSWCP*FPSIAR
Trigger: CCGGGCAATGCTTGGAAACCAGGGACACCAGCTGTC...ACCTTCTAAAGCTGCTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGCTTCGGTCTGACAGCTaGTGTCCCTGGTTTCCAAGC +
Preference number: 4 (lower is better)
Translates to: LVWLDFQTLSHIVNGHCQLRSDS*CPWFPS
Trigger: GCTTGGAAACCAGGGACACCAGCTGTCAGACCGAAG...CTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp AAAAGGCCACAGAGACTTCCTAGAGTGATGCACAGCTCACCTTCCTGCCTCACTTCTCGGGCCGGTACGTaGAAGACTGTGGAAACCAGT +
Preference number: 4 (lower is better)
Translates to: KRPQRLPRVMHSSPSCLTSRAGT*KTVETS
Trigger: ACTGGTTTCCACAGTCTTCCACGTACCGGCCCGAGA...AGTGAGGCAGGAAGGTGAGCTGTGCATCACTCTAGGAAGTCTCTGTGGCCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp TGCTTTGGCTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCATCGGTCCGGGATGGTaGCAGGGGTGGTTTCTTTGC +
Preference number: 4 (lower is better)
Translates to: CFGLCGLTSRHCHTLSMAIGPGW*QGWFLC
Trigger: GCAAAGAAACCACCCCTGCCACCATCCCGGACCGAT...GGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp AAAAGGCCACAGAGACTTCCTAGAGTGATGCACAGCTCACCTTCCTGCCTCACTTCGCTAACAATGCTCTaGCTTCTGGACCTGGGGAGC +
Preference number: 4 (lower is better)
Translates to: KRPQRLPRVMHSSPSCLTSLTML*LLDLGS
Trigger: GCTCCCCAGGTCCAGAAGCCAGAGCATTGTTAGCGA...AGTGAGGCAGGAAGGTGAGCTGTGCATCACTCTAGGAAGTCTCTGTGGCCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGCGTTGGGAGTGGTGGTaGAGGTCAAGCTACTACCCT +
Preference number: 4 (lower is better)
Translates to: LVWLDFQTLSHIVNGHCQRWEWW*RSSYYP
Trigger: AGGGTAGTAGCTTGACCTCCACCACCACTCCCAACG...CTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp TGCTTTGGCTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCCTGGATTTCTCCTCTTaGCTCCGCACAGCTTCCCCC +
Preference number: 4 (lower is better)
Translates to: CFGLCGLTSRHCHTLSMALDFSS*LRTASP
Trigger: GGGGGAAGCTGTGCGGAGCCAAGAGGAGAAATCCAG...GGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp AAAAGGCCACAGAGACTTCCTAGAGTGATGCACAGCTCACCTTCCTGCCTCACTAGACCCTACTTGCTTTaGAGAGGCCAGGTTAGGGGC +
Preference number: 4 (lower is better)
Translates to: KRPQRLPRVMHSSPSCLTRPYLL*RGQVRG
Trigger: GCCCCTAACCTGGCCTCTCCAAAGCAAGTAGGGTCT...AGTGAGGCAGGAAGGTGAGCTGTGCATCACTCTAGGAAGTCTCTGTGGCCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp TGCTTTGGCTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCCTCTCCTGTTCTTGTTaGGGGAGCAGCTGGATGGGC +
Preference number: 4 (lower is better)
Translates to: CFGLCGLTSRHCHTLSMALSCSC*GSSWMG
Trigger: GCCCATCCAGCTGCTCCCCCAACAAGAACAGGAGAG...GGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGTCAGGCCTTCGTTCTTaGCCCACTCTTCCTGAGCTC +
Preference number: 4 (lower is better)
Translates to: LVWLDFQTLSHIVNGHCQSGLRS*PTLPEL
Trigger: GAGCTCAGGAAGAGTGGGCCAAGAACGAAGGCCTGA...CTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp CTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGGTCGGAGAAGTCACCTaGGGTTGGCGTTTTAGGTCT +
Preference number: 4 (lower is better)
Translates to: LVWLDFQTLSHIVNGHCQVGEVT*GWRFRS
Trigger: AGACCTAAAACGCCAACCTCAGGTGACTTCTCCGAC...CTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp CCGCCCCCTAAAGTACCTGAACCAATGAGTTGCTTAGCCACTTCCCAGCCCCTTGATGCTAGCTCCTTCTaGATGATGTCAGGGATTCCT +
Preference number: 4 (lower is better)
Translates to: PPPKVPEPMSCLATSQPLDASSF*MMSGIP
Trigger: AGGAATCCCTGACATCATTCAGAAGGAGCTAGCATC...AAGGGGCTGGGAAGTGGCTAAGCAACTCATTGGTTCAGGTACTTTAGGGGGCGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp TGCTTTGGCTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCGCTGTGAAATCTCTCTaGGGAGGTGGTACCACCAGG +
Preference number: 4 (lower is better)
Translates to: CFGLCGLTSRHCHTLSMAAVKSL*GGGTTR
Trigger: CCTGGTGGTACCACCTCCGCAGAGAGATTTCACAGC...GGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTGTCAGCCTGGACCGTCTaGGCTTGCTGCCGCGTCTTC +
Preference number: 4 (lower is better)
Translates to: LKWLSKVLWKKSWMLWLVSAWTV*ACCRVF
Trigger: GAAGACGCGGCAGCAAGCCCAGACGGTCCAGGCTGA...CACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CCCTACCCTTCTCTCACGATGCCTCTCTTCCTTCATTCTTCATTAACAACTCCACCCGGTGGGGTTCCCTaGATCTTCCTGCAAGCTCGT +
Preference number: 4 (lower is better)
Translates to: PYPSLTMPLFLHSSLTTPPGGVP*IFLQAR
Trigger: ACGAGCTTGCAGGAAGATCCAGGGAACCCCACCGGG...TGGAGTTGTTAATGAAGAATGAAGGAAGAGAGGCATCGTGAGAGAAGGGTAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTGTGTTGGGGGAGCAGCTaGATGGGCTGTCCGGGCTGT +
Preference number: 4 (lower is better)
Translates to: LKWLSKVLWKKSWMLWLVCWGSS*MGCPGC
Trigger: ACAGCCCGGACAGCCCATCCAGCTGCTCCCCCAACA...CACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp AAAAGGCCACAGAGACTTCCTAGAGTGATGCACAGCTCACCTTCCTGCCTCACTACATTCCCTCAGCACTaGTTTGAGGTTGAGCTTGGC +
Preference number: 4 (lower is better)
Translates to: KRPQRLPRVMHSSPSCLTTFPQH*FEVELG
Trigger: GCCAAGCTCAACCTCAAATCAGTGCTGAGGGAATGT...AGTGAGGCAGGAAGGTGAGCTGTGCATCACTCTAGGAAGTCTCTGTGGCCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp TGCTTTGGCTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCGTCGGAGAAGTCACCTaGGGTTGGCGTTTTAGGTCT +
Preference number: 4 (lower is better)
Translates to: CFGLCGLTSRHCHTLSMAVGEVT*GWRFRS
Trigger: AGACCTAAAACGCCAACCTCAGGTGACTTCTCCGAC...GGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp CTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGCAGCTTTAGAAGGTACCATCATGGTCCTCTaGACACAGGGACCTGGTATC +
Preference number: 4 (lower is better)
Translates to: LPDTVTHCQWPLPAALEGTIMVL*TQGPGI
Trigger: GATACCAGGTCCCTGTGTTCAGAGGACCATGATGGT...ACCTTCTAAAGCTGCTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp CTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGCAGCTTTAGAAGGTCGATCAGGCTCTCATTaGGCACCTGACCGTTTGTCT +
Preference number: 4 (lower is better)
Translates to: LPDTVTHCQWPLPAALEGRSGSH*APDRLS
Trigger: AGACAAACGGTCAGGTGCTCAATGAGAGCCTGATCG...ACCTTCTAAAGCTGCTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp CTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGCAGCTTTAGAAGGTTTGGCCCACTCTTCCTaGGCTCTCCTGTTCTTGTTG +
Preference number: 4 (lower is better)
Translates to: LPDTVTHCQWPLPAALEGLAHSS*ALLFLL
Trigger: CAACAAGAACAGGAGAGCTCAGGAAGAGTGGGCCAA...ACCTTCTAAAGCTGCTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp CCACCCATGCTTCTGACACCAAGGCTAGAAATGTATGCAGTAGGCACAGGACACGACGCACCTCCTAAATaGGCAAAGTTTTCATGCCCC +
Preference number: 4 (lower is better)
Translates to: PPMLLTPRLEMYAVGTGHDAPPK*AKFSCP
Trigger: GGGGCATGAAAACTTTGCGCATTTAGGAGGTGCGTC...GTGTCCTGTGCCTACTGCATACATTTCTAGCCTTGGTGTCAGAAGCATGGGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp CTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGCAGCTTTAGAAGGTGGTCCAAACTGCAGCTaGTCACGTTACTTGTGGGAG +
Preference number: 4 (lower is better)
Translates to: LPDTVTHCQWPLPAALEGGPNCS*SRYLWE
Trigger: CTCCCACAAGTAACGTGAGCAGCTGCAGTTTGGACC...ACCTTCTAAAGCTGCTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CTCCTCAGAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGTCAGCCTGGACCGTCTaGGCTTGCTGCCGCGTCTTC +
Preference number: 4 (lower is better)
Translates to: LLRDVSEMAIKGSVEEVLSAWTV*ACCRVF
Trigger: GAAGACGCGGCAGCAAGCCCAGACGGTCCAGGCTGA...CAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTCTGAGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CCACCCATGCTTCTGACACCAAGGCTAGAAATGTATGCAGTAGGCACAGGACACGGGACGTACAGCGAATaGGCACTACCATCATCATCT +
Preference number: 4 (lower is better)
Translates to: PPMLLTPRLEMYAVGTGHGTYSE*ALPSSS
Trigger: AGATGATGATGGTAGTGCCCATTCGCTGTACGTCCC...GTGTCCTGTGCCTACTGCATACATTTCTAGCCTTGGTGTCAGAAGCATGGGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp AAAAGGCCACAGAGACTTCCTAGAGTGATGCACAGCTCACCTTCCTGCCTCACTGAGACCTCTGAATCATaGAGGGATAACAGCGTGGTG +
Preference number: 4 (lower is better)
Translates to: KRPQRLPRVMHSSPSCLTETSES*RDNSVV
Trigger: CACCACGCTGTTATCCCTCCATGATTCAGAGGTCTC...AGTGAGGCAGGAAGGTGAGCTGTGCATCACTCTAGGAAGTCTCTGTGGCCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp AAAAGGCCACAGAGACTTCCTAGAGTGATGCACAGCTCACCTTCCTGCCTCACTCCCTTGAGAGATGTTTaGTCCAAACTGCAGCTGCTC +
Preference number: 4 (lower is better)
Translates to: KRPQRLPRVMHSSPSCLTPLRDV*SKLQLL
Trigger: GAGCAGCTGCAGTTTGGACCAAACATCTCTCAAGGG...AGTGAGGCAGGAAGGTGAGCTGTGCATCACTCTAGGAAGTCTCTGTGGCCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp AAAAGGCCACAGAGACTTCCTAGAGTGATGCACAGCTCACCTTCCTGCCTCACTAATACACGTTGGGAGTaGTGGTGGAGGTCAAGCTAC +
Preference number: 4 (lower is better)
Translates to: KRPQRLPRVMHSSPSCLTNTRWE*WWRSSY
Trigger: GTAGCTTGACCTCCACCACCACTCCCAACGTGTATT...AGTGAGGCAGGAAGGTGAGCTGTGCATCACTCTAGGAAGTCTCTGTGGCCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CCACCCATGCTTCTGACACCAAGGCTAGAAATGTATGCAGTAGGCACAGGACACTTCTTTCTGGTACCTTaGGCTTGGCCTTCCCCTTTC +
Preference number: 4 (lower is better)
Translates to: PPMLLTPRLEMYAVGTGHFFLVP*AWPSPF
Trigger: GAAAGGGGAAGGCCAAGCCCAAGGTACCAGAAAGAA...GTGTCCTGTGCCTACTGCATACATTTCTAGCCTTGGTGTCAGAAGCATGGGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTGCCTGACTCTGGCTCTTaGCAGGCATCGGAAGCGAGC +
Preference number: 4 (lower is better)
Translates to: LKWLSKVLWKKSWMLWLVPDSGS*QASEAS
Trigger: GCTCGCTTCCGATGCCTGCCAAGAGCCAGAGTCAGG...CACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp GAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGCTGTACCTGCTGCTaGCCGCAGAGGGTGGCGTCC +
Preference number: 4 (lower is better)
Translates to: EMYLKWLSKVLWKKSWMLCCTCC*PQRVAS
Trigger: GGACGCCACCCTCTGCGGCCAGCAGCAGGTACAGCA...AAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTGGTCATGGGGCTGCTCTaGATGCGGTTCCGCATGCTG +
Preference number: 4 (lower is better)
Translates to: LKWLSKVLWKKSWMLWLVVMGLL*MRFRML
Trigger: CAGCATGCGGAACCGCATCCAGAGCAGCCCCATGAC...CACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTGCGCTACAGAGGAGGCTaGCCTGGTCCATCTCCTGAC +
Preference number: 4 (lower is better)
Translates to: LKWLSKVLWKKSWMLWLVRYRGG*PGPSPD
Trigger: GTCAGGAGATGGACCAGGCCAGCCTCCTCTGTAGCG...CACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR CAA 72 bp GGCTTGTGTGGCTTGACTTCCAGACACTGTCACACATaGTCAATGGCCACTGCCAGCAGCTTTAGAAGGTCA +
Preference number: 4 (lower is better)
Translates to: GLCGLTSRHCHT*SMATASSFRRS
Trigger: TGACCTTCTAAAGCTGCTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp CCCTACCCTTCTCTCACGATGCCTCTCTTCCTTCATTCTTCATTAACAACTCCAACGCCTACCCCCTTGTaGGCCCTGATCCTTCTCATT +
Preference number: 4 (lower is better)
Translates to: PYPSLTMPLFLHSSLTTPTPTPL*ALILLI
Trigger: AATGAGAAGGATCAGGGCTCACAAGGGGGTAGGCGT...TGGAGTTGTTAATGAAGAATGAAGGAAGAGAGGCATCGTGAGAGAAGGGTAGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp CTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGTCGTTGTTCCTGAGCTaGTGGTTCAGAAAACAGGAC +
Preference number: 4 (lower is better)
Translates to: LVWLDFQTLSHIVNGHCQSLFLS*WFRKQD
Trigger: GTCCTGTTTTCTGAACCATCAGCTCAGGAACAACGA...CTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp CTCCTCAGAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGCACACTGTTCTCGCCTaGCTCTTCCTGTGTGGGGCC +
Preference number: 4 (lower is better)
Translates to: LLRDVSEMAIKGSVEEVLHTVLA*LFLCGA
Trigger: GGCCCCACACAGGAAGAGTCAGGCGAGAACAGTGTG...CAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTCTGAGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp CTCCTCAGAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGCCTGGTCCATCTCCTaGCCCGTCAGTCTGTCCAGA +
Preference number: 4 (lower is better)
Translates to: LLRDVSEMAIKGSVEEVLAWSIS*PVSLSR
Trigger: TCTGGACAGACTGACGGGTCAGGAGATGGACCAGGC...CAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTCTGAGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp TCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTAGCTTGGCTTGGCGGTaGAGGTCCTCAACACAGGGG +
Preference number: 4 (lower is better)
Translates to: SEMAIKGSVEEVLDALACSLAWR*RSSTQG
Trigger: CCCCTGTGTTGAGGACCTGCACCGCCAAGCCAAGCT...ACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp CTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTGACCGTCTGGGCTTGCTaGCGCGTCTTCTCTTCTGGT +
Preference number: 4 (lower is better)
Translates to: LKWLSKVLWKKSWMLWLVTVWAC*RVFSSG
Trigger: ACCAGAAGAGAAGACGCGGCAGCAAGCCCAGACGGT...CACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp TGCTTTGGCTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCTCAGCACAGACATGTTaGCTGAGGAACCTGAGAGGT +
Preference number: 4 (lower is better)
Translates to: CFGLCGLTSRHCHTLSMASAQTC*LRNLRG
Trigger: ACCTCTCAGGTTCCTCAGGCAACATGTCTGTGCTGA...GGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp TGCTTTGGCTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCGACGCACCTCCTAAATaGGCAAAGTTTTCATGCCCC +
Preference number: 4 (lower is better)
Translates to: CFGLCGLTSRHCHTLSMADAPPK*AKFSCP
Trigger: GGGGCATGAAAACTTTGCGCATTTAGGAGGTGCGTC...GGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp CCACCCATGCTTCTGACACCAAGGCTAGAAATGTATGCAGTAGGCACAGGACACTCCAAAAACCTCAACTaGTGGGATTTGGGCCTCGAA +
Preference number: 4 (lower is better)
Translates to: PPMLLTPRLEMYAVGTGHSKNLN*WDLGLE
Trigger: TTCGAGGCCCAAATCCCAGCAGTTGAGGTTTTTGGA...GTGTCCTGTGCCTACTGCATACATTTCTAGCCTTGGTGTCAGAAGCATGGGTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp CTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGCAGCTTTAGAAGGTACTGTCCAGCTGTCCTaGACTCTGAGCAGTGTGAAT +
Preference number: 4 (lower is better)
Translates to: LPDTVTHCQWPLPAALEGTVQLS*TLSSVN
Trigger: ATTCACACTGCTCAGAGTGCAGGACAGCTGGACAGT...ACCTTCTAAAGCTGCTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp CCGCCCCCTAAAGTACCTGAACCAATGAGTTGCTTAGCCACTTCCCAGCCCCTTAGATCTGTGAATGGCTaGAAACAGGTCTTCTGTTGT +
Preference number: 4 (lower is better)
Translates to: PPPKVPEPMSCLATSQPLRSVNG*KQVFCC
Trigger: ACAACAGAAGACCTGTTTGCAGCCATTCACAGATCT...AAGGGGCTGGGAAGTGGCTAAGCAACTCATTGGTTCAGGTACTTTAGGGGGCGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp GAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTCCGCATGCTGTACCTaGTGCTGGCCGCAGAGGGTG +
Preference number: 4 (lower is better)
Translates to: EMYLKWLSKVLWKKSWMLSACCT*CWPQRV
Trigger: CACCCTCTGCGGCCAGCAGCAGGTACAGCATGCGGA...AAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp GAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTGGATGCGGTTCCGCATaGTGTACCTGCTGCTGGCCG +
Preference number: 4 (lower is better)
Translates to: EMYLKWLSKVLWKKSWMLGCGSA*CTCCWP
Trigger: CGGCCAGCAGCAGGTACAGCATGCGGAACCGCATCC...AAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGCTACCATCATCATCTTaGCCAGTGGCTGATGCAGTT +
Preference number: 4 (lower is better)
Translates to: LVWLDFQTLSHIVNGHCQLPSSS*PVADAV
Trigger: AACTGCATCAGCCACTGGCCAAGATGATGATGGTAG...CTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037341.14
CDS-3UTR CCA 90 bp CTCCTCAGAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGGGATAACAGCGTGGTaGCACCAGGGACAGAGGAGG +
Preference number: 4 (lower is better)
Translates to: LLRDVSEMAIKGSVEEVLGITAW*HQGQRR
Trigger: CCTCCTCTGTCCCTGGTGCCACCACGCTGTTATCCC...CAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTCTGAGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CTCCTCAGAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGCAGGTGTGGCTTCAGTaGGGATGCCCGCCCATTGCT +
Preference number: 4 (lower is better)
Translates to: LLRDVSEMAIKGSVEEVLQVWLQ*GCPPIA
Trigger: AGCAATGGGCGGGCATCCCCACTGAAGCCACACCTG...CAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTCTGAGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTGCTGGATGTGGCGTACTaGCCCGTTTCCAGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: LKWLSKVLWKKSWMLWLVLDVAY*PVSSCC
Trigger: GCAGCAACTGGAAACGGGCCAGTACGCCACATCCAG...CACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp GAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTAGGGCTGGGCACGCCTaGGAAAGCTTCGCTCCCGTT +
Preference number: 4 (lower is better)
Translates to: EMYLKWLSKVLWKKSWMLRAGHA*ESFAPV
Trigger: AACGGGAGCGAAGCTTTCCCAGGCGTGCCCAGCCCT...AAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTGCTCTCCTGTTCTTGTTaGGGGAGCAGCTGGATGGGC +
Preference number: 4 (lower is better)
Translates to: LKWLSKVLWKKSWMLWLVLSCSC*GSSWMG
Trigger: GCCCATCCAGCTGCTCCCCCAACAAGAACAGGAGAG...CACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp CTCCTCAGAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGCGCTCTGGGACGGAGTaGCCCCACACAGAGAATACA +
Preference number: 4 (lower is better)
Translates to: LLRDVSEMAIKGSVEEVLRSGTE*PHTENT
Trigger: TGTATTCTCTGTGTGGGGTCACTCCGTCCCAGAGCG...CAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTCTGAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp CTCCTCAGAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGTGGCTTCCTGCTGGGTaGAGAGTCTGGGAGCAGAGT +
Preference number: 4 (lower is better)
Translates to: LLRDVSEMAIKGSVEEVLWLPAG*RVWEQS
Trigger: ACTCTGCTCCCAGACTCTTCACCCAGCAGGAAGCCA...CAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTCTGAGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp GAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTCTGTGGGCTCCGCTGTaGAATCTCTCTGCGGAGGTG +
Preference number: 4 (lower is better)
Translates to: EMYLKWLSKVLWKKSWMLLWAPL*NLSAEV
Trigger: CACCTCCGCAGAGAGATTTCACAGCGGAGCCCACAG...AAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp AAAAGGCCACAGAGACTTCCTAGAGTGATGCACAGCTCACCTTCCTGCCTCACTGTACGTGGAAGACTGTaGAAACCAGTATCGTTACTG +
Preference number: 4 (lower is better)
Translates to: KRPQRLPRVMHSSPSCLTVRGRL*KPVSLL
Trigger: CAGTAACGATACTGGTTTCCACAGTCTTCCACGTAC...AGTGAGGCAGGAAGGTGAGCTGTGCATCACTCTAGGAAGTCTCTGTGGCCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CCGCCCCCTAAAGTACCTGAACCAATGAGTTGCTTAGCCACTTCCCAGCCCCTTGTGGTCAGGAAAGCTTaGGTTGTTTCTACAATGATA +
Preference number: 4 (lower is better)
Translates to: PPPKVPEPMSCLATSQPLVVRKA*VVSTMI
Trigger: TATCATTGTAGAAACAACCCAAGCTTTCCTGACCAC...AAGGGGCTGGGAAGTGGCTAAGCAACTCATTGGTTCAGGTACTTTAGGGGGCGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp GAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTCCCGGTGGGGTTCCCTaGATCTTCCTGCAAGCTCGT +
Preference number: 4 (lower is better)
Translates to: EMYLKWLSKVLWKKSWMLPGGVP*IFLQAR
Trigger: ACGAGCTTGCAGGAAGATCCAGGGAACCCCACCGGG...AAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp TGCTTTGGCTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCGTGGGTGTATTCGACTaGCTAGAATACCCACTGGAT +
Preference number: 4 (lower is better)
Translates to: CFGLCGLTSRHCHTLSMAVGVFD*LEYPLD
Trigger: ATCCAGTGGGTATTCTAGCCAGTCGAATACACCCAC...GGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CCACCCATGCTTCTGACACCAAGGCTAGAAATGTATGCAGTAGGCACAGGACACAGACGATTTTCTTTCTaGTACCTTGGGCTTGGCCTT +
Preference number: 4 (lower is better)
Translates to: PPMLLTPRLEMYAVGTGHRRFSF*YLGLGL
Trigger: AAGGCCAAGCCCAAGGTACCAGAAAGAAAATCGTCT...GTGTCCTGTGCCTACTGCATACATTTCTAGCCTTGGTGTCAGAAGCATGGGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp TCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTAAAGGCACCCGTCGGTaGGGGAGCAGAAGGGAACAA +
Preference number: 4 (lower is better)
Translates to: SEMAIKGSVEEVLDALACKGTRR*GSRREQ
Trigger: TTGTTCCCTTCTGCTCCCCCACCGACGGGTGCCTTT...ACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CTCCTCAGAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGCTGGATTTCTCCTCTTaGCTCCGCACAGCTTCCCCC +
Preference number: 4 (lower is better)
Translates to: LLRDVSEMAIKGSVEEVLLDFSS*LRTASP
Trigger: GGGGGAAGCTGTGCGGAGCCAAGAGGAGAAATCCAG...CAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTCTGAGGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp TTTCTTTGGTATAGCCAAAAGTTAGAAAATGCCAGGTGTCACATTTCAAGTGACTGCTGTACCTGCTGCTaGCCGCAGAGGGTGGCGTCC +
Preference number: 4 (lower is better)
Translates to: FLWYSQKLENARCHISSDCCTCC*PQRVAS
Trigger: GGACGCCACCCTCTGCGGCCAGCAGCAGGTACAGCA...GTCACTTGAAATGTGACACCTGGCATTTTCTAACTTTTGGCTATACCAAAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp TCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTCCCCCTTGTGAGCCCTaGTCCTTCTCATTGATGGTG +
Preference number: 4 (lower is better)
Translates to: SEMAIKGSVEEVLDALACPPCEP*SFSLMV
Trigger: CACCATCAATGAGAAGGATCAGGGCTCACAAGGGGG...ACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp CTCCTCAGAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGACGCCTACCCCCTTGTaGGCCCTGATCCTTCTCATT +
Preference number: 4 (lower is better)
Translates to: LLRDVSEMAIKGSVEEVLTPTPL*ALILLI
Trigger: AATGAGAAGGATCAGGGCTCACAAGGGGGTAGGCGT...CAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTCTGAGGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp CCCTACCCTTCTCTCACGATGCCTCTCTTCCTTCATTCTTCATTAACAACTCCAACTGTCCAGCTGTCCTaGACTCTGAGCAGTGTGAAT +
Preference number: 4 (lower is better)
Translates to: PYPSLTMPLFLHSSLTTPTVQLS*TLSSVN
Trigger: ATTCACACTGCTCAGAGTGCAGGACAGCTGGACAGT...TGGAGTTGTTAATGAAGAATGAAGGAAGAGAGGCATCGTGAGAGAAGGGTAGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp TCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTGCTGTGAAATCTCTCTaGGGAGGTGGTACCACCAGG +
Preference number: 4 (lower is better)
Translates to: SEMAIKGSVEEVLDALACAVKSL*GGGTTR
Trigger: CCTGGTGGTACCACCTCCGCAGAGAGATTTCACAGC...ACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp AAAAGGCCACAGAGACTTCCTAGAGTGATGCACAGCTCACCTTCCTGCCTCACTAGATCTGTGAATGGCTaGAAACAGGTCTTCTGTTGT +
Preference number: 4 (lower is better)
Translates to: KRPQRLPRVMHSSPSCLTRSVNG*KQVFCC
Trigger: ACAACAGAAGACCTGTTTGCAGCCATTCACAGATCT...AGTGAGGCAGGAAGGTGAGCTGTGCATCACTCTAGGAAGTCTCTGTGGCCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp ATGCCTCTCTTCCTTCATTCTTCATTAACAACTCCAGGAAGGAATTCATTTAAAGCATGCTGTACCTGCTaGTGGCCGCAGAGGGTGGCG +
Preference number: 4 (lower is better)
Translates to: MPLFLHSSLTTPGRNSFKACCTC*WPQRVA
Trigger: CGCCACCCTCTGCGGCCAGCAGCAGGTACAGCATGC...TTTAAATGAATTCCTTCCTGGAGTTGTTAATGAAGAATGAAGGAAGAGAGGCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp TTTCTTTGGTATAGCCAAAAGTTAGAAAATGCCAGGTGTCACATTTCAAGTGACTCCGCATGCTGTACCTaGTGCTGGCCGCAGAGGGTG +
Preference number: 4 (lower is better)
Translates to: FLWYSQKLENARCHISSDSACCT*CWPQRV
Trigger: CACCCTCTGCGGCCAGCAGCAGGTACAGCATGCGGA...GTCACTTGAAATGTGACACCTGGCATTTTCTAACTTTTGGCTATACCAAAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp TCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTCTTCTCTTCTGGTGTTaGCAGCGGCAGGGACTTGGT +
Preference number: 4 (lower is better)
Translates to: SEMAIKGSVEEVLDALACLLFWC*QRQGLG
Trigger: ACCAAGTCCCTGCCGCTGCCAACACCAGAAGAGAAG...ACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGCATCATCTTGGCCAGTaGCTGATGCAGTTATGTTTA +
Preference number: 4 (lower is better)
Translates to: LVWLDFQTLSHIVNGHCQHHLGQ*LMQLCL
Trigger: TAAACATAACTGCATCAGCCACTGGCCAAGATGATG...CTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037341.14
CDS-3UTR CCA 90 bp CTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGCAGCTTTAGAAGGTGTACGTGGAAGACTGTaGAAACCAGTATCGTTACTG +
Preference number: 4 (lower is better)
Translates to: LPDTVTHCQWPLPAALEGVRGRL*KPVSLL
Trigger: CAGTAACGATACTGGTTTCCACAGTCTTCCACGTAC...ACCTTCTAAAGCTGCTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CCCTACCCTTCTCTCACGATGCCTCTCTTCCTTCATTCTTCATTAACAACTCCAGAGACCTCTGAATCATaGAGGGATAACAGCGTGGTG +
Preference number: 4 (lower is better)
Translates to: PYPSLTMPLFLHSSLTTPETSES*RDNSVV
Trigger: CACCACGCTGTTATCCCTCCATGATTCAGAGGTCTC...TGGAGTTGTTAATGAAGAATGAAGGAAGAGAGGCATCGTGAGAGAAGGGTAGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp GAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTAGCTGCAGTGAATGCTaGAGCGAGGCGATCAGGCTC +
Preference number: 4 (lower is better)
Translates to: EMYLKWLSKVLWKKSWMLSCSEC*SEAIRL
Trigger: GAGCCTGATCGCCTCGCTCCAGCATTCACTGCAGCT...AAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CTCCTCAGAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGCGTTGGGAGTGGTGGTaGAGGTCAAGCTACTACCCT +
Preference number: 4 (lower is better)
Translates to: LLRDVSEMAIKGSVEEVLRWEWW*RSSYYP
Trigger: AGGGTAGTAGCTTGACCTCCACCACCACTCCCAACG...CAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTCTGAGGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp GAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTCTGGATGTGGCGTACTaGCCCGTTTCCAGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: EMYLKWLSKVLWKKSWMLLDVAY*PVSSCC
Trigger: GCAGCAACTGGAAACGGGCCAGTACGCCACATCCAG...AAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp TGCTTTGGCTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCAGACGATTTTCTTTCTaGTACCTTGGGCTTGGCCTT +
Preference number: 4 (lower is better)
Translates to: CFGLCGLTSRHCHTLSMARRFSF*YLGLGL
Trigger: AAGGCCAAGCCCAAGGTACCAGAAAGAAAATCGTCT...GGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CTCCTCAGAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGAAAGGTGGAGGTGCTaGCACAGGAGGCAAGGATCT +
Preference number: 4 (lower is better)
Translates to: LLRDVSEMAIKGSVEEVLERWRC*HRRQGS
Trigger: AGATCCTTGCCTCCTGTGCCAGCACCTCCACCTTTC...CAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTCTGAGGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CCCTACCCTTCTCTCACGATGCCTCTCTTCCTTCATTCTTCATTAACAACTCCAGTCACAGAGGCAGCCTaGCTTTCACTCTCCATTTCA +
Preference number: 4 (lower is better)
Translates to: PYPSLTMPLFLHSSLTTPVTEAA*LSLSIS
Trigger: TGAAATGGAGAGTGAAAGCCAGGCTGCCTCTGTGAC...TGGAGTTGTTAATGAAGAATGAAGGAAGAGAGGCATCGTGAGAGAAGGGTAGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CCCTACCCTTCTCTCACGATGCCTCTCTTCCTTCATTCTTCATTAACAACTCCACATCATCTTGGCCAGTaGCTGATGCTAGCTCCTTCT +
Preference number: 4 (lower is better)
Translates to: PYPSLTMPLFLHSSLTTPHHLGQ*LMLAPS
Trigger: AGAAGGAGCTAGCATCAGCCACTGGCCAAGATGATG...TGGAGTTGTTAATGAAGAATGAAGGAAGAGAGGCATCGTGAGAGAAGGGTAGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp GAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTCCCCCTTGTGAGCCCTaGTCCTTCTCATTGATGGTG +
Preference number: 4 (lower is better)
Translates to: EMYLKWLSKVLWKKSWMLPPCEP*SFSLMV
Trigger: CACCATCAATGAGAAGGATCAGGGCTCACAAGGGGG...AAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp CTCCTCAGAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGTAGGCTGCATGAGGTaGAACCACACATGCTGGACT +
Preference number: 4 (lower is better)
Translates to: LLRDVSEMAIKGSVEEVLVGCMR*NHTCWT
Trigger: AGTCCAGCATGTGTGGTTTCACCTCATGCAGCCTAC...CAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTCTGAGGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp GAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTCCCCAAGCCATCACTaGGAGTGTACAGGTTCCCAG +
Preference number: 4 (lower is better)
Translates to: EMYLKWLSKVLWKKSWMLSPSHH*ECTGSQ
Trigger: CTGGGAACCTGTACACTCTCAGTGATGGCTTGGGGA...AAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp CTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTGGCAGATGGCTTTAAGTaGTACTGTGGAGCAGTCGGA +
Preference number: 4 (lower is better)
Translates to: LKWLSKVLWKKSWMLWLVADGFK*YCGAVG
Trigger: TCCGACTGCTCCACAGTATCACTTAAAGCCATCTGC...CACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp TTTCTTTGGTATAGCCAAAAGTTAGAAAATGCCAGGTGTCACATTTCAAGTGACCACACTGTTCTCGCCTaGCTCTTCCTGTGTGGGGCC +
Preference number: 4 (lower is better)
Translates to: FLWYSQKLENARCHISSDHTVLA*LFLCGA
Trigger: GGCCCCACACAGGAAGAGTCAGGCGAGAACAGTGTG...GTCACTTGAAATGTGACACCTGGCATTTTCTAACTTTTGGCTATACCAAAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp ATGCCTCTCTTCCTTCATTCTTCATTAACAACTCCAGGAAGGAATTCATTTAAACCTCTCCCTCGGAGATaGCGGTCATGGGGCTGCTCT +
Preference number: 4 (lower is better)
Translates to: MPLFLHSSLTTPGRNSFKPLPRR*RSWGCS
Trigger: AGAGCAGCCCCATGACCGTCATCTCCGAGGGAGAGG...TTTAAATGAATTCCTTCCTGGAGTTGTTAATGAAGAATGAAGGAAGAGAGGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp AAAAGGCCACAGAGACTTCCTAGAGTGATGCACAGCTCACCTTCCTGCCTCACTTTGTCTTTCTCCTTTTaGCTTTCTTCGGTCGTCTTA +
Preference number: 4 (lower is better)
Translates to: KRPQRLPRVMHSSPSCLTLSFSF*LSSVVL
Trigger: TAAGACGACCGAAGAAAGTCAAAAGGAGAAAGACAA...AGTGAGGCAGGAAGGTGAGCTGTGCATCACTCTAGGAAGTCTCTGTGGCCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp CCACCCATGCTTCTGACACCAAGGCTAGAAATGTATGCAGTAGGCACAGGACACGATGTCAGGGATTCCTaGAATTGTCTTTCTCCTTTT +
Preference number: 4 (lower is better)
Translates to: PPMLLTPRLEMYAVGTGHDVRDS*NCLSPF
Trigger: AAAAGGAGAAAGACAATTTCAGGAATCCCTGACATC...GTGTCCTGTGCCTACTGCATACATTTCTAGCCTTGGTGTCAGAAGCATGGGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp TCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTCTTCGGCAGCCATCTTaGCTCAGCTTGTCACATTCC +
Preference number: 4 (lower is better)
Translates to: SEMAIKGSVEEVLDALACLRQPS*LSLSHS
Trigger: GGAATGTGACAAGCTGAGGCAAGATGGCTGCCGAAG...ACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp GAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTCAAGAAAGGTGGAGGTaGTGGCACAGGAGGCAAGGA +
Preference number: 4 (lower is better)
Translates to: EMYLKWLSKVLWKKSWMLQERWR*WHRRQG
Trigger: TCCTTGCCTCCTGTGCCAGCACCTCCACCTTTCTTG...AAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp CCCTACCCTTCTCTCACGATGCCTCTCTTCCTTCATTCTTCATTAACAACTCCATGGATAGACCCTACTTaGTTTGGAGAGGCCAGGTTA +
Preference number: 4 (lower is better)
Translates to: PYPSLTMPLFLHSSLTTPWIDPT*FGEARL
Trigger: TAACCTGGCCTCTCCAAAGCAAGTAGGGTCTATCCA...TGGAGTTGTTAATGAAGAATGAAGGAAGAGAGGCATCGTGAGAGAAGGGTAGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp ATGCCTCTCTTCCTTCATTCTTCATTAACAACTCCAGGAAGGAATTCATTTAAAGGAACCACGTCAGCCTaGACCGTCTGGGCTTGCTGC +
Preference number: 4 (lower is better)
Translates to: MPLFLHSSLTTPGRNSFKGTTSA*TVWACC
Trigger: GCAGCAAGCCCAGACGGTCCAGGCTGACGTGGTTCC...TTTAAATGAATTCCTTCCTGGAGTTGTTAATGAAGAATGAAGGAAGAGAGGCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CTCCTCAGAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGTCAACTGCTGGGATTTaGGCCTCGAAAGCATCCCAG +
Preference number: 4 (lower is better)
Translates to: LLRDVSEMAIKGSVEEVLSTAGI*ASKASQ
Trigger: CTGGGATGCTTTCGAGGCCCAAATCCCAGCAGTTGA...CAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTCTGAGGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp TTTCTTTGGTATAGCCAAAAGTTAGAAAATGCCAGGTGTCACATTTCAAGTGACGGGATAACAGCGTGGTaGCACCAGGGACAGAGGAGG +
Preference number: 4 (lower is better)
Translates to: FLWYSQKLENARCHISSDGITAW*HQGQRR
Trigger: CCTCCTCTGTCCCTGGTGCCACCACGCTGTTATCCC...GTCACTTGAAATGTGACACCTGGCATTTTCTAACTTTTGGCTATACCAAAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
3UTR CAA 72 bp CAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTaGTGTGGCTTGACTTCCAGACACTGTCACACATTG +
Preference number: 4 (lower is better)
Translates to: QRFCGRSLGCFG*CGLTSRHCHTL
Trigger: CAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp GAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTACCATCATGGTCCTCTaGACACAGGGACCTGGTATC +
Preference number: 4 (lower is better)
Translates to: EMYLKWLSKVLWKKSWMLTIMVL*TQGPGI
Trigger: GATACCAGGTCCCTGTGTTCAGAGGACCATGATGGT...AAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp TTTCTTTGGTATAGCCAAAAGTTAGAAAATGCCAGGTGTCACATTTCAAGTGACACACAGGCACAGGGGTaGGTGCTGTGGGTGTATTCG +
Preference number: 4 (lower is better)
Translates to: FLWYSQKLENARCHISSDTQAQG*VLWVYS
Trigger: CGAATACACCCACAGCACTCACCCCTGTGCCTGTGT...GTCACTTGAAATGTGACACCTGGCATTTTCTAACTTTTGGCTATACCAAAGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp TTTCTTTGGTATAGCCAAAAGTTAGAAAATGCCAGGTGTCACATTTCAAGTGACGAGGGAGCCTGGGCTTaGCTTGATTCCGAAGGAACC +
Preference number: 4 (lower is better)
Translates to: FLWYSQKLENARCHISSDEGAWA*LDSEGT
Trigger: GGTTCCTTCGGAATCAAGGCAAGCCCAGGCTCCCTC...GTCACTTGAAATGTGACACCTGGCATTTTCTAACTTTTGGCTATACCAAAGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037341.14
CDS-3UTR CCA 90 bp GAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTAGCCGGCTGCAAAGGTaGGTCCCTGAGAATAGTACT +
Preference number: 4 (lower is better)
Translates to: EMYLKWLSKVLWKKSWMLSRLQR*VPENST
Trigger: AGTACTATTCTCAGGGACCCACCTTTGCAGCCGGCT...AAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp GAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTCAACTGCTGGGATTTaGGCCTCGAAAGCATCCCAG +
Preference number: 4 (lower is better)
Translates to: EMYLKWLSKVLWKKSWMLSTAGI*ASKASQ
Trigger: CTGGGATGCTTTCGAGGCCCAAATCCCAGCAGTTGA...AAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp TCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTTTCTTTCTGGTACCTTaGGCTTGGCCTTCCCCTTTC +
Preference number: 4 (lower is better)
Translates to: SEMAIKGSVEEVLDALACFFLVP*AWPSPF
Trigger: GAAAGGGGAAGGCCAAGCCCAAGGTACCAGAAAGAA...ACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp ATGCCTCTCTTCCTTCATTCTTCATTAACAACTCCAGGAAGGAATTCATTTAAACCTGACTCTGGCTCTTaGCAGGCATCGGAAGCGAGC +
Preference number: 4 (lower is better)
Translates to: MPLFLHSSLTTPGRNSFKPDSGS*QASEAS
Trigger: GCTCGCTTCCGATGCCTGCCAAGAGCCAGAGTCAGG...TTTAAATGAATTCCTTCCTGGAGTTGTTAATGAAGAATGAAGGAAGAGAGGCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp CTCCTCAGAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGATCTCTCTGCGGAGGTaGTACCACCAGGAACAGTTT +
Preference number: 4 (lower is better)
Translates to: LLRDVSEMAIKGSVEEVLISLRR*YHQEQF
Trigger: AAACTGTTCCTGGTGGTACCACCTCCGCAGAGAGAT...CAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTCTGAGGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp CCCTACCCTTCTCTCACGATGCCTCTCTTCCTTCATTCTTCATTAACAACTCCATCTTTCTTCTTCAGATaGAGAGAGAGAGCACTTTCG +
Preference number: 4 (lower is better)
Translates to: PYPSLTMPLFLHSSLTTPSFFFR*RERALS
Trigger: CGAAAGTGCTCTCTCTCTTCATCTGAAGAAGAAAGA...TGGAGTTGTTAATGAAGAATGAAGGAAGAGAGGCATCGTGAGAGAAGGGTAGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp TCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTACCTGGTATCACCCTTaGGAGATGTTTGGTCCAAAC +
Preference number: 4 (lower is better)
Translates to: SEMAIKGSVEEVLDALACTWYHP*EMFGPN
Trigger: GTTTGGACCAAACATCTCTCAAGGGTGATACCAGGT...ACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp TCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTGGAGTTCGTTGTTCCTaGGCTGATGGTTCAGAAAAC +
Preference number: 4 (lower is better)
Translates to: SEMAIKGSVEEVLDALACGVRCS*ADGSEN
Trigger: GTTTTCTGAACCATCAGCTCAGGAACAACGAACTCC...ACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp GAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTAACAGCCTCTTTGTCTaGCTGGACAGGGAGGAGAAA +
Preference number: 4 (lower is better)
Translates to: EMYLKWLSKVLWKKSWMLNSLFV*LDREEK
Trigger: TTTCTCCTCCCTGTCCAGGCAGACAAAGAGGCTGTT...AAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037341.14
CDS-3UTR GCA 90 bp ATGCCTCTCTTCCTTCATTCTTCATTAACAACTCCAGGAAGGAATTCATTTAAATGGACCGTCTGGGCTTaGTGCCGCGTCTTCTCTTCT +
Preference number: 4 (lower is better)
Translates to: MPLFLHSSLTTPGRNSFKWTVWA*CRVFSS
Trigger: AGAAGAGAAGACGCGGCAGCAAGCCCAGACGGTCCA...TTTAAATGAATTCCTTCCTGGAGTTGTTAATGAAGAATGAAGGAAGAGAGGCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp CCCTACCCTTCTCTCACGATGCCTCTCTTCCTTCATTCTTCATTAACAACTCCACAGGGGTGGTTTCTTTaGTTTCTTCAGAGAGATGTT +
Preference number: 4 (lower is better)
Translates to: PYPSLTMPLFLHSSLTTPQGWFL*FLQRDV
Trigger: AACATCTCTCTGAAGAAAGCAAAGAAACCACCCCTG...TGGAGTTGTTAATGAAGAATGAAGGAAGAGAGGCATCGTGAGAGAAGGGTAGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp TCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTCTCAACTGCACCATCTaGAAAGCTTCTGTGGTGATC +
Preference number: 4 (lower is better)
Translates to: SEMAIKGSVEEVLDALACLNCTI*KASVVI
Trigger: GATCACCACAGAAGCTTTGCAGATGGTGCAGTTGAG...ACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp GAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTCTCCTCGTCCAAGTTaGAAACCGCTTTTCTGGGCT +
Preference number: 4 (lower is better)
Translates to: EMYLKWLSKVLWKKSWMLSPRPS*KPLFWA
Trigger: AGCCCAGAAAAGCGGTTTCCAACTTGGACGAGGAGA...AAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037341.14
CDS-3UTR CCA 90 bp TTTCTTTGGTATAGCCAAAAGTTAGAAAATGCCAGGTGTCACATTTCAAGTGACTCTCGGGCCGGTACGTaGAAGACTGTGGAAACCAGT +
Preference number: 4 (lower is better)
Translates to: FLWYSQKLENARCHISSDSRAGT*KTVETS
Trigger: ACTGGTTTCCACAGTCTTCCACGTACCGGCCCGAGA...GTCACTTGAAATGTGACACCTGGCATTTTCTAACTTTTGGCTATACCAAAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp GAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTCCCTTGAGAGATGTTTaGTCCAAACTGCAGCTGCTC +
Preference number: 4 (lower is better)
Translates to: EMYLKWLSKVLWKKSWMLPLRDV*SKLQLL
Trigger: GAGCAGCTGCAGTTTGGACCAAACATCTCTCAAGGG...AAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp TTTCTTTGGTATAGCCAAAAGTTAGAAAATGCCAGGTGTCACATTTCAAGTGACGAAAGGTGGAGGTGCTaGCACAGGAGGCAAGGATCT +
Preference number: 4 (lower is better)
Translates to: FLWYSQKLENARCHISSDERWRC*HRRQGS
Trigger: AGATCCTTGCCTCCTGTGCCAGCACCTCCACCTTTC...GTCACTTGAAATGTGACACCTGGCATTTTCTAACTTTTGGCTATACCAAAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp ATGCCTCTCTTCCTTCATTCTTCATTAACAACTCCAGGAAGGAATTCATTTAAATTCACGTCTTCGGTCTaGCAGCTGGTGTCCCTGGTT +
Preference number: 4 (lower is better)
Translates to: MPLFLHSSLTTPGRNSFKFTSSV*QLVSLV
Trigger: AACCAGGGACACCAGCTGTCAGACCGAAGACGTGAA...TTTAAATGAATTCCTTCCTGGAGTTGTTAATGAAGAATGAAGGAAGAGAGGCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp TTTCTTTGGTATAGCCAAAAGTTAGAAAATGCCAGGTGTCACATTTCAAGTGACGGTCCAAACTGCAGCTaGTCACGTTACTTGTGGGAG +
Preference number: 4 (lower is better)
Translates to: FLWYSQKLENARCHISSDGPNCS*SRYLWE
Trigger: CTCCCACAAGTAACGTGAGCAGCTGCAGTTTGGACC...GTCACTTGAAATGTGACACCTGGCATTTTCTAACTTTTGGCTATACCAAAGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp ATGCCTCTCTTCCTTCATTCTTCATTAACAACTCCAGGAAGGAATTCATTTAAAGAGACCGCCGAAGGCTaGCCTGACGATCGAAATTCT +
Preference number: 4 (lower is better)
Translates to: MPLFLHSSLTTPGRNSFKETAEG*PDDRNS
Trigger: AGAATTTCGATCGTCAGGCCAGCCTTCGGCGGTCTC...TTTAAATGAATTCCTTCCTGGAGTTGTTAATGAAGAATGAAGGAAGAGAGGCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp ATGCCTCTCTTCCTTCATTCTTCATTAACAACTCCAGGAAGGAATTCATTTAAACTTGCCATCCACATCTaGAGGGTGGTCAGGAAAGCT +
Preference number: 4 (lower is better)
Translates to: MPLFLHSSLTTPGRNSFKLAIHI*RVVRKA
Trigger: AGCTTTCCTGACCACCCTTCAGATGTGGATGGCAAG...TTTAAATGAATTCCTTCCTGGAGTTGTTAATGAAGAATGAAGGAAGAGAGGCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp GAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTATGTTTGGTCCAAACTaGAGCTGCTCACGTTACTTG +
Preference number: 4 (lower is better)
Translates to: EMYLKWLSKVLWKKSWMLMFGPN*SCSRYL
Trigger: CAAGTAACGTGAGCAGCTGCAGTTTGGACCAAACAT...AAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp CTCCTCAGAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGCAGGGGTGGTTTCTTTaGTTTCTTCAGAGAGATGTT +
Preference number: 4 (lower is better)
Translates to: LLRDVSEMAIKGSVEEVLQGWFL*FLQRDV
Trigger: AACATCTCTCTGAAGAAAGCAAAGAAACCACCCCTG...CAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTCTGAGGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp TTTCTTTGGTATAGCCAAAAGTTAGAAAATGCCAGGTGTCACATTTCAAGTGACATCTCTCTGCGGAGGTaGTACCACCAGGAACAGTTT +
Preference number: 4 (lower is better)
Translates to: FLWYSQKLENARCHISSDISLRR*YHQEQF
Trigger: AAACTGTTCCTGGTGGTACCACCTCCGCAGAGAGAT...GTCACTTGAAATGTGACACCTGGCATTTTCTAACTTTTGGCTATACCAAAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp TTTCTTTGGTATAGCCAAAAGTTAGAAAATGCCAGGTGTCACATTTCAAGTGACCTACCATCATCATCTTaGCCAGTGGCTGATGCTAGC +
Preference number: 4 (lower is better)
Translates to: FLWYSQKLENARCHISSDLPSSS*PVADAS
Trigger: GCTAGCATCAGCCACTGGCCAAGATGATGATGGTAG...GTCACTTGAAATGTGACACCTGGCATTTTCTAACTTTTGGCTATACCAAAGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000100054.4
CDS-3UTR TCA 90 bp ATGCCTCTCTTCCTTCATTCTTCATTAACAACTCCAGGAAGGAATTCATTTAAAGATTCCGAAGGAACCTaGGGAGCCGTCCTTTTTCAT +
Preference number: 4 (lower is better)
Translates to: MPLFLHSSLTTPGRNSFKDSEGT*GAVLFH
Trigger: ATGAAAAAGGACGGCTCCTCAGGTTCCTTCGGAATC...TTTAAATGAATTCCTTCCTGGAGTTGTTAATGAAGAATGAAGGAAGAGAGGCAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037341.14
CDS-3UTR TCA 90 bp ATGCCTCTCTTCCTTCATTCTTCATTAACAACTCCAGGAAGGAATTCATTTAAATCCCCTTGGCTTCTCTaGGCCCTTCCATCAAAAACA +
Preference number: 4 (lower is better)
Translates to: MPLFLHSSLTTPGRNSFKSPWLL*ALPSKT
Trigger: TGTTTTTGATGGAAGGGCTCAGAGAAGCCAAGGGGA...TTTAAATGAATTCCTTCCTGGAGTTGTTAATGAAGAATGAAGGAAGAGAGGCAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp TTTCTTTGGTATAGCCAAAAGTTAGAAAATGCCAGGTGTCACATTTCAAGTGACCTCAACTGCACCATCTaGAAAGCTTCTGTGGTGATC +
Preference number: 4 (lower is better)
Translates to: FLWYSQKLENARCHISSDLNCTI*KASVVI
Trigger: GATCACCACAGAAGCTTTGCAGATGGTGCAGTTGAG...GTCACTTGAAATGTGACACCTGGCATTTTCTAACTTTTGGCTATACCAAAGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR GCA 90 bp TTTCTTTGGTATAGCCAAAAGTTAGAAAATGCCAGGTGTCACATTTCAAGTGACTGGATAGACCCTACTTaGTTTGGAGAGGCCAGGTTA +
Preference number: 4 (lower is better)
Translates to: FLWYSQKLENARCHISSDWIDPT*FGEARL
Trigger: TAACCTGGCCTCTCCAAAGCAAGTAGGGTCTATCCA...GTCACTTGAAATGTGACACCTGGCATTTTCTAACTTTTGGCTATACCAAAGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp TCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTTACAATGATAGAGTATaGCTTGGGATCCATTTTCCC +
Preference number: 4 (lower is better)
Translates to: SEMAIKGSVEEVLDALACYNDRV*LGIHFP
Trigger: GGGAAAATGGATCCCAAGCCATACTCTATCATTGTA...ACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CCA 90 bp GAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTGTGGTCAGGAAAGCTTaGGTTGTTTCTACAATGATA +
Preference number: 4 (lower is better)
Translates to: EMYLKWLSKVLWKKSWMLVVRKA*VVSTMI
Trigger: TATCATTGTAGAAACAACCCAAGCTTTCCTGACCAC...AAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS GCA 90 bp CTGCTCCAGCGAGCGGAAGAGCGGCGGGTCCCCAGCCCGAGCCAGTaGCGCCTCGTCGGGCCGGCGCAGCCGTGCGGGCTCTACGCTTCG +
Preference number: 5 (lower is better)
Translates to: LLQRAEERRVPSPSQ*RLVGPAQPCGLYAS
Trigger: CGAAGCGTAGAGCCCGCACGGCTGCGCCGGCCCGACGAGGCGGCACTGGCTCGGGCTGGGGACCCGCCGCTCTTCCGCTCGCTGGAGCAG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207038.2
CDS GCA 90 bp CGGCGGCGGCGTGCAGGGCGTCCAGGCGACGGTGCAACTCGGCGGTaGGGTGACCCAGCGCAGCCGCCTGGCCCTCGAGCTCCCCGAAAA +
Preference number: 5 (lower is better)
Translates to: RRRRAGRPGDGATRR*GDPAQPPGPRAPRK
Trigger: TTTTCGGGGAGCTCGAGGGCCAGGCGGCTGCGCTGGGTCACCGCACCGCCGAGTTGCACCGTCGCCTGGACGCCCTGCACGCCGCCGCCG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207038.2
CDS TCA 90 bp GCGGCGTGCAGGGCGTCCAGGCGACGGTGCAACTCGGCGGTGCGGTaGCCCAGCGCAGCCGCCTGGCCCTCGAGCTCCCCGAAAATGTCC +
Preference number: 5 (lower is better)
Translates to: AACRASRRRCNSAVR*PSAAAWPSSSPKMS
Trigger: GGACATTTTCGGGGAGCTCGAGGGCCAGGCGGCTGCGCTGGGTCACCGCACCGCCGAGTTGCACCGTCGCCTGGACGCCCTGCACGCCGC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207038.2
CDS TCA 90 bp ACAGGTCGGCCAGCTGGGCGAGCAGGCAGACCAGGGTGTGCGAGCTaGCCTGCTCCAGCGAGCGGAAGAGCGGCGGGTCCCCAGCCCGAG +
Preference number: 5 (lower is better)
Translates to: TGRPAGRAGRPGCAS*PAPASGRAAGPQPE
Trigger: CTCGGGCTGGGGACCCGCCGCTCTTCCGCTCGCTGGAGCAGGTCAGCTCGCACACCCTGGTCTGCCTGCTCGCCCAGCTGGCCGACCTGT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207038.2
CDS GCA 90 bp TCGGCCAGCTGGGCGAGCAGGCAGACCAGGGTGTGCGAGCTGACCTaGTCCAGCGAGCGGAAGAGCGGCGGGTCCCCAGCCCGAGCCAGT +
Preference number: 5 (lower is better)
Translates to: SASWASRQTRVCELT*SSERKSGGSPARAS
Trigger: ACTGGCTCGGGCTGGGGACCCGCCGCTCTTCCGCTCGCTGGAGCAGGTCAGCTCGCACACCCTGGTCTGCCTGCTCGCCCAGCTGGCCGA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207038.2
CDS GCA 90 bp CAGCGCGACAGGTCGGCCAGCTGGGCGAGCAGGCAGACCAGGGTGTaGGAGCTGACCTGCTCCAGCGAGCGGAAGAGCGGCGGGTCCCCA +
Preference number: 5 (lower is better)
Translates to: QRDRSASWASRQTRV*ELTCSSERKSGGSP
Trigger: TGGGGACCCGCCGCTCTTCCGCTCGCTGGAGCAGGTCAGCTCGCACACCCTGGTCTGCCTGCTCGCCCAGCTGGCCGACCTGTCGCGCTG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207038.2
CDS GCA 90 bp CGGTCATGGGGCTGCTCTGGATGCGGTTCCGCATGCTGTACCTGCTaGTGGCCGCAGAGGGTGGCGTCCTGCTGCGGCTGTACCGAGGGC +
Preference number: 5 (lower is better)
Translates to: RSWGCSGCGSACCTC*WPQRVASCCGCTEG
Trigger: GCCCTCGGTACAGCCGCAGCAGGACGCCACCCTCTGCGGCCAGCAGCAGGTACAGCATGCGGAACCGCATCCAGAGCAGCCCCATGACCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS-3UTR CAA 90 bp ACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTCCGTTGCTGCCTCAGTGTaGGCTGAGCAGCCCCCGGTG +
Preference number: 5 (lower is better)
Translates to: TSGGGGGGGGGGSCTKASVAASV*AEQPPV
Trigger: CACCGGGGGCTGCTCAGCCAACACTGAGGCAGCAAC...GGAGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp ACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTCCAGGGCCCTGCGTGCTTaGTTGTCCGCTGGCTCAGCA +
Preference number: 5 (lower is better)
Translates to: TSGGGGGGGGGGSCTKASRALRA*LSAGSA
Trigger: TGCTGAGCCAGCGGACAACAAAGCACGCAGGGCCCT...GGAGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS GCA 90 bp GGTTCCGCATGCTGTACCTGCTGCTGGCCGCAGAGGGTGGCGTCCTaGTGCGGCTGTACCGAGGGCCCGAAAAGGACAGACTCCGAGGCA +
Preference number: 5 (lower is better)
Translates to: GSACCTCCWPQRVAS*CGCTEGPKRTDSEA
Trigger: TGCCTCGGAGTCTGTCCTTTTCGGGCCCTCGGTACAGCCGCAGCAGGACGCCACCCTCTGCGGCCAGCAGCAGGTACAGCATGCGGAACC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS-3UTR CAA 90 bp ACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTCCGAGGTTGAGCTTGGCTaGGCGGTGCAGGTCCTCAAC +
Preference number: 5 (lower is better)
Translates to: TSGGGGGGGGGGSCTKASEVELG*AVQVLN
Trigger: GTTGAGGACCTGCACCGCCAAGCCAAGCTCAACCTC...GGAGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS GCA 90 bp TCCGCATGCTGTACCTGCTGCTGGCCGCAGAGGGTGGCGTCCTGCTaGGGCTGTACCGAGGGCCCGAAAAGGACAGACTCCGAGGCATCA +
Preference number: 5 (lower is better)
Translates to: SACCTCCWPQRVASC*GCTEGPKRTDSEAS
Trigger: TGATGCCTCGGAGTCTGTCCTTTTCGGGCCCTCGGTACAGCCGCAGCAGGACGCCACCCTCTGCGGCCAGCAGCAGGTACAGCATGCGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CCA 90 bp CTGGATGCGGTTCCGCATGCTGTACCTGCTGCTGGCCGCAGAGGGTaGCGTCCTGCTGCGGCTGTACCGAGGGCCCGAAAAGGACAGACT +
Preference number: 5 (lower is better)
Translates to: LDAVPHAVPAAGRRG*RPAAAVPRARKGQT
Trigger: AGTCTGTCCTTTTCGGGCCCTCGGTACAGCCGCAGCAGGACGCCACCCTCTGCGGCCAGCAGCAGGTACAGCATGCGGAACCGCATCCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS GCA 90 bp GGGCTCTGGGAAGGGGAGCTGCCGCCCTTGCCAGGGAGGCTTAGCTaGAGTGAATGCTGGAGCGAGGCGATCAGGCTCTCATTGAGCACC +
Preference number: 5 (lower is better)
Translates to: GLWEGELPPLPGRLS*SECWSEAIRLSLST
Trigger: GGTGCTCAATGAGAGCCTGATCGCCTCGCTCCAGCATTCACTGCAGCTAAGCCTCCCTGGCAAGGGCGGCAGCTCCCCTTCCCAGAGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS GCA 90 bp GCCTGGAGCTCCATCGCTGCAGCTCGGAAGGCCGCCACGCTCTACTaGACTGTCATGGTCACCCTGACTCTGGCTCTTGGCAGGCATCGG +
Preference number: 5 (lower is better)
Translates to: AWSSIAAARKAATLY*TVMVTLTLALGRHR
Trigger: CCGATGCCTGCCAAGAGCCAGAGTCAGGGTGACCATGACAGTGCAGTAGAGCGTGGCGGCCTTCCGAGCTGCAGCGATGGAGCTCCAGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS GCA 90 bp TGCTGGGCTGGATTTCTCCTCTTGGCTCCGCACAGCTTCCCCCTCTaGCCTGGTAGGGCTGGGCACGCCTGGGAAAGCTTCGCTCCCGTT +
Preference number: 5 (lower is better)
Translates to: CWAGFLLLAPHSFPL*PGRAGHAWESFAPV
Trigger: AACGGGAGCGAAGCTTTCCCAGGCGTGCCCAGCCCTACCAGGGCAGAGGGGGAAGCTGTGCGGAGCCAAGAGGAGAAATCCAGCCCAGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CCA 90 bp CAGCCCGGCACTTGGGGCACTGGGACTCTCGACCCCTCCTGGATGTaGCGTACTGGCCCGTTTCCAGTTGCTGCCTCAGTGTTGGCTGAG +
Preference number: 5 (lower is better)
Translates to: QPGTWGTGTLDPSWM*RTGPFPVAASVLAE
Trigger: CTCAGCCAACACTGAGGCAGCAACTGGAAACGGGCCAGTACGCCACATCCAGGAGGGGTCGAGAGTCCCAGTGCCCCAAGTGCCGGGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 90 bp GCAGGTTCTCCCTCTCCCTCGGAGATGACGGTCATGGGGCTGCTCTaGATGCGGTTCCGCATGCTGTACCTGCTGCTGGCCGCAGAGGGT +
Preference number: 5 (lower is better)
Translates to: AGSPSPSEMTVMGLL*MRFRMLYLLLAAEG
Trigger: ACCCTCTGCGGCCAGCAGCAGGTACAGCATGCGGAACCGCATCCAGAGCAGCCCCATGACCGTCATCTCCGAGGGAGAGGGAGAACCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS-3UTR CAA 90 bp TTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTGAGGTTGAGCTTGGCTaGGCGGTGCAGGTCCTCAAC +
Preference number: 5 (lower is better)
Translates to: LQAEEEGEEEEAAAAPRPEVELG*AVQVLN
Trigger: GTTGAGGACCTGCACCGCCAAGCCAAGCTCAACCTC...AGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS CCA 90 bp CCTGGATGTGGCGTACTGGCCCGTTTCCAGTTGCTGCCTCAGTGTTaGCTGAGCAGCCCCCGGTGGGGTTCCCTGGATCTTCCTGCAAGC +
Preference number: 5 (lower is better)
Translates to: PGCGVLARFQLLPQC*LSSPRWGSLDLPAS
Trigger: GCTTGCAGGAAGATCCAGGGAACCCCACCGGGGGCTGCTCAGCCAACACTGAGGCAGCAACTGGAAACGGGCCAGTACGCCACATCCAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 90 bp ACTGAGCAGCCCGGCACTTGGGGCACTGGGACTCTCGACCCCTCCTaGATGTGGCGTACTGGCCCGTTTCCAGTTGCTGCCTCAGTGTTG +
Preference number: 5 (lower is better)
Translates to: TEQPGTWGTGTLDPS*MWRTGPFPVAASVL
Trigger: CAACACTGAGGCAGCAACTGGAAACGGGCCAGTACGCCACATCCAGGAGGGGTCGAGAGTCCCAGTGCCCCAAGTGCCGGGCTGCTCAGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 90 bp GCACACCCTGGTAGCATCCAGGGCCCTGCGTGCTTTGTTGTCCGCTaGCTCAGCAGGTTCTCCCTCTCCCTCGGAGATGACGGTCATGGG +
Preference number: 5 (lower is better)
Translates to: AHPGSIQGPACFVVR*LSRFSLSLGDDGHG
Trigger: CCCATGACCGTCATCTCCGAGGGAGAGGGAGAACCTGCTGAGCCAGCGGACAACAAAGCACGCAGGGCCCTGGATGCTACCAGGGTGTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS-3UTR CAA 90 bp TTTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCGAGGAAGCAGCTGTGTaGGGTTCCAGCAAGCCAGCT +
Preference number: 5 (lower is better)
Translates to: FTSGGGGGGGGGGSCTKAEEAAV*GSSKPA
Trigger: AGCTGGCTTGCTGGAACCCAACACAGCTGCTTCCTC...GGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS TCA 90 bp CAGCTCGGAAGGCCGCCACGCTCTACTGCACTGTCATGGTCACCCTaGCTCTGGCTCTTGGCAGGCATCGGAAGCGAGCTCGTCACAGAG +
Preference number: 5 (lower is better)
Translates to: QLGRPPRSTALSWSP*LWLLAGIGSELVTE
Trigger: CTCTGTGACGAGCTCGCTTCCGATGCCTGCCAAGAGCCAGAGTCAGGGTGACCATGACAGTGCAGTAGAGCGTGGCGGCCTTCCGAGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS GCA 90 bp CCTGTTCTTGTTGGGGGAGCAGCTGGATGGGCTGTCCGGGCTGTCTaGCGAAGGCTCCGACCTAGATCTCTGGAAGCGAGGGTCCGTAGA +
Preference number: 5 (lower is better)
Translates to: PVLVGGAAGWAVRAV*RRLRPRSLEARVRR
Trigger: TCTACGGACCCTCGCTTCCAGAGATCTAGGTCGGAGCCTTCGGCAGACAGCCCGGACAGCCCATCCAGCTGCTCCCCCAACAAGAACAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CCA 90 bp GGCCTTCGTTCTTGGCCCACTCTTCCTGAGCTCTCCTGTTCTTGTTaGGGGAGCAGCTGGATGGGCTGTCCGGGCTGTCTGCCGAAGGCT +
Preference number: 5 (lower is better)
Translates to: GLRSWPTLPELSCSC*GSSWMGCPGCLPKA
Trigger: AGCCTTCGGCAGACAGCCCGGACAGCCCATCCAGCTGCTCCCCCAACAAGAACAGGAGAGCTCAGGAAGAGTGGGCCAAGAACGAAGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS-3UTR CAA 90 bp CCGCCCCCTAAAGTACCTGAACCAATGAGTTGCTTAGCCACTTCCCAGCCCCTTCGGCAGCCCTCCTCCTaGTTGGCAGGCCGCCTGAGG +
Preference number: 5 (lower is better)
Translates to: PPPKVPEPMSCLATSQPLRQPSS*LAGRLR
Trigger: CCTCAGGCGGCCTGCCAACAAGGAGGAGGGCTGCCG...AAGGGGCTGGGAAGTGGCTAAGCAACTCATTGGTTCAGGTACTTTAGGGGGCGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS TCA 90 bp CTTTGTTGTCCGCTGGCTCAGCAGGTTCTCCCTCTCCCTCGGAGATaGCGGTCATGGGGCTGCTCTGGATGCGGTTCCGCATGCTGTACC +
Preference number: 5 (lower is better)
Translates to: LCCPLAQQVLPLPRR*RSWGCSGCGSACCT
Trigger: GGTACAGCATGCGGAACCGCATCCAGAGCAGCCCCATGACCGTCATCTCCGAGGGAGAGGGAGAACCTGCTGAGCCAGCGGACAACAAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CCA 90 bp TTCTCTGGTGAGGCGATCTTTGGTCTAACTGAGCAGCCCGGCACTTaGGGCACTGGGACTCTCGACCCCTCCTGGATGTGGCGTACTGGC +
Preference number: 5 (lower is better)
Translates to: FSGEAIFGLTEQPGT*GTGTLDPSWMWRTG
Trigger: GCCAGTACGCCACATCCAGGAGGGGTCGAGAGTCCCAGTGCCCCAAGTGCCGGGCTGCTCAGTTAGACCAAAGATCGCCTCACCAGAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 90 bp CGCCACGCTCTACTGCACTGTCATGGTCACCCTGACTCTGGCTCTTaGCAGGCATCGGAAGCGAGCTCGTCACAGAGGCAGCCTGGCTTT +
Preference number: 5 (lower is better)
Translates to: RHALLHCHGHPDSGS*QASEASSSQRQPGF
Trigger: AAAGCCAGGCTGCCTCTGTGACGAGCTCGCTTCCGATGCCTGCCAAGAGCCAGAGTCAGGGTGACCATGACAGTGCAGTAGAGCGTGGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CCA 90 bp GATGGGCTGTCCGGGCTGTCTGCCGAAGGCTCCGACCTAGATCTCTaGAAGCGAGGGTCCGTAGACTTGAGCATCTCAGCCGCTGACATG +
Preference number: 5 (lower is better)
Translates to: DGLSGLSAEGSDLDL*KRGSVDLSISAADM
Trigger: CATGTCAGCGGCTGAGATGCTCAAGTCTACGGACCCTCGCTTCCAGAGATCTAGGTCGGAGCCTTCGGCAGACAGCCCGGACAGCCCATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CCA 90 bp CCACTCTTCCTGAGCTCTCCTGTTCTTGTTGGGGGAGCAGCTGGATaGGCTGTCCGGGCTGTCTGCCGAAGGCTCCGACCTAGATCTCTG +
Preference number: 5 (lower is better)
Translates to: PLFLSSPVLVGGAAG*AVRAVCRRLRPRSL
Trigger: CAGAGATCTAGGTCGGAGCCTTCGGCAGACAGCCCGGACAGCCCATCCAGCTGCTCCCCCAACAAGAACAGGAGAGCTCAGGAAGAGTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS-3UTR CAA 90 bp TTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTTCTGGTACCTTGGGCTaGGCCTTCCCCTTTCCATTT +
Preference number: 5 (lower is better)
Translates to: LQAEEEGEEEEAAAAPRPSGTLG*AFPFPF
Trigger: AAATGGAAAGGGGAAGGCCAAGCCCAAGGTACCAGA...AGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp TTTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCACCACCAGGAACAGTTaGGGCTTCTTAGAGATGGGG +
Preference number: 5 (lower is better)
Translates to: FTSGGGGGGGGGGSCTKATTRNS*GFLEMG
Trigger: CCCCATCTCTAAGAAGCCCAAACTGTTCCTGGTGGT...GGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS TCA 90 bp GCACGCCTGGGAAAGCTTCGCTCCCGTTCTCTGTGGGCTCCGCTGTaGAATCTCTCTGCGGAGGTGGTACCACCAGGAACAGTTTGGGCT +
Preference number: 5 (lower is better)
Translates to: ARLGKLRSRSLWAPL*NLSAEVVPPGTVWA
Trigger: AGCCCAAACTGTTCCTGGTGGTACCACCTCCGCAGAGAGATTTCACAGCGGAGCCCACAGAGAACGGGAGCGAAGCTTTCCCAGGCGTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS TCA 90 bp GACAGACTCCGAGGCATCAGGCCTTCGTTCTTGGCCCACTCTTCCTaGGCTCTCCTGTTCTTGTTGGGGGAGCAGCTGGATGGGCTGTCC +
Preference number: 5 (lower is better)
Translates to: DRLRGIRPSFLAHSS*ALLFLLGEQLDGLS
Trigger: GGACAGCCCATCCAGCTGCTCCCCCAACAAGAACAGGAGAGCTCAGGAAGAGTGGGCCAAGAACGAAGGCCTGATGCCTCGGAGTCTGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CCA 90 bp CACGTCAGCCTGGACCGTCTGGGCTTGCTGCCGCGTCTTCTCTTCTaGTGTTGGCAGCGGCAGGGACTTGGTCCAGTTTGTCTGAGTATG +
Preference number: 5 (lower is better)
Translates to: HVSLDRLGLLPRLLF*CWQRQGLGPVCLSM
Trigger: CATACTCAGACAAACTGGACCAAGTCCCTGCCGCTGCCAACACCAGAAGAGAAGACGCGGCAGCAAGCCCAGACGGTCCAGGCTGACGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 90 bp TTCCTATCCCATCCACAGAGGCAGGCTCCTCGCTACAGAGGAGGCTaGCCTGGTCCATCTCCTGACCCGTCAGTCTGTCCAGAGAGCACA +
Preference number: 5 (lower is better)
Translates to: FLSHPQRQAPRYRGG*PGPSPDPSVCPEST
Trigger: TGTGCTCTCTGGACAGACTGACGGGTCAGGAGATGGACCAGGCCAGCCTCCTCTGTAGCGAGGAGCCTGCCTCTGTGGATGGGATAGGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS-3UTR CAA 90 bp TTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCTACCCTTGAGAGATGTTaGGTCCAAACTGCAGCTGCT +
Preference number: 5 (lower is better)
Translates to: LQAEEEGEEEEAAAAPRPTLERC*VQTAAA
Trigger: AGCAGCTGCAGTTTGGACCAAACATCTCTCAAGGGT...AGGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp AAAAGGCCACAGAGACTTCCTAGAGTGATGCACAGCTCACCTTCCTGCCTCACTGGGGAGCTGCCGCCCTaGCCAGGGAGGCTTAGCTGC +
Preference number: 5 (lower is better)
Translates to: KRPQRLPRVMHSSPSCLTGELPP*PGRLSC
Trigger: GCAGCTAAGCCTCCCTGGCAAGGGCGGCAGCTCCCC...AGTGAGGCAGGAAGGTGAGCTGTGCATCACTCTAGGAAGTCTCTGTGGCCTTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp AAAAGGCCACAGAGACTTCCTAGAGTGATGCACAGCTCACCTTCCTGCCTCACTCGGCAGCCCTCCTCCTaGTTGGCAGGCCGCCTGAGG +
Preference number: 5 (lower is better)
Translates to: KRPQRLPRVMHSSPSCLTRQPSS*LAGRLR
Trigger: CCTCAGGCGGCCTGCCAACAAGGAGGAGGGCTGCCG...AGTGAGGCAGGAAGGTGAGCTGTGCATCACTCTAGGAAGTCTCTGTGGCCTTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS GCA 90 bp AACCAGGAGTGGCCAGGTGTGGCTTCAGTGGGGATGCCCGCCCATTaGTGGAGGTTTTATATTCCCAGGGCTCAGAACTGCCACATCCCC +
Preference number: 5 (lower is better)
Translates to: NQEWPGVASVGMPAH*WRFYIPRAQNCHIP
Trigger: GGGGATGTGGCAGTTCTGAGCCCTGGGAATATAAAACCTCCAGCAATGGGCGGGCATCCCCACTGAAGCCACACCTGGCCACTCCTGGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS-3UTR CAA 90 bp CCGCCCCCTAAAGTACCTGAACCAATGAGTTGCTTAGCCACTTCCCAGCCCCTTAGCGGCCTGATCCCCTaGGCTTCTCTGAGCCCTTCC +
Preference number: 5 (lower is better)
Translates to: PPPKVPEPMSCLATSQPLSGLIP*ASLSPS
Trigger: GGAAGGGCTCAGAGAAGCCAAGGGGATCAGGCCGCT...AAGGGGCTGGGAAGTGGCTAAGCAACTCATTGGTTCAGGTACTTTAGGGGGCGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS TCA 90 bp CTGGGCAGCAACGCCTACCCCCTTGTGAGCCCTGATCCTTCTCATTaGTGGTGGGATGACCTTCACGTCTTCGGTCTGACAGCTGGTGTC +
Preference number: 5 (lower is better)
Translates to: LGSNAYPLVSPDPSH*WWDDLHVFGLTAGV
Trigger: GACACCAGCTGTCAGACCGAAGACGTGAAGGTCATCCCACCATCAATGAGAAGGATCAGGGCTCACAAGGGGGTAGGCGTTGCTGCCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS GCA 90 bp GTTATGTTTATAGGAACCACGTCAGCCTGGACCGTCTGGGCTTGCTaGCGCGTCTTCTCTTCTGGTGTTGGCAGCGGCAGGGACTTGGTC +
Preference number: 5 (lower is better)
Translates to: VMFIGTTSAWTVWAC*RVFSSGVGSGRDLV
Trigger: GACCAAGTCCCTGCCGCTGCCAACACCAGAAGAGAAGACGCGGCAGCAAGCCCAGACGGTCCAGGCTGACGTGGTTCCTATAAACATAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS GCA 90 bp GCAGTTATGTTTATAGGAACCACGTCAGCCTGGACCGTCTGGGCTTaGTGCCGCGTCTTCTCTTCTGGTGTTGGCAGCGGCAGGGACTTG +
Preference number: 5 (lower is better)
Translates to: AVMFIGTTSAWTVWA*CRVFSSGVGSGRDL
Trigger: CAAGTCCCTGCCGCTGCCAACACCAGAAGAGAAGACGCGGCAGCAAGCCCAGACGGTCCAGGCTGACGTGGTTCCTATAAACATAACTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000207038.2
CDS GCA 90 bp CCAGTTATGTTTATAGGAACCACGTCAGCCTGGACCGTCTGGGCTTaGTGCCGCGTCTTCTCTTCTGGTGTTGGCAGCGGCAGGGACTTG +
Preference number: 5 (lower is better)
Translates to: PVMFIGTTSAWTVWA*CRVFSSGVGSGRDL
Trigger: CAAGTCCCTGCCGCTGCCAACACCAGAAGAGAAGACGCGGCAGCAAGCCCAGACGGTCCAGGCTGACGTGGTTCCTATAAACATAACTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100054.4
ENSMUST00000162891.8
CDS CCA 90 bp GCTGATGCAGTTATGTTTATAGGAACCACGTCAGCCTGGACCGTCTaGGCTTGCTGCCGCGTCTTCTCTTCTGGTGTTGGCAGCGGCAGG +
Preference number: 5 (lower is better)
Translates to: ADAVMFIGTTSAWTV*ACCRVFSSGVGSGR
Trigger: CCTGCCGCTGCCAACACCAGAAGAGAAGACGCGGCAGCAAGCCCAGACGGTCCAGGCTGACGTGGTTCCTATAAACATAACTGCATCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000207038.2
CDS CCA 90 bp CCCCAAGGGTCCGTGTATTCCGACTTGACGCTACTTGTGTCGCTCTaGGACGGAGTGACCCCACACAGAGAATACACGTTGGGAGTGGTG +
Preference number: 5 (lower is better)
Translates to: PQGSVYSDLTLLVSL*DGVTPHREYTLGVV
Trigger: CACCACTCCCAACGTGTATTCTCTGTGTGGGGTCACTCCGTCCCAGAGCGACACAAGTAGCGTCAAGTCGGAATACACGGACCCTTGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 90 bp TTCTCCCCAGTTATGTTTATAGGAACCACGTCAGCCTGGACCGTCTaGGCTTGCTGCCGCGTCTTCTCTTCTGGTGTTGGCAGCGGCAGG +
Preference number: 5 (lower is better)
Translates to: FSPVMFIGTTSAWTV*ACCRVFSSGVGSGR
Trigger: CCTGCCGCTGCCAACACCAGAAGAGAAGACGCGGCAGCAAGCCCAGACGGTCCAGGCTGACGTGGTTCCTATAAACATAACTGGGGAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100054.4
ENSMUST00000162891.8
CDS-3UTR CAA 90 bp TTTACAAGCGGAGGAGGAGGGGGAGGAGGAGGAGGCGGCAGCTGCACCAAGGCCGTCTGGTTGTTCTTTTaGGGAATCCTTCGCAGAGAA +
Preference number: 5 (lower is better)
Translates to: FTSGGGGGGGGGGSCTKAVWLFF*GILRRE
Trigger: TTCTCTGCGAAGGATTCCCAAAAAGAACAACCAGAC...GGCCTTGGTGCAGCTGCCGCCTCCTCCTCCTCCCCCTCCTCCTCCGCTTGTAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS GCA 90 bp GAGATGGGAACACAACACCGGCTGAGTCACTCAGCACAGACATGTTaGCTGAGGAACCTGAGAGGTGGCTCATCTGGGCAGCAACGCCTA +
Preference number: 5 (lower is better)
Translates to: EMGTQHRLSHSAQTC*LRNLRGGSSGQQRL
Trigger: TAGGCGTTGCTGCCCAGATGAGCCACCTCTCAGGTTCCTCAGGCAACATGTCTGTGCTGAGTGACTCAGCCGGTGTTGTGTTCCCATCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 90 bp CTTGCTGCCGCGTCTTCTCTTCTGGTGTTGGCAGCGGCAGGGACTTaGTCCAGTTTGTCTGAGTATGAAGGTCGGAGAAGTCACCTGAGG +
Preference number: 5 (lower is better)
Translates to: LAAASSLLVLAAAGT*SSLSEYEGRRSHLR
Trigger: CCTCAGGTGACTTCTCCGACCTTCATACTCAGACAAACTGGACCAAGTCCCTGCCGCTGCCAACACCAGAAGAGAAGACGCGGCAGCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 90 bp TGGCCAGTGGCTGATGCAGTTATGTTTATAGGAACCACGTCAGCCTaGACCGTCTGGGCTTGCTGCCGCGTCTTCTCTTCTGGTGTTGGC +
Preference number: 5 (lower is better)
Translates to: WPVADAVMFIGTTSA*TVWACCRVFSSGVG
Trigger: GCCAACACCAGAAGAGAAGACGCGGCAGCAAGCCCAGACGGTCCAGGCTGACGTGGTTCCTATAAACATAACTGCATCAGCCACTGGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000207038.2
CDS TCA 90 bp CTGATCCTTCTCATTGATGGTGGGATGACCTTCACGTCTTCGGTCTaGCAGCTGGTGTCCCTGGTTTCCAAGCATTGCCCGGTGGACCGA +
Preference number: 5 (lower is better)
Translates to: LILLIDGGMTFTSSV*QLVSLVSKHCPVDR
Trigger: TCGGTCCACCGGGCAATGCTTGGAAACCAGGGACACCAGCTGTCAGACCGAAGACGTGAAGGTCATCCCACCATCAATGAGAAGGATCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS GCA 90 bp CATCGGCTTCCACCTGGTGCCCACAAACGGACAGCTCTCCATCACTaGGGAACAGCCTCTTTGTCTGCCTGGACAGGGAGGAGAAATTTA +
Preference number: 5 (lower is better)
Translates to: HRLPPGAHKRTALHH*GTASLSAWTGRRNL
Trigger: TAAATTTCTCCTCCCTGTCCAGGCAGACAAAGAGGCTGTTCCGCAGTGATGGAGAGCTGTCCGTTTGTGGGCACCAGGTGGAAGCCGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037341.14
CDS GCA 90 bp GGCTGGGTCCTGTATATCCAGTTCTCATCATCGGCTTCCACCTGGTaGCCACAAACGGACAGCTCTCCATCACTGCGGAACAGCCTCTTT +
Preference number: 5 (lower is better)
Translates to: GWVLYIQFSSSASTW*PQTDSSPSLRNSLF
Trigger: AAAGAGGCTGTTCCGCAGTGATGGAGAGCTGTCCGTTTGTGGGCACCAGGTGGAAGCCGATGATGAGAACTGGATATACAGGACCCAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037341.14
CDS GCA 90 bp GGGTCTTGTGGCGGGAAGGAACACATTCTCTTGCTGATGCCATGGTaGCGTGTAGTGGACAGTCCATCGACTCTCCTCGTCCAAGTTGGA +
Preference number: 5 (lower is better)
Translates to: GSCGGKEHILLLMPW*RVVDSPSTLLVQVG
Trigger: TCCAACTTGGACGAGGAGAGTCGATGGACTGTCCACTACACGGCACCATGGCATCAGCAAGAGAATGTGTTCCTTCCCGCCACAAGACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 90 bp CTTCATCTTGATAATCGTCGCAGGGGCTGGAGCCGGCTGCAAAGGTaGGTCCCTGAGAATAGTACTGAGAACTTCGGCAGCCATCTTGCC +
Preference number: 5 (lower is better)
Translates to: LHLDNRRRGWSRLQR*VPENSTENFGSHLA
Trigger: GGCAAGATGGCTGCCGAAGTTCTCAGTACTATTCTCAGGGACCCACCTTTGCAGCCGGCTCCAGCCCCTGCGACGATTATCAAGATGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS-3UTR CAA 90 bp AAAAGGCCACAGAGACTTCCTAGAGTGATGCACAGCTCACCTTCCTGCCTCACTGCTGGATTTCTCCTCTaGGCTCCGCACAGCTTCCCC +
Preference number: 5 (lower is better)
Translates to: KRPQRLPRVMHSSPSCLTAGFLL*APHSFP
Trigger: GGGGAAGCTGTGCGGAGCCAAGAGGAGAAATCCAGC...AGTGAGGCAGGAAGGTGAGCTGTGCATCACTCTAGGAAGTCTCTGTGGCCTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp CTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGCAGCTTTAGAAGGTAGGGCCCTGCGTGCTTaGTTGTCCGCTGGCTCAGCA +
Preference number: 5 (lower is better)
Translates to: LPDTVTHCQWPLPAALEGRALRA*LSAGSA
Trigger: TGCTGAGCCAGCGGACAACAAAGCACGCAGGGCCCT...ACCTTCTAAAGCTGCTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS TCA 90 bp ACTTCGGCAGCCATCTTGCCTCAGCTTGTCACATTCCCTCAGCACTaGTTTGAGGTTGAGCTTGGCTTGGCGGTGCAGGTCCTCAACACA +
Preference number: 5 (lower is better)
Translates to: TSAAILPQLVTFPQH*FEVELGLAVQVLNT
Trigger: TGTGTTGAGGACCTGCACCGCCAAGCCAAGCTCAACCTCAAATCAGTGCTGAGGGAATGTGACAAGCTGAGGCAAGATGGCTGCCGAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS GCA 90 bp TTCTGTGTCTTCATCTTGATAATCGTCGCAGGGGCTGGAGCCGGCTaGAAAGGTGGGTCCCTGAGAATAGTACTGAGAACTTCGGCAGCC +
Preference number: 5 (lower is better)
Translates to: FCVFILIIVAGAGAG*KGGSLRIVLRTSAA
Trigger: GGCTGCCGAAGTTCTCAGTACTATTCTCAGGGACCCACCTTTGCAGCCGGCTCCAGCCCCTGCGACGATTATCAAGATGAAGACACAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS GCA 90 bp AAAGCTTCGCTCCCGTTCTCTGTGGGCTCCGCTGTGAAATCTCTCTaGGGAGGTGGTACCACCAGGAACAGTTTGGGCTTCTTAGAGATG +
Preference number: 5 (lower is better)
Translates to: KASLPFSVGSAVKSL*GGGTTRNSLGFLEM
Trigger: CATCTCTAAGAAGCCCAAACTGTTCCTGGTGGTACCACCTCCGCAGAGAGATTTCACAGCGGAGCCCACAGAGAACGGGAGCGAAGCTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CCA 90 bp CGATCGAAATTCTCCCCAGTTATGTTTATAGGAACCACGTCAGCCTaGACCGTCTGGGCTTGCTGCCGCGTCTTCTCTTCTGGTGTTGGC +
Preference number: 5 (lower is better)
Translates to: RSKFSPVMFIGTTSA*TVWACCRVFSSGVG
Trigger: GCCAACACCAGAAGAGAAGACGCGGCAGCAAGCCCAGACGGTCCAGGCTGACGTGGTTCCTATAAACATAACTGGGGAGAATTTCGATCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100054.4
ENSMUST00000162891.8
CDS-3UTR CAA 90 bp CTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGCAGCTTTAGAAGGTCTGGCCCGTTTCCAGTaGCTGCCTCAGTGTTGGCTG +
Preference number: 5 (lower is better)
Translates to: LPDTVTHCQWPLPAALEGLARFQ*LPQCWL
Trigger: CAGCCAACACTGAGGCAGCAACTGGAAACGGGCCAG...ACCTTCTAAAGCTGCTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp AAAAGGCCACAGAGACTTCCTAGAGTGATGCACAGCTCACCTTCCTGCCTCACTAGCTTCTCTGCCCTGTaGAGACAGGCAGCTCTTCGC +
Preference number: 5 (lower is better)
Translates to: KRPQRLPRVMHSSPSCLTSFSAL*RQAALR
Trigger: GCGAAGAGCTGCCTGTCTCAACAGGGCAGAGAAGCT...AGTGAGGCAGGAAGGTGAGCTGTGCATCACTCTAGGAAGTCTCTGTGGCCTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp CTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGCAGCTTTAGAAGGTGCTCTCCTGTTCTTGTaGGGGGAGCAGCTGGATGGG +
Preference number: 5 (lower is better)
Translates to: LPDTVTHCQWPLPAALEGALLFL*GEQLDG
Trigger: CCCATCCAGCTGCTCCCCCAACAAGAACAGGAGAGC...ACCTTCTAAAGCTGCTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS GCA 90 bp CCACAAACGGACAGCTCTCCATCACTGCGGAACAGCCTCTTTGTCTaGCTGGACAGGGAGGAGAAATTTATCCAACTCACAGCACGTGAG +
Preference number: 5 (lower is better)
Translates to: PQTDSSPSLRNSLFV*LDREEKFIQLTARE
Trigger: CTCACGTGCTGTGAGTTGGATAAATTTCTCCTCCCTGTCCAGGCAGACAAAGAGGCTGTTCCGCAGTGATGGAGAGCTGTCCGTTTGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037341.14
CDS GCA 90 bp CAGAACTGCCACATCCCCTGTCCCCCGAATAACTACACTCGCTCTTaGCATCCACATCTGAAGGGTGGTCAGGAAAGCTTGGGTTGTTTC +
Preference number: 5 (lower is better)
Translates to: QNCHIPCPPNNYTRS*HPHLKGGQESLGCF
Trigger: GAAACAACCCAAGCTTTCCTGACCACCCTTCAGATGTGGATGGCAAGAGCGAGTGTAGTTATTCGGGGGACAGGGGATGTGGCAGTTCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 90 bp AAACGGACAGCTCTCCATCACTGCGGAACAGCCTCTTTGTCTGCCTaGACAGGGAGGAGAAATTTATCCAACTCACAGCACGTGAGAGGG +
Preference number: 5 (lower is better)
Translates to: KRTALHHCGTASLSA*TGRRNLSNSQHVRG
Trigger: CCCTCTCACGTGCTGTGAGTTGGATAAATTTCTCCTCCCTGTCCAGGCAGACAAAGAGGCTGTTCCGCAGTGATGGAGAGCTGTCCGTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037341.14
CDS CCA 90 bp TTCGGTCTGCTTCTGTGTCTTCATCTTGATAATCGTCGCAGGGGCTaGAGCCGGCTGCAAAGGTGGGTCCCTGAGAATAGTACTGAGAAC +
Preference number: 5 (lower is better)
Translates to: FGLLLCLHLDNRRRG*SRLQRWVPENSTEN
Trigger: GTTCTCAGTACTATTCTCAGGGACCCACCTTTGCAGCCGGCTCCAGCCCCTGCGACGATTATCAAGATGAAGACACAGAAGCAGACCGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 90 bp TTCTCGCCTGACTCTTCCTGTGTGGGGCCCGGTGATGTATTAGGTTaGACCATGGGGACATTGGCTTCCACAATGCTAGAGGATAAGGAC +
Preference number: 5 (lower is better)
Translates to: FSPDSSCVGPGDVLG*TMGTLASTMLEDKD
Trigger: GTCCTTATCCTCTAGCATTGTGGAAGCCAATGTCCCCATGGTCCAACCTAATACATCACCGGGCCCCACACAGGAAGAGTCAGGCGAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS-3UTR CAA 90 bp TGCTTTGGCTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCGATTTGAGGTTGAGCTaGGCTTGGCGGTGCAGGTCC +
Preference number: 5 (lower is better)
Translates to: CFGLCGLTSRHCHTLSMADLRLS*AWRCRS
Trigger: GGACCTGCACCGCCAAGCCAAGCTCAACCTCAAATC...GGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp TGCTTTGGCTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCTCTTCTCTTCTGGTGTaGGCAGCGGCAGGGACTTGG +
Preference number: 5 (lower is better)
Translates to: CFGLCGLTSRHCHTLSMASSLLV*AAAGTW
Trigger: CCAAGTCCCTGCCGCTGCCAACACCAGAAGAGAAGA...GGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp CTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGCACAGAGAATACACGTaGGGAGTGGTGGTGGAGGTC +
Preference number: 5 (lower is better)
Translates to: LVWLDFQTLSHIVNGHCQHREYT*GVVVEV
Trigger: GACCTCCACCACCACTCCCAACGTGTATTCTCTGTG...CTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp TGCTTTGGCTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCAGCTTCTCTGCCCTGTaGAGACAGGCAGCTCTTCGC +
Preference number: 5 (lower is better)
Translates to: CFGLCGLTSRHCHTLSMASFSAL*RQAALR
Trigger: GCGAAGAGCTGCCTGTCTCAACAGGGCAGAGAAGCT...GGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS CCA 90 bp AAACCACACATGCTGGACTCTCCAAAAACCTCAACTGCTGGGATTTaGGCCTCGAAAGCATCCCAGTACTCGACGCACCTCCTAAATGCG +
Preference number: 5 (lower is better)
Translates to: KPHMLDSPKTSTAGI*ASKASQYSTHLLNA
Trigger: CGCATTTAGGAGGTGCGTCGAGTACTGGGATGCTTTCGAGGCCCAAATCCCAGCAGTTGAGGTTTTTGGAGAGTCCAGCATGTGTGGTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 90 bp CCATTTTCCCTGTTTGCTGGGGCATTTAGAGAGACCTCTGAATCATaGAGGGATAACAGCGTGGTGGCACCAGGGACAGAGGAGGCTAAA +
Preference number: 5 (lower is better)
Translates to: PFSLFAGAFRETSES*RDNSVVAPGTEEAK
Trigger: TTTAGCCTCCTCTGTCCCTGGTGCCACCACGCTGTTATCCCTCCATGATTCAGAGGTCTCTCTAAATGCCCCAGCAAACAGGGAAAATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS-3UTR CAA 90 bp CCACCCATGCTTCTGACACCAAGGCTAGAAATGTATGCAGTAGGCACAGGACACGGGACTTGGTCCAGTTaGTCTGAGTATGAAGGTCGG +
Preference number: 5 (lower is better)
Translates to: PPMLLTPRLEMYAVGTGHGTWSS*SEYEGR
Trigger: CCGACCTTCATACTCAGACAAACTGGACCAAGTCCC...GTGTCCTGTGCCTACTGCATACATTTCTAGCCTTGGTGTCAGAAGCATGGGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp CTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGCAGCTTTAGAAGGTCTCAGCACAGACATGTaGCCTGAGGAACCTGAGAGG +
Preference number: 5 (lower is better)
Translates to: LPDTVTHCQWPLPAALEGLSTDM*PEEPER
Trigger: CCTCTCAGGTTCCTCAGGCAACATGTCTGTGCTGAG...ACCTTCTAAAGCTGCTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp CTCCTCAGAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGTTGCTGCCTCAGTGTaGGCTGAGCAGCCCCCGGTG +
Preference number: 5 (lower is better)
Translates to: LLRDVSEMAIKGSVEEVLVAASV*AEQPPV
Trigger: CACCGGGGGCTGCTCAGCCAACACTGAGGCAGCAAC...CAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTCTGAGGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp CTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGACCACCAGGAACAGTTaGGGCTTCTTAGAGATGGGG +
Preference number: 5 (lower is better)
Translates to: LVWLDFQTLSHIVNGHCQTTRNS*GFLEMG
Trigger: CCCCATCTCTAAGAAGCCCAAACTGTTCCTGGTGGT...CTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp CCACCCATGCTTCTGACACCAAGGCTAGAAATGTATGCAGTAGGCACAGGACACTGGACCATGGGGACATaGGCTTCCACAATGCTAGAG +
Preference number: 5 (lower is better)
Translates to: PPMLLTPRLEMYAVGTGHWTMGT*ASTMLE
Trigger: CTCTAGCATTGTGGAAGCCAATGTCCCCATGGTCCA...GTGTCCTGTGCCTACTGCATACATTTCTAGCCTTGGTGTCAGAAGCATGGGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS TCA 90 bp TGCAGTGAATGCTGGAGCGAGGCGATCAGGCTCTCATTGAGCACCTaGCCGTTTGTCTGGTTGTTCTTTTTGGGAATCCTTCGCAGAGAA +
Preference number: 5 (lower is better)
Translates to: CSECWSEAIRLSLST*PFVWLFFLGILRRE
Trigger: TTCTCTGCGAAGGATTCCCAAAAAGAACAACCAGACAAACGGTCAGGTGCTCAATGAGAGCCTGATCGCCTCGCTCCAGCATTCACTGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS TCA 90 bp TGTCACAGGCGGGGAGGGAGAGTGATTTCGAGTGTGATCGTCTTCTaGGTCTTTCCGGCCAAGGACTTTCCTTTTAGATCTGTGAATGGC +
Preference number: 5 (lower is better)
Translates to: CHRRGGRVISSVIVF*VFPAKDFPFRSVNG
Trigger: GCCATTCACAGATCTAAAAGGAAAGTCCTTGGCCGGAAAGACTCAGAAGACGATCACACTCGAAATCACTCTCCCTCCCCGCCTGTGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CCA 90 bp TGGTCCTCTGAACACAGGGACCTGGTATCACCCTTGAGAGATGTTTaGTCCAAACTGCAGCTGCTCACGTTACTTGTGGGAGTAGAGCAA +
Preference number: 5 (lower is better)
Translates to: WSSEHRDLVSPLRDV*SKLQLLTLLVGVEQ
Trigger: TTGCTCTACTCCCACAAGTAACGTGAGCAGCTGCAGTTTGGACCAAACATCTCTCAAGGGTGATACCAGGTCCCTGTGTTCAGAGGACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS-3UTR CAA 90 bp CTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTGTGCGGAACAGCCTCTTaGTCTGCCTGGACAGGGAGG +
Preference number: 5 (lower is better)
Translates to: LKWLSKVLWKKSWMLWLVCGTAS*SAWTGR
Trigger: CCTCCCTGTCCAGGCAGACAAAGAGGCTGTTCCGCA...CACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037341.14
CDS-3UTR CAA 90 bp TTTCTTTGGTATAGCCAAAAGTTAGAAAATGCCAGGTGTCACATTTCAAGTGACGGGGAGCTGCCGCCCTaGCCAGGGAGGCTTAGCTGC +
Preference number: 5 (lower is better)
Translates to: FLWYSQKLENARCHISSDGELPP*PGRLSC
Trigger: GCAGCTAAGCCTCCCTGGCAAGGGCGGCAGCTCCCC...GTCACTTGAAATGTGACACCTGGCATTTTCTAACTTTTGGCTATACCAAAGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp CTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGTTTCTTTCTGGTACCTaGGGCTTGGCCTTCCCCTTT +
Preference number: 5 (lower is better)
Translates to: LVWLDFQTLSHIVNGHCQFLSGT*GLAFPF
Trigger: AAAGGGGAAGGCCAAGCCCAAGGTACCAGAAAGAAA...CTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp TGCTTTGGCTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCCTGGATAGACCCTACTaGCTTTGGAGAGGCCAGGTT +
Preference number: 5 (lower is better)
Translates to: CFGLCGLTSRHCHTLSMALDRPY*LWRGQV
Trigger: AACCTGGCCTCTCCAAAGCAAGTAGGGTCTATCCAG...GGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAGCCAAAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS TCA 90 bp TCCCCTGTCCCCCGAATAACTACACTCGCTCTTGCCATCCACATCTaGAGGGTGGTCAGGAAAGCTTGGGTTGTTTCTACAATGATAGAG +
Preference number: 5 (lower is better)
Translates to: SPVPRITTLALAIHI*RVVRKAWVVSTMIE
Trigger: CTCTATCATTGTAGAAACAACCCAAGCTTTCCTGACCACCCTTCAGATGTGGATGGCAAGAGCGAGTGTAGTTATTCGGGGGACAGGGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS TCA 90 bp AGTAACCATCATGGTCCTCTGAACACAGGGACCTGGTATCACCCTTaGGAGATGTTTGGTCCAAACTGCAGCTGCTCACGTTACTTGTGG +
Preference number: 5 (lower is better)
Translates to: SNHHGPLNTGTWYHP*EMFGPNCSCSRYLW
Trigger: CCACAAGTAACGTGAGCAGCTGCAGTTTGGACCAAACATCTCTCAAGGGTGATACCAGGTCCCTGTGTTCAGAGGACCATGATGGTTACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS TCA 90 bp GTTCCCAGCCTCGTGAGTGGTAGTATAGTAACCATCATGGTCCTCTaGACACAGGGACCTGGTATCACCCTTGAGAGATGTTTGGTCCAA +
Preference number: 5 (lower is better)
Translates to: VPSLVSGSIVTIMVL*TQGPGITLERCLVQ
Trigger: TTGGACCAAACATCTCTCAAGGGTGATACCAGGTCCCTGTGTTCAGAGGACCATGATGGTTACTATACTACCACTCACGAGGCTGGGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS GCA 90 bp CCTTCGCAGAGAATCGGTCCGGGATGGTGGCAGGGGTGGTTTCTTTaGTTTCTTCAGAGAGATGTTTCTCGAAAGGATTTTATCCTGGTG +
Preference number: 5 (lower is better)
Translates to: PSQRIGPGWWQGWFL*FLQRDVSRKDFILV
Trigger: CACCAGGATAAAATCCTTTCGAGAAACATCTCTCTGAAGAAAGCAAAGAAACCACCCCTGCCACCATCCCGGACCGATTCTCTGCGAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 90 bp TTTAAAAACACAGGCACAGGGGTGAGTGCTGTGGGTGTATTCGACTaGCTAGAATACCCACTGGATGGAGAGGTGACTCTCTGTGACTTC +
Preference number: 5 (lower is better)
Translates to: FKNTGTGVSAVGVFD*LEYPLDGEVTLCDF
Trigger: GAAGTCACAGAGAGTCACCTCTCCATCCAGTGGGTATTCTAGCCAGTCGAATACACCCACAGCACTCACCCCTGTGCCTGTGTTTTTAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS-3UTR CAA 90 bp CCCTACCCTTCTCTCACGATGCCTCTCTTCCTTCATTCTTCATTAACAACTCCACTCAGCACAGACATGTaGCCTGAGGAACCTGAGAGG +
Preference number: 5 (lower is better)
Translates to: PYPSLTMPLFLHSSLTTPLSTDM*PEEPER
Trigger: CCTCTCAGGTTCCTCAGGCAACATGTCTGTGCTGAG...TGGAGTTGTTAATGAAGAATGAAGGAAGAGAGGCATCGTGAGAGAAGGGTAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp CTTGTGTGGCTTGACTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGGCAGGGGTGGTTTCTTaGCTTTCTTCAGAGAGATGT +
Preference number: 5 (lower is better)
Translates to: LVWLDFQTLSHIVNGHCQAGVVS*LSSERC
Trigger: ACATCTCTCTGAAGAAAGCAAAGAAACCACCCCTGC...CTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAGTCAAGCCACACAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp ATGCCTCTCTTCCTTCATTCTTCATTAACAACTCCAGGAAGGAATTCATTTAAACAGCCCTCCTCCTTGTaGGCAGGCCGCCTGAGGGCC +
Preference number: 5 (lower is better)
Translates to: MPLFLHSSLTTPGRNSFKQPSSL*AGRLRA
Trigger: GGCCCTCAGGCGGCCTGCCAACAAGGAGGAGGGCTG...TTTAAATGAATTCCTTCCTGGAGTTGTTAATGAAGAATGAAGGAAGAGAGGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS CCA 90 bp GTTGTTCTTTTTGGGAATCCTTCGCAGAGAATCGGTCCGGGATGGTaGCAGGGGTGGTTTCTTTGCTTTCTTCAGAGAGATGTTTCTCGA +
Preference number: 5 (lower is better)
Translates to: VVLFGNPSQRIGPGW*QGWFLCFLQRDVSR
Trigger: TCGAGAAACATCTCTCTGAAGAAAGCAAAGAAACCACCCCTGCCACCATCCCGGACCGATTCTCTGCGAAGGATTCCCAAAAAGAACAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 90 bp CTGGTTGTTCTTTTTGGGAATCCTTCGCAGAGAATCGGTCCGGGATaGTGGCAGGGGTGGTTTCTTTGCTTTCTTCAGAGAGATGTTTCT +
Preference number: 5 (lower is better)
Translates to: LVVLFGNPSQRIGPG*WQGWFLCFLQRDVS
Trigger: AGAAACATCTCTCTGAAGAAAGCAAAGAAACCACCCCTGCCACCATCCCGGACCGATTCTCTGCGAAGGATTCCCAAAAAGAACAACCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS-3UTR CAA 90 bp TCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTTCTTCTCTTCTGGTGTaGGCAGCGGCAGGGACTTGG +
Preference number: 5 (lower is better)
Translates to: SEMAIKGSVEEVLDALACSSLLV*AAAGTW
Trigger: CCAAGTCCCTGCCGCTGCCAACACCAGAAGAGAAGA...ACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp AAAAGGCCACAGAGACTTCCTAGAGTGATGCACAGCTCACCTTCCTGCCTCACTATCCATTTTCCCTGTTaGCTGGGGCATTTAGAGAGA +
Preference number: 5 (lower is better)
Translates to: KRPQRLPRVMHSSPSCLTIHFPC*LGHLER
Trigger: TCTCTCTAAATGCCCCAGCAAACAGGGAAAATGGAT...AGTGAGGCAGGAAGGTGAGCTGTGCATCACTCTAGGAAGTCTCTGTGGCCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp AAAAGGCCACAGAGACTTCCTAGAGTGATGCACAGCTCACCTTCCTGCCTCACTGTCTGGTTGTTCTTTTaGGGAATCCTTCGCAGAGAA +
Preference number: 5 (lower is better)
Translates to: KRPQRLPRVMHSSPSCLTVWLFF*GILRRE
Trigger: TTCTCTGCGAAGGATTCCCAAAAAGAACAACCAGAC...AGTGAGGCAGGAAGGTGAGCTGTGCATCACTCTAGGAAGTCTCTGTGGCCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp GAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTGCTGGATTTCTCCTCTaGGCTCCGCACAGCTTCCCC +
Preference number: 5 (lower is better)
Translates to: EMYLKWLSKVLWKKSWMLAGFLL*APHSFP
Trigger: GGGGAAGCTGTGCGGAGCCAAGAGGAGAAATCCAGC...AAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp CTCCTCAGAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGAGGAAGCAGCTGTGTaGGGTTCCAGCAAGCCAGCT +
Preference number: 5 (lower is better)
Translates to: LLRDVSEMAIKGSVEEVLEEAAV*GSSKPA
Trigger: AGCTGGCTTGCTGGAACCCAACACAGCTGCTTCCTC...CAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTCTGAGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp GAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTGCTCTCCTGTTCTTGTaGGGGGAGCAGCTGGATGGG +
Preference number: 5 (lower is better)
Translates to: EMYLKWLSKVLWKKSWMLALLFL*GEQLDG
Trigger: CCCATCCAGCTGCTCCCCCAACAAGAACAGGAGAGC...AAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp GAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTGATTTGAGGTTGAGCTaGGCTTGGCGGTGCAGGTCC +
Preference number: 5 (lower is better)
Translates to: EMYLKWLSKVLWKKSWMLDLRLS*AWRCRS
Trigger: GGACCTGCACCGCCAAGCCAAGCTCAACCTCAAATC...AAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp CTTCCAGACACTGTCACACATTGTCAATGGCCACTGCCAGCAGCTTTAGAAGGTATCCATTTTCCCTGTTaGCTGGGGCATTTAGAGAGA +
Preference number: 5 (lower is better)
Translates to: LPDTVTHCQWPLPAALEGIHFPC*LGHLER
Trigger: TCTCTCTAAATGCCCCAGCAAACAGGGAAAATGGAT...ACCTTCTAAAGCTGCTGGCAGTGGCCATTGACAATGTGTGACAGTGTCTGGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp CCGCCCCCTAAAGTACCTGAACCAATGAGTTGCTTAGCCACTTCCCAGCCCCTTCATTTGCTGGTGACATaGATTTTAAAAACACAGGCA +
Preference number: 5 (lower is better)
Translates to: PPPKVPEPMSCLATSQPLHLLVT*ILKTQA
Trigger: TGCCTGTGTTTTTAAAATCAATGTCACCAGCAAATG...AAGGGGCTGGGAAGTGGCTAAGCAACTCATTGGTTCAGGTACTTTAGGGGGCGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp CTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTGTGGACCATGGGGACATaGGCTTCCACAATGCTAGAG +
Preference number: 5 (lower is better)
Translates to: LKWLSKVLWKKSWMLWLVWTMGT*ASTMLE
Trigger: CTCTAGCATTGTGGAAGCCAATGTCCCCATGGTCCA...CACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS TCA 90 bp GGACTTGGTCCAGTTTGTCTGAGTATGAAGGTCGGAGAAGTCACCTaGGGTTGGCGTTTTAGGTCTCCTGATTCCGATAAATCTTTCTTC +
Preference number: 5 (lower is better)
Translates to: GLGPVCLSMKVGEVT*GWRFRSPDSDKSFF
Trigger: GAAGAAAGATTTATCGGAATCAGGAGACCTAAAACGCCAACCTCAGGTGACTTCTCCGACCTTCATACTCAGACAAACTGGACCAAGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS-3UTR CAA 90 bp GAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTAGCACTGATTTGAGGTaGAGCTTGGCTTGGCGGTGC +
Preference number: 5 (lower is better)
Translates to: EMYLKWLSKVLWKKSWMLSTDLR*SLAWRC
Trigger: GCACCGCCAAGCCAAGCTCAACCTCAAATCAGTGCT...AAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp CTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTGACCCTTGAGAGATGTTaGGTCCAAACTGCAGCTGCT +
Preference number: 5 (lower is better)
Translates to: LKWLSKVLWKKSWMLWLVTLERC*VQTAAA
Trigger: AGCAGCTGCAGTTTGGACCAAACATCTCTCAAGGGT...CACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp TTTCTTTGGTATAGCCAAAAGTTAGAAAATGCCAGGTGTCACATTTCAAGTGACCTGGCCCGTTTCCAGTaGCTGCCTCAGTGTTGGCTG +
Preference number: 5 (lower is better)
Translates to: FLWYSQKLENARCHISSDLARFQ*LPQCWL
Trigger: CAGCCAACACTGAGGCAGCAACTGGAAACGGGCCAG...GTCACTTGAAATGTGACACCTGGCATTTTCTAACTTTTGGCTATACCAAAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp CTCCTCAGAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGCTGGATAGACCCTACTaGCTTTGGAGAGGCCAGGTT +
Preference number: 5 (lower is better)
Translates to: LLRDVSEMAIKGSVEEVLLDRPY*LWRGQV
Trigger: AACCTGGCCTCTCCAAAGCAAGTAGGGTCTATCCAG...CAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTCTGAGGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS CCA 90 bp AAGGGTGGTCAGGAAAGCTTGGGTTGTTTCTACAATGATAGAGTATaGCTTGGGATCCATTTTCCCTGTTTGCTGGGGCATTTAGAGAGA +
Preference number: 5 (lower is better)
Translates to: KGGQESLGCFYNDRV*LGIHFPCLLGHLER
Trigger: TCTCTCTAAATGCCCCAGCAAACAGGGAAAATGGATCCCAAGCCATACTCTATCATTGTAGAAACAACCCAAGCTTTCCTGACCACCCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS-3UTR CAA 90 bp GAGATGTATCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTGGGACTTGGTCCAGTTaGTCTGAGTATGAAGGTCGG +
Preference number: 5 (lower is better)
Translates to: EMYLKWLSKVLWKKSWMLGTWSS*SEYEGR
Trigger: CCGACCTTCATACTCAGACAAACTGGACCAAGTCCC...AAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGATACATCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp TCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTGCAGGGGTGGTTTCTTaGCTTTCTTCAGAGAGATGT +
Preference number: 5 (lower is better)
Translates to: SEMAIKGSVEEVLDALACAGVVS*LSSERC
Trigger: ACATCTCTCTGAAGAAAGCAAAGAAACCACCCCTGC...ACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp TTTCTTTGGTATAGCCAAAAGTTAGAAAATGCCAGGTGTCACATTTCAAGTGACCACAGAGAATACACGTaGGGAGTGGTGGTGGAGGTC +
Preference number: 5 (lower is better)
Translates to: FLWYSQKLENARCHISSDHREYT*GVVVEV
Trigger: GACCTCCACCACCACTCCCAACGTGTATTCTCTGTG...GTCACTTGAAATGTGACACCTGGCATTTTCTAACTTTTGGCTATACCAAAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp ATGCCTCTCTTCCTTCATTCTTCATTAACAACTCCAGGAAGGAATTCATTTAAAGGGCCGAGGCCAGGGTaGTATCCAGTTTCTTCATGG +
Preference number: 5 (lower is better)
Translates to: MPLFLHSSLTTPGRNSFKGPRPG*YPVSSW
Trigger: CCATGAAGAAACTGGATACAACCCTGGCCTCGGCCC...TTTAAATGAATTCCTTCCTGGAGTTGTTAATGAAGAATGAAGGAAGAGAGGCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS CCA 90 bp ACTGATGGTCATCTTTCACAGAACATCTGGGTGTGGGACGGTCTCTaGGTTTTATTTTTGAATATGAAGATGAACCGGGTGTTCTACTGT +
Preference number: 5 (lower is better)
Translates to: TDGHLSQNIWVWDGL*VLFLNMKMNRVFYC
Trigger: ACAGTAGAACACCCGGTTCATCTTCATATTCAAAAATAAAACCCAGAGACCGTCCCACACCCAGATGTTCTGTGAAAGATGACCATCAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS-3UTR CAA 90 bp TTTCTTTGGTATAGCCAAAAGTTAGAAAATGCCAGGTGTCACATTTCAAGTGACTCTGGTACCTTGGGCTaGGCCTTCCCCTTTCCATTT +
Preference number: 5 (lower is better)
Translates to: FLWYSQKLENARCHISSDSGTLG*AFPFPF
Trigger: AAATGGAAAGGGGAAGGCCAAGCCCAAGGTACCAGA...GTCACTTGAAATGTGACACCTGGCATTTTCTAACTTTTGGCTATACCAAAGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp CTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTGATGCTATTTCGGGATTaGAGGAAAGCAGATGGCTTT +
Preference number: 5 (lower is better)
Translates to: LKWLSKVLWKKSWMLWLVMLFRD*RKADGF
Trigger: AAAGCCATCTGCTTTCCTCAAATCCCGAAATAGCAT...CACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp TCTGAAATGGCTATCAAAGGTTCTGTGGAAGAAGTCTTGGATGCTTTGGCTTGTATGCTATTTCGGGATTaGAGGAAAGCAGATGGCTTT +
Preference number: 5 (lower is better)
Translates to: SEMAIKGSVEEVLDALACMLFRD*RKADGF
Trigger: AAAGCCATCTGCTTTCCTCAAATCCCGAAATAGCAT...ACAAGCCAAAGCATCCAAGACTTCTTCCACAGAACCTTTGATAGCCATTTCAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp ATGCCTCTCTTCCTTCATTCTTCATTAACAACTCCAGGAAGGAATTCATTTAAATTTCTTTCTGGTACCTaGGGCTTGGCCTTCCCCTTT +
Preference number: 5 (lower is better)
Translates to: MPLFLHSSLTTPGRNSFKFLSGT*GLAFPF
Trigger: AAAGGGGAAGGCCAAGCCCAAGGTACCAGAAAGAAA...TTTAAATGAATTCCTTCCTGGAGTTGTTAATGAAGAATGAAGGAAGAGAGGCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS-3UTR CAA 90 bp TTTCTTTGGTATAGCCAAAAGTTAGAAAATGCCAGGTGTCACATTTCAAGTGACCATTTGCTGGTGACATaGATTTTAAAAACACAGGCA +
Preference number: 5 (lower is better)
Translates to: FLWYSQKLENARCHISSDHLLVT*ILKTQA
Trigger: TGCCTGTGTTTTTAAAATCAATGTCACCAGCAAATG...GTCACTTGAAATGTGACACCTGGCATTTTCTAACTTTTGGCTATACCAAAGAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
CDS TCA 72 bp AGGGCGTCCAGGCGACGGTGCAACTCGGCGGTGCGGTaGCCCAGCGCAGCCGCCTGGCCCTCGAGCTCCCCG +
Preference number: 6 (lower is better)
Translates to: RASRRRCNSAVR*PSAAAWPSSSP
Trigger: CGGGGAGCTCGAGGGCCAGGCGGCTGCGCTGGGTCACCGCACCGCCGAGTTGCACCGTCGCCTGGACGCCCT
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207038.2
CDS GCA 72 bp CGTGCAGGGCGTCCAGGCGACGGTGCAACTCGGCGGTaGGGTGACCCAGCGCAGCCGCCTGGCCCTCGAGCT +
Preference number: 6 (lower is better)
Translates to: RAGRPGDGATRR*GDPAQPPGPRA
Trigger: AGCTCGAGGGCCAGGCGGCTGCGCTGGGTCACCGCACCGCCGAGTTGCACCGTCGCCTGGACGCCCTGCACG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207038.2
CDS GCA 72 bp TTCACTCGCCGGTGGTCCAGACGCGCGGCGGCGGCGTaGAGGGCGTCCAGGCGACGGTGCAACTCGGCGGTG +
Preference number: 6 (lower is better)
Translates to: FTRRWSRRAAAA*RASRRRCNSAV
Trigger: CACCGCCGAGTTGCACCGTCGCCTGGACGCCCTGCACGCCGCCGCCGCGCGTCTGGACCACCGGCGAGTGAA
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207038.2
CDS TCA 72 bp CCAGCTGGGCGAGCAGGCAGACCAGGGTGTGCGAGCTaGCCTGCTCCAGCGAGCGGAAGAGCGGCGGGTCCC +
Preference number: 6 (lower is better)
Translates to: PAGRAGRPGCAS*PAPASGRAAGP
Trigger: GGGACCCGCCGCTCTTCCGCTCGCTGGAGCAGGTCAGCTCGCACACCCTGGTCTGCCTGCTCGCCCAGCTGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207038.2
CDS GCA 72 bp TGGGGCTGCTCTGGATGCGGTTCCGCATGCTGTACCTaGTGCTGGCCGCAGAGGGTGGCGTCCTGCTGCGGC +
Preference number: 6 (lower is better)
Translates to: WGCSGCGSACCT*CWPQRVASCCG
Trigger: GCCGCAGCAGGACGCCACCCTCTGCGGCCAGCAGCAGGTACAGCATGCGGAACCGCATCCAGAGCAGCCCCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS GCA 72 bp GGCTGCTCTGGATGCGGTTCCGCATGCTGTACCTGCTaGTGGCCGCAGAGGGTGGCGTCCTGCTGCGGCTGT +
Preference number: 6 (lower is better)
Translates to: GCSGCGSACCTC*WPQRVASCCGC
Trigger: ACAGCCGCAGCAGGACGCCACCCTCTGCGGCCAGCAGCAGGTACAGCATGCGGAACCGCATCCAGAGCAGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CCA 72 bp AAAATGTCCCCAGCGCAGCGCGACAGGTCGGCCAGCTaGGCGAGCAGGCAGACCAGGGTGTGCGAGCTGACC +
Preference number: 6 (lower is better)
Translates to: KMSPAQRDRSAS*ASRQTRVCELT
Trigger: GGTCAGCTCGCACACCCTGGTCTGCCTGCTCGCCCAGCTGGCCGACCTGTCGCGCTGCGCTGGGGACATTTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207038.2
CDS CCA 72 bp TCGTCCAAGTTGGAAACCGGGATTTTCACTCGCCGGTaGTCCAGACGCGCGGCGGCGGCGTGCAGGGCGTCC +
Preference number: 6 (lower is better)
Translates to: SSKLETGIFTRR*SRRAAAACRAS
Trigger: GGACGCCCTGCACGCCGCCGCCGCGCGTCTGGACCACCGGCGAGTGAAAATCCCGGTTTCCAACTTGGACGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207038.2
CDS TCA 72 bp TCTAGAGCCGGACTGCCGGGGGTGGGGGCCGTAGCATaGGAGCCAGCTCGGGATGCTGGGCTGGATTTCTCC +
Preference number: 6 (lower is better)
Translates to: SRAGLPGVGAVA*EPARDAGLDFS
Trigger: GGAGAAATCCAGCCCAGCATCCCGAGCTGGCTCTCATGCTACGGCCCCCACCCCCGGCAGTCCGGCTCTAGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS GCA 72 bp TGTACCTGCTGCTGGCCGCAGAGGGTGGCGTCCTGCTaGGGCTGTACCGAGGGCCCGAAAAGGACAGACTCC +
Preference number: 6 (lower is better)
Translates to: CTCCWPQRVASC*GCTEGPKRTDS
Trigger: GGAGTCTGTCCTTTTCGGGCCCTCGGTACAGCCGCAGCAGGACGCCACCCTCTGCGGCCAGCAGCAGGTACA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS GCA 72 bp TGCTGTACCTGCTGCTGGCCGCAGAGGGTGGCGTCCTaGTGCGGCTGTACCGAGGGCCCGAAAAGGACAGAC +
Preference number: 6 (lower is better)
Translates to: CCTCCWPQRVAS*CGCTEGPKRTD
Trigger: GTCTGTCCTTTTCGGGCCCTCGGTACAGCCGCAGCAGGACGCCACCCTCTGCGGCCAGCAGCAGGTACAGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CCA 72 bp CCCGGCACTTGGGGCACTGGGACTCTCGACCCCTCCTaGATGTGGCGTACTGGCCCGTTTCCAGTTGCTGCC +
Preference number: 6 (lower is better)
Translates to: PGTWGTGTLDPS*MWRTGPFPVAA
Trigger: GGCAGCAACTGGAAACGGGCCAGTACGCCACATCCAGGAGGGGTCGAGAGTCCCAGTGCCCCAAGTGCCGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 72 bp GTTCCGCATGCTGTACCTGCTGCTGGCCGCAGAGGGTaGCGTCCTGCTGCGGCTGTACCGAGGGCCCGAAAA +
Preference number: 6 (lower is better)
Translates to: VPHAVPAAGRRG*RPAAAVPRARK
Trigger: TTTTCGGGCCCTCGGTACAGCCGCAGCAGGACGCCACCCTCTGCGGCCAGCAGCAGGTACAGCATGCGGAAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS TCA 72 bp CCGCTGGCTCAGCAGGTTCTCCCTCTCCCTCGGAGATaGCGGTCATGGGGCTGCTCTGGATGCGGTTCCGCA +
Preference number: 6 (lower is better)
Translates to: PLAQQVLPLPRR*RSWGCSGCGSA
Trigger: TGCGGAACCGCATCCAGAGCAGCCCCATGACCGTCATCTCCGAGGGAGAGGGAGAACCTGCTGAGCCAGCGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CCA 72 bp GAGCCAGCTCGGGATGCTGGGCTGGATTTCTCCTCTTaGCTCCGCACAGCTTCCCCCTCTGCCCTGGTAGGG +
Preference number: 6 (lower is better)
Translates to: EPARDAGLDFSS*LRTASPSALVG
Trigger: CCCTACCAGGGCAGAGGGGGAAGCTGTGCGGAGCCAAGAGGAGAAATCCAGCCCAGCATCCCGAGCTGGCTC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CCA 72 bp CCCTCTCCCTCGGAGATGACGGTCATGGGGCTGCTCTaGATGCGGTTCCGCATGCTGTACCTGCTGCTGGCC +
Preference number: 6 (lower is better)
Translates to: PSPSEMTVMGLL*MRFRMLYLLLA
Trigger: GGCCAGCAGCAGGTACAGCATGCGGAACCGCATCCAGAGCAGCCCCATGACCGTCATCTCCGAGGGAGAGGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CAA 72 bp ACCCCTCCTGGATGTGGCGTACTGGCCCGTTTCCAGTaGCTGCCTCAGTGTTGGCTGAGCAGCCCCCGGTGG +
Preference number: 6 (lower is better)
Translates to: TPPGCGVLARFQ*LPQCWLSSPRW
Trigger: CCACCGGGGGCTGCTCAGCCAACACTGAGGCAGCAACTGGAAACGGGCCAGTACGCCACATCCAGGAGGGGT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS GCA 72 bp GAAGGGGAGCTGCCGCCCTTGCCAGGGAGGCTTAGCTaGAGTGAATGCTGGAGCGAGGCGATCAGGCTCTCA +
Preference number: 6 (lower is better)
Translates to: EGELPPLPGRLS*SECWSEAIRLS
Trigger: TGAGAGCCTGATCGCCTCGCTCCAGCATTCACTGCAGCTAAGCCTCCCTGGCAAGGGCGGCAGCTCCCCTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 72 bp GGCGTACTGGCCCGTTTCCAGTTGCTGCCTCAGTGTTaGCTGAGCAGCCCCCGGTGGGGTTCCCTGGATCTT +
Preference number: 6 (lower is better)
Translates to: GVLARFQLLPQC*LSSPRWGSLDL
Trigger: AAGATCCAGGGAACCCCACCGGGGGCTGCTCAGCCAACACTGAGGCAGCAACTGGAAACGGGCCAGTACGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 72 bp CTGAGCTCTCCTGTTCTTGTTGGGGGAGCAGCTGGATaGGCTGTCCGGGCTGTCTGCCGAAGGCTCCGACCT +
Preference number: 6 (lower is better)
Translates to: LSSPVLVGGAAG*AVRAVCRRLRP
Trigger: AGGTCGGAGCCTTCGGCAGACAGCCCGGACAGCCCATCCAGCTGCTCCCCCAACAAGAACAGGAGAGCTCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CCA 72 bp CTTCCTGAGCTCTCCTGTTCTTGTTGGGGGAGCAGCTaGATGGGCTGTCCGGGCTGTCTGCCGAAGGCTCCG +
Preference number: 6 (lower is better)
Translates to: LPELSCSCWGSS*MGCPGCLPKAP
Trigger: CGGAGCCTTCGGCAGACAGCCCGGACAGCCCATCCAGCTGCTCCCCCAACAAGAACAGGAGAGCTCAGGAAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CAA 72 bp TGGCGTACTGGCCCGTTTCCAGTTGCTGCCTCAGTGTaGGCTGAGCAGCCCCCGGTGGGGTTCCCTGGATCT +
Preference number: 6 (lower is better)
Translates to: WRTGPFPVAASV*AEQPPVGFPGS
Trigger: AGATCCAGGGAACCCCACCGGGGGCTGCTCAGCCAACACTGAGGCAGCAACTGGAAACGGGCCAGTACGCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CAA 72 bp AGAGCCAGCTCGGGATGCTGGGCTGGATTTCTCCTCTaGGCTCCGCACAGCTTCCCCCTCTGCCCTGGTAGG +
Preference number: 6 (lower is better)
Translates to: RASSGCWAGFLL*APHSFPLCPGR
Trigger: CCTACCAGGGCAGAGGGGGAAGCTGTGCGGAGCCAAGAGGAGAAATCCAGCCCAGCATCCCGAGCTGGCTCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CAA 72 bp CACACCCTGGTAGCATCCAGGGCCCTGCGTGCTTTGTaGTCCGCTGGCTCAGCAGGTTCTCCCTCTCCCTCG +
Preference number: 6 (lower is better)
Translates to: HTLVASRALRAL*SAGSAGSPSPS
Trigger: CGAGGGAGAGGGAGAACCTGCTGAGCCAGCGGACAACAAAGCACGCAGGGCCCTGGATGCTACCAGGGTGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CAA 72 bp GAGCACACCCTGGTAGCATCCAGGGCCCTGCGTGCTTaGTTGTCCGCTGGCTCAGCAGGTTCTCCCTCTCCC +
Preference number: 6 (lower is better)
Translates to: EHTLVASRALRA*LSAGSAGSPSP
Trigger: GGGAGAGGGAGAACCTGCTGAGCCAGCGGACAACAAAGCACGCAGGGCCCTGGATGCTACCAGGGTGTGCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CAA 90 bp TCCTGGATGTGGCGTACTGGCCCGTTTCCAGTTGCTGCCTCAGTGTaGGCTGAGCAGCCCCCGGTGGGGTTCCCTGGATCTTCCTGCAAG +
Preference number: 6 (lower is better)
Translates to: SWMWRTGPFPVAASV*AEQPPVGFPGSSCK
Trigger: CTTGCAGGAAGATCCAGGGAACCCCACCGGGGGCTGCTCAGCCAACACTGAGGCAGCAACTGGAAACGGGCCAGTACGCCACATCCAGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CAA 90 bp GCCGAAGGCTCCGACCTAGATCTCTGGAAGCGAGGGTCCGTAGACTaGAGCATCTCAGCCGCTGACATGCGAGCGCTGGTGTCCGAGCGA +
Preference number: 6 (lower is better)
Translates to: AEGSDLDLWKRGSVD*SISAADMRALVSER
Trigger: TCGCTCGGACACCAGCGCTCGCATGTCAGCGGCTGAGATGCTCAAGTCTACGGACCCTCGCTTCCAGAGATCTAGGTCGGAGCCTTCGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS TCA 72 bp TACTGGCCCGTTTCCAGTTGCTGCCTCAGTGTTGGCTaGGCAGCCCCCGGTGGGGTTCCCTGGATCTTCCTG +
Preference number: 6 (lower is better)
Translates to: YWPVSSCCLSVG*AAPGGVPWIFL
Trigger: CAGGAAGATCCAGGGAACCCCACCGGGGGCTGCTCAGCCAACACTGAGGCAGCAACTGGAAACGGGCCAGTA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS TCA 72 bp AGGCCGCCACGCTCTACTGCACTGTCATGGTCACCCTaGCTCTGGCTCTTGGCAGGCATCGGAAGCGAGCTC +
Preference number: 6 (lower is better)
Translates to: RPPRSTALSWSP*LWLLAGIGSEL
Trigger: GAGCTCGCTTCCGATGCCTGCCAAGAGCCAGAGTCAGGGTGACCATGACAGTGCAGTAGAGCGTGGCGGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS TCA 72 bp GAAGCGAGGGTCCGTAGACTTGAGCATCTCAGCCGCTaGCATGCGAGCGCTGGTGTCCGAGCGACTCCCCTT +
Preference number: 6 (lower is better)
Translates to: EARVRRLEHLSR*HASAGVRATPL
Trigger: AAGGGGAGTCGCTCGGACACCAGCGCTCGCATGTCAGCGGCTGAGATGCTCAAGTCTACGGACCCTCGCTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS GCA 72 bp ATAGGAACCACGTCAGCCTGGACCGTCTGGGCTTGCTaGCGCGTCTTCTCTTCTGGTGTTGGCAGCGGCAGG +
Preference number: 6 (lower is better)
Translates to: IGTTSAWTVWAC*RVFSSGVGSGR
Trigger: CCTGCCGCTGCCAACACCAGAAGAGAAGACGCGGCAGCAAGCCCAGACGGTCCAGGCTGACGTGGTTCCTAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS GCA 72 bp CTGCCGCCCTTGCCAGGGAGGCTTAGCTGCAGTGAATaGTGGAGCGAGGCGATCAGGCTCTCATTGAGCACC +
Preference number: 6 (lower is better)
Translates to: LPPLPGRLSCSE*WSEAIRLSLST
Trigger: GGTGCTCAATGAGAGCCTGATCGCCTCGCTCCAGCATTCACTGCAGCTAAGCCTCCCTGGCAAGGGCGGCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS GCA 72 bp TCCATCGCTGCAGCTCGGAAGGCCGCCACGCTCTACTaGACTGTCATGGTCACCCTGACTCTGGCTCTTGGC +
Preference number: 6 (lower is better)
Translates to: SIAAARKAATLY*TVMVTLTLALG
Trigger: GCCAAGAGCCAGAGTCAGGGTGACCATGACAGTGCAGTAGAGCGTGGCGGCCTTCCGAGCTGCAGCGATGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS GCA 72 bp TCTGTTCCGTACCCCCACACTGCTCCGAGGGACCGTTaGCCTCAGCCCTTCCTATCCCATCCACAGAGGCAG +
Preference number: 6 (lower is better)
Translates to: SVPYPHTAPRDR*PQPFLSHPQRQ
Trigger: CTGCCTCTGTGGATGGGATAGGAAGGGCTGAGGGCAACGGTCCCTCGGAGCAGTGTGGGGGTACGGAACAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CCA 72 bp ACTTGGGGCACTGGGACTCTCGACCCCTCCTGGATGTaGCGTACTGGCCCGTTTCCAGTTGCTGCCTCAGTG +
Preference number: 6 (lower is better)
Translates to: TWGTGTLDPSWM*RTGPFPVAASV
Trigger: CACTGAGGCAGCAACTGGAAACGGGCCAGTACGCCACATCCAGGAGGGGTCGAGAGTCCCAGTGCCCCAAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 72 bp CATCCACAGAGGCAGGCTCCTCGCTACAGAGGAGGCTaGCCTGGTCCATCTCCTGACCCGTCAGTCTGTCCA +
Preference number: 6 (lower is better)
Translates to: HPQRQAPRYRGG*PGPSPDPSVCP
Trigger: TGGACAGACTGACGGGTCAGGAGATGGACCAGGCCAGCCTCCTCTGTAGCGAGGAGCCTGCCTCTGTGGATG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CCA 72 bp CTGGACCGTCTGGGCTTGCTGCCGCGTCTTCTCTTCTaGTGTTGGCAGCGGCAGGGACTTGGTCCAGTTTGT +
Preference number: 6 (lower is better)
Translates to: LDRLGLLPRLLF*CWQRQGLGPVC
Trigger: ACAAACTGGACCAAGTCCCTGCCGCTGCCAACACCAGAAGAGAAGACGCGGCAGCAAGCCCAGACGGTCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 72 bp TCCGGGCTGTCTGCCGAAGGCTCCGACCTAGATCTCTaGAAGCGAGGGTCCGTAGACTTGAGCATCTCAGCC +
Preference number: 6 (lower is better)
Translates to: SGLSAEGSDLDL*KRGSVDLSISA
Trigger: GGCTGAGATGCTCAAGTCTACGGACCCTCGCTTCCAGAGATCTAGGTCGGAGCCTTCGGCAGACAGCCCGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CCA 72 bp TCTTGGCCCACTCTTCCTGAGCTCTCCTGTTCTTGTTaGGGGAGCAGCTGGATGGGCTGTCCGGGCTGTCTG +
Preference number: 6 (lower is better)
Translates to: SWPTLPELSCSC*GSSWMGCPGCL
Trigger: CAGACAGCCCGGACAGCCCATCCAGCTGCTCCCCCAACAAGAACAGGAGAGCTCAGGAAGAGTGGGCCAAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS TCA 72 bp TTCAGTAGAGCCCAGGGCACCCATCCTTCCCTCCAGTaGATAGGTGCTTGCTCTCGGGCCGGTACGTGGAAG +
Preference number: 6 (lower is better)
Translates to: FSRAQGTHPSLQ*IGACSRAGTWK
Trigger: CTTCCACGTACCGGCCCGAGAGCAAGCACCTATTCACTGGAGGGAAGGATGGGTGCCCTGGGCTCTACTGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS GCA 72 bp TTTATAGGAACCACGTCAGCCTGGACCGTCTGGGCTTaGTGCCGCGTCTTCTCTTCTGGTGTTGGCAGCGGC +
Preference number: 6 (lower is better)
Translates to: FIGTTSAWTVWA*CRVFSSGVGSG
Trigger: GCCGCTGCCAACACCAGAAGAGAAGACGCGGCAGCAAGCCCAGACGGTCCAGGCTGACGTGGTTCCTATAAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS GCA 72 bp GCAACCAGGAGTGGCCAGGTGTGGCTTCAGTGGGGATaGCCGCCCATTGCTGGAGGTTTTATATTCCCAGGG +
Preference number: 6 (lower is better)
Translates to: ATRSGQVWLQWG*PPIAGGFIFPG
Trigger: CCCTGGGAATATAAAACCTCCAGCAATGGGCGGGCATCCCCACTGAAGCCACACCTGGCCACTCCTGGTTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 72 bp CTACTGCACTGTCATGGTCACCCTGACTCTGGCTCTTaGCAGGCATCGGAAGCGAGCTCGTCACAGAGGCAG +
Preference number: 6 (lower is better)
Translates to: LLHCHGHPDSGS*QASEASSSQRQ
Trigger: CTGCCTCTGTGACGAGCTCGCTTCCGATGCCTGCCAAGAGCCAGAGTCAGGGTGACCATGACAGTGCAGTAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CAA 72 bp GTTTATAGGAACCACGTCAGCCTGGACCGTCTGGGCTaGCTGCCGCGTCTTCTCTTCTGGTGTTGGCAGCGG +
Preference number: 6 (lower is better)
Translates to: VYRNHVSLDRLG*LPRLLFWCWQR
Trigger: CCGCTGCCAACACCAGAAGAGAAGACGCGGCAGCAAGCCCAGACGGTCCAGGCTGACGTGGTTCCTATAAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CAA 90 bp CAGCCTGGACCGTCTGGGCTTGCTGCCGCGTCTTCTCTTCTGGTGTaGGCAGCGGCAGGGACTTGGTCCAGTTTGTCTGAGTATGAAGGT +
Preference number: 6 (lower is better)
Translates to: QPGPSGLAAASSLLV*AAAGTWSSLSEYEG
Trigger: ACCTTCATACTCAGACAAACTGGACCAAGTCCCTGCCGCTGCCAACACCAGAAGAGAAGACGCGGCAGCAAGCCCAGACGGTCCAGGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CAA 90 bp CAACCAGGAGTGGCCAGGTGTGGCTTCAGTGGGGATGCCCGCCCATaGCTGGAGGTTTTATATTCCCAGGGCTCAGAACTGCCACATCCC +
Preference number: 6 (lower is better)
Translates to: QPGVARCGFSGDARP*LEVLYSQGSELPHP
Trigger: GGGATGTGGCAGTTCTGAGCCCTGGGAATATAAAACCTCCAGCAATGGGCGGGCATCCCCACTGAAGCCACACCTGGCCACTCCTGGTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CAA 90 bp CGGCAGCCATCTTGCCTCAGCTTGTCACATTCCCTCAGCACTGATTaGAGGTTGAGCTTGGCTTGGCGGTGCAGGTCCTCAACACAGGGG +
Preference number: 6 (lower is better)
Translates to: RQPSCLSLSHSLSTD*RLSLAWRCRSSTQG
Trigger: CCCCTGTGTTGAGGACCTGCACCGCCAAGCCAAGCTCAACCTCAAATCAGTGCTGAGGGAATGTGACAAGCTGAGGCAAGATGGCTGCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CAA 90 bp CGAGATGGGAACACAACACCGGCTGAGTCACTCAGCACAGACATGTaGCCTGAGGAACCTGAGAGGTGGCTCATCTGGGCAGCAACGCCT +
Preference number: 6 (lower is better)
Translates to: RDGNTTPAESLSTDM*PEEPERWLIWAATP
Trigger: AGGCGTTGCTGCCCAGATGAGCCACCTCTCAGGTTCCTCAGGCAACATGTCTGTGCTGAGTGACTCAGCCGGTGTTGTGTTCCCATCTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CAA 90 bp CCCAGTTATGTTTATAGGAACCACGTCAGCCTGGACCGTCTGGGCTaGCTGCCGCGTCTTCTCTTCTGGTGTTGGCAGCGGCAGGGACTT +
Preference number: 6 (lower is better)
Translates to: PSYVYRNHVSLDRLG*LPRLLFWCWQRQGL
Trigger: AAGTCCCTGCCGCTGCCAACACCAGAAGAGAAGACGCGGCAGCAAGCCCAGACGGTCCAGGCTGACGTGGTTCCTATAAACATAACTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100054.4
ENSMUST00000162891.8
CDS GCA 72 bp TGGCCAGGTGTGGCTTCAGTGGGGATGCCCGCCCATTaGTGGAGGTTTTATATTCCCAGGGCTCAGAACTGC +
Preference number: 6 (lower is better)
Translates to: WPGVASVGMPAH*WRFYIPRAQNC
Trigger: GCAGTTCTGAGCCCTGGGAATATAAAACCTCCAGCAATGGGCGGGCATCCCCACTGAAGCCACACCTGGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS GCA 72 bp CTCCCGTTCTCTGTGGGCTCCGCTGTGAAATCTCTCTaGGGAGGTGGTACCACCAGGAACAGTTTGGGCTTC +
Preference number: 6 (lower is better)
Translates to: LPFSVGSAVKSL*GGGTTRNSLGF
Trigger: GAAGCCCAAACTGTTCCTGGTGGTACCACCTCCGCAGAGAGATTTCACAGCGGAGCCCACAGAGAACGGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CCA 72 bp CCAGGTGTGGCTTCAGTGGGGATGCCCGCCCATTGCTaGAGGTTTTATATTCCCAGGGCTCAGAACTGCCAC +
Preference number: 6 (lower is better)
Translates to: PGVASVGMPAHC*RFYIPRAQNCH
Trigger: GTGGCAGTTCTGAGCCCTGGGAATATAAAACCTCCAGCAATGGGCGGGCATCCCCACTGAAGCCACACCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CAA 72 bp GTGGCCAGGTGTGGCTTCAGTGGGGATGCCCGCCCATaGCTGGAGGTTTTATATTCCCAGGGCTCAGAACTG +
Preference number: 6 (lower is better)
Translates to: VARCGFSGDARP*LEVLYSQGSEL
Trigger: CAGTTCTGAGCCCTGGGAATATAAAACCTCCAGCAATGGGCGGGCATCCCCACTGAAGCCACACCTGGCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CAA 90 bp TGCAGTTATGTTTATAGGAACCACGTCAGCCTGGACCGTCTGGGCTaGCTGCCGCGTCTTCTCTTCTGGTGTTGGCAGCGGCAGGGACTT +
Preference number: 6 (lower is better)
Translates to: CSYVYRNHVSLDRLG*LPRLLFWCWQRQGL
Trigger: AAGTCCCTGCCGCTGCCAACACCAGAAGAGAAGACGCGGCAGCAAGCCCAGACGGTCCAGGCTGACGTGGTTCCTATAAACATAACTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000207038.2
CDS GCA 72 bp GGCGGGAAGGAACACATTCTCTTGCTGATGCCATGGTaGCGTGTAGTGGACAGTCCATCGACTCTCCTCGTC +
Preference number: 6 (lower is better)
Translates to: GGKEHILLLMPW*RVVDSPSTLLV
Trigger: GACGAGGAGAGTCGATGGACTGTCCACTACACGGCACCATGGCATCAGCAAGAGAATGTGTTCCTTCCCGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 72 bp GTGGAGGTCAAGCTACTACCCTCGCTAACAATGCTCTaGCTTCTGGACCTGGGGAGCCAGGGTTCCTCAAAG +
Preference number: 6 (lower is better)
Translates to: VEVKLLPSLTML*LLDLGSQGSSK
Trigger: CTTTGAGGAACCCTGGCTCCCCAGGTCCAGAAGCCAGAGCATTGTTAGCGAGGGTAGTAGCTTGACCTCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 72 bp GAAAGGTGGAGGTGCTGGCACAGGAGGCAAGGATCTTaGAAGAGAGGGGCTAACTGCTGTGGGAGAAGGAGA +
Preference number: 6 (lower is better)
Translates to: ERWRCWHRRQGS*KRGANCCGRRR
Trigger: TCTCCTTCTCCCACAGCAGTTAGCCCCTCTCTTCCAAGATCCTTGCCTCCTGTGCCAGCACCTCCACCTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CAA 90 bp TCCTGTGTGGGGCCCGGTGATGTATTAGGTTGGACCATGGGGACATaGGCTTCCACAATGCTAGAGGATAAGGACCCTGCAGTTCCCGGT +
Preference number: 6 (lower is better)
Translates to: SCVGPGDVLGWTMGT*ASTMLEDKDPAVPG
Trigger: ACCGGGAACTGCAGGGTCCTTATCCTCTAGCATTGTGGAAGCCAATGTCCCCATGGTCCAACCTAATACATCACCGGGCCCCACACAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS TCA 72 bp GCCATCTTGCCTCAGCTTGTCACATTCCCTCAGCACTaGTTTGAGGTTGAGCTTGGCTTGGCGGTGCAGGTC +
Preference number: 6 (lower is better)
Translates to: AILPQLVTFPQH*FEVELGLAVQV
Trigger: GACCTGCACCGCCAAGCCAAGCTCAACCTCAAATCAGTGCTGAGGGAATGTGACAAGCTGAGGCAAGATGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS TCA 72 bp CTCATTGATGGTGGGATGACCTTCACGTCTTCGGTCTaGCAGCTGGTGTCCCTGGTTTCCAAGCATTGCCCG +
Preference number: 6 (lower is better)
Translates to: LIDGGMTFTSSV*QLVSLVSKHCP
Trigger: CGGGCAATGCTTGGAAACCAGGGACACCAGCTGTCAGACCGAAGACGTGAAGGTCATCCCACCATCAATGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS TCA 72 bp GTGTTGGGTTCCAGCAAGCCAGCTTCTCTGCCCTGTTaGGACAGGCAGCTCTTCGCATTTCTCTCACCATCC +
Preference number: 6 (lower is better)
Translates to: VLGSSKPASLPC*DRQLFAFLSPS
Trigger: GGATGGTGAGAGAAATGCGAAGAGCTGCCTGTCTCAACAGGGCAGAGAAGCTGGCTTGCTGGAACCCAACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CCA 72 bp TGTGGCGGGAAGGAACACATTCTCTTGCTGATGCCATaGTGCCGTGTAGTGGACAGTCCATCGACTCTCCTC +
Preference number: 6 (lower is better)
Translates to: CGGKEHILLLMP*CRVVDSPSTLL
Trigger: GAGGAGAGTCGATGGACTGTCCACTACACGGCACCATGGCATCAGCAAGAGAATGTGTTCCTTCCCGCCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 72 bp GTTATGTTTATAGGAACCACGTCAGCCTGGACCGTCTaGGCTTGCTGCCGCGTCTTCTCTTCTGGTGTTGGC +
Preference number: 6 (lower is better)
Translates to: VMFIGTTSAWTV*ACCRVFSSGVG
Trigger: GCCAACACCAGAAGAGAAGACGCGGCAGCAAGCCCAGACGGTCCAGGCTGACGTGGTTCCTATAAACATAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 72 bp GAGAGACCTCTGAATCATGGAGGGATAACAGCGTGGTaGCACCAGGGACAGAGGAGGCTAAAGCCCGTGAAT +
Preference number: 6 (lower is better)
Translates to: ERPLNHGGITAW*HQGQRRLKPVN
Trigger: ATTCACGGGCTTTAGCCTCCTCTGTCCCTGGTGCCACCACGCTGTTATCCCTCCATGATTCAGAGGTCTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 72 bp AGTAGAGCAACCAGGAGTGGCCAGGTGTGGCTTCAGTaGGGATGCCCGCCCATTGCTGGAGGTTTTATATTC +
Preference number: 6 (lower is better)
Translates to: SRATRSGQVWLQ*GCPPIAGGFIF
Trigger: GAATATAAAACCTCCAGCAATGGGCGGGCATCCCCACTGAAGCCACACCTGGCCACTCCTGGTTGCTCTACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 72 bp ACAGGCACAGGGGTGAGTGCTGTGGGTGTATTCGACTaGCTAGAATACCCACTGGATGGAGAGGTGACTCTC +
Preference number: 6 (lower is better)
Translates to: TGTGVSAVGVFD*LEYPLDGEVTL
Trigger: GAGAGTCACCTCTCCATCCAGTGGGTATTCTAGCCAGTCGAATACACCCACAGCACTCACCCCTGTGCCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 72 bp TGTAGTGGACAGTCCATCGACTCTCCTCGTCCAAGTTaGAAACCGGGATTTTCACTCGCCGGTGGTCCAGAC +
Preference number: 6 (lower is better)
Translates to: CSGQSIDSPRPS*KPGFSLAGGPD
Trigger: GTCTGGACCACCGGCGAGTGAAAATCCCGGTTTCCAACTTGGACGAGGAGAGTCGATGGACTGTCCACTACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207038.2
CDS CAA 72 bp CTTCTGGTGTTGGCAGCGGCAGGGACTTGGTCCAGTTaGTCTGAGTATGAAGGTCGGAGAAGTCACCTGAGG +
Preference number: 6 (lower is better)
Translates to: LLVLAAAGTWSS*SEYEGRRSHLR
Trigger: CCTCAGGTGACTTCTCCGACCTTCATACTCAGACAAACTGGACCAAGTCCCTGCCGCTGCCAACACCAGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CAA 72 bp AACACAACACCGGCTGAGTCACTCAGCACAGACATGTaGCCTGAGGAACCTGAGAGGTGGCTCATCTGGGCA +
Preference number: 6 (lower is better)
Translates to: NTTPAESLSTDM*PEEPERWLIWA
Trigger: TGCCCAGATGAGCCACCTCTCAGGTTCCTCAGGCAACATGTCTGTGCTGAGTGACTCAGCCGGTGTTGTGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CAA 90 bp GCGTCTTCTCTTCTGGTGTTGGCAGCGGCAGGGACTTGGTCCAGTTaGTCTGAGTATGAAGGTCGGAGAAGTCACCTGAGGTTGGCGTTT +
Preference number: 6 (lower is better)
Translates to: ASSLLVLAAAGTWSS*SEYEGRRSHLRLAF
Trigger: AAACGCCAACCTCAGGTGACTTCTCCGACCTTCATACTCAGACAAACTGGACCAAGTCCCTGCCGCTGCCAACACCAGAAGAGAAGACGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS TCA 72 bp GGACAGGGAGGAGAAATTTATCCAACTCACAGCACGTaGGAGGGAGCCTGGGCTTGCCTTGATTCCGAAGGA +
Preference number: 6 (lower is better)
Translates to: GQGGEIYPTHST*EGAWACLDSEG
Trigger: TCCTTCGGAATCAAGGCAAGCCCAGGCTCCCTCTCACGTGCTGTGAGTTGGATAAATTTCTCCTCCCTGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037341.14
CDS TCA 72 bp CGGTACGTGGAAGACTGTGGAAACCAGTATCGTTACTaGGGCGAGATGGGAACACAACACCGGCTGAGTCAC +
Preference number: 6 (lower is better)
Translates to: RYVEDCGNQYRY*GEMGTQHRLSH
Trigger: GTGACTCAGCCGGTGTTGTGTTCCCATCTCGCCTCAGTAACGATACTGGTTTCCACAGTCTTCCACGTACCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS GCA 72 bp CTGTATATCCAGTTCTCATCATCGGCTTCCACCTGGTaGCCACAAACGGACAGCTCTCCATCACTGCGGAAC +
Preference number: 6 (lower is better)
Translates to: LYIQFSSSASTW*PQTDSSPSLRN
Trigger: GTTCCGCAGTGATGGAGAGCTGTCCGTTTGTGGGCACCAGGTGGAAGCCGATGATGAGAACTGGATATACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037341.14
CDS GCA 72 bp AAGCAGCTGTGTTGGGTTCCAGCAAGCCAGCTTCTCTaGCCTGTTGAGACAGGCAGCTCTTCGCATTTCTCT +
Preference number: 6 (lower is better)
Translates to: KQLCWVPASQLL*PVETGSSSHFS
Trigger: AGAGAAATGCGAAGAGCTGCCTGTCTCAACAGGGCAGAGAAGCTGGCTTGCTGGAACCCAACACAGCTGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CCA 72 bp CTTCTGTGTCTTCATCTTGATAATCGTCGCAGGGGCTaGAGCCGGCTGCAAAGGTGGGTCCCTGAGAATAGT +
Preference number: 6 (lower is better)
Translates to: LLCLHLDNRRRG*SRLQRWVPENS
Trigger: ACTATTCTCAGGGACCCACCTTTGCAGCCGGCTCCAGCCCCTGCGACGATTATCAAGATGAAGACACAGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 72 bp GCGTCTTCTCTTCTGGTGTTGGCAGCGGCAGGGACTTaGTCCAGTTTGTCTGAGTATGAAGGTCGGAGAAGT +
Preference number: 6 (lower is better)
Translates to: ASSLLVLAAAGT*SSLSEYEGRRS
Trigger: ACTTCTCCGACCTTCATACTCAGACAAACTGGACCAAGTCCCTGCCGCTGCCAACACCAGAAGAGAAGACGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 72 bp GCTGATGCAGTTATGTTTATAGGAACCACGTCAGCCTaGACCGTCTGGGCTTGCTGCCGCGTCTTCTCTTCT +
Preference number: 6 (lower is better)
Translates to: ADAVMFIGTTSA*TVWACCRVFSS
Trigger: AGAAGAGAAGACGCGGCAGCAAGCCCAGACGGTCCAGGCTGACGTGGTTCCTATAAACATAACTGCATCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000207038.2
CDS CCA 72 bp ATGCTGGACTCTCCAAAAACCTCAACTGCTGGGATTTaGGCCTCGAAAGCATCCCAGTACTCGACGCACCTC +
Preference number: 6 (lower is better)
Translates to: MLDSPKTSTAGI*ASKASQYSTHL
Trigger: GAGGTGCGTCGAGTACTGGGATGCTTTCGAGGCCCAAATCCCAGCAGTTGAGGTTTTTGGAGAGTCCAGCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 72 bp CTGTTTGCTGGGGCATTTAGAGAGACCTCTGAATCATaGAGGGATAACAGCGTGGTGGCACCAGGGACAGAG +
Preference number: 6 (lower is better)
Translates to: LFAGAFRETSES*RDNSVVAPGTE
Trigger: CTCTGTCCCTGGTGCCACCACGCTGTTATCCCTCCATGATTCAGAGGTCTCTCTAAATGCCCCAGCAAACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 72 bp TCCGTGTATTCCGACTTGACGCTACTTGTGTCGCTCTaGGACGGAGTGACCCCACACAGAGAATACACGTTG +
Preference number: 6 (lower is better)
Translates to: SVYSDLTLLVSL*DGVTPHREYTL
Trigger: CAACGTGTATTCTCTGTGTGGGGTCACTCCGTCCCAGAGCGACACAAGTAGCGTCAAGTCGGAATACACGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 72 bp GACTCTTCCTGTGTGGGGCCCGGTGATGTATTAGGTTaGACCATGGGGACATTGGCTTCCACAATGCTAGAG +
Preference number: 6 (lower is better)
Translates to: DSSCVGPGDVLG*TMGTLASTMLE
Trigger: CTCTAGCATTGTGGAAGCCAATGTCCCCATGGTCCAACCTAATACATCACCGGGCCCCACACAGGAAGAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CCA 72 bp TTCTCCCCAGTTATGTTTATAGGAACCACGTCAGCCTaGACCGTCTGGGCTTGCTGCCGCGTCTTCTCTTCT +
Preference number: 6 (lower is better)
Translates to: FSPVMFIGTTSA*TVWACCRVFSS
Trigger: AGAAGAGAAGACGCGGCAGCAAGCCCAGACGGTCCAGGCTGACGTGGTTCCTATAAACATAACTGGGGAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100054.4
ENSMUST00000162891.8
CDS CAA 72 bp CTCAGCTTGTCACATTCCCTCAGCACTGATTTGAGGTaGAGCTTGGCTTGGCGGTGCAGGTCCTCAACACAG +
Preference number: 6 (lower is better)
Translates to: LSLSHSLSTDLR*SLAWRCRSSTQ
Trigger: CTGTGTTGAGGACCTGCACCGCCAAGCCAAGCTCAACCTCAAATCAGTGCTGAGGGAATGTGACAAGCTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CAA 72 bp TCTTGCCTCAGCTTGTCACATTCCCTCAGCACTGATTaGAGGTTGAGCTTGGCTTGGCGGTGCAGGTCCTCA +
Preference number: 6 (lower is better)
Translates to: SCLSLSHSLSTD*RLSLAWRCRSS
Trigger: TGAGGACCTGCACCGCCAAGCCAAGCTCAACCTCAAATCAGTGCTGAGGGAATGTGACAAGCTGAGGCAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CAA 72 bp GAGAGAGCACTTTCGGTCTGCTTCTGTGTCTTCATCTaGATAATCGTCGCAGGGGCTGGAGCCGGCTGCAAA +
Preference number: 6 (lower is better)
Translates to: ERALSVCFCVFI*IIVAGAGAGCK
Trigger: TTTGCAGCCGGCTCCAGCCCCTGCGACGATTATCAAGATGAAGACACAGAAGCAGACCGAAAGTGCTCTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CAA 72 bp GGGCCCGGTGATGTATTAGGTTGGACCATGGGGACATaGGCTTCCACAATGCTAGAGGATAAGGACCCTGCA +
Preference number: 6 (lower is better)
Translates to: GPGDVLGWTMGT*ASTMLEDKDPA
Trigger: TGCAGGGTCCTTATCCTCTAGCATTGTGGAAGCCAATGTCCCCATGGTCCAACCTAATACATCACCGGGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS TCA 72 bp CATGGTCCTCTGAACACAGGGACCTGGTATCACCCTTaGGAGATGTTTGGTCCAAACTGCAGCTGCTCACGT +
Preference number: 6 (lower is better)
Translates to: HGPLNTGTWYHP*EMFGPNCSCSR
Trigger: ACGTGAGCAGCTGCAGTTTGGACCAAACATCTCTCAAGGGTGATACCAGGTCCCTGTGTTCAGAGGACCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 72 bp GCTCTCCATCACTGCGGAACAGCCTCTTTGTCTGCCTaGACAGGGAGGAGAAATTTATCCAACTCACAGCAC +
Preference number: 6 (lower is better)
Translates to: ALHHCGTASLSA*TGRRNLSNSQH
Trigger: GTGCTGTGAGTTGGATAAATTTCTCCTCCCTGTCCAGGCAGACAAAGAGGCTGTTCCGCAGTGATGGAGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037341.14
CDS CCA 72 bp CTCTCCTCGTCCAAGTTGGAAACCGCTTTTCTGGGCTaGGTCCTGTATATCCAGTTCTCATCATCGGCTTCC +
Preference number: 6 (lower is better)
Translates to: LSSSKLETAFLG*VLYIQFSSSAS
Trigger: GGAAGCCGATGATGAGAACTGGATATACAGGACCCAGCCCAGAAAAGCGGTTTCCAACTTGGACGAGGAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037341.14
CDS CCA 72 bp TGTAGTGGACAGTCCATCGACTCTCCTCGTCCAAGTTaGAAACCGCTTTTCTGGGCTGGGTCCTGTATATCC +
Preference number: 6 (lower is better)
Translates to: CSGQSIDSPRPS*KPLFWAGSCIS
Trigger: GGATATACAGGACCCAGCCCAGAAAAGCGGTTTCCAACTTGGACGAGGAGAGTCGATGGACTGTCCACTACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037341.14
CDS CAA 72 bp TCATGGTCCTCTGAACACAGGGACCTGGTATCACCCTaGAGAGATGTTTGGTCCAAACTGCAGCTGCTCACG +
Preference number: 6 (lower is better)
Translates to: SWSSEHRDLVSP*RDVWSKLQLLT
Trigger: CGTGAGCAGCTGCAGTTTGGACCAAACATCTCTCAAGGGTGATACCAGGTCCCTGTGTTCAGAGGACCATGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CAA 90 bp GAAACCACACATGCTGGACTCTCCAAAAACCTCAACTGCTGGGATTaGGGCCTCGAAAGCATCCCAGTACTCGACGCACCTCCTAAATGC +
Preference number: 6 (lower is better)
Translates to: ETTHAGLSKNLNCWD*GLESIPVLDAPPKC
Trigger: GCATTTAGGAGGTGCGTCGAGTACTGGGATGCTTTCGAGGCCCAAATCCCAGCAGTTGAGGTTTTTGGAGAGTCCAGCATGTGTGGTTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS TCA 72 bp TGCTGGAGCGAGGCGATCAGGCTCTCATTGAGCACCTaGCCGTTTGTCTGGTTGTTCTTTTTGGGAATCCTT +
Preference number: 6 (lower is better)
Translates to: CWSEAIRLSLST*PFVWLFFLGIL
Trigger: AAGGATTCCCAAAAAGAACAACCAGACAAACGGTCAGGTGCTCAATGAGAGCCTGATCGCCTCGCTCCAGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS GCA 72 bp GACAGCTCTCCATCACTGCGGAACAGCCTCTTTGTCTaGCTGGACAGGGAGGAGAAATTTATCCAACTCACA +
Preference number: 6 (lower is better)
Translates to: DSSPSLRNSLFV*LDREEKFIQLT
Trigger: TGTGAGTTGGATAAATTTCTCCTCCCTGTCCAGGCAGACAAAGAGGCTGTTCCGCAGTGATGGAGAGCTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037341.14
CDS GCA 72 bp GAAACCACACATGCTGGACTCTCCAAAAACCTCAACTaGTGGGATTTGGGCCTCGAAAGCATCCCAGTACTC +
Preference number: 6 (lower is better)
Translates to: ETTHAGLSKNLN*WDLGLESIPVL
Trigger: GAGTACTGGGATGCTTTCGAGGCCCAAATCCCAGCAGTTGAGGTTTTTGGAGAGTCCAGCATGTGTGGTTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 72 bp ATCGACTCTCCTCGTCCAAGTTGGAAACCGCTTTTCTaGGCTGGGTCCTGTATATCCAGTTCTCATCATCGG +
Preference number: 6 (lower is better)
Translates to: IDSPRPSWKPLF*AGSCISSSHHR
Trigger: CCGATGATGAGAACTGGATATACAGGACCCAGCCCAGAAAAGCGGTTTCCAACTTGGACGAGGAGAGTCGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037341.14
CDS CCA 72 bp GAACACAGGGACCTGGTATCACCCTTGAGAGATGTTTaGTCCAAACTGCAGCTGCTCACGTTACTTGTGGGA +
Preference number: 6 (lower is better)
Translates to: EHRDLVSPLRDV*SKLQLLTLLVG
Trigger: TCCCACAAGTAACGTGAGCAGCTGCAGTTTGGACCAAACATCTCTCAAGGGTGATACCAGGTCCCTGTGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 72 bp TTTGGGAATCCTTCGCAGAGAATCGGTCCGGGATGGTaGCAGGGGTGGTTTCTTTGCTTTCTTCAGAGAGAT +
Preference number: 6 (lower is better)
Translates to: FGNPSQRIGPGW*QGWFLCFLQRD
Trigger: ATCTCTCTGAAGAAAGCAAAGAAACCACCCCTGCCACCATCCCGGACCGATTCTCTGCGAAGGATTCCCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CAA 72 bp AAACGGACAGCTCTCCATCACTGCGGAACAGCCTCTTaGTCTGCCTGGACAGGGAGGAGAAATTTATCCAAC +
Preference number: 6 (lower is better)
Translates to: KRTALHHCGTAS*SAWTGRRNLSN
Trigger: GTTGGATAAATTTCTCCTCCCTGTCCAGGCAGACAAAGAGGCTGTTCCGCAGTGATGGAGAGCTGTCCGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037341.14
CDS TCA 72 bp CCCCGAATAACTACACTCGCTCTTGCCATCCACATCTaGAGGGTGGTCAGGAAAGCTTGGGTTGTTTCTACA +
Preference number: 6 (lower is better)
Translates to: PRITTLALAIHI*RVVRKAWVVST
Trigger: TGTAGAAACAACCCAAGCTTTCCTGACCACCCTTCAGATGTGGATGGCAAGAGCGAGTGTAGTTATTCGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS TCA 72 bp CGGGGAGGGAGAGTGATTTCGAGTGTGATCGTCTTCTaGGTCTTTCCGGCCAAGGACTTTCCTTTTAGATCT +
Preference number: 6 (lower is better)
Translates to: RGGRVISSVIVF*VFPAKDFPFRS
Trigger: AGATCTAAAAGGAAAGTCCTTGGCCGGAAAGACTCAGAAGACGATCACACTCGAAATCACTCTCCCTCCCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000207038.2
CDS CCA 72 bp GGGACGTACAGCGAATGGGCACTACCATCATCATCTTaGCCAGTGGCTGATGCAGTTATGTTTATAGGAACC +
Preference number: 6 (lower is better)
Translates to: GTYSEWALPSSS*PVADAVMFIGT
Trigger: GGTTCCTATAAACATAACTGCATCAGCCACTGGCCAAGATGATGATGGTAGTGCCCATTCGCTGTACGTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037341.14
ENSMUST00000207038.2
CDS CCA 72 bp CCAGAGTGTCTGTGTAAATTAGAGACCGCCGAAGGCTaGCCTGACGATCGAAATTCTCCCCAGTTATGTTTA +
Preference number: 6 (lower is better)
Translates to: PECLCKLETAEG*PDDRNSPQLCL
Trigger: TAAACATAACTGGGGAGAATTTCGATCGTCAGGCCAGCCTTCGGCGGTCTCTAATTTACACAGACACTCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100054.4
ENSMUST00000162891.8
CDS CAA 90 bp CTTTCACAGAACATCTGGGTGTGGGACGGTCTCTGGGTTTTATTTTaGAATATGAAGATGAACCGGGTGTTCTACTGTCCAGCTGTCCTG +
Preference number: 6 (lower is better)
Translates to: LSQNIWVWDGLWVLF*NMKMNRVFYCPAVL
Trigger: CAGGACAGCTGGACAGTAGAACACCCGGTTCATCTTCATATTCAAAAATAAAACCCAGAGACCGTCCCACACCCAGATGTTCTGTGAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS TCA 72 bp CCAGTTTGTCTGAGTATGAAGGTCGGAGAAGTCACCTaGGGTTGGCGTTTTAGGTCTCCTGATTCCGATAAA +
Preference number: 6 (lower is better)
Translates to: PVCLSMKVGEVT*GWRFRSPDSDK
Trigger: TTTATCGGAATCAGGAGACCTAAAACGCCAACCTCAGGTGACTTCTCCGACCTTCATACTCAGACAAACTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS TCA 72 bp ATTTGGGATGACACTGGTAGAGTAGGCTGCATGAGGTaGAACCACACATGCTGGACTCTCCAAAAACCTCAA +
Preference number: 6 (lower is better)
Translates to: IWDDTGRVGCMR*NHTCWTLQKPQ
Trigger: TTGAGGTTTTTGGAGAGTCCAGCATGTGTGGTTTCACCTCATGCAGCCTACTCTACCAGTGTCATCCCAAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 72 bp GATGGACATAGAAGAGATCAGAGACGATTTTCTTTCTaGTACCTTGGGCTTGGCCTTCCCCTTTCCATTTGC +
Preference number: 6 (lower is better)
Translates to: DGHRRDQRRFSF*YLGLGLPLSIC
Trigger: GCAAATGGAAAGGGGAAGGCCAAGCCCAAGGTACCAGAAAGAAAATCGTCTCTGATCTCTTCTATGTCCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS TCA 72 bp CATCTTGGCCAGTGGCTGATGCTAGCTCCTTCTGAATaGTGTCAGGGATTCCTGAAATTGTCTTTCTCCTTT +
Preference number: 6 (lower is better)
Translates to: HLGQWLMLAPSE*CQGFLKLSFSF
Trigger: AAAGGAGAAAGACAATTTCAGGAATCCCTGACATCATTCAGAAGGAGCTAGCATCAGCCACTGGCCAAGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100054.4
ENSMUST00000162891.8
CDS CCA 72 bp CAGGAAAGCTTGGGTTGTTTCTACAATGATAGAGTATaGCTTGGGATCCATTTTCCCTGTTTGCTGGGGCAT +
Preference number: 6 (lower is better)
Translates to: QESLGCFYNDRV*LGIHFPCLLGH
Trigger: ATGCCCCAGCAAACAGGGAAAATGGATCCCAAGCCATACTCTATCATTGTAGAAACAACCCAAGCTTTCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CAA 90 bp GAGATGGACATAGAAGAGATCAGAGACGATTTTCTTTCTGGTACCTaGGGCTTGGCCTTCCCCTTTCCATTTGCTGGTGACATTGATTTT +
Preference number: 6 (lower is better)
Translates to: EMDIEEIRDDFLSGT*GLAFPFPFAGDIDF
Trigger: AAAATCAATGTCACCAGCAAATGGAAAGGGGAAGGCCAAGCCCAAGGTACCAGAAAGAAAATCGTCTCTGATCTCTTCTATGTCCATCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CCA 72 bp GGGACTGATGGTCATCTTTCACAGAACATCTGGGTGTaGGACGGTCTCTGGGTTTTATTTTTGAATATGAAG +
Preference number: 6 (lower is better)
Translates to: GTDGHLSQNIWV*DGLWVLFLNMK
Trigger: CTTCATATTCAAAAATAAAACCCAGAGACCGTCCCACACCCAGATGTTCTGTGAAAGATGACCATCAGTCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2
CDS CAA 72 bp AATGATAGAGTATGGCTTGGGATCCATTTTCCCTGTTaGCTGGGGCATTTAGAGAGACCTCTGAATCATGGA +
Preference number: 6 (lower is better)
Translates to: NDRVWLGIHFPC*LGHLERPLNHG
Trigger: TCCATGATTCAGAGGTCTCTCTAAATGCCCCAGCAAACAGGGAAAATGGATCCCAAGCCATACTCTATCATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000037341.14
ENSMUST00000100054.4
ENSMUST00000162891.8
ENSMUST00000207038.2