Pregenerated sensors for NHLRC4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000090113Ensembl transcript IDs: ENSMUST00000085027.4
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCTATGTGCCCTACCAGGACACATGTTGGCCTTACCCCTCTGATTTaGCTACTCCTTACCTCTCTGTTGGGCCCAGAGTGCTGTTGGAGG | + |
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Preference number: 1 (lower is better) Translates to: AMCPTRTHVGLTPLI*LLLTSLLGPECCWR Trigger: CCTCCAACAGCACTCTGGGCCCAACAGAGAGGTAAGGAGTAGGCAAATCAGAGGGGTAAGGCCAACATGTGTCCTGGTAGGGCACATAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR GCA 90 bp | CTTTCAAAACAGGGAGTGTCCAGTAGAGGACCTGCCCTTGCTATGTaGCCTACCAGGACACATGTTGGCCTTACCCCTCTGATTTGCCTA | + |
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Preference number: 1 (lower is better) Translates to: LSKQGVSSRGPALAM*PTRTHVGLTPLICL Trigger: TAGGCAAATCAGAGGGGTAAGGCCAACATGTGTCCTGGTAGGGCACATAGCAAGGGCAGGTCCTCTACTGGACACTCCCTGTTTTGAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR TCA 90 bp | GATCTCATCTGTAACATGGGAGGAAAGGCTACTGTTTTCCTGTCTTaGATGGAAGGGTATGAAAGAACCTGTGCTACCCAGAACCGTCCC | + |
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Preference number: 1 (lower is better) Translates to: DLICNMGGKATVFLS*MEGYERTCATQNRP Trigger: GGGACGGTTCTGGGTAGCACAGGTTCTTTCATACCCTTCCATTCAAGACAGGAAAACAGTAGCCTTTCCTCCCATGTTACAGATGAGATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR CCA 90 bp | GTGGAGATGGCCCAGTTTAGAACCTCATCAAGAAATGGTGATTCATaGTTTCTGTGTAGACAGGGGCACTTGCCAAGAGGAAATCACAAA | + |
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Preference number: 1 (lower is better) Translates to: VEMAQFRTSSRNGDS*FLCRQGHLPRGNHK Trigger: TTTGTGATTTCCTCTTGGCAAGTGCCCCTGTCTACACAGAAACCATGAATCACCATTTCTTGATGAGGTTCTAAACTGGGCCATCTCCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR-3UTR TCA 90 bp | CACACACACACACACACACACACACACACACACACACACCCCTCCCCTTCCAGACTGCCTGCCTGCCTCTaGTTAGGATGTAGGGGTTGG | + |
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Preference number: 2 (lower is better) Translates to: HTHTHTHTHTHTHPSPSRLPACL*LGCRGW Trigger: CCAACCCCTACATCCTAATCAGAGGCAGGCAGGCAG...TCTGGAAGGGGAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR CAA 90 bp | TGCTATGTGCCCTACCAGGACACATGTTGGCCTTACCCCTCTGATTaGCCTACTCCTTACCTCTCTGTTGGGCCCAGAGTGCTGTTGGAG | + |
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Preference number: 2 (lower is better) Translates to: CYVPYQDTCWPYPSD*PTPYLSVGPRVLLE Trigger: CTCCAACAGCACTCTGGGCCCAACAGAGAGGTAAGGAGTAGGCAAATCAGAGGGGTAAGGCCAACATGTGTCCTGGTAGGGCACATAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR-3UTR TCA 90 bp | GTTGACCTCAACGTCCAGATGACAGGCTGGGTGCCACCCCACACCCTAAAGGAGTTGCTTCTTCCCACATaGAGAACATGGGTGAGACCA | + |
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Preference number: 2 (lower is better) Translates to: VDLNVQMTGWVPPHTLKELLLPT*RTWVRP Trigger: TGGTCTCACCCATGTTCTTCATGTGGGAAGAAGCAA...CTCCTTTAGGGTGTGGGGTGGCACCCAGCCTGTCATCTGGACGTTGAGGTCAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR-3UTR CCA 90 bp | CACACACACACACACACACACACACACACACACACACACCCCTCCCCTTCCAGATCCTTACCTCTCTGTTaGGCCCAGAGTGCTGTTGGA | + |
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Preference number: 2 (lower is better) Translates to: HTHTHTHTHTHTHPSPSRSLPLC*AQSAVG Trigger: TCCAACAGCACTCTGGGCCCAACAGAGAGGTAAGGA...TCTGGAAGGGGAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR-3UTR TCA 90 bp | CACACACACACACACACACACACACACACACACACACACCCCTCCCCTTCCAGATTGGCCTTACCCCTCTaGTTTGCCTACTCCTTACCT | + |
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Preference number: 2 (lower is better) Translates to: HTHTHTHTHTHTHPSPSRLALPL*FAYSLP Trigger: AGGTAAGGAGTAGGCAAATCAGAGGGGTAAGGCCAA...TCTGGAAGGGGAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR-3UTR TCA 90 bp | GTTGACCTCAACGTCCAGATGACAGGCTGGGTGCCACCCCACACCCTAAAGGAGTGGGTTTTAGGGGCATaGAAACCTATGAGCATACTT | + |
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Preference number: 2 (lower is better) Translates to: VDLNVQMTGWVPPHTLKEWVLGA*KPMSIL Trigger: AAGTATGCTCATAGGTTTTCATGCCCCTAAAACCCA...CTCCTTTAGGGTGTGGGGTGGCACCCAGCCTGTCATCTGGACGTTGAGGTCAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR-3UTR GCA 90 bp | ACACACACACACACACACACACACACACCCCTCCCCTTCCAGATCTCATCTGTATCTTGCCTAGCTATCTaGTGGCAGACAGCCTCAGCA | + |
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Preference number: 2 (lower is better) Translates to: THTHTHTHTPLPFQISSVSCLAI*WQTASA Trigger: TGCTGAGGCTGTCTGCCAGCAGATAGCTAGGCAAGA...TACAGATGAGATCTGGAAGGGGAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR-3UTR GCA 90 bp | ACACACACACACACACACACACACACACCCCTCCCCTTCCAGATCTCATCTGTAAGCACCCCACCTAAGTaGTCAAAAGTGGTTTGGACC | + |
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Preference number: 2 (lower is better) Translates to: THTHTHTHTPLPFQISSVSTPPK*SKVVWT Trigger: GGTCCAAACCACTTTTGAGCACTTAGGTGGGGTGCT...TACAGATGAGATCTGGAAGGGGAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR-3UTR GCA 90 bp | ACACACACACACACACACACACACACACCCCTCCCCTTCCAGATCTCATCTGTAGTAGACAGGGGCACTTaGCAAGAGGAAATCACAAAG | + |
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Preference number: 2 (lower is better) Translates to: THTHTHTHTPLPFQISSVVDRGT*QEEITK Trigger: CTTTGTGATTTCCTCTTGGCAAGTGCCCCTGTCTAC...TACAGATGAGATCTGGAAGGGGAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR-3UTR GCA 90 bp | GTTTGGACCTGGATTGAAGGGAAAACTGAAGGTATCTTTCAAAACAGGGAGTGTCCCTGCCTGCCTGCCTaGCTGCCTCTGATTAGGATG | + |
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Preference number: 2 (lower is better) Translates to: VWTWIEGKTEGIFQNRECPCLPA*LPLIRM Trigger: CATCCTAATCAGAGGCAGGCAGGCAGGCAGGCAGGG...ACACTCCCTGTTTTGAAAGATACCTTCAGTTTTCCCTTCAATCCAGGTCCAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR GCA 72 bp | GGGGGAACACTAAGGGACCACACCCTTCCCCTAAACTaGCCAACCCAGCCTAGCCACACCCTCCCTGCCTGC | + |
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Preference number: 3 (lower is better) Translates to: GGTLRDHTLPLN*PTQPSHTLPAC Trigger: GCAGGCAGGGAGGGTGTGGCTAGGCTGGGTTGGGCAGTTTAGGGGAAGGGTGTGGTCCCTTAGTGTTCCCCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR-3UTR CAA 90 bp | GTTGACCTCAACGTCCAGATGACAGGCTGGGTGCCACCCCACACCCTAAAGGAGGGGCCCAGAGTGCTGTaGGAGGCTCAAGAATGGGAA | + |
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Preference number: 3 (lower is better) Translates to: VDLNVQMTGWVPPHTLKEGPRVL*EAQEWE Trigger: TTCCCATTCTTGAGCCTCCAACAGCACTCTGGGCCC...CTCCTTTAGGGTGTGGGGTGGCACCCAGCCTGTCATCTGGACGTTGAGGTCAAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR GCA 72 bp | CAGGGAGTGTCCAGTAGAGGACCTGCCCTTGCTATGTaGCCTACCAGGACACATGTTGGCCTTACCCCTCTG | + |
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Preference number: 3 (lower is better) Translates to: QGVSSRGPALAM*PTRTHVGLTPL Trigger: CAGAGGGGTAAGGCCAACATGTGTCCTGGTAGGGCACATAGCAAGGGCAGGTCCTCTACTGGACACTCCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR GCA 72 bp | GGTTGGACACCTGGCAGGAGATCTTGCCTAGCTATCTaGTGGCAGACAGCCTCAGCACCCAGGATCTATAGC | + |
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Preference number: 3 (lower is better) Translates to: GWTPGRRSCLAI*WQTASAPRIYS Trigger: GCTATAGATCCTGGGTGCTGAGGCTGTCTGCCAGCAGATAGCTAGGCAAGATCTCCTGCCAGGTGTCCAACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR-3UTR CAA 90 bp | CACACACACACACACACACACACACACACCCCTCCCCTTCCAGATCTCATCTGTCTCCTTACCTCTCTGTaGGGCCCAGAGTGCTGTTGG | + |
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Preference number: 3 (lower is better) Translates to: HTHTHTHTHTPPLPDLICLLTSL*GPECCW Trigger: CCAACAGCACTCTGGGCCCAACAGAGAGGTAAGGAG...ACAGATGAGATCTGGAAGGGGAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR GCA 72 bp | CCTACCAGGACACATGTTGGCCTTACCCCTCTGATTTaGCTACTCCTTACCTCTCTGTTGGGCCCAGAGTGC | + |
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Preference number: 3 (lower is better) Translates to: PTRTHVGLTPLI*LLLTSLLGPEC Trigger: GCACTCTGGGCCCAACAGAGAGGTAAGGAGTAGGCAAATCAGAGGGGTAAGGCCAACATGTGTCCTGGTAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR CCA 72 bp | TGGACACCTGGCAGGAGATCTTGCCTAGCTATCTGCTaGCAGACAGCCTCAGCACCCAGGATCTATAGCTTC | + |
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Preference number: 3 (lower is better) Translates to: WTPGRRSCLAIC*QTASAPRIYSF Trigger: GAAGCTATAGATCCTGGGTGCTGAGGCTGTCTGCCAGCAGATAGCTAGGCAAGATCTCCTGCCAGGTGTCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR-3UTR CAA 90 bp | CCCTACCAGGACACATGTTGGCCTTACCCCTCTGATTTGCCTACTCCTTACCTCACCTGGCAGGAGATCTaGCCTAGCTATCTGCTGGCA | + |
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Preference number: 3 (lower is better) Translates to: PYQDTCWPYPSDLPTPYLTWQEI*PSYLLA Trigger: TGCCAGCAGATAGCTAGGCAAGATCTCCTGCCAGGT...GAGGTAAGGAGTAGGCAAATCAGAGGGGTAAGGCCAACATGTGTCCTGGTAGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR-3UTR CAA 90 bp | GTTGACCTCAACGTCCAGATGACAGGCTGGGTGCCACCCCACACCCTAAAGGAGTGGTTTGGACCTGGATaGAAGGGAAAACTGAAGGTA | + |
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Preference number: 3 (lower is better) Translates to: VDLNVQMTGWVPPHTLKEWFGPG*KGKLKV Trigger: TACCTTCAGTTTTCCCTTCAATCCAGGTCCAAACCA...CTCCTTTAGGGTGTGGGGTGGCACCCAGCCTGTCATCTGGACGTTGAGGTCAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR-3UTR CAA 90 bp | CCCTACCAGGACACATGTTGGCCTTACCCCTCTGATTTGCCTACTCCTTACCTCTGTAGACAGGGGCACTaGCCAAGAGGAAATCACAAA | + |
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Preference number: 3 (lower is better) Translates to: PYQDTCWPYPSDLPTPYLCRQGH*PRGNHK Trigger: TTTGTGATTTCCTCTTGGCAAGTGCCCCTGTCTACA...GAGGTAAGGAGTAGGCAAATCAGAGGGGTAAGGCCAACATGTGTCCTGGTAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR TCA 72 bp | AGCCAGGGACTGAGTGGCCCTTGGGTTTTAGGGGCATaGAAACCTATGAGCATACTTAATAGGGAAGTGGAG | + |
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Preference number: 3 (lower is better) Translates to: SQGLSGPWVLGA*KPMSILNREVE Trigger: CTCCACTTCCCTATTAAGTATGCTCATAGGTTTTCATGCCCCTAAAACCCAAGGGCCACTCAGTCCCTGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR CCA 72 bp | CTACTCCTTACCTCTCTGTTGGGCCCAGAGTGCTGTTaGAGGCTCAAGAATGGGAATATTTTTGAAGCTGGG | + |
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Preference number: 3 (lower is better) Translates to: LLLTSLLGPECC*RLKNGNIFEAG Trigger: CCCAGCTTCAAAAATATTCCCATTCTTGAGCCTCCAACAGCACTCTGGGCCCAACAGAGAGGTAAGGAGTAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR TCA 72 bp | AAAGGCTACTGTTTTCCTGTCTTGAATGGAAGGGTATaGAAGAACCTGTGCTACCCAGAACCGTCCCAGCAC | + |
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Preference number: 3 (lower is better) Translates to: KGYCFPVLNGRV*KNLCYPEPSQH Trigger: GTGCTGGGACGGTTCTGGGTAGCACAGGTTCTTTCATACCCTTCCATTCAAGACAGGAAAACAGTAGCCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR GCA 72 bp | ATGGTGATTCATGGTTTCTGTGTAGACAGGGGCACTTaGCAAGAGGAAATCACAAAGCCAGCTAAGACCAGG | + |
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Preference number: 3 (lower is better) Translates to: MVIHGFCVDRGT*QEEITKPAKTR Trigger: CCTGGTCTTAGCTGGCTTTGTGATTTCCTCTTGGCAAGTGCCCCTGTCTACACAGAAACCATGAATCACCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR TCA 72 bp | TGTAACATGGGAGGAAAGGCTACTGTTTTCCTGTCTTaGATGGAAGGGTATGAAAGAACCTGTGCTACCCAG | + |
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Preference number: 3 (lower is better) Translates to: CNMGGKATVFLS*MEGYERTCATQ Trigger: CTGGGTAGCACAGGTTCTTTCATACCCTTCCATTCAAGACAGGAAAACAGTAGCCTTTCCTCCCATGTTACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS-3UTR CCA 90 bp | CAGGTATCAGGAAGACGGCTCAGCAGGCCCCAAGGAGCCTACCAACCTTCCATGCCAACTGCAAACAGATaGGTGGCCCAACCCGGGGAA | + |
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Preference number: 4 (lower is better) Translates to: QVSGRRLSRPQGAYQPSMPTANR*VAQPGE Trigger: TTCCCCGGGTTGGGCCACCCATCTGTTTGCAGTTGG...CATGGAAGGTTGGTAGGCTCCTTGGGGCCTGCTGAGCCGTCTTCCTGATACCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS-3UTR CCA 90 bp | CCCTACCAGGACACATGTTGGCCTTACCCCTCTGATTTGCCTACTCCTTACCTCTCTGCCACCACTAGTTaGCCCTGGGGTGCACAGGCC | + |
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Preference number: 4 (lower is better) Translates to: PYQDTCWPYPSDLPTPYLSATTS*PWGAQA Trigger: GGCCTGTGCACCCCAGGGCCAACTAGTGGTGGCAGA...GAGGTAAGGAGTAGGCAAATCAGAGGGGTAAGGCCAACATGTGTCCTGGTAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS-3UTR CCA 90 bp | CCTCCCCTTCCAGATCTCATCTGTAACATGGGAGGAAAGGCTACTGTTTTCCTGGCCCCCATCAGGCCCTaGACCTACCCAACAAGGGCC | + |
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Preference number: 4 (lower is better) Translates to: PPLPDLICNMGGKATVFLAPIRP*TYPTRA Trigger: GGCCCTTGTTGGGTAGGTCCAGGGCCTGATGGGGGC...CAGGAAAACAGTAGCCTTTCCTCCCATGTTACAGATGAGATCTGGAAGGGGAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR CAA 72 bp | CCCTACCAGGACACATGTTGGCCTTACCCCTCTGATTaGCCTACTCCTTACCTCTCTGTTGGGCCCAGAGTG | + |
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Preference number: 4 (lower is better) Translates to: PYQDTCWPYPSD*PTPYLSVGPRV Trigger: CACTCTGGGCCCAACAGAGAGGTAAGGAGTAGGCAAATCAGAGGGGTAAGGCCAACATGTGTCCTGGTAGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS-3UTR GCA 90 bp | CAGGTATCAGGAAGACGGCTCAGCAGGCCCCAAGGAGCCTACCAACCTTCCATGAACAAAGTCACTTGGTaGCTCTGCTCATCAGCCACA | + |
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Preference number: 4 (lower is better) Translates to: QVSGRRLSRPQGAYQPSMNKVTW*LCSSAT Trigger: TGTGGCTGATGAGCAGAGGCACCAAGTGACTTTGTT...CATGGAAGGTTGGTAGGCTCCTTGGGGCCTGCTGAGCCGTCTTCCTGATACCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS-3UTR CCA 90 bp | CCCTACCAGGACACATGTTGGCCTTACCCCTCTGATTTGCCTACTCCTTACCTCCTGCAAACAGATGGGTaGCCCAACCCGGGGAAACAA | + |
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Preference number: 4 (lower is better) Translates to: PYQDTCWPYPSDLPTPYLLQTDG*PNPGKQ Trigger: TTGTTTCCCCGGGTTGGGCCACCCATCTGTTTGCAG...GAGGTAAGGAGTAGGCAAATCAGAGGGGTAAGGCCAACATGTGTCCTGGTAGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS-3UTR CCA 90 bp | ACACACACACACACACACACACACACACCCCTCCCCTTCCAGATCTCATCTGTACACACACCTGCTGGGTaGCCAAAGTTATGCCCAGTC | + |
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Preference number: 4 (lower is better) Translates to: THTHTHTHTPLPFQISSVHTPAG*PKLCPV Trigger: GACTGGGCATAACTTTGGCCACCCAGCAGGTGTGTG...TACAGATGAGATCTGGAAGGGGAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS-3UTR CCA 90 bp | CACACACACACACACACACACACACACACACACACACACCCCTCCCCTTCCAGAGGAAACAAAGTCACTTaGTGCCTCTGCTCATCAGCC | + |
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Preference number: 4 (lower is better) Translates to: HTHTHTHTHTHTHPSPSRGNKVT*CLCSSA Trigger: GGCTGATGAGCAGAGGCACCAAGTGACTTTGTTTCC...TCTGGAAGGGGAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS-3UTR CCA 90 bp | CCTCCCCTTCCAGATCTCATCTGTAACATGGGAGGAAAGGCTACTGTTTTCCTGAGAGCACACACCTGCTaGGTGGCCAAAGTTATGCCC | + |
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Preference number: 4 (lower is better) Translates to: PPLPDLICNMGGKATVFLRAHTC*VAKVMP Trigger: GGGCATAACTTTGGCCACCCAGCAGGTGTGTGCTCT...CAGGAAAACAGTAGCCTTTCCTCCCATGTTACAGATGAGATCTGGAAGGGGAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS-3UTR GCA 90 bp | CCCTACCAGGACACATGTTGGCCTTACCCCTCTGATTTGCCTACTCCTTACCTCGTCACTTGGTGCCTCTaGTCATCAGCCACAATAATG | + |
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Preference number: 4 (lower is better) Translates to: PYQDTCWPYPSDLPTPYLVTWCL*SSATIM Trigger: CATTATTGTGGCTGATGAGCAGAGGCACCAAGTGAC...GAGGTAAGGAGTAGGCAAATCAGAGGGGTAAGGCCAACATGTGTCCTGGTAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS-3UTR CCA 90 bp | CCAGTAGAGGACCTGCCCTTGCTATGTGCCCTACCAGGACACATGTTGGCCTTAATCTCCCCCAGATACTaGTACAACTTGATGCAGTTG | + |
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Preference number: 4 (lower is better) Translates to: PVEDLPLLCALPGHMLALISPRY*YNLMQL Trigger: CAACTGCATCAAGTTGTACCAGTATCTGGGGGAGAT...TAAGGCCAACATGTGTCCTGGTAGGGCACATAGCAAGGGCAGGTCCTCTACTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| 3UTR CAA 72 bp | TTTCAAAACAGGGAGTGTCCAGTAGAGGACCTGCCCTaGCTATGTGCCCTACCAGGACACATGTTGGCCTTA | + |
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Preference number: 4 (lower is better) Translates to: FQNRECPVEDLP*LCALPGHMLAL Trigger: TAAGGCCAACATGTGTCCTGGTAGGGCACATAGCAAGGGCAGGTCCTCTACTGGACACTCCCTGTTTTGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS-3UTR CCA 90 bp | GTTTGGACCTGGATTGAAGGGAAAACTGAAGGTATCTTTCAAAACAGGGAGTGTCCTCCAGACCTAGCATaGAGGTTGGAGCAAGGGGCT | + |
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Preference number: 4 (lower is better) Translates to: VWTWIEGKTEGIFQNRECPPDLA*RLEQGA Trigger: AGCCCCTTGCTCCAACCTCCATGCTAGGTCTGGAGG...ACACTCCCTGTTTTGAAAGATACCTTCAGTTTTCCCTTCAATCCAGGTCCAAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS GCA 90 bp | TGGGGTGCACAGGCCATACCCAAGGGCCTCTTTAGTCCCTCCAACTaGAAACAGATGGGTGGCCCAACCCGGGGAAACAAAGTCACTTGG | + |
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Preference number: 5 (lower is better) Translates to: WGAQAIPKGLFSPSN*KQMGGPTRGNKVTW Trigger: CCAAGTGACTTTGTTTCCCCGGGTTGGGCCACCCATCTGTTTGCAGTTGGAGGGACTAAAGAGGCCCTTGGGTATGGCCTGTGCACCCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS CCA 90 bp | AACTTGATGCAGTTGTCCCCTGCATCTGCCACCACTAGTTGGCCCTaGGGTGCACAGGCCATACCCAAGGGCCTCTTTAGTCCCTCCAAC | + |
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Preference number: 5 (lower is better) Translates to: NLMQLSPASATTSWP*GAQAIPKGLFSPSN Trigger: GTTGGAGGGACTAAAGAGGCCCTTGGGTATGGCCTGTGCACCCCAGGGCCAACTAGTGGTGGCAGATGCAGGGGACAACTGCATCAAGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS CCA 90 bp | TGGTACAACTTGATGCAGTTGTCCCCTGCATCTGCCACCACTAGTTaGCCCTGGGGTGCACAGGCCATACCCAAGGGCCTCTTTAGTCCC | + |
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Preference number: 5 (lower is better) Translates to: WYNLMQLSPASATTS*PWGAQAIPKGLFSP Trigger: GGGACTAAAGAGGCCCTTGGGTATGGCCTGTGCACCCCAGGGCCAACTAGTGGTGGCAGATGCAGGGGACAACTGCATCAAGTTGTACCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS CCA 90 bp | TGGCCAAAGTTATGCCCAGTCAGGGTTCCTAGGGAGCCCAGAGGCTaGTGGGCACTGCCAAACAGCTGTACATCCCCAAACTCTTCACTC | + |
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Preference number: 5 (lower is better) Translates to: WPKLCPVRVPREPRG*WALPNSCTSPNSSL Trigger: GAGTGAAGAGTTTGGGGATGTACAGCTGTTTGGCAGTGCCCACCAGCCTCTGGGCTCCCTAGGAACCCTGACTGGGCATAACTTTGGCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS CCA 90 bp | AGGCCATACCCAAGGGCCTCTTTAGTCCCTCCAACTGCAAACAGATaGGTGGCCCAACCCGGGGAAACAAAGTCACTTGGTGCCTCTGCT | + |
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Preference number: 5 (lower is better) Translates to: RPYPRASLVPPTANR*VAQPGETKSLGASA Trigger: AGCAGAGGCACCAAGTGACTTTGTTTCCCCGGGTTGGGCCACCCATCTGTTTGCAGTTGGAGGGACTAAAGAGGCCCTTGGGTATGGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS CCA 90 bp | CCAAAGTTATGCCCAGTCAGGGTTCCTAGGGAGCCCAGAGGCTGGTaGGCACTGCCAAACAGCTGTACATCCCCAAACTCTTCACTCACA | + |
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Preference number: 5 (lower is better) Translates to: PKLCPVRVPREPRGW*ALPNSCTSPNSSLT Trigger: TGTGAGTGAAGAGTTTGGGGATGTACAGCTGTTTGGCAGTGCCCACCAGCCTCTGGGCTCCCTAGGAACCCTGACTGGGCATAACTTTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS GCA 90 bp | CAGATGGGTGGCCCAACCCGGGGAAACAAAGTCACTTGGTGCCTCTaGTCATCAGCCACAATAATGCTACCCTCTGCATCAGAGCACACA | + |
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Preference number: 5 (lower is better) Translates to: QMGGPTRGNKVTWCL*SSATIMLPSASEHT Trigger: TGTGTGCTCTGATGCAGAGGGTAGCATTATTGTGGCTGATGAGCAGAGGCACCAAGTGACTTTGTTTCCCCGGGTTGGGCCACCCATCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS-3UTR CAA 90 bp | GTTGACCTCAACGTCCAGATGACAGGCTGGGTGCCACCCCACACCCTAAAGGAGAGATACTGGTACAACTaGATGCAGTTGTCCCCTGCA | + |
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Preference number: 5 (lower is better) Translates to: VDLNVQMTGWVPPHTLKERYWYN*MQLSPA Trigger: TGCAGGGGACAACTGCATCAAGTTGTACCAGTATCT...CTCCTTTAGGGTGTGGGGTGGCACCCAGCCTGTCATCTGGACGTTGAGGTCAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS GCA 90 bp | TGCAAACAGATGGGTGGCCCAACCCGGGGAAACAAAGTCACTTGGTaGCTCTGCTCATCAGCCACAATAATGCTACCCTCTGCATCAGAG | + |
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Preference number: 5 (lower is better) Translates to: CKQMGGPTRGNKVTW*LCSSATIMLPSASE Trigger: CTCTGATGCAGAGGGTAGCATTATTGTGGCTGATGAGCAGAGGCACCAAGTGACTTTGTTTCCCCGGGTTGGGCCACCCATCTGTTTGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS-3UTR CAA 90 bp | GCTGGCAGACAGCCTCAGCACCCAGGATCTATAGCTTCAAGTGTTGCCTCAAAGTACAACTTGATGCAGTaGTCCCCTGCATCTGCCACC | + |
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Preference number: 5 (lower is better) Translates to: AGRQPQHPGSIASSVASKYNLMQ*SPASAT Trigger: GGTGGCAGATGCAGGGGACAACTGCATCAAGTTGTA...CTTTGAGGCAACACTTGAAGCTATAGATCCTGGGTGCTGAGGCTGTCTGCCAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS CCA 90 bp | AACTGCAAACAGATGGGTGGCCCAACCCGGGGAAACAAAGTCACTTaGTGCCTCTGCTCATCAGCCACAATAATGCTACCCTCTGCATCA | + |
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Preference number: 5 (lower is better) Translates to: NCKQMGGPTRGNKVT*CLCSSATIMLPSAS Trigger: TGATGCAGAGGGTAGCATTATTGTGGCTGATGAGCAGAGGCACCAAGTGACTTTGTTTCCCCGGGTTGGGCCACCCATCTGTTTGCAGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS CCA 72 bp | CTGGACCTACCCAACAAGGGCCCTCCAGACCTAGCATaGAGGTTGGAGCAAGGGGCTCCCAGGTTGGTCCTA | + |
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Preference number: 6 (lower is better) Translates to: LDLPNKGPPDLA*RLEQGAPRLVL Trigger: TAGGACCAACCTGGGAGCCCCTTGCTCCAACCTCCATGCTAGGTCTGGAGGGCCCTTGTTGGGTAGGTCCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS CCA 72 bp | CAGTTGTCCCCTGCATCTGCCACCACTAGTTGGCCCTaGGGTGCACAGGCCATACCCAAGGGCCTCTTTAGT | + |
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Preference number: 6 (lower is better) Translates to: QLSPASATTSWP*GAQAIPKGLFS Trigger: ACTAAAGAGGCCCTTGGGTATGGCCTGTGCACCCCAGGGCCAACTAGTGGTGGCAGATGCAGGGGACAACTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS GCA 72 bp | CAGGCCATACCCAAGGGCCTCTTTAGTCCCTCCAACTaGAAACAGATGGGTGGCCCAACCCGGGGAAACAAA | + |
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Preference number: 6 (lower is better) Translates to: QAIPKGLFSPSN*KQMGGPTRGNK Trigger: TTTGTTTCCCCGGGTTGGGCCACCCATCTGTTTGCAGTTGGAGGGACTAAAGAGGCCCTTGGGTATGGCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS CCA 72 bp | CAGATGGGTGGCCCAACCCGGGGAAACAAAGTCACTTaGTGCCTCTGCTCATCAGCCACAATAATGCTACCC | + |
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Preference number: 6 (lower is better) Translates to: QMGGPTRGNKVT*CLCSSATIMLP Trigger: GGGTAGCATTATTGTGGCTGATGAGCAGAGGCACCAAGTGACTTTGTTTCCCCGGGTTGGGCCACCCATCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS CCA 72 bp | CCAAGGGCCTCTTTAGTCCCTCCAACTGCAAACAGATaGGTGGCCCAACCCGGGGAAACAAAGTCACTTGGT | + |
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Preference number: 6 (lower is better) Translates to: PRASLVPPTANR*VAQPGETKSLG Trigger: ACCAAGTGACTTTGTTTCCCCGGGTTGGGCCACCCATCTGTTTGCAGTTGGAGGGACTAAAGAGGCCCTTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS GCA 72 bp | CACAATAATGCTACCCTCTGCATCAGAGCACACACCTaGTGGGTGGCCAAAGTTATGCCCAGTCAGGGTTCC | + |
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Preference number: 6 (lower is better) Translates to: HNNATLCIRAHT*WVAKVMPSQGS Trigger: GGAACCCTGACTGGGCATAACTTTGGCCACCCAGCAGGTGTGTGCTCTGATGCAGAGGGTAGCATTATTGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS GCA 72 bp | GGCCCAACCCGGGGAAACAAAGTCACTTGGTGCCTCTaGTCATCAGCCACAATAATGCTACCCTCTGCATCA | + |
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Preference number: 6 (lower is better) Translates to: GPTRGNKVTWCL*SSATIMLPSAS Trigger: TGATGCAGAGGGTAGCATTATTGTGGCTGATGAGCAGAGGCACCAAGTGACTTTGTTTCCCCGGGTTGGGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS GCA 72 bp | ATGGGTGGCCCAACCCGGGGAAACAAAGTCACTTGGTaGCTCTGCTCATCAGCCACAATAATGCTACCCTCT | + |
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Preference number: 6 (lower is better) Translates to: MGGPTRGNKVTW*LCSSATIMLPS Trigger: AGAGGGTAGCATTATTGTGGCTGATGAGCAGAGGCACCAAGTGACTTTGTTTCCCCGGGTTGGGCCACCCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS CAA 72 bp | ACAGATGGGTGGCCCAACCCGGGGAAACAAAGTCACTaGGTGCCTCTGCTCATCAGCCACAATAATGCTACC | + |
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Preference number: 6 (lower is better) Translates to: TDGWPNPGKQSH*VPLLISHNNAT Trigger: GGTAGCATTATTGTGGCTGATGAGCAGAGGCACCAAGTGACTTTGTTTCCCCGGGTTGGGCCACCCATCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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| CDS CAA 90 bp | CAACTGCAAACAGATGGGTGGCCCAACCCGGGGAAACAAAGTCACTaGGTGCCTCTGCTCATCAGCCACAATAATGCTACCCTCTGCATC | + |
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Preference number: 6 (lower is better) Translates to: QLQTDGWPNPGKQSH*VPLLISHNNATLCI Trigger: GATGCAGAGGGTAGCATTATTGTGGCTGATGAGCAGAGGCACCAAGTGACTTTGTTTCCCCGGGTTGGGCCACCCATCTGTTTGCAGTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085027.4 |
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