RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NHP2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000001056

Ensembl transcript IDs: ENSMUST00000127405.2

Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ACACAGCAAGAAATCGGGGAGATGCTGTTAGGGTGGGCAGCTGCCTaGAGCCAGCCAGATCTCTTGGAAAGGGGCTGGGTTGCAGCCCAA +
Preference number: 1 (lower is better)
Translates to: TQQEIGEMLLGWAAA*SQPDLLERGWVAAQ
Trigger: TTGGGCTGCAACCCAGCCCCTTTCCAAGAGATCTGGCTGGCTGCAGGCAGCTGCCCACCCTAACAGCATCTCCCCGATTTCTTGCTGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR CCA 90 bp CTGGGAAGACTCACACAGCAAGAAATCGGGGAGATGCTGTTAGGGTaGGCAGCTGCCTGCAGCCAGCCAGATCTCTTGGAAAGGGGCTGG +
Preference number: 1 (lower is better)
Translates to: LGRLTQQEIGEMLLG*AAACSQPDLLERGW
Trigger: CCAGCCCCTTTCCAAGAGATCTGGCTGGCTGCAGGCAGCTGCCCACCCTAACAGCATCTCCCCGATTTCTTGCTGTGTGAGTCTTCCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR TCA 90 bp GGGTGGGCTGTAGAGCCAGTGCAGAACATTTGCCAGGTACACCCTTaGGGCTCTGTGCTGAAAGGCTGCTTTTGCTCCTCCTGCCAACTT +
Preference number: 1 (lower is better)
Translates to: GWAVEPVQNICQVHP*GSVLKGCFCSSCQL
Trigger: AAGTTGGCAGGAGGAGCAAAAGCAGCCTTTCAGCACAGAGCCTCAAGGGTGTACCTGGCAAATGTTCTGCACTGGCTCTACAGCCCACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR GCA 90 bp AGGAGATGGCAGAGATGCAGGCTCCACCTCCAACACTGCTGGAGCTaGCTGGGAAGACTCACACAGCAAGAAATCGGGGAGATGCTGTTA +
Preference number: 1 (lower is better)
Translates to: RRWQRCRLHLQHCWS*LGRLTQQEIGEMLL
Trigger: TAACAGCATCTCCCCGATTTCTTGCTGTGTGAGTCTTCCCAGGCAGCTCCAGCAGTGTTGGAGGTGGAGCCTGCATCTCTGCCATCTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR GCA 90 bp TTCTTGGAACTGTCTTCATCAAAGCTCAGGAGGAGATGGCAGAGATaGAGGCTCCACCTCCAACACTGCTGGAGCTGCCTGGGAAGACTC +
Preference number: 1 (lower is better)
Translates to: FLELSSSKLRRRWQR*RLHLQHCWSCLGRL
Trigger: GAGTCTTCCCAGGCAGCTCCAGCAGTGTTGGAGGTGGAGCCTGCATCTCTGCCATCTCCTCCTGAGCTTTGATGAAGACAGTTCCAAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR TCA 90 bp AGCCAGTGCAGAACATTTGCCAGGTACACCCTTGAGGCTCTGTGCTaGAAGGCTGCTTTTGCTCCTCCTGCCAACTTCAAGAACACCCAC +
Preference number: 1 (lower is better)
Translates to: SQCRTFARYTLEALC*KAAFAPPANFKNTH
Trigger: GTGGGTGTTCTTGAAGTTGGCAGGAGGAGCAAAAGCAGCCTTTCAGCACAGAGCCTCAAGGGTGTACCTGGCAAATGTTCTGCACTGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR CCA 90 bp TATCCCACATTCTTGGAACTGTCTTCATCAAAGCTCAGGAGGAGATaGCAGAGATGCAGGCTCCACCTCCAACACTGCTGGAGCTGCCTG +
Preference number: 1 (lower is better)
Translates to: YPTFLELSSSKLRRR*QRCRLHLQHCWSCL
Trigger: CAGGCAGCTCCAGCAGTGTTGGAGGTGGAGCCTGCATCTCTGCCATCTCCTCCTGAGCTTTGATGAAGACAGTTCCAAGAATGTGGGATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR TCA 90 bp CATGGTCTTGTGTGTATATATATGCGTATCACTCTTGGAGGTGTGTaGAGTGGGGTTTGGGCCTTGATGCCTCATCTCCTCACCCCAACT +
Preference number: 1 (lower is better)
Translates to: HGLVCIYMRITLGGV*SGVWALMPHLLTPT
Trigger: AGTTGGGGTGAGGAGATGAGGCATCAAGGCCCAAACCCCACTTCACACACCTCCAAGAGTGATACGCATATATATACACACAAGACCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR GCA 90 bp GGCTGCTTTTGCTCCTCCTGCCAACTTCAAGAACACCCACACACTTaGCACGTTTTCGCCTTAGCATTTACTTCTATCCCACATTCTTGG +
Preference number: 1 (lower is better)
Translates to: GCFCSSCQLQEHPHT*HVFALAFTSIPHSW
Trigger: CCAAGAATGTGGGATAGAAGTAAATGCTAAGGCGAAAACGTGGCAAGTGTGTGGGTGTTCTTGAAGTTGGCAGGAGGAGCAAAAGCAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR CCA 90 bp CCAATGATTGCATGGTCTTGTGTGTATATATATGCGTATCACTCTTaGAGGTGTGTGAAGTGGGGTTTGGGCCTTGATGCCTCATCTCCT +
Preference number: 1 (lower is better)
Translates to: PMIAWSCVYIYAYHS*RCVKWGLGLDASSP
Trigger: AGGAGATGAGGCATCAAGGCCCAAACCCCACTTCACACACCTCCAAGAGTGATACGCATATATATACACACAAGACCATGCAATCATTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR-3UTR CCA 90 bp AAGTGGGGTTTGGGCCTTGATGCCTCATCTCCTCACCCCAACTGTCCTAGAGTGCACCTCCAACACTGCTaGAGCTGCCTGGGAAGACTC +
Preference number: 2 (lower is better)
Translates to: KWGLGLDASSPHPNCPRVHLQHC*SCLGRL
Trigger: GAGTCTTCCCAGGCAGCTCCAGCAGTGTTGGAGGTG...CACTCTAGGACAGTTGGGGTGAGGAGATGAGGCATCAAGGCCCAAACCCCACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR-3UTR TCA 90 bp GCCTTGATGCCTCATCTCCTCACCCCAACTGTCCTAGAGTGGGAAATGAAGACGCTTGAGGCTCTGTGCTaGAAGGCTGCTTTTGCTCCT +
Preference number: 2 (lower is better)
Translates to: ALMPHLLTPTVLEWEMKTLEALC*KAAFAP
Trigger: AGGAGCAAAAGCAGCCTTTCAGCACAGAGCCTCAAG...CGTCTTCATTTCCCACTCTAGGACAGTTGGGGTGAGGAGATGAGGCATCAAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR-3UTR CCA 90 bp TCTTGTGTGTATATATATGCGTATCACTCTTGGAGGTGTGTGAAGTGGGGTTTGGAGATGCTGTTAGGGTaGGCAGCTGCCTGCAGCCAG +
Preference number: 2 (lower is better)
Translates to: SCVYIYAYHSWRCVKWGLEMLLG*AAACSQ
Trigger: CTGGCTGCAGGCAGCTGCCCACCCTAACAGCATCTC...CAAACCCCACTTCACACACCTCCAAGAGTGATACGCATATATATACACACAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR CAA 90 bp AGGCTGCTTTTGCTCCTCCTGCCAACTTCAAGAACACCCACACACTaGCCACGTTTTCGCCTTAGCATTTACTTCTATCCCACATTCTTG +
Preference number: 2 (lower is better)
Translates to: RLLLLLLPTSRTPTH*PRFRLSIYFYPTFL
Trigger: CAAGAATGTGGGATAGAAGTAAATGCTAAGGCGAAAACGTGGCAAGTGTGTGGGTGTTCTTGAAGTTGGCAGGAGGAGCAAAAGCAGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR-3UTR GCA 90 bp TCTTGTGTGTATATATATGCGTATCACTCTTGGAGGTGTGTGAAGTGGGGTTTGCTGAAAGGCTGCTTTTaGTCCTCCTGCCAACTTCAA +
Preference number: 2 (lower is better)
Translates to: SCVYIYAYHSWRCVKWGLLKGCF*SSCQLQ
Trigger: TTGAAGTTGGCAGGAGGAGCAAAAGCAGCCTTTCAG...CAAACCCCACTTCACACACCTCCAAGAGTGATACGCATATATATACACACAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR CAA 90 bp GCAAATATATTCATAGCCCTTCTCCTTACCAATGATTGCATGGTCTaGTGTGTATATATATGCGTATCACTCTTGGAGGTGTGTGAAGTG +
Preference number: 2 (lower is better)
Translates to: ANIFIALLLTNDCMV*CVYICVSLLEVCEV
Trigger: CACTTCACACACCTCCAAGAGTGATACGCATATATATACACACAAGACCATGCAATCATTGGTAAGGAGAAGGGCTATGAATATATTTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR GCA 72 bp GAAATCGGGGAGATGCTGTTAGGGTGGGCAGCTGCCTaGAGCCAGCCAGATCTCTTGGAAAGGGGCTGGGTT +
Preference number: 3 (lower is better)
Translates to: EIGEMLLGWAAA*SQPDLLERGWV
Trigger: AACCCAGCCCCTTTCCAAGAGATCTGGCTGGCTGCAGGCAGCTGCCCACCCTAACAGCATCTCCCCGATTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR GCA 72 bp GCAAGAAATCGGGGAGATGCTGTTAGGGTGGGCAGCTaGCTGCAGCCAGCCAGATCTCTTGGAAAGGGGCTG +
Preference number: 3 (lower is better)
Translates to: ARNRGDAVRVGS*LQPARSLGKGL
Trigger: CAGCCCCTTTCCAAGAGATCTGGCTGGCTGCAGGCAGCTGCCCACCCTAACAGCATCTCCCCGATTTCTTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR GCA 72 bp CAGAGATGCAGGCTCCACCTCCAACACTGCTGGAGCTaGCTGGGAAGACTCACACAGCAAGAAATCGGGGAG +
Preference number: 3 (lower is better)
Translates to: QRCRLHLQHCWS*LGRLTQQEIGE
Trigger: CTCCCCGATTTCTTGCTGTGTGAGTCTTCCCAGGCAGCTCCAGCAGTGTTGGAGGTGGAGCCTGCATCTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR CCA 72 bp GATGCAGGCTCCACCTCCAACACTGCTGGAGCTGCCTaGGAAGACTCACACAGCAAGAAATCGGGGAGATGC +
Preference number: 3 (lower is better)
Translates to: DAGSTSNTAGAA*EDSHSKKSGRC
Trigger: GCATCTCCCCGATTTCTTGCTGTGTGAGTCTTCCCAGGCAGCTCCAGCAGTGTTGGAGGTGGAGCCTGCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR GCA 72 bp AGGAGATGGCAGAGATGCAGGCTCCACCTCCAACACTaGTGGAGCTGCCTGGGAAGACTCACACAGCAAGAA +
Preference number: 3 (lower is better)
Translates to: RRWQRCRLHLQH*WSCLGRLTQQE
Trigger: TTCTTGCTGTGTGAGTCTTCCCAGGCAGCTCCAGCAGTGTTGGAGGTGGAGCCTGCATCTCTGCCATCTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR GCA 72 bp CTGTCTTCATCAAAGCTCAGGAGGAGATGGCAGAGATaGAGGCTCCACCTCCAACACTGCTGGAGCTGCCTG +
Preference number: 3 (lower is better)
Translates to: LSSSKLRRRWQR*RLHLQHCWSCL
Trigger: CAGGCAGCTCCAGCAGTGTTGGAGGTGGAGCCTGCATCTCTGCCATCTCCTCCTGAGCTTTGATGAAGACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR CCA 72 bp CTCACACAGCAAGAAATCGGGGAGATGCTGTTAGGGTaGGCAGCTGCCTGCAGCCAGCCAGATCTCTTGGAA +
Preference number: 3 (lower is better)
Translates to: LTQQEIGEMLLG*AAACSQPDLLE
Trigger: TTCCAAGAGATCTGGCTGGCTGCAGGCAGCTGCCCACCCTAACAGCATCTCCCCGATTTCTTGCTGTGTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR CCA 72 bp AGATGGCAGAGATGCAGGCTCCACCTCCAACACTGCTaGAGCTGCCTGGGAAGACTCACACAGCAAGAAATC +
Preference number: 3 (lower is better)
Translates to: RWQRCRLHLQHC*SCLGRLTQQEI
Trigger: GATTTCTTGCTGTGTGAGTCTTCCCAGGCAGCTCCAGCAGTGTTGGAGGTGGAGCCTGCATCTCTGCCATCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR CCA 72 bp TTCTTGGAACTGTCTTCATCAAAGCTCAGGAGGAGATaGCAGAGATGCAGGCTCCACCTCCAACACTGCTGG +
Preference number: 3 (lower is better)
Translates to: FLELSSSKLRRR*QRCRLHLQHCW
Trigger: CCAGCAGTGTTGGAGGTGGAGCCTGCATCTCTGCCATCTCCTCCTGAGCTTTGATGAAGACAGTTCCAAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR TCA 72 bp AGAACATTTGCCAGGTACACCCTTGAGGCTCTGTGCTaGAAGGCTGCTTTTGCTCCTCCTGCCAACTTCAAG +
Preference number: 3 (lower is better)
Translates to: RTFARYTLEALC*KAAFAPPANFK
Trigger: CTTGAAGTTGGCAGGAGGAGCAAAAGCAGCCTTTCAGCACAGAGCCTCAAGGGTGTACCTGGCAAATGTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR-3UTR CAA 90 bp AAGTGGGGTTTGGGCCTTGATGCCTCATCTCCTCACCCCAACTGTCCTAGAGTGTTCTATCCCACATTCTaGGAACTGTCTTCATCAAAG +
Preference number: 3 (lower is better)
Translates to: KWGLGLDASSPHPNCPRVFYPTF*ELSSSK
Trigger: CTTTGATGAAGACAGTTCCAAGAATGTGGGATAGAA...CACTCTAGGACAGTTGGGGTGAGGAGATGAGGCATCAAGGCCCAAACCCCACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR TCA 72 bp GTGTGTATATATATGCGTATCACTCTTGGAGGTGTGTaGAGTGGGGTTTGGGCCTTGATGCCTCATCTCCTC +
Preference number: 3 (lower is better)
Translates to: VCIYMRITLGGV*SGVWALMPHLL
Trigger: GAGGAGATGAGGCATCAAGGCCCAAACCCCACTTCACACACCTCCAAGAGTGATACGCATATATATACACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR GCA 72 bp TGCTCCTCCTGCCAACTTCAAGAACACCCACACACTTaGCACGTTTTCGCCTTAGCATTTACTTCTATCCCA +
Preference number: 3 (lower is better)
Translates to: CSSCQLQEHPHT*HVFALAFTSIP
Trigger: TGGGATAGAAGTAAATGCTAAGGCGAAAACGTGGCAAGTGTGTGGGTGTTCTTGAAGTTGGCAGGAGGAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR GCA 72 bp GCAAATATATTCATAGCCCTTCTCCTTACCAATGATTaGATGGTCTTGTGTGTATATATATGCGTATCACTC +
Preference number: 3 (lower is better)
Translates to: ANIFIALLLTND*MVLCVYICVSL
Trigger: GAGTGATACGCATATATATACACACAAGACCATGCAATCATTGGTAAGGAGAAGGGCTATGAATATATTTGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR TCA 72 bp TTGAGCAAATATATTCATAGCCCTTCTCCTTACCAATaGTTGCATGGTCTTGTGTGTATATATATGCGTATC +
Preference number: 3 (lower is better)
Translates to: LSKYIHSPSPYQ*LHGLVCIYMRI
Trigger: GATACGCATATATATACACACAAGACCATGCAATCATTGGTAAGGAGAAGGGCTATGAATATATTTGCTCAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
CDS-3UTR GCA 90 bp TCAAGAACACCCACACACTTGCCACGTTTTCGCCTTAGCATTTACTTCTATCCCACGTGCGCTCCTCGCTaGAGCCCTCCGCCTGCGCCT +
Preference number: 4 (lower is better)
Translates to: SRTPTHLPRFRLSIYFYPTCAPR*SPPPAP
Trigger: AGGCGCAGGCGGAGGGCTGCAGCGAGGAGCGCACGT...GGGATAGAAGTAAATGCTAAGGCGAAAACGTGGCAAGTGTGTGGGTGTTCTTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
CDS-3UTR GCA 90 bp CTGCCTGCAGCCAGCCAGATCTCTTGGAAAGGGGCTGGGTTGCAGCCCAAGTCTCGACGAATCTGCTTCTaGTTCACAGCCTTCTTGATG +
Preference number: 4 (lower is better)
Translates to: LPAASQISWKGAGLQPKSRRICF*FTAFLM
Trigger: CATCAAGAAGGCTGTGAAGCAGAAGCAGATTCGTCG...AGACTTGGGCTGCAACCCAGCCCCTTTCCAAGAGATCTGGCTGGCTGCAGGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
CDS-3UTR CCA 90 bp GGAAGACTCACACAGCAAGAAATCGGGGAGATGCTGTTAGGGTGGGCAGCTGCCCACAGAACTGGAAGATaGCAGTACACCTCAATCGGC +
Preference number: 4 (lower is better)
Translates to: GRLTQQEIGEMLLGWAAAHRTGR*QYTSIG
Trigger: GCCGATTGAGGTGTACTGCCATCTTCCAGTTCTGTG...GGCAGCTGCCCACCCTAACAGCATCTCCCCGATTTCTTGCTGTGTGAGTCTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR CAA 72 bp TATGCGTATCACTCTTGGAGGTGTGTGAAGTGGGGTTaGGGCCTTGATGCCTCATCTCCTCACCCCAACTGT +
Preference number: 4 (lower is better)
Translates to: YAYHSWRCVKWG*GLDASSPHPNC
Trigger: ACAGTTGGGGTGAGGAGATGAGGCATCAAGGCCCAAACCCCACTTCACACACCTCCAAGAGTGATACGCATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
CDS-3UTR GCA 90 bp GCCCTTCTCCTTACCAATGATTGCATGGTCTTGTGTGTATATATATGCGTATCAGGTGTAGGCAGTGCCTaGACCTCCTCCAGGCACTTG +
Preference number: 4 (lower is better)
Translates to: ALLLTNDCMVLCVYICVSGVGSA*TSSRHL
Trigger: CAAGTGCCTGGAGGAGGTGCAGGCACTGCCTACACC...TGATACGCATATATATACACACAAGACCATGCAATCATTGGTAAGGAGAAGGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR CAA 72 bp TTGCTCCTCCTGCCAACTTCAAGAACACCCACACACTaGCCACGTTTTCGCCTTAGCATTTACTTCTATCCC +
Preference number: 4 (lower is better)
Translates to: LLLLPTSRTPTH*PRFRLSIYFYP
Trigger: GGGATAGAAGTAAATGCTAAGGCGAAAACGTGGCAAGTGTGTGGGTGTTCTTGAAGTTGGCAGGAGGAGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
CDS-3UTR TCA 90 bp TCTTGTGTGTATATATATGCGTATCACTCTTGGAGGTGTGTGAAGTGGGGTTTGGCTTCACAGCCTTCTTaGTGCACTTGTAGAGCTTGC +
Preference number: 4 (lower is better)
Translates to: SCVYIYAYHSWRCVKWGLASQPS*CTCRAC
Trigger: GCAAGCTCTACAAGTGCATCAAGAAGGCTGTGAAGC...CAAACCCCACTTCACACACCTCCAAGAGTGATACGCATATATATACACACAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2
3UTR CAA 72 bp TTCATAGCCCTTCTCCTTACCAATGATTGCATGGTCTaGTGTGTATATATATGCGTATCACTCTTGGAGGTG +
Preference number: 4 (lower is better)
Translates to: FIALLLTNDCMV*CVYICVSLLEV
Trigger: CACCTCCAAGAGTGATACGCATATATATACACACAAGACCATGCAATCATTGGTAAGGAGAAGGGCTATGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127405.2