RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NHLRC2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025078

Ensembl transcript IDs: ENSMUST00000071423.7, ENSMUST00000236979.2

Found 212 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ATGCCGTGGGAGCATTTTACTGAAGCCTGGCGGCAAGCCCAGGCTTaGTCCAGCAGCCCAGCTCTGCAGGGCAAGACACTGCTAGAGTCT +
Preference number: 1 (lower is better)
Translates to: MPWEHFTEAWRQAQA*SSSPALQGKTLLES
Trigger: AGACTCTAGCAGTGTCTTGCCCTGCAGAGCTGGGCTGCTGGACCAAGCCTGGGCTTGCCGCCAGGCTTCAGTAAAATGCTCCCACGGCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR GCA 90 bp CTACAAGGCTCTCAGAGAGGACAGGAGACGCTGCAGCTCCAGAAGTaGTGTGACCAAGGTTTCCTCCTGGCAGACACTGTGTCAGTCCTG +
Preference number: 1 (lower is better)
Translates to: LQGSQRGQETLQLQK*CDQGFLLADTVSVL
Trigger: CAGGACTGACACAGTGTCTGCCAGGAGGAAACCTTGGTCACAGCACTTCTGGAGCTGCAGCGTCTCCTGTCCTCTCTGAGAGCCTTGTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR TCA 90 bp AGCTCCTCAGCAAAGGCTCGACAGGAATACAGCTGTTTCTGTAGCTaGGGGCGGAGGTCACGGGCTGAGTTGGGGCTCTGGCTTAGTTTT +
Preference number: 1 (lower is better)
Translates to: SSSAKARQEYSCFCS*GRRSRAELGLWLSF
Trigger: AAAACTAAGCCAGAGCCCCAACTCAGCCCGTGACCTCCGCCCTCAGCTACAGAAACAGCTGTATTCCTGTCGAGCCTTTGCTGAGGAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR GCA 90 bp ACGTCTCCAGGCCTGCACCAGCCATGCTCGTTATGGTGGACTGGCTaGTGGGACAGTCCTGTTGAGCTAACTGGGATGTCTACACATACT +
Preference number: 1 (lower is better)
Translates to: TSPGLHQPCSLWWTG*WDSPVELTGMSTHT
Trigger: AGTATGTGTAGACATCCCAGTTAGCTCAACAGGACTGTCCCAGCAGCCAGTCCACCATAACGAGCATGGCTGGTGCAGGCCTGGAGACGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR CCA 90 bp TCTCCAGGCCTGCACCAGCCATGCTCGTTATGGTGGACTGGCTGCTaGGACAGTCCTGTTGAGCTAACTGGGATGTCTACACATACTCCT +
Preference number: 1 (lower is better)
Translates to: SPGLHQPCSLWWTGC*DSPVELTGMSTHTP
Trigger: AGGAGTATGTGTAGACATCCCAGTTAGCTCAACAGGACTGTCCCAGCAGCCAGTCCACCATAACGAGCATGGCTGGTGCAGGCCTGGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR TCA 90 bp GGACATCTTGTCTCACACTGCCACGCTGATTTCAGGAACAACTCCTaGGTCACCAGGGAGCCTGCACAGCAGACCATTAAGGCTGCAGGA +
Preference number: 1 (lower is better)
Translates to: GHLVSHCHADFRNNS*VTREPAQQTIKAAG
Trigger: TCCTGCAGCCTTAATGGTCTGCTGTGCAGGCTCCCTGGTGACTCAGGAGTTGTTCCTGAAATCAGCGTGGCAGTGTGAGACAAGATGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR GCA 90 bp TTGTCTCAGGACAACTACAAGGCTCTCAGAGAGGACAGGAGACGCTaGAGCTCCAGAAGTGCTGTGACCAAGGTTTCCTCCTGGCAGACA +
Preference number: 1 (lower is better)
Translates to: LSQDNYKALREDRRR*SSRSAVTKVSSWQT
Trigger: TGTCTGCCAGGAGGAAACCTTGGTCACAGCACTTCTGGAGCTGCAGCGTCTCCTGTCCTCTCTGAGAGCCTTGTAGTTGTCCTGAGACAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR TCA 90 bp CACACAGGAGTGACGTGCAAGGGGAGCAAAGGACACACCACACAATaGGTAACTACACCTAGACGCACATTCCACAAGCGTCTAGGGTTT +
Preference number: 1 (lower is better)
Translates to: HTGVTCKGSKGHTTQ*VTTPRRTFHKRLGF
Trigger: AAACCCTAGACGCTTGTGGAATGTGCGTCTAGGTGTAGTTACTCATTGTGTGGTGTGTCCTTTGCTCCCCTTGCACGTCACTCCTGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR CCA 90 bp TCTTTGCCAAGCCAGAGGCAAAGGCAGAAGCTGAAGACTTTTCCCTaGATGGAGAAAGACAGTCAGTTCCGCGTATGTGGAGAAACCATG +
Preference number: 1 (lower is better)
Translates to: SLPSQRQRQKLKTFP*MEKDSQFRVCGETM
Trigger: CATGGTTTCTCCACATACGCGGAACTGACTGTCTTTCTCCATCCAGGGAAAAGTCTTCAGCTTCTGCCTTTGCCTCTGGCTTGGCAAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR TCA 90 bp AAAAGCAATCTTGGTGATTATCACGCAGGTCTGCCTCAAGGTATGTaGCTCTGTCACACTGTCATTTCTGACCCATGTAGTGCGCTGCTC +
Preference number: 1 (lower is better)
Translates to: KSNLGDYHAGLPQGM*LCHTVISDPCSALL
Trigger: GAGCAGCGCACTACATGGGTCAGAAATGACAGTGTGACAGAGTCACATACCTTGAGGCAGACCTGCGTGATAATCACCAAGATTGCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR TCA 90 bp TGTTCTGGCTTTAAGCAGACCTTAGACACTAAACAGCAGGTATCCTaGCACAAAGGCGCACAGCTTAGGCCCATCTCAAGTTACTGGAAA +
Preference number: 1 (lower is better)
Translates to: CSGFKQTLDTKQQVS*HKGAQLRPISSYWK
Trigger: TTTCCAGTAACTTGAGATGGGCCTAAGCTGTGCGCCTTTGTGTCAGGATACCTGCTGTTTAGTGTCTAAGGTCTGCTTAAAGCCAGAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR CCA 90 bp GCACAGCTTAGGCCCATCTCAAGTTACTGGAAATTTACACACGAATaGATAACCACTACTGATAAAGGCAGGTTATTTAAACTATCTGGC +
Preference number: 1 (lower is better)
Translates to: AQLRPISSYWKFTHE*ITTTDKGRLFKLSG
Trigger: GCCAGATAGTTTAAATAACCTGCCTTTATCAGTAGTGGTTATCCATTCGTGTGTAAATTTCCAGTAACTTGAGATGGGCCTAAGCTGTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR CCA 90 bp CTAACTTTAACGACCATTCTGTCTATTACCCTAACGCAAAGAAACTaGAAAAAGGAAATTCTATTAAGCCAGGTTAAAACAGTGACTCAG +
Preference number: 1 (lower is better)
Translates to: LTLTTILSITLTQRN*KKEILLSQVKTVTQ
Trigger: CTGAGTCACTGTTTTAACCTGGCTTAATAGAATTTCCTTTTTCCAGTTTCTTTGCGTTAGGGTAATAGACAGAATGGTCGTTAAAGTTAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR CCA 90 bp GCTGAGGGCGGAGGTCACGGGCTGAGTTGGGGCTCTGGCTTAGTTTTTGAGGGTCCACCAGCTCCAGGCTaGAGCTGCAGAGCCGCTGCC +
Preference number: 2 (lower is better)
Translates to: AEGGGHGLSWGSGLVFEGPPAPG*SCRAAA
Trigger: GGCAGCGGCTCTGCAGCTCCAGCCTGGAGCTGGTGG...ACCCTCAAAAACTAAGCCAGAGCCCCAACTCAGCCCGTGACCTCCGCCCTCAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR CCA 90 bp GCTGAGGGCGGAGGTCACGGGCTGAGTTGGGGCTCTGGCTTAGTTTTTGAGGGTCGGCAAGCCCAGGCTTaGTCCAGCAGCCCAGCTCTG +
Preference number: 2 (lower is better)
Translates to: AEGGGHGLSWGSGLVFEGRQAQA*SSSPAL
Trigger: CAGAGCTGGGCTGCTGGACCAAGCCTGGGCTTGCCG...ACCCTCAAAAACTAAGCCAGAGCCCCAACTCAGCCCGTGACCTCCGCCCTCAGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR TCA 90 bp GCTGAGGGCGGAGGTCACGGGCTGAGTTGGGGCTCTGGCTTAGTTTTTGAGGGTGCTCCAGAAGTGCTGTaGCCAAGGTTTCCTCCTGGC +
Preference number: 2 (lower is better)
Translates to: AEGGGHGLSWGSGLVFEGAPEVL*PRFPPG
Trigger: GCCAGGAGGAAACCTTGGTCACAGCACTTCTGGAGC...ACCCTCAAAAACTAAGCCAGAGCCCCAACTCAGCCCGTGACCTCCGCCCTCAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR GCA 90 bp ATCACTGCAACACGTTCCCCACTTGAGTCCCTGTGGAAGCCCAGCTCCTCAGCATGCTGTGACCAGCAGTaGAGAGAGGCAGGTGGGTGG +
Preference number: 2 (lower is better)
Translates to: ITATRSPLESLWKPSSSACCDQQ*REAGGW
Trigger: CCACCCACCTGCCTCTCTGCACTGCTGGTCACAGCA...TGCTGAGGAGCTGGGCTTCCACAGGGACTCAAGTGGGGAACGTGTTGCAGTGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR CCA 90 bp TCCAGCAGCCCAGCTCTGCAGGGCAAGACACTGCTAGAGTCTATACTCCTGCCAAGGTCAGCATGCCTCTaGGAGCCAGGCATTGCCTGC +
Preference number: 2 (lower is better)
Translates to: SSSPALQGKTLLESILLPRSACL*EPGIAC
Trigger: GCAGGCAATGCCTGGCTCCCAGAGGCATGCTGACCT...TGGCAGGAGTATAGACTCTAGCAGTGTCTTGCCCTGCAGAGCTGGGCTGCTGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR TCA 90 bp ATCACTGCAACACGTTCCCCACTTGAGTCCCTGTGGAAGCCCAGCTCCTCAGCAACAGGCACACAGGAGTaGCGTGCAAGGGGAGCAAAG +
Preference number: 2 (lower is better)
Translates to: ITATRSPLESLWKPSSSATGTQE*RARGAK
Trigger: CTTTGCTCCCCTTGCACGTCACTCCTGTGTGCCTGT...TGCTGAGGAGCTGGGCTTCCACAGGGACTCAAGTGGGGAACGTGTTGCAGTGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR GCA 90 bp GCTGAGGGCGGAGGTCACGGGCTGAGTTGGGGCTCTGGCTTAGTTTTTGAGGGTGGCTGTTGTGAGGATTaGGTGTGGTCAGCACACAGA +
Preference number: 2 (lower is better)
Translates to: AEGGGHGLSWGSGLVFEGGCCED*VWSAHR
Trigger: TCTGTGTGCTGACCACACGCAATCCTCACAACAGCC...ACCCTCAAAAACTAAGCCAGAGCCCCAACTCAGCCCGTGACCTCCGCCCTCAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR CCA 90 bp GCTGTTGTGAGGATTGCGTGTGGTCAGCACACAGAAGGGAAACTCCCAGCAGGGTCCCTAAGCGACGAATaGCAGGATGGACAGGGCCTG +
Preference number: 2 (lower is better)
Translates to: AVVRIACGQHTEGKLPAGSLSDE*QDGQGL
Trigger: CAGGCCCTGTCCATCCTGCCATTCGTCGCTTAGGGA...CCCTGCTGGGAGTTTCCCTTCTGTGTGCTGACCACACGCAATCCTCACAACAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR CCA 90 bp CCAAGGCAGACAGAGTTGTCTCAGGACAACTACAAGGCTCTCAGAGAGGACAGGCGACGAATGGCAGGATaGACAGGGCCTGTGCTGAGG +
Preference number: 2 (lower is better)
Translates to: PRQTELSQDNYKALREDRRRMAG*TGPVLR
Trigger: CCTCAGCACAGGCCCTGTCCATCCTGCCATTCGTCG...CCTGTCCTCTCTGAGAGCCTTGTAGTTGTCCTGAGACAACTCTGTCTGCCTTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR GCA 90 bp AGCTTCGTACCCAACATGCCGAAGCAGCTTCCTTCTCTGGAACATTCACACCTACAAATCAACGAGGGCTaGGGCGCTCTGAGGCCCTCC +
Preference number: 2 (lower is better)
Translates to: SFVPNMPKQLPSLEHSHLQINEG*GALRPS
Trigger: GGAGGGCCTCAGAGCGCCGCAGCCCTCGTTGATTTG...TAGGTGTGAATGTTCCAGAGAAGGAAGCTGCTTCGGCATGTTGGGTACGAAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR CCA 90 bp GCTGAGGGCGGAGGTCACGGGCTGAGTTGGGGCTCTGGCTTAGTTTTTGAGGGTCTGAAGACTTTTCCCTaGATGGAGAAAGACAGTCAG +
Preference number: 2 (lower is better)
Translates to: AEGGGHGLSWGSGLVFEGLKTFP*MEKDSQ
Trigger: CTGACTGTCTTTCTCCATCCAGGGAAAAGTCTTCAG...ACCCTCAAAAACTAAGCCAGAGCCCCAACTCAGCCCGTGACCTCCGCCCTCAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR GCA 90 bp CAACTACAAGGCTCTCAGAGAGGACAGGAGACGCTGCAGCTCCAGAAGTGCTGTTCCCCACTAACATTCTaGTGTGACCAGCAGTGCAGA +
Preference number: 2 (lower is better)
Translates to: QLQGSQRGQETLQLQKCCSPLTF*CDQQCR
Trigger: TCTGCACTGCTGGTCACAGCAGAATGTTAGTGGGGA...ACAGCACTTCTGGAGCTGCAGCGTCTCCTGTCCTCTCTGAGAGCCTTGTAGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR GCA 90 bp GCTGTTGTGAGGATTGCGTGTGGTCAGCACACAGAAGGGAAACTCCCAGCAGGGTTACTCCCTGCTAAATaGCGTGGGAGCATTTTACTG +
Preference number: 2 (lower is better)
Translates to: AVVRIACGQHTEGKLPAGLLPAK*RGSILL
Trigger: CAGTAAAATGCTCCCACGGCATTTAGCAGGGAGTAA...CCCTGCTGGGAGTTTCCCTTCTGTGTGCTGACCACACGCAATCCTCACAACAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR CCA 90 bp ATCACTGCAACACGTTCCCCACTTGAGTCCCTGTGGAAGCCCAGCTCCTCAGCAAGACTTTTCCCTGGATaGAGAAAGACAGTCAGTTCC +
Preference number: 2 (lower is better)
Translates to: ITATRSPLESLWKPSSSARLFPG*RKTVSS
Trigger: GGAACTGACTGTCTTTCTCCATCCAGGGAAAAGTCT...TGCTGAGGAGCTGGGCTTCCACAGGGACTCAAGTGGGGAACGTGTTGCAGTGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR TCA 90 bp AGCTTCGTACCCAACATGCCGAAGCAGCTTCCTTCTCTGGAACATTCACACCTAACTAACATTCTGCTGTaGCCAGCAGTGCAGAGAGGC +
Preference number: 2 (lower is better)
Translates to: SFVPNMPKQLPSLEHSHLTNILL*PAVQRG
Trigger: GCCTCTCTGCACTGCTGGTCACAGCAGAATGTTAGT...TAGGTGTGAATGTTCCAGAGAAGGAAGCTGCTTCGGCATGTTGGGTACGAAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR GCA 90 bp AACCTCTCCAGGATCCCTTCCAGTGCTGTTTCTTACGGGGTTAAAGAAAACACAACACCCAGGTCAGCATaGCTCTGGGAGCCAGGCATT +
Preference number: 2 (lower is better)
Translates to: NLSRIPSSAVSYGVKENTTPRSA*LWEPGI
Trigger: AATGCCTGGCTCCCAGAGGCATGCTGACCTGGGTGT...TGTGTTTTCTTTAACCCCGTAAGAAACAGCACTGGAAGGGATCCTGGAGAGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR CCA 90 bp GTCCAGCAGCCCAGCTCTGCAGGGCAAGACACTGCTAGAGTCTATACTCCTGCCCCCATCTCAAGTTACTaGAAATTTACACACGAATGG +
Preference number: 2 (lower is better)
Translates to: VQQPSSAGQDTARVYTPAPISSY*KFTHEW
Trigger: CCATTCGTGTGTAAATTTCCAGTAACTTGAGATGGG...GGCAGGAGTATAGACTCTAGCAGTGTCTTGCCCTGCAGAGCTGGGCTGCTGGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR GCA 90 bp CCTGTTTTAGAGAGTGAAACTGTTTATGTCCTCAAACAGGAAATGACTGAACCAGCTCCAGGCTGGAGCTaGAGAGCCGCTGCCTTGGCT +
Preference number: 2 (lower is better)
Translates to: PVLESETVYVLKQEMTEPAPGWS*RAAALA
Trigger: AGCCAAGGCAGCGGCTCTGCAGCTCCAGCCTGGAGC...TGGTTCAGTCATTTCCTGTTTGAGGACATAAACAGTTTCACTCTCTAAAACAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR GCA 90 bp AGCTTCGTACCCAACATGCCGAAGCAGCTTCCTTCTCTGGAACATTCACACCTAAACAACTCTGATCTTTaGCAAGCCAGAGGCAAAGGC +
Preference number: 2 (lower is better)
Translates to: SFVPNMPKQLPSLEHSHLNNSDL*QARGKG
Trigger: GCCTTTGCCTCTGGCTTGGCAAAGATCAGAGTTGTT...TAGGTGTGAATGTTCCAGAGAAGGAAGCTGCTTCGGCATGTTGGGTACGAAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR GCA 90 bp GCTGTTGTGAGGATTGCGTGTGGTCAGCACACAGAAGGGAAACTCCCAGCAGGGGGTGGAGAAAGATTTTaGTTTAGAAACTGGAGTTGT +
Preference number: 2 (lower is better)
Translates to: AVVRIACGQHTEGKLPAGGGERF*FRNWSC
Trigger: ACAACTCCAGTTTCTAAAGCAAAATCTTTCTCCACC...CCCTGCTGGGAGTTTCCCTTCTGTGTGCTGACCACACGCAATCCTCACAACAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR CCA 90 bp TCCAGCAGCCCAGCTCTGCAGGGCAAGACACTGCTAGAGTCTATACTCCTGCCATATGTGGAGAAACCATaGTTACACATGTTCATTAAG +
Preference number: 2 (lower is better)
Translates to: SSSPALQGKTLLESILLPYVEKP*LHMFIK
Trigger: CTTAATGAACATGTGTAACCATGGTTTCTCCACATA...TGGCAGGAGTATAGACTCTAGCAGTGTCTTGCCCTGCAGAGCTGGGCTGCTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR TCA 90 bp AGACAGCTGTCCACTTCCTCTGTGTACACTCTTAGTGCTGATGTGACTGTTCAAAGTGCCGTGGTAAAATaGTGGTCAATGACTTGGCTA +
Preference number: 2 (lower is better)
Translates to: RQLSTSSVYTLSADVTVQSAVVK*WSMTWL
Trigger: TAGCCAAGTCATTGACCATCATTTTACCACGGCACT...TTGAACAGTCACATCAGCACTAAGAGTGTACACAGAGGAAGTGGACAGCTGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR CAA 90 bp TTAGTATCTTTGAGAAGATTAGATTACTCTCTAAAGTACTGGCCATaGAGTATTCTCAGAGGTAGAATTTCAGTGAGACAGCACGGGCTT +
Preference number: 2 (lower is better)
Translates to: LVSLRRLDYSLKYWP*SILRGRISVRQHGL
Trigger: AAGCCCGTGCTGTCTCACTGAAATTCTACCTCTGAGAATACTCAATGGCCAGTACTTTAGAGAGTAATCTAATCTTCTCAAAGATACTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR CCA 72 bp CCTAGCAGAGCCTGCAGGCAGGGCTGTGTCCTATTCTaGGCCAGCCTGTGTGCTCATAGCGGCCACCCGAGA +
Preference number: 3 (lower is better)
Translates to: PSRACRQGCVLF*ASLCAHSGHPR
Trigger: TCTCGGGTGGCCGCTATGAGCACACAGGCTGGCCCAGAATAGGACACAGCCCTGCCTGCAGGCTCTGCTAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR GCA 72 bp GCACCACGCCATGGCGAAAGCTATCCTAGCAGAGCCTaGAGGCAGGGCTGTGTCCTATTCTGGGCCAGCCTG +
Preference number: 3 (lower is better)
Translates to: APRHGESYPSRA*RQGCVLFWASL
Trigger: CAGGCTGGCCCAGAATAGGACACAGCCCTGCCTGCAGGCTCTGCTAGGATAGCTTTCGCCATGGCGTGGTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR CCA 72 bp GAGCATTTTACTGAAGCCTGGCGGCAAGCCCAGGCTTaGTCCAGCAGCCCAGCTCTGCAGGGCAAGACACTG +
Preference number: 3 (lower is better)
Translates to: EHFTEAWRQAQA*SSSPALQGKTL
Trigger: CAGTGTCTTGCCCTGCAGAGCTGGGCTGCTGGACCAAGCCTGGGCTTGCCGCCAGGCTTCAGTAAAATGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR TCA 72 bp GCAAAGGCTCGACAGGAATACAGCTGTTTCTGTAGCTaGGGGCGGAGGTCACGGGCTGAGTTGGGGCTCTGG +
Preference number: 3 (lower is better)
Translates to: AKARQEYSCFCS*GRRSRAELGLW
Trigger: CCAGAGCCCCAACTCAGCCCGTGACCTCCGCCCTCAGCTACAGAAACAGCTGTATTCCTGTCGAGCCTTTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR GCA 72 bp AGGGCGGCCACAGGTGGAAGTGTACTGGAAAGTCCTTaGGGTTCTTTCCTTGGGTCGGGAGGCTGTCGAGAG +
Preference number: 3 (lower is better)
Translates to: RAATGGSVLESP*GSFLGSGGCRE
Trigger: CTCTCGACAGCCTCCCGACCCAAGGAAAGAACCGCAAGGACTTTCCAGTACACTTCCACCTGTGGCCGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR TCA 72 bp AGTACTTTGAAGACTGCAGAGGGCACCGCCCCAGGGTaGGAGCACCCACCAGGGCACGCAGGTTATAATCTG +
Preference number: 3 (lower is better)
Translates to: STLKTAEGTAPG*EHPPGHAGYNL
Trigger: CAGATTATAACCTGCGTGCCCTGGTGGGTGCTCTCACCCTGGGGCGGTGCCCTCTGCAGTCTTCAAAGTACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR GCA 72 bp GGCCTGCACCAGCCATGCTCGTTATGGTGGACTGGCTaGTGGGACAGTCCTGTTGAGCTAACTGGGATGTCT +
Preference number: 3 (lower is better)
Translates to: GLHQPCSLWWTG*WDSPVELTGMS
Trigger: AGACATCCCAGTTAGCTCAACAGGACTGTCCCAGCAGCCAGTCCACCATAACGAGCATGGCTGGTGCAGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR CCA 72 bp CAGACGCTGCACTGGGATGCCCCTAAAAACCACCACTaGCACACGCAGGACATCTTGTCTCACACTGCCACG +
Preference number: 3 (lower is better)
Translates to: QTLHWDAPKNHH*HTQDILSHTAT
Trigger: CGTGGCAGTGTGAGACAAGATGTCCTGCGTGTGCCAGTGGTGGTTTTTAGGGGCATCCCAGTGCAGCGTCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR CAA 90 bp GCTGAGGGCGGAGGTCACGGGCTGAGTTGGGGCTCTGGCTTAGTTTTTGAGGGTCCAAGGCAGACAGAGTaGTCTCAGGACAACTACAAG +
Preference number: 3 (lower is better)
Translates to: AEGGGHGLSWGSGLVFEGPRQTE*SQDNYK
Trigger: CTTGTAGTTGTCCTGAGACAACTCTGTCTGCCTTGG...ACCCTCAAAAACTAAGCCAGAGCCCCAACTCAGCCCGTGACCTCCGCCCTCAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR TCA 72 bp AGGCTGTCGAGAGCAGTGTCCACAGGCACACAGGAGTaGCGTGCAAGGGGAGCAAAGGACACACCACACAAT +
Preference number: 3 (lower is better)
Translates to: RLSRAVSTGTQE*RARGAKDTPHN
Trigger: ATTGTGTGGTGTGTCCTTTGCTCCCCTTGCACGTCACTCCTGTGTGCCTGTGGACACTGCTCTCGACAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR GCA 72 bp GGAAATAAACGAGGAATCCAACAAATCAACGAGGGCTaGGGCGCTCTGAGGCCCTCCACAGACCACCAGCTC +
Preference number: 3 (lower is better)
Translates to: GNKRGIQQINEG*GALRPSTDHQL
Trigger: GAGCTGGTGGTCTGTGGAGGGCCTCAGAGCGCCGCAGCCCTCGTTGATTTGTTGGATTCCTCGTTTATTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR GCA 72 bp TCTCAGAGAGGACAGGAGACGCTGCAGCTCCAGAAGTaGTGTGACCAAGGTTTCCTCCTGGCAGACACTGTG +
Preference number: 3 (lower is better)
Translates to: SQRGQETLQLQK*CDQGFLLADTV
Trigger: CACAGTGTCTGCCAGGAGGAAACCTTGGTCACAGCACTTCTGGAGCTGCAGCGTCTCCTGTCCTCTCTGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR GCA 72 bp GCACTGGACGCTACCCCAGGAGCTTCGTACCCAACATaGCGAAGCAGCTTCCTTCTCTGGAACATTCACACC +
Preference number: 3 (lower is better)
Translates to: ALDATPGASYPT*RSSFLLWNIHT
Trigger: GGTGTGAATGTTCCAGAGAAGGAAGCTGCTTCGGCATGTTGGGTACGAAGCTCCTGGGGTAGCGTCCAGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR CCA 72 bp TGGAAGTGTACTGGAAAGTCCTTGCGGTTCTTTCCTTaGGTCGGGAGGCTGTCGAGAGCAGTGTCCACAGGC +
Preference number: 3 (lower is better)
Translates to: WKCTGKSLRFFP*VGRLSRAVSTG
Trigger: GCCTGTGGACACTGCTCTCGACAGCCTCCCGACCCAAGGAAAGAACCGCAAGGACTTTCCAGTACACTTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR GCA 72 bp GACAACTACAAGGCTCTCAGAGAGGACAGGAGACGCTaGAGCTCCAGAAGTGCTGTGACCAAGGTTTCCTCC +
Preference number: 3 (lower is better)
Translates to: DNYKALREDRRR*SSRSAVTKVSS
Trigger: GGAGGAAACCTTGGTCACAGCACTTCTGGAGCTGCAGCGTCTCCTGTCCTCTCTGAGAGCCTTGTAGTTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR CCA 72 bp CTGCACCAGCCATGCTCGTTATGGTGGACTGGCTGCTaGGACAGTCCTGTTGAGCTAACTGGGATGTCTACA +
Preference number: 3 (lower is better)
Translates to: LHQPCSLWWTGC*DSPVELTGMST
Trigger: TGTAGACATCCCAGTTAGCTCAACAGGACTGTCCCAGCAGCCAGTCCACCATAACGAGCATGGCTGGTGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR GCA 72 bp GCTTCACGACCACACTACTTCACAATGGACAGACGCTaGACTGGGATGCCCCTAAAAACCACCACTGGCACA +
Preference number: 3 (lower is better)
Translates to: ASRPHYFTMDRR*TGMPLKTTTGT
Trigger: TGTGCCAGTGGTGGTTTTTAGGGGCATCCCAGTGCAGCGTCTGTCCATTGTGAAGTAGTGTGGTCGTGAAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR CAA 90 bp CAACTACAAGGCTCTCAGAGAGGACAGGAGACGCTGCAGCTCCAGAAGTGCTGTCCTTTCACGTTCGCCTaGCTCCTGAGAAACAGCATT +
Preference number: 3 (lower is better)
Translates to: QLQGSQRGQETLQLQKCCPFTFA*LLRNSI
Trigger: AATGCTGTTTCTCAGGAGCAAGGCGAACGTGAAAGG...ACAGCACTTCTGGAGCTGCAGCGTCTCCTGTCCTCTCTGAGAGCCTTGTAGTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR CAA 90 bp AGCTTCGTACCCAACATGCCGAAGCAGCTTCCTTCTCTGGAACATTCACACCTATGCAGAGCCGCTGCCTaGGCTGGTTCTAGGTGCAAA +
Preference number: 3 (lower is better)
Translates to: SFVPNMPKQLPSLEHSHLCRAAA*AGSRCK
Trigger: TTTGCACCTAGAACCAGCCAAGGCAGCGGCTCTGCA...TAGGTGTGAATGTTCCAGAGAAGGAAGCTGCTTCGGCATGTTGGGTACGAAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR CAA 90 bp GCTGAGGGCGGAGGTCACGGGCTGAGTTGGGGCTCTGGCTTAGTTTTTGAGGGTAATAGACCCCCATCTTaGGTAACAGAAGTGGCTTTA +
Preference number: 3 (lower is better)
Translates to: AEGGGHGLSWGSGLVFEGNRPPS*VTEVAL
Trigger: TAAAGCCACTTCTGTTACCAAAGATGGGGGTCTATT...ACCCTCAAAAACTAAGCCAGAGCCCCAACTCAGCCCGTGACCTCCGCCCTCAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR TCA 72 bp GTGAGACAGCACGGGCTTGCTCATTTAGAGCTTAGGTaGCACGGCCCCTGCACGTGGCTTTATGTTACTGTT +
Preference number: 3 (lower is better)
Translates to: VRQHGLAHLELR*HGPCTWLYVTV
Trigger: AACAGTAACATAAAGCCACGTGCAGGGGCCGTGTCACCTAAGCTCTAAATGAGCAAGCCCGTGCTGTCTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR TCA 72 bp CTCGTTATGGTGGACTGGCTGCTGGGACAGTCCTGTTaGGCTAACTGGGATGTCTACACATACTCCTGCCAA +
Preference number: 3 (lower is better)
Translates to: LVMVDWLLGQSC*ANWDVYTYSCQ
Trigger: TTGGCAGGAGTATGTGTAGACATCCCAGTTAGCTCAACAGGACTGTCCCAGCAGCCAGTCCACCATAACGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR GCA 72 bp ACTAGAGCTTCAGATTTCACTTTCAAACAGCAACACTaGTCACGCCCACGTCTGAGCCAGGCCAGGCACTCT +
Preference number: 3 (lower is better)
Translates to: TRASDFTFKQQH*SRPRLSQARHS
Trigger: AGAGTGCCTGGCCTGGCTCAGACGTGGGCGTGAGCAGTGTTGCTGTTTGAAAGTGAAATCTGAAGCTCTAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR CAA 90 bp GCTGAGGGCGGAGGTCACGGGCTGAGTTGGGGCTCTGGCTTAGTTTTTGAGGGTTTATTTTGGTATCAGTaGTTACAACTGAGCAATGGG +
Preference number: 3 (lower is better)
Translates to: AEGGGHGLSWGSGLVFEGLFWYQ*LQLSNG
Trigger: CCCATTGCTCAGTTGTAACAACTGATACCAAAATAA...ACCCTCAAAAACTAAGCCAGAGCCCCAACTCAGCCCGTGACCTCCGCCCTCAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR CAA 90 bp CCAAGGTTTCCTCCTGGCAGACACTGTGTCAGTCCTGACCCTAGGAAAGCGCACATGATGGTCAATGACTaGGCTAGCACACAGCTAAAA +
Preference number: 3 (lower is better)
Translates to: PRFPPGRHCVSPDPRKAHMMVND*ASTQLK
Trigger: TTTTAGCTGTGTGCTAGCCAAGTCATTGACCATCAT...GTGCGCTTTCCTAGGGTCAGGACTGACACAGTGTCTGCCAGGAGGAAACCTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR TCA 72 bp AGGGCCTCTGCGCACGGCAAAGAACCATCTTCCAAATaGGTTAACAACTCTGATCTTTGCCAAGCCAGAGGC +
Preference number: 3 (lower is better)
Translates to: RASAHGKEPSSK*VNNSDLCQARG
Trigger: GCCTCTGGCTTGGCAAAGATCAGAGTTGTTAACTCATTTGGAAGATGGTTCTTTGCCGTGCGCAGAGGCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR TCA 72 bp TGTTCAAGGAGGAGGGACTCTATCCTAAGGCTGTTGTaGGGATTGCGTGTGGTCAGCACACAGAAGGGAAAC +
Preference number: 3 (lower is better)
Translates to: CSRRRDSILRLL*GLRVVSTQKGN
Trigger: GTTTCCCTTCTGTGTGCTGACCACACGCAATCCTCACAACAGCCTTAGGATAGAGTCCCTCCTCCTTGAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR CCA 72 bp AGCCAGAGGCAAAGGCAGAAGCTGAAGACTTTTCCCTaGATGGAGAAAGACAGTCAGTTCCGCGTATGTGGA +
Preference number: 3 (lower is better)
Translates to: SQRQRQKLKTFP*MEKDSQFRVCG
Trigger: TCCACATACGCGGAACTGACTGTCTTTCTCCATCCAGGGAAAAGTCTTCAGCTTCTGCCTTTGCCTCTGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR-3UTR CAA 90 bp ATCACTGCAACACGTTCCCCACTTGAGTCCCTGTGGAAGCCCAGCTCCTCAGCAGAGCACAGCTTTATTTaGGTATCAGTTGTTACAACT +
Preference number: 3 (lower is better)
Translates to: ITATRSPLESLWKPSSSAEHSFI*VSVVTT
Trigger: AGTTGTAACAACTGATACCAAAATAAAGCTGTGCTC...TGCTGAGGAGCTGGGCTTCCACAGGGACTCAAGTGGGGAACGTGTTGCAGTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR TCA 72 bp GTCTGTGACTGTGTTCTGGTCAGCTTTTGGTCAACTTaGCACAAACTGGAGTCGTCTGAGAAGAGGGAACGT +
Preference number: 3 (lower is better)
Translates to: VCDCVLVSFWST*HKLESSEKRER
Trigger: ACGTTCCCTCTTCTCAGACGACTCCAGTTTGTGTCAAGTTGACCAAAAGCTGACCAGAACACAGTCACAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236979.2
3UTR TCA 72 bp CTTGGTGATTATCACGCAGGTCTGCCTCAAGGTATGTaGCTCTGTCACACTGTCATTTCTGACCCATGTAGT +
Preference number: 3 (lower is better)
Translates to: LGDYHAGLPQGM*LCHTVISDPCS
Trigger: ACTACATGGGTCAGAAATGACAGTGTGACAGAGTCACATACCTTGAGGCAGACCTGCGTGATAATCACCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR TCA 72 bp TCGGCTTTGAAACACGGGTGGAAAAAGCAATCTTGGTaGTTATCACGCAGGTCTGCCTCAAGGTATGTGACT +
Preference number: 3 (lower is better)
Translates to: SALKHGWKKQSW*LSRRSASRYVT
Trigger: AGTCACATACCTTGAGGCAGACCTGCGTGATAATCACCAAGATTGCTTTTTCCACCCGTGTTTCAAAGCCGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR TCA 72 bp GTGACTCAGGCGAGGGCTCATTCTTCATGTCGGCTTTaGAACACGGGTGGAAAAAGCAATCTTGGTGATTAT +
Preference number: 3 (lower is better)
Translates to: VTQARAHSSCRL*NTGGKSNLGDY
Trigger: ATAATCACCAAGATTGCTTTTTCCACCCGTGTTTCAAAGCCGACATGAAGAATGAGCCCTCGCCTGAGTCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR TCA 72 bp GACATCCTCACAGCAGAGCACCTCTATGCTCACAAATaGCATCATTTACCCACACAAGATGGCAACAGTCTC +
Preference number: 3 (lower is better)
Translates to: DILTAEHLYAHK*HHLPTQDGNSL
Trigger: GAGACTGTTGCCATCTTGTGTGGGTAAATGATGTCATTTGTGAGCATAGAGGTGCTCTGCTGTGAGGATGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR CCA 72 bp AGGAAGGCAGAGGACTTTATTCCTCTACACCTCACTTaGTTCACAAAACACACTGTGTCCGATATGGGTAGA +
Preference number: 3 (lower is better)
Translates to: RKAEDFIPLHLT*FTKHTVSDMGR
Trigger: TCTACCCATATCGGACACAGTGTGTTTTGTGAACCAAGTGAGGTGTAGAGGAATAAAGTCCTCTGCCTTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR GCA 72 bp GTGGAAAAAGCAATCTTGGTGATTATCACGCAGGTCTaGCTCAAGGTATGTGACTCTGTCACACTGTCATTT +
Preference number: 3 (lower is better)
Translates to: VEKAILVIITQV*LKVCDSVTLSF
Trigger: AAATGACAGTGTGACAGAGTCACATACCTTGAGGCAGACCTGCGTGATAATCACCAAGATTGCTTTTTCCAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR CCA 72 bp CACAAAGGCGCACAGCTTAGGCCCATCTCAAGTTACTaGAAATTTACACACGAATGGATAACCACTACTGAT +
Preference number: 3 (lower is better)
Translates to: HKGAQLRPISSY*KFTHEWITTTD
Trigger: ATCAGTAGTGGTTATCCATTCGTGTGTAAATTTCCAGTAACTTGAGATGGGCCTAAGCTGTGCGCCTTTGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR CCA 72 bp AGGCCCATCTCAAGTTACTGGAAATTTACACACGAATaGATAACCACTACTGATAAAGGCAGGTTATTTAAA +
Preference number: 3 (lower is better)
Translates to: RPISSYWKFTHE*ITTTDKGRLFK
Trigger: TTTAAATAACCTGCCTTTATCAGTAGTGGTTATCCATTCGTGTGTAAATTTCCAGTAACTTGAGATGGGCCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR GCA 90 bp ATCACTGCAACACGTTCCCCACTTGAGTCCCTGTGGAAGCCCAGCTCCTCAGCAGGGGAGGCCGATGTGTaGGGCAGACTTCGGCACCTT +
Preference number: 4 (lower is better)
Translates to: ITATRSPLESLWKPSSSAGEADV*GRLRHL
Trigger: AAGGTGCCGAAGTCTGCCGCACACATCGGCCTCCCC...TGCTGAGGAGCTGGGCTTCCACAGGGACTCAAGTGGGGAACGTGTTGCAGTGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR CAA 72 bp GAGGGCGGCCACAGGTGGAAGTGTACTGGAAAGTCCTaGCGGTTCTTTCCTTGGGTCGGGAGGCTGTCGAGA +
Preference number: 4 (lower is better)
Translates to: EGGHRWKCTGKS*RFFPWVGRLSR
Trigger: TCTCGACAGCCTCCCGACCCAAGGAAAGAACCGCAAGGACTTTCCAGTACACTTCCACCTGTGGCCGCCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR TCA 90 bp CCAAGGTTTCCTCCTGGCAGACACTGTGTCAGTCCTGACCCTAGGAAAGCGCACCACGGGGTCCCAGTATaGCCAGTGTTGGCCAGCAAG +
Preference number: 4 (lower is better)
Translates to: PRFPPGRHCVSPDPRKAHHGVPV*PVLASK
Trigger: CTTGCTGGCCAACACTGGTCATACTGGGACCCCGTG...GTGCGCTTTCCTAGGGTCAGGACTGACACAGTGTCTGCCAGGAGGAAACCTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR GCA 90 bp CTAAACAGGACCCCTCCCTTTCACGTTCGCCTTGCTCCTGAGAAACAGCATTTCTACTCGAGCGAGGTCTaGGCGGGCAGCAGGCCCGAG +
Preference number: 4 (lower is better)
Translates to: LNRTPPFHVRLAPEKQHFYSSEV*AGSRPE
Trigger: CTCGGGCCTGCTGCCCGCGCAGACCTCGCTCGAGTA...GAAATGCTGTTTCTCAGGAGCAAGGCGAACGTGAAAGGGAGGGGTCCTGTTTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR CCA 90 bp TCCAGCAGCCCAGCTCTGCAGGGCAAGACACTGCTAGAGTCTATACTCCTGCCAGGTCAGCTTTGCTCCTaGCGGGAGCTGGAGCTTGAG +
Preference number: 4 (lower is better)
Translates to: SSSPALQGKTLLESILLPGQLCS*RELELE
Trigger: CTCAAGCTCCAGCTCCCGCCAGGAGCAAAGCTGACC...TGGCAGGAGTATAGACTCTAGCAGTGTCTTGCCCTGCAGAGCTGGGCTGCTGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR GCA 90 bp CTAAACAGGACCCCTCCCTTTCACGTTCGCCTTGCTCCTGAGAAACAGCATTTCGGCACCGCTAGGTCCTaGTCCCAGCCGTCCACCTTC +
Preference number: 4 (lower is better)
Translates to: LNRTPPFHVRLAPEKQHFGTARS*SQPSTF
Trigger: GAAGGTGGACGGCTGGGAGCAGGACCTAGCGGTGCC...GAAATGCTGTTTCTCAGGAGCAAGGCGAACGTGAAAGGGAGGGGTCCTGTTTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR GCA 90 bp CAACTACAAGGCTCTCAGAGAGGACAGGAGACGCTGCAGCTCCAGAAGTGCTGTAGCTTGAGCCTAAGCTaGAGAGCCTGGCCCGGATGC +
Preference number: 4 (lower is better)
Translates to: QLQGSQRGQETLQLQKCCSLSLS*RAWPGC
Trigger: GCATCCGGGCCAGGCTCTGCAGCTTAGGCTCAAGCT...ACAGCACTTCTGGAGCTGCAGCGTCTCCTGTCCTCTCTGAGAGCCTTGTAGTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR GCA 90 bp GTCCAGCAGCCCAGCTCTGCAGGGCAAGACACTGCTAGAGTCTATACTCCTGCCGAGACTTCAAGCTCCTaGCAAAGGCTGGCATCTGCA +
Preference number: 4 (lower is better)
Translates to: VQQPSSAGQDTARVYTPAETSSS*QRLASA
Trigger: TGCAGATGCCAGCCTTTGGCAGGAGCTTGAAGTCTC...GGCAGGAGTATAGACTCTAGCAGTGTCTTGCCCTGCAGAGCTGGGCTGCTGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR GCA 90 bp TCCAGCAGCCCAGCTCTGCAGGGCAAGACACTGCTAGAGTCTATACTCCTGCCACGGCTGGGCAAAGCCTaGCTTGTGAGGATATGCGTT +
Preference number: 4 (lower is better)
Translates to: SSSPALQGKTLLESILLPRLGKA*LVRICV
Trigger: AACGCATATCCTCACAAGGCAGGCTTTGCCCAGCCG...TGGCAGGAGTATAGACTCTAGCAGTGTCTTGCCCTGCAGAGCTGGGCTGCTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR TCA 90 bp TGGTCAGCTTTTGGTCAACTTGACACAAACTGGAGTCGTCTGAGAAGAGGGAACCGTCCCACGGGGAGCTaGTGGGCTGCTTGTCTCCCT +
Preference number: 4 (lower is better)
Translates to: WSAFGQLDTNWSRLRRGNRPTGS*WAACLP
Trigger: AGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACG...GTTCCCTCTTCTCAGACGACTCCAGTTTGTGTCAAGTTGACCAAAAGCTGACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236979.2
CDS-3UTR GCA 90 bp GCTGAGGGCGGAGGTCACGGGCTGAGTTGGGGCTCTGGCTTAGTTTTTGAGGGTCAGGCAGCACATGAATaGAGTTTATGCAGCAGTAGG +
Preference number: 4 (lower is better)
Translates to: AEGGGHGLSWGSGLVFEGQAAHE*SLCSSR
Trigger: CCTACTGCTGCATAAACTGCATTCATGTGCTGCCTG...ACCCTCAAAAACTAAGCCAGAGCCCCAACTCAGCCCGTGACCTCCGCCCTCAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR CCA 90 bp CCAAGGCAGACAGAGTTGTCTCAGGACAACTACAAGGCTCTCAGAGAGGACAGGTGGAACTGGCATCACTaGCGTCCCCAGTCCCTGCTA +
Preference number: 4 (lower is better)
Translates to: PRQTELSQDNYKALREDRWNWHH*RPQSLL
Trigger: TAGCAGGGACTGGGGACGCCAGTGATGCCAGTTCCA...CCTGTCCTCTCTGAGAGCCTTGTAGTTGTCCTGAGACAACTCTGTCTGCCTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR CCA 90 bp GCTGAGGGCGGAGGTCACGGGCTGAGTTGGGGCTCTGGCTTAGTTTTTGAGGGTGTCAGACTTGCAGACTaGGAGCACAGAAACTGTTCT +
Preference number: 4 (lower is better)
Translates to: AEGGGHGLSWGSGLVFEGVRLAD*EHRNCS
Trigger: AGAACAGTTTCTGTGCTCCCAGTCTGCAAGTCTGAC...ACCCTCAAAAACTAAGCCAGAGCCCCAACTCAGCCCGTGACCTCCGCCCTCAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR TCA 90 bp AACCTCTCCAGGATCCCTTCCAGTGCTGTTTCTTACGGGGTTAAAGAAAACACACGTCCCACGGGGAGCTaGTGGGCTGCTTGTCTCCCT +
Preference number: 4 (lower is better)
Translates to: NLSRIPSSAVSYGVKENTRPTGS*WAACLP
Trigger: AGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACG...TGTGTTTTCTTTAACCCCGTAAGAAACAGCACTGGAAGGGATCCTGGAGAGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR GCA 90 bp GTCCAGCAGCCCAGCTCTGCAGGGCAAGACACTGCTAGAGTCTATACTCCTGCCTTTTCTTTGGCAGTGTaGCAGAGTCTAGGAGGAGTG +
Preference number: 4 (lower is better)
Translates to: VQQPSSAGQDTARVYTPAFSLAV*QSLGGV
Trigger: CACTCCTCCTAGACTCTGGCACACTGCCAAAGAAAA...GGCAGGAGTATAGACTCTAGCAGTGTCTTGCCCTGCAGAGCTGGGCTGCTGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR GCA 90 bp TCCAGCAGCCCAGCTCTGCAGGGCAAGACACTGCTAGAGTCTATACTCCTGCCATCCCTTCATCATACATaGGCTGCTGTCTGCACTGCA +
Preference number: 4 (lower is better)
Translates to: SSSPALQGKTLLESILLPSLHHT*AAVCTA
Trigger: TGCAGTGCAGACAGCAGCGCATGTATGATGAAGGGA...TGGCAGGAGTATAGACTCTAGCAGTGTCTTGCCCTGCAGAGCTGGGCTGCTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR GCA 90 bp CCAAGGTTTCCTCCTGGCAGACACTGTGTCAGTCCTGACCCTAGGAAAGCGCACGTTATCTGCAAAGGCTaGCTGAACACGACTCCCTTC +
Preference number: 4 (lower is better)
Translates to: PRFPPGRHCVSPDPRKAHVICKG*LNTTPF
Trigger: GAAGGGAGTCGTGTTCAGGCAGCCTTTGCAGATAAC...GTGCGCTTTCCTAGGGTCAGGACTGACACAGTGTCTGCCAGGAGGAAACCTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR CCA 90 bp CAACTACAAGGCTCTCAGAGAGGACAGGAGACGCTGCAGCTCCAGAAGTGCTGTATGACCAAGATCCTATaGTGCCCTGTGTCTGCCACC +
Preference number: 4 (lower is better)
Translates to: QLQGSQRGQETLQLQKCCMTKIL*CPVSAT
Trigger: GGTGGCAGACACAGGGCACCATAGGATCTTGGTCAT...ACAGCACTTCTGGAGCTGCAGCGTCTCCTGTCCTCTCTGAGAGCCTTGTAGTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR CCA 90 bp GCTGTTGTGAGGATTGCGTGTGGTCAGCACACAGAAGGGAAACTCCCAGCAGGGCAGACTTCGGCACCTTaGGCACTGTCTTCTGTTTCT +
Preference number: 4 (lower is better)
Translates to: AVVRIACGQHTEGKLPAGQTSAP*ALSSVS
Trigger: AGAAACAGAAGACAGTGCCCAAGGTGCCGAAGTCTG...CCCTGCTGGGAGTTTCCCTTCTGTGTGCTGACCACACGCAATCCTCACAACAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR CCA 90 bp CCAAGGCAGACAGAGTTGTCTCAGGACAACTACAAGGCTCTCAGAGAGGACAGGAAGCTGGCTGGGTGCTaGTTATCTGCAAAGGCTGCC +
Preference number: 4 (lower is better)
Translates to: PRQTELSQDNYKALREDRKLAGC*LSAKAA
Trigger: GGCAGCCTTTGCAGATAACCAGCACCCAGCCAGCTT...CCTGTCCTCTCTGAGAGCCTTGTAGTTGTCCTGAGACAACTCTGTCTGCCTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR TCA 90 bp CAACTACAAGGCTCTCAGAGAGGACAGGAGACGCTGCAGCTCCAGAAGTGCTGTCACCACAGCTTCCAGTaGCAAGCAATGGGTAGGAAT +
Preference number: 4 (lower is better)
Translates to: QLQGSQRGQETLQLQKCCHHSFQ*QAMGRN
Trigger: ATTCCTACCCATTGCTTGTCACTGGAAGCTGTGGTG...ACAGCACTTCTGGAGCTGCAGCGTCTCCTGTCCTCTCTGAGAGCCTTGTAGTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR GCA 90 bp CAACTACAAGGCTCTCAGAGAGGACAGGAGACGCTGCAGCTCCAGAAGTGCTGTCAGCACTGTCAGACTTaGAGACTGGGAGCACAGAAA +
Preference number: 4 (lower is better)
Translates to: QLQGSQRGQETLQLQKCCQHCQT*RLGAQK
Trigger: TTTCTGTGCTCCCAGTCTGCAAGTCTGACAGTGCTG...ACAGCACTTCTGGAGCTGCAGCGTCTCCTGTCCTCTCTGAGAGCCTTGTAGTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR CCA 90 bp GCTGTTGTGAGGATTGCGTGTGGTCAGCACACAGAAGGGAAACTCCCAGCAGGGTCGTTAACCACAGGGTaGGTGATGTTGTATCTGAGG +
Preference number: 4 (lower is better)
Translates to: AVVRIACGQHTEGKLPAGSLTTG*VMLYLR
Trigger: CCTCAGATACAACATCACCCACCCTGTGGTTAACGA...CCCTGCTGGGAGTTTCCCTTCTGTGTGCTGACCACACGCAATCCTCACAACAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR GCA 90 bp GCTGTTGTGAGGATTGCGTGTGGTCAGCACACAGAAGGGAAACTCCCAGCAGGGCTTCGCATTGATGCCTaGTCCATCAACATCACCAAA +
Preference number: 4 (lower is better)
Translates to: AVVRIACGQHTEGKLPAGLRIDA*SINITK
Trigger: TTTGGTGATGTTGATGGAGCAGGCATCAATGCGAAG...CCCTGCTGGGAGTTTCCCTTCTGTGTGCTGACCACACGCAATCCTCACAACAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR GCA 90 bp GCTGTTGTGAGGATTGCGTGTGGTCAGCACACAGAAGGGAAACTCCCAGCAGGGCGCTGCTGTCTGCACTaGAGTAATAAAGAAACACGA +
Preference number: 4 (lower is better)
Translates to: AVVRIACGQHTEGKLPAGRCCLH*SNKETR
Trigger: TCGTGTTTCTTTATTACTGCAGTGCAGACAGCAGCG...CCCTGCTGGGAGTTTCCCTTCTGTGTGCTGACCACACGCAATCCTCACAACAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR CCA 90 bp CCAAGGCAGACAGAGTTGTCTCAGGACAACTACAAGGCTCTCAGAGAGGACAGGGATGAGTCCCTGCCATaGCTATCCACAGGATGTCAT +
Preference number: 4 (lower is better)
Translates to: PRQTELSQDNYKALREDRDESLP*LSTGCH
Trigger: ATGACATCCTGTGGATAGCCATGGCAGGGACTCATC...CCTGTCCTCTCTGAGAGCCTTGTAGTTGTCCTGAGACAACTCTGTCTGCCTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR CCA 90 bp CTAAACAGGACCCCTCCCTTTCACGTTCGCCTTGCTCCTGAGAAACAGCATTTCCTGACTCCGCAAAACTaGAACTGGCATCACTGGCGT +
Preference number: 4 (lower is better)
Translates to: LNRTPPFHVRLAPEKQHFLTPQN*NWHHWR
Trigger: ACGCCAGTGATGCCAGTTCCAGTTTTGCGGAGTCAG...GAAATGCTGTTTCTCAGGAGCAAGGCGAACGTGAAAGGGAGGGGTCCTGTTTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR GCA 90 bp CTAAACAGGACCCCTCCCTTTCACGTTCGCCTTGCTCCTGAGAAACAGCATTTCCTTTATCAGAGAATCTaGGCTCCAGGGCGTGGAGAT +
Preference number: 4 (lower is better)
Translates to: LNRTPPFHVRLAPEKQHFLYQRI*APGRGD
Trigger: ATCTCCACGCCCTGGAGCGCAGATTCTCTGATAAAG...GAAATGCTGTTTCTCAGGAGCAAGGCGAACGTGAAAGGGAGGGGTCCTGTTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR GCA 90 bp AGCTTCGTACCCAACATGCCGAAGCAGCTTCCTTCTCTGGAACATTCACACCTACCAAAGGCTGGCATCTaGATCGTTAACCACAGGGTG +
Preference number: 4 (lower is better)
Translates to: SFVPNMPKQLPSLEHSHLPKAGI*IVNHRV
Trigger: CACCCTGTGGTTAACGATGCAGATGCCAGCCTTTGG...TAGGTGTGAATGTTCCAGAGAAGGAAGCTGCTTCGGCATGTTGGGTACGAAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR GCA 90 bp CCAAGGCAGACAGAGTTGTCTCAGGACAACTACAAGGCTCTCAGAGAGGACAGGTATCTGATGAGTCCCTaGCATGGCTATCCACAGGAT +
Preference number: 4 (lower is better)
Translates to: PRQTELSQDNYKALREDRYLMSP*HGYPQD
Trigger: ATCCTGTGGATAGCCATGGCAGGGACTCATCAGATA...CCTGTCCTCTCTGAGAGCCTTGTAGTTGTCCTGAGACAACTCTGTCTGCCTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR GCA 90 bp TCCAGCAGCCCAGCTCTGCAGGGCAAGACACTGCTAGAGTCTATACTCCTGCCAACATGCGCTGCTGTCTaGACTGCAGTAATAAAGAAA +
Preference number: 4 (lower is better)
Translates to: SSSPALQGKTLLESILLPTCAAV*TAVIKK
Trigger: TTTCTTTATTACTGCAGTGCAGACAGCAGCGCATGT...TGGCAGGAGTATAGACTCTAGCAGTGTCTTGCCCTGCAGAGCTGGGCTGCTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR TCA 90 bp AGCTTCGTACCCAACATGCCGAAGCAGCTTCCTTCTCTGGAACATTCACACCTAGGAAACTTAGCCGAGTaGACACCGACAATCAGAAGG +
Preference number: 4 (lower is better)
Translates to: SFVPNMPKQLPSLEHSHLGNLAE*TPTIRR
Trigger: CCTTCTGATTGTCGGTGTTCACTCGGCTAAGTTTCC...TAGGTGTGAATGTTCCAGAGAAGGAAGCTGCTTCGGCATGTTGGGTACGAAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR TCA 90 bp CAACTACAAGGCTCTCAGAGAGGACAGGAGACGCTGCAGCTCCAGAAGTGCTGTCAATTTTTCCATCTCTaGTCTGTCCCCTGTCTTTGT +
Preference number: 4 (lower is better)
Translates to: QLQGSQRGQETLQLQKCCQFFHL*SVPCLC
Trigger: ACAAAGACAGGGGACAGATCAGAGATGGAAAAATTG...ACAGCACTTCTGGAGCTGCAGCGTCTCCTGTCCTCTCTGAGAGCCTTGTAGTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR TCA 90 bp GTCCAGCAGCCCAGCTCTGCAGGGCAAGACACTGCTAGAGTCTATACTCCTGCCGTGGCAGAGACTCTTTaGAGAGTTTTATTCCAATTT +
Preference number: 4 (lower is better)
Translates to: VQQPSSAGQDTARVYTPAVAETL*RVLFQF
Trigger: AAATTGGAATAAAACTCTTCAAAGAGTCTCTGCCAC...GGCAGGAGTATAGACTCTAGCAGTGTCTTGCCCTGCAGAGCTGGGCTGCTGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR TCA 90 bp AGCTTCGTACCCAACATGCCGAAGCAGCTTCCTTCTCTGGAACATTCACACCTAAGGGAACAGCAATGGTaGAGGTGGCAGAGACTCTTT +
Preference number: 4 (lower is better)
Translates to: SFVPNMPKQLPSLEHSHLREQQW*RWQRLF
Trigger: AAAGAGTCTCTGCCACCTTCACCATTGCTGTTCCCT...TAGGTGTGAATGTTCCAGAGAAGGAAGCTGCTTCGGCATGTTGGGTACGAAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR GCA 90 bp GCTTTTGGTCAACTTGACACAAACTGGAGTCGTCTGAGAAGAGGGAACGTCAACACCAAGATCCTATGGTaGCCTGTGTCTGCCACCACA +
Preference number: 4 (lower is better)
Translates to: AFGQLDTNWSRLRRGNVNTKILW*PVSATT
Trigger: TGTGGTGGCAGACACAGGGCACCATAGGATCTTGGT...GTTGACGTTCCCTCTTCTCAGACGACTCCAGTTTGTGTCAAGTTGACCAAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236979.2
CDS-3UTR GCA 90 bp GGTCAACTTGACACAAACTGGAGTCGTCTGAGAAGAGGGAACGTCAACAGAGAAAGCTACACCCTCCAATaGTGCTCTGAATGCGCCCAT +
Preference number: 4 (lower is better)
Translates to: GQLDTNWSRLRRGNVNRESYTLQ*CSECAH
Trigger: ATGGGCGCATTCAGAGCAGCATTGGAGGGTGTAGCT...TTCTCTGTTGACGTTCCCTCTTCTCAGACGACTCCAGTTTGTGTCAAGTTGACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236979.2
CDS-3UTR CCA 90 bp TGGTCAGCTTTTGGTCAACTTGACACAAACTGGAGTCGTCTGAGAAGAGGGAACATGACCAAGATCCTATaGTGCCCTGTGTCTGCCACC +
Preference number: 4 (lower is better)
Translates to: WSAFGQLDTNWSRLRRGNMTKIL*CPVSAT
Trigger: GGTGGCAGACACAGGGCACCATAGGATCTTGGTCAT...GTTCCCTCTTCTCAGACGACTCCAGTTTGTGTCAAGTTGACCAAAAGCTGACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236979.2
CDS-3UTR CCA 90 bp TCCAGCAGCCCAGCTCTGCAGGGCAAGACACTGCTAGAGTCTATACTCCTGCCAAAATCGCCGGCTGATTaGAAATATTCTCTATGTCTC +
Preference number: 4 (lower is better)
Translates to: SSSPALQGKTLLESILLPKSPAD*KYSLCL
Trigger: GAGACATAGAGAATATTTCCAATCAGCCGGCGATTT...TGGCAGGAGTATAGACTCTAGCAGTGTCTTGCCCTGCAGAGCTGGGCTGCTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR GCA 90 bp AACCTCTCCAGGATCCCTTCCAGTGCTGTTTCTTACGGGGTTAAAGAAAACACAACCAAGATCCTATGGTaGCCTGTGTCTGCCACCACA +
Preference number: 4 (lower is better)
Translates to: NLSRIPSSAVSYGVKENTTKILW*PVSATT
Trigger: TGTGGTGGCAGACACAGGGCACCATAGGATCTTGGT...TGTGTTTTCTTTAACCCCGTAAGAAACAGCACTGGAAGGGATCCTGGAGAGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR CCA 90 bp CAACTACAAGGCTCTCAGAGAGGACAGGAGACGCTGCAGCTCCAGAAGTGCTGTTATAGCTACACCCTGTaGAGAATTAAAAGACGACTC +
Preference number: 4 (lower is better)
Translates to: QLQGSQRGQETLQLQKCCYSYTL*RIKRRL
Trigger: GAGTCGTCTTTTAATTCTCCACAGGGTGTAGCTATA...ACAGCACTTCTGGAGCTGCAGCGTCTCCTGTCCTCTCTGAGAGCCTTGTAGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR CCA 90 bp TTCTGGTCAGCTTTTGGTCAACTTGACACAAACTGGAGTCGTCTGAGAAGAGGGGATGAGTCCCTGCCATaGCTATCCACAGGATGTCAT +
Preference number: 4 (lower is better)
Translates to: FWSAFGQLDTNWSRLRRGDESLP*LSTGCH
Trigger: ATGACATCCTGTGGATAGCCATGGCAGGGACTCATC...CCCTCTTCTCAGACGACTCCAGTTTGTGTCAAGTTGACCAAAAGCTGACCAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236979.2
CDS-3UTR TCA 90 bp AACCTCTCCAGGATCCCTTCCAGTGCTGTTTCTTACGGGGTTAAAGAAAACACAGCTGAAGCTTCGCATTaGTGCCTGCTCCATCAACAT +
Preference number: 4 (lower is better)
Translates to: NLSRIPSSAVSYGVKENTAEASH*CLLHQH
Trigger: ATGTTGATGGAGCAGGCATCAATGCGAAGCTTCAGC...TGTGTTTTCTTTAACCCCGTAAGAAACAGCACTGGAAGGGATCCTGGAGAGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR GCA 90 bp GGTCAACTTGACACAAACTGGAGTCGTCTGAGAAGAGGGAACGTCAACAGAGAATATCTGATGAGTCCCTaGCATGGCTATCCACAGGAT +
Preference number: 4 (lower is better)
Translates to: GQLDTNWSRLRRGNVNREYLMSP*HGYPQD
Trigger: ATCCTGTGGATAGCCATGGCAGGGACTCATCAGATA...TTCTCTGTTGACGTTCCCTCTTCTCAGACGACTCCAGTTTGTGTCAAGTTGACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236979.2
CDS-3UTR GCA 90 bp GGTCAACTTGACACAAACTGGAGTCGTCTGAGAAGAGGGAACGTCAACAGAGAATTTTCTTTGGCAGTGTaGCAGAGTCTAGGAGGAGTG +
Preference number: 4 (lower is better)
Translates to: GQLDTNWSRLRRGNVNREFSLAV*QSLGGV
Trigger: CACTCCTCCTAGACTCTGGCACACTGCCAAAGAAAA...TTCTCTGTTGACGTTCCCTCTTCTCAGACGACTCCAGTTTGTGTCAAGTTGACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236979.2
CDS-3UTR GCA 90 bp AGCTTCGTACCCAACATGCCGAAGCAGCTTCCTTCTCTGGAACATTCACACCTATGCCTTGTGAGGATATaGGTTGTTTCGGTTCTCTTC +
Preference number: 4 (lower is better)
Translates to: SFVPNMPKQLPSLEHSHLCLVRI*VVSVLF
Trigger: GAAGAGAACCGAAACAACGCATATCCTCACAAGGCA...TAGGTGTGAATGTTCCAGAGAAGGAAGCTGCTTCGGCATGTTGGGTACGAAGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR CCA 90 bp AGCTTCGTACCCAACATGCCGAAGCAGCTTCCTTCTCTGGAACATTCACACCTAAGGATGTCATTTCTTTaGACCTCTGAACCTGAGGTC +
Preference number: 4 (lower is better)
Translates to: SFVPNMPKQLPSLEHSHLRMSFL*TSEPEV
Trigger: GACCTCAGGTTCAGAGGTCCAAAGAAATGACATCCT...TAGGTGTGAATGTTCCAGAGAAGGAAGCTGCTTCGGCATGTTGGGTACGAAGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR TCA 90 bp AACCTCTCCAGGATCCCTTCCAGTGCTGTTTCTTACGGGGTTAAAGAAAACACAAGATCAGGCAGCACATaGATGCAGTTTATGCAGCAG +
Preference number: 4 (lower is better)
Translates to: NLSRIPSSAVSYGVKENTRSGST*MQFMQQ
Trigger: CTGCTGCATAAACTGCATTCATGTGCTGCCTGATCT...TGTGTTTTCTTTAACCCCGTAAGAAACAGCACTGGAAGGGATCCTGGAGAGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR TCA 90 bp AACCTCTCCAGGATCCCTTCCAGTGCTGTTTCTTACGGGGTTAAAGAAAACACAGATGGGGTCTGTTCTTaGAGTAGCCATTCATTGCCT +
Preference number: 4 (lower is better)
Translates to: NLSRIPSSAVSYGVKENTDGVCS*SSHSLP
Trigger: AGGCAATGAATGGCTACTTCAAGAACAGACCCCATC...TGTGTTTTCTTTAACCCCGTAAGAAACAGCACTGGAAGGGATCCTGGAGAGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR CCA 90 bp GCTTTTGGTCAACTTGACACAAACTGGAGTCGTCTGAGAAGAGGGAACGTCAACAGGATGTCATTTCTTTaGACCTCTGAACCTGAGGTC +
Preference number: 4 (lower is better)
Translates to: AFGQLDTNWSRLRRGNVNRMSFL*TSEPEV
Trigger: GACCTCAGGTTCAGAGGTCCAAAGAAATGACATCCT...GTTGACGTTCCCTCTTCTCAGACGACTCCAGTTTGTGTCAAGTTGACCAAAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236979.2
3UTR CAA 72 bp CCAGTATCTGAACTTGTATACTGGATTTCCACTGCATaGTTTAGGCATGACATCCTCACAGCAGAGCACCTC +
Preference number: 4 (lower is better)
Translates to: PVSELVYWISTA*FRHDILTAEHL
Trigger: GAGGTGCTCTGCTGTGAGGATGTCATGCCTAAACAATGCAGTGGAAATCCAGTATACAAGTTCAGATACTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR CCA 90 bp AACCTCTCCAGGATCCCTTCCAGTGCTGTTTCTTACGGGGTTAAAGAAAACACAATCTTTCTTATAAGGTaGTTCTCAGTGTCGGCCACA +
Preference number: 4 (lower is better)
Translates to: NLSRIPSSAVSYGVKENTIFLIR*FSVSAT
Trigger: TGTGGCCGACACTGAGAACCACCTTATAAGAAAGAT...TGTGTTTTCTTTAACCCCGTAAGAAACAGCACTGGAAGGGATCCTGGAGAGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR GCA 90 bp GGTCAACTTGACACAAACTGGAGTCGTCTGAGAAGAGGGAACGTCAACAGAGAAATAGATGACATTATCTaGTATAGCTACACCCTCCAA +
Preference number: 4 (lower is better)
Translates to: GQLDTNWSRLRRGNVNREIDDII*YSYTLQ
Trigger: TTGGAGGGTGTAGCTATAGCAGATAATGTCATCTAT...TTCTCTGTTGACGTTCCCTCTTCTCAGACGACTCCAGTTTGTGTCAAGTTGACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236979.2
CDS-3UTR TCA 90 bp AGACAGCTGTCCACTTCCTCTGTGTACACTCTTAGTGCTGATGTGACTGTTCAAATTAAAAGACGACTCTaGAAACATCCCATCTTTCCT +
Preference number: 4 (lower is better)
Translates to: RQLSTSSVYTLSADVTVQIKRRL*KHPIFP
Trigger: AGGAAAGATGGGATGTTTTCAGAGTCGTCTTTTAAT...TTGAACAGTCACATCAGCACTAAGAGTGTACACAGAGGAAGTGGACAGCTGTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR CAA 72 bp TTGAGAAGATTAGATTACTCTCTAAAGTACTGGCCATaGAGTATTCTCAGAGGTAGAATTTCAGTGAGACAG +
Preference number: 4 (lower is better)
Translates to: LRRLDYSLKYWP*SILRGRISVRQ
Trigger: CTGTCTCACTGAAATTCTACCTCTGAGAATACTCAATGGCCAGTACTTTAGAGAGTAATCTAATCTTCTCAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
3UTR CAA 72 bp CTGGTAAATGAAAGGACTCTAAATAGACCCCCATCTTaGGTAACAGAAGTGGCTTTAGAAAAATTATTAGTG +
Preference number: 4 (lower is better)
Translates to: LVNERTLNRPPS*VTEVALEKLLV
Trigger: CACTAATAATTTTTCTAAAGCCACTTCTGTTACCAAAGATGGGGGTCTATTTAGAGTCCTTTCATTTACCAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS GCA 90 bp TCTTGCTGGGTGACGGCGTCCAGCAGGGCGTACTCGAGCGAGGTCTaGGCGGGCAGCAGGCCCGAGAGGCTCGCGCCGCGCGCTCCGGGA +
Preference number: 5 (lower is better)
Translates to: SCWVTASSRAYSSEV*AGSRPERLAPRAPG
Trigger: TCCCGGAGCGCGCGGCGCGAGCCTCTCGGGCCTGCTGCCCGCGCAGACCTCGCTCGAGTACGCCCTGCTGGACGCCGTCACCCAGCAAGA
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS TCA 90 bp GGACCTCTGAACCTGAGGTCCCAAGCGCAACGTCCCACGGGGAGCTaGTGGGCTGCTTGTCTCCCTCCTCGCCCCCTTCTGTATCTGTCC +
Preference number: 5 (lower is better)
Translates to: GPLNLRSQAQRPTGS*WAACLPPRPLLYLS
Trigger: GGACAGATACAGAAGGGGGCGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGGGACCTCAGGTTCAGAGGTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071423.7
ENSMUST00000236979.2
CDS GCA 90 bp GGTGCTTCACAGCTCCGTCTCTCAGCGAGACGGTCCGCACGGTGCTaGTCTCACTGTCAGCCACAAAGAGGCAGCTCCAGGGCTCTTCTG +
Preference number: 5 (lower is better)
Translates to: GASQLRLSARRSARC*SHCQPQRGSSRALL
Trigger: CAGAAGAGCCCTGGAGCTGCCTCTTTGTGGCTGACAGTGAGAGCAGCACCGTGCGGACCGTCTCGCTGAGAGACGGAGCTGTGAAGCACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS GCA 90 bp CGAGGTGCTTCACAGCTCCGTCTCTCAGCGAGACGGTCCGCACGGTaGTGCTCTCACTGTCAGCCACAAAGAGGCAGCTCCAGGGCTCTT +
Preference number: 5 (lower is better)
Translates to: RGASQLRLSARRSAR*CSHCQPQRGSSRAL
Trigger: AAGAGCCCTGGAGCTGCCTCTTTGTGGCTGACAGTGAGAGCAGCACCGTGCGGACCGTCTCGCTGAGAGACGGAGCTGTGAAGCACCTCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR CAA 90 bp GTCCAGCAGCCCAGCTCTGCAGGGCAAGACACTGCTAGAGTCTATACTCCTGCCCGCCTTCGGTCAGCTTaGCTCCTGGCGGGAGCTGGA +
Preference number: 5 (lower is better)
Translates to: VQQPSSAGQDTARVYTPARLRSA*LLAGAG
Trigger: TCCAGCTCCCGCCAGGAGCAAAGCTGACCGAAGGCG...GGCAGGAGTATAGACTCTAGCAGTGTCTTGCCCTGCAGAGCTGGGCTGCTGGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS TCA 90 bp CCTTCTGCAGATACTGGTAGACCAACTCATCCTTCTCTTGCTGGGTaGCGGCGTCCAGCAGGGCGTACTCGAGCGAGGTCTGCGCGGGCA +
Preference number: 5 (lower is better)
Translates to: PSADTGRPTHPSLAG*RRPAGRTRARSARA
Trigger: TGCCCGCGCAGACCTCGCTCGAGTACGCCCTGCTGGACGCCGTCACCCAGCAAGAGAAGGATGAGTTGGTCTACCAGTATCTGCAGAAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS CCA 90 bp CTTGAAGTAGCCATTCATTGCCTTCAGCTTCCAGGAACCAGCAGCTaGGCGCGCCTTCGGTCAGCTTTGCTCCTGGCGGGAGCTGGAGCT +
Preference number: 5 (lower is better)
Translates to: LEVAIHCLQLPGTSS*ARLRSALLLAGAGA
Trigger: AGCTCCAGCTCCCGCCAGGAGCAAAGCTGACCGAAGGCGCGCCCAGCTGCTGGTTCCTGGAAGCTGAAGGCAATGAATGGCTACTTCAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS TCA 90 bp CCGACCACTCTCACCGATACACAAGCCTCCGGGCTCATTAAAGGCTaGCTCCGCAAAACTGGAACTGGCATCACTGGCGTCCCCAGTCCC +
Preference number: 5 (lower is better)
Translates to: PTTLTDTQASGLIKG*LRKTGTGITGVPSP
Trigger: GGGACTGGGGACGCCAGTGATGCCAGTTCCAGTTTTGCGGAGTCAGCCTTTAATGAGCCCGGAGGCTTGTGTATCGGTGAGAGTGGTCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR CAA 90 bp CCAAGGCAGACAGAGTTGTCTCAGGACAACTACAAGGCTCTCAGAGAGGACAGGGGCGGGAGCTGGAGCTaGAGCCTAAGCTGCAGAGCC +
Preference number: 5 (lower is better)
Translates to: PRQTELSQDNYKALREDRGGSWS*SLSCRA
Trigger: GGCTCTGCAGCTTAGGCTCAAGCTCCAGCTCCCGCC...CCTGTCCTCTCTGAGAGCCTTGTAGTTGTCCTGAGACAACTCTGTCTGCCTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS GCA 90 bp CCAAAAGCAAATAAATTCATGGGGTCTCGCTCTCCGCCTACGAGGTaGTTCACAGCTCCGTCTCTCAGCGAGACGGTCCGCACGGTGCTG +
Preference number: 5 (lower is better)
Translates to: PKANKFMGSRSPPTR*FTAPSLSETVRTVL
Trigger: CAGCACCGTGCGGACCGTCTCGCTGAGAGACGGAGCTGTGAAGCACCTCGTAGGCGGAGAGCGAGACCCCATGAATTTATTTGCTTTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS GCA 90 bp ATTGTAGGAGTCGGCCACGTAGAGCACTTGCCTCTCCTCGTCCCATaGAACCCCAAGTGGATGCTGAAGCTTCGCATTGATGCCTGCTCC +
Preference number: 5 (lower is better)
Translates to: IVGVGHVEHLPLLVP*NPKWMLKLRIDACS
Trigger: GGAGCAGGCATCAATGCGAAGCTTCAGCATCCACTTGGGGTTGCATGGGACGAGGAGAGGCAAGTGCTCTACGTGGCCGACTCCTACAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS GCA 90 bp GCGAGCTCTACAGGAGCTGCACAAGCTGGCTGGGTGCTGGTTATCTaGAAAGGCTGCCTGAACACGACTCCCTTCATCATACATGCGCTG +
Preference number: 5 (lower is better)
Translates to: ASSTGAAQAGWVLVI*KGCLNTTPFIIHAL
Trigger: CAGCGCATGTATGATGAAGGGAGTCGTGTTCAGGCAGCCTTTGCAGATAACCAGCACCCAGCCAGCTTGTGCAGCTCCTGTAGAGCTCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR CAA 90 bp CAACTACAAGGCTCTCAGAGAGGACAGGAGACGCTGCAGCTCCAGAAGTGCTGTCAACTCATCCTTCTCTaGCTGGGTGACGGCGTCCAG +
Preference number: 5 (lower is better)
Translates to: QLQGSQRGQETLQLQKCCQLILL*LGDGVQ
Trigger: CTGGACGCCGTCACCCAGCAAGAGAAGGATGAGTTG...ACAGCACTTCTGGAGCTGCAGCGTCTCCTGTCCTCTCTGAGAGCCTTGTAGTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS TCA 90 bp TCTGAGGCGAGAGCGAGGCCTGACGGCTGGGCAAAGCCTGCCTTGTaGGGATATGCGTTGTTTCGGTTCTCTTCATTTCCACTTCCAGCA +
Preference number: 5 (lower is better)
Translates to: SEARARPDGWAKPAL*GYALFRFSSFPLPA
Trigger: TGCTGGAAGTGGAAATGAAGAGAACCGAAACAACGCATATCCTCACAAGGCAGGCTTTGCCCAGCCGTCAGGCCTCGCTCTCGCCTCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS GCA 90 bp ACAGGAGCTGCACAAGCTGGCTGGGTGCTGGTTATCTGCAAAGGCTaGCTGAACACGACTCCCTTCATCATACATGCGCTGCTGTCTGCA +
Preference number: 5 (lower is better)
Translates to: TGAAQAGWVLVICKG*LNTTPFIIHALLSA
Trigger: TGCAGACAGCAGCGCATGTATGATGAAGGGAGTCGTGTTCAGGCAGCCTTTGCAGATAACCAGCACCCAGCCAGCTTGTGCAGCTCCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS CCA 90 bp ATCCTATGGTGCCCTGTGTCTGCCACCACAAGTCGACCAGTAGCATaGTCCACTGCTACTTTGCCAGGGAACAGCAATGGTGAAGGTGGC +
Preference number: 5 (lower is better)
Translates to: ILWCPVSATTSRPVA*STATLPGNSNGEGG
Trigger: GCCACCTTCACCATTGCTGTTCCCTGGCAAAGTAGCAGTGGACCATGCTACTGGTCGACTTGTGGTGGCAGACACAGGGCACCATAGGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR CAA 90 bp CCAAGGTTTCCTCCTGGCAGACACTGTGTCAGTCCTGACCCTAGGAAAGCGCACACAGGGTGGGTGATGTaGTATCTGAGGACAGCACTC +
Preference number: 5 (lower is better)
Translates to: PRFPPGRHCVSPDPRKAHTGWVM*YLRTAL
Trigger: GAGTGCTGTCCTCAGATACAACATCACCCACCCTGT...GTGCGCTTTCCTAGGGTCAGGACTGACACAGTGTCTGCCAGGAGGAAACCTTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS GCA 90 bp TCTCTATGTCTCCAGATGGGGTCTGTTCTTGAAGTAGCCATTCATTaGCTTCAGCTTCCAGGAACCAGCAGCTGGGCGCGCCTTCGGTCA +
Preference number: 5 (lower is better)
Translates to: SLCLQMGSVLEVAIH*LQLPGTSSWARLRS
Trigger: TGACCGAAGGCGCGCCCAGCTGCTGGTTCCTGGAAGCTGAAGGCAATGAATGGCTACTTCAAGAACAGACCCCATCTGGAGACATAGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS CCA 90 bp CAAAGAAAACAGCAGGTTTCCACGGGGTCCCAGTATGACCAGTGTTaGCCAGCAAGAGACTTCAAGCTCCTGCCAAAGGCTGGCATCTGC +
Preference number: 5 (lower is better)
Translates to: QRKQQVSTGSQYDQC*PARDFKLLPKAGIC
Trigger: GCAGATGCCAGCCTTTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAACACTGGTCATACTGGGACCCCGTGGAAACCTGCTGTTTTCTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR CAA 90 bp GCTGAGGGCGGAGGTCACGGGCTGAGTTGGGGCTCTGGCTTAGTTTTTGAGGGTCAGTCCCTGCTAACGTaGTACAGCCTTTTGTTTTTG +
Preference number: 5 (lower is better)
Translates to: AEGGGHGLSWGSGLVFEGQSLLT*YSLLFL
Trigger: CAAAAACAAAAGGCTGTACAACGTTAGCAGGGACTG...ACCCTCAAAAACTAAGCCAGAGCCCCAACTCAGCCCGTGACCTCCGCCCTCAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS TCA 90 bp CCTCTCCAATCAAAGAAAACAGCAGGTTTCCACGGGGTCCCAGTATaGCCAGTGTTGGCCAGCAAGAGACTTCAAGCTCCTGCCAAAGGC +
Preference number: 5 (lower is better)
Translates to: PLQSKKTAGFHGVPV*PVLASKRLQAPAKG
Trigger: GCCTTTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAACACTGGTCATACTGGGACCCCGTGGAAACCTGCTGTTTTCTTTGATTGGAGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS GCA 90 bp TGTTGGCCAGCAAGAGACTTCAAGCTCCTGCCAAAGGCTGGCATCTaGATCGTTAACCACAGGGTGGGTGATGTTGTATCTGAGGACAGC +
Preference number: 5 (lower is better)
Translates to: CWPARDFKLLPKAGI*IVNHRVGDVVSEDS
Trigger: GCTGTCCTCAGATACAACATCACCCACCCTGTGGTTAACGATGCAGATGCCAGCCTTTGGCAGGAGCTTGAAGTCTCTTGCTGGCCAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS CCA 90 bp TCAAGCTCCTGCCAAAGGCTGGCATCTGCATCGTTAACCACAGGGTaGGTGATGTTGTATCTGAGGACAGCACTCTTGATGTTGTCCAGG +
Preference number: 5 (lower is better)
Translates to: SSSCQRLASASLTTG*VMLYLRTALLMLSR
Trigger: CCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTGTGGTTAACGATGCAGATGCCAGCCTTTGGCAGGAGCTTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS TCA 90 bp AACATCCCATCTTTCCTTCCAGGGTTAGGTCCTCCAATGCTGCTCTaGATGCGCCCATTCTTCTGGATGACCAAGATCCTATGGTGCCCT +
Preference number: 5 (lower is better)
Translates to: NIPSFLPGLGPPMLL*MRPFFWMTKILWCP
Trigger: AGGGCACCATAGGATCTTGGTCATCCAGAAGAATGGGCGCATTCAGAGCAGCATTGGAGGACCTAACCCTGGAAGGAAAGATGGGATGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS GCA 90 bp AGGCTGCCTGAACACGACTCCCTTCATCATACATGCGCTGCTGTCTaGACTGCAGTAATAAAGAAACACGACGACAGACACCACAGCTTC +
Preference number: 5 (lower is better)
Translates to: RLPEHDSLHHTCAAV*TAVIKKHDDRHHSF
Trigger: GAAGCTGTGGTGTCTGTCGTCGTGTTTCTTTATTACTGCAGTGCAGACAGCAGCGCATGTATGATGAAGGGAGTCGTGTTCAGGCAGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR CAA 90 bp CCAAGGCAGACAGAGTTGTCTCAGGACAACTACAAGGCTCTCAGAGAGGACAGGACAGCACTCTTGATGTaGTCCAGGACCTTCTCATTG +
Preference number: 5 (lower is better)
Translates to: PRQTELSQDNYKALREDRTALLM*SRTFSL
Trigger: CAATGAGAAGGTCCTGGACAACATCAAGAGTGCTGT...CCTGTCCTCTCTGAGAGCCTTGTAGTTGTCCTGAGACAACTCTGTCTGCCTTGG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR CAA 90 bp CTAAACAGGACCCCTCCCTTTCACGTTCGCCTTGCTCCTGAGAAACAGCATTTCTTCTGTATCTGTCCCTaGAATACCGACACCAGCCAC +
Preference number: 5 (lower is better)
Translates to: LNRTPPFHVRLAPEKQHFFCICP*NTDTSH
Trigger: GTGGCTGGTGTCGGTATTCAAGGGACAGATACAGAA...GAAATGCTGTTTCTCAGGAGCAAGGCGAACGTGAAAGGGAGGGGTCCTGTTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR CAA 90 bp CCAAGGTTTCCTCCTGGCAGACACTGTGTCAGTCCTGACCCTAGGAAAGCGCACGGTGGCAGAGACTCTTaGAAGAGTTTTATTCCAATT +
Preference number: 5 (lower is better)
Translates to: PRFPPGRHCVSPDPRKAHGGRDS*KSFIPI
Trigger: AATTGGAATAAAACTCTTCAAAGAGTCTCTGCCACC...GTGCGCTTTCCTAGGGTCAGGACTGACACAGTGTCTGCCAGGAGGAAACCTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS GCA 90 bp GGTTATCTGCAAAGGCTGCCTGAACACGACTCCCTTCATCATACATaGGCTGCTGTCTGCACTGCAGTAATAAAGAAACACGACGACAGA +
Preference number: 5 (lower is better)
Translates to: GYLQRLPEHDSLHHT*AAVCTAVIKKHDDR
Trigger: TCTGTCGTCGTGTTTCTTTATTACTGCAGTGCAGACAGCAGCGCATGTATGATGAAGGGAGTCGTGTTCAGGCAGCCTTTGCAGATAACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR CAA 90 bp CAACTACAAGGCTCTCAGAGAGGACAGGAGACGCTGCAGCTCCAGAAGTGCTGTACGTTGTACAGCCTTTaGTTTTTGGATCCACAACTT +
Preference number: 5 (lower is better)
Translates to: QLQGSQRGQETLQLQKCCTLYSL*FLDPQL
Trigger: AAGTTGTGGATCCAAAAACAAAAGGCTGTACAACGT...ACAGCACTTCTGGAGCTGCAGCGTCTCCTGTCCTCTCTGAGAGCCTTGTAGTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS TCA 90 bp CTCTTGATGTTGTCCAGGACCTTCTCATTGGGAAACTTAGCCGAGTaGACACCGACAATCAGAAGGCCATCTTTATCAGAGAATCTGCGC +
Preference number: 5 (lower is better)
Translates to: LLMLSRTFSLGNLAE*TPTIRRPSLSENLR
Trigger: GCGCAGATTCTCTGATAAAGATGGCCTTCTGATTGTCGGTGTTCACTCGGCTAAGTTTCCCAATGAGAAGGTCCTGGACAACATCAAGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR CAA 90 bp CCAAGGCAGACAGAGTTGTCTCAGGACAACTACAAGGCTCTCAGAGAGGACAGGGCACAGAAACTGTTCTaGCTTCTAAATCCATCACTT +
Preference number: 5 (lower is better)
Translates to: PRQTELSQDNYKALREDRAQKLF*LLNPSL
Trigger: AAGTGATGGATTTAGAAGCAAGAACAGTTTCTGTGC...CCTGTCCTCTCTGAGAGCCTTGTAGTTGTCCTGAGACAACTCTGTCTGCCTTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS-3UTR CAA 90 bp TGGTCAGCTTTTGGTCAACTTGACACAAACTGGAGTCGTCTGAGAAGAGGGAACAGACTGACCTTTTCTTaGGCAGTGTGCCAGAGTCTA +
Preference number: 5 (lower is better)
Translates to: WSAFGQLDTNWSRLRRGNRLTFS*AVCQSL
Trigger: TAGACTCTGGCACACTGCCAAAGAAAAGGTCAGTCT...GTTCCCTCTTCTCAGACGACTCCAGTTTGTGTCAAGTTGACCAAAAGCTGACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236979.2
CDS TCA 90 bp CGTGGAGATCAGGCAGCACATGAATGCAGTTTATGCAGCAGTAGGTaGAGAAATCAAGGACAACCACTTTTCCACACAGGTCCTTGTAAA +
Preference number: 5 (lower is better)
Translates to: RGDQAAHECSLCSSR*RNQGQPLFHTGPCK
Trigger: TTTACAAGGACCTGTGTGGAAAAGTGGTTGTCCTTGATTTCTTCACCTACTGCTGCATAAACTGCATTCATGTGCTGCCTGATCTCCACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS TCA 90 bp ACCAGTAGCATGGTCCACTGCTACTTTGCCAGGGAACAGCAATGGTaGAGGTGGCAGAGACTCTTTGAAGAGTTTTATTCCAATTTTTCC +
Preference number: 5 (lower is better)
Translates to: TSSMVHCYFAREQQW*RWQRLFEEFYSNFS
Trigger: GGAAAAATTGGAATAAAACTCTTCAAAGAGTCTCTGCCACCTTCACCATTGCTGTTCCCTGGCAAAGTAGCAGTGGACCATGCTACTGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS TCA 90 bp AGCACAGAAACTGTTCTTGCTTCTAAATCCATCACTTTAATTTGGTaGTTATTAGTGTCTGCTACATATAACAGCCGACCACTCTCACCG +
Preference number: 5 (lower is better)
Translates to: STETVLASKSITLIW*LLVSATYNSRPLSP
Trigger: CGGTGAGAGTGGTCGGCTGTTATATGTAGCAGACACTAATAATCACCAAATTAAAGTGATGGATTTAGAAGCAAGAACAGTTTCTGTGCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS GCA 72 bp GTGACGGCGTCCAGCAGGGCGTACTCGAGCGAGGTCTaGGCGGGCAGCAGGCCCGAGAGGCTCGCGCCGCGC +
Preference number: 6 (lower is better)
Translates to: VTASSRAYSSEV*AGSRPERLAPR
Trigger: GCGCGGCGCGAGCCTCTCGGGCCTGCTGCCCGCGCAGACCTCGCTCGAGTACGCCCTGCTGGACGCCGTCAC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS CAA 90 bp CTGGGCGCGCCTTCGGTCAGCTTTGCTCCTGGCGGGAGCTGGAGCTaGAGCCTAAGCTGCAGAGCCTGGCCCGGATGCACCGTCACAGGG +
Preference number: 6 (lower is better)
Translates to: LGAPSVSFAPGGSWS*SLSCRAWPGCTVTG
Trigger: CCCTGTGACGGTGCATCCGGGCCAGGCTCTGCAGCTTAGGCTCAAGCTCCAGCTCCCGCCAGGAGCAAAGCTGACCGAAGGCGCGCCCAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS CCA 72 bp GGCGCGCCTTCGGTCAGCTTTGCTCCTGGCGGGAGCTaGAGCTTGAGCCTAAGCTGCAGAGCCTGGCCCGGA +
Preference number: 6 (lower is better)
Translates to: GAPSVSFAPGGS*SLSLSCRAWPG
Trigger: TCCGGGCCAGGCTCTGCAGCTTAGGCTCAAGCTCCAGCTCCCGCCAGGAGCAAAGCTGACCGAAGGCGCGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS CCA 72 bp CCAGCAGCTGGGCGCGCCTTCGGTCAGCTTTGCTCCTaGCGGGAGCTGGAGCTTGAGCCTAAGCTGCAGAGC +
Preference number: 6 (lower is better)
Translates to: PAAGRAFGQLCS*RELELEPKLQS
Trigger: GCTCTGCAGCTTAGGCTCAAGCTCCAGCTCCCGCCAGGAGCAAAGCTGACCGAAGGCGCGCCCAGCTGCTGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS TCA 72 bp AACCTGAGGTCCCAAGCGCAACGTCCCACGGGGAGCTaGTGGGCTGCTTGTCTCCCTCCTCGCCCCCTTCTG +
Preference number: 6 (lower is better)
Translates to: NLRSQAQRPTGS*WAACLPPRPLL
Trigger: CAGAAGGGGGCGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGGGACCTCAGGTT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071423.7
ENSMUST00000236979.2
CDS CAA 72 bp CCTTCGGTCAGCTTTGCTCCTGGCGGGAGCTGGAGCTaGAGCCTAAGCTGCAGAGCCTGGCCCGGATGCACC +
Preference number: 6 (lower is better)
Translates to: PSVSFAPGGSWS*SLSCRAWPGCT
Trigger: GGTGCATCCGGGCCAGGCTCTGCAGCTTAGGCTCAAGCTCCAGCTCCCGCCAGGAGCAAAGCTGACCGAAGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS GCA 72 bp GTCCCAAGCGCAACGTCCCACGGGGAGCTGATGGGCTaGTTGTCTCCCTCCTCGCCCCCTTCTGTATCTGTC +
Preference number: 6 (lower is better)
Translates to: VPSATSHGELMG*LSPSSPPSVSV
Trigger: GACAGATACAGAAGGGGGCGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGGGAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071423.7
ENSMUST00000236979.2
CDS GCA 72 bp CAGCTCCGTCTCTCAGCGAGACGGTCCGCACGGTGCTaGTCTCACTGTCAGCCACAAAGAGGCAGCTCCAGG +
Preference number: 6 (lower is better)
Translates to: QLRLSARRSARC*SHCQPQRGSSR
Trigger: CCTGGAGCTGCCTCTTTGTGGCTGACAGTGAGAGCAGCACCGTGCGGACCGTCTCGCTGAGAGACGGAGCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS CAA 72 bp CCAAGCGCAACGTCCCACGGGGAGCTGATGGGCTGCTaGTCTCCCTCCTCGCCCCCTTCTGTATCTGTCCCT +
Preference number: 6 (lower is better)
Translates to: PSATSHGELMGC*SPSSPPSVSVP
Trigger: AGGGACAGATACAGAAGGGGGCGAGGAGGGAGACAAGCAGCCCATCAGCTCCCCGTGGGACGTTGCGCTTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071423.7
ENSMUST00000236979.2
CDS GCA 72 bp TCACAGCTCCGTCTCTCAGCGAGACGGTCCGCACGGTaGTGCTCTCACTGTCAGCCACAAAGAGGCAGCTCC +
Preference number: 6 (lower is better)
Translates to: SQLRLSARRSAR*CSHCQPQRGSS
Trigger: GGAGCTGCCTCTTTGTGGCTGACAGTGAGAGCAGCACCGTGCGGACCGTCTCGCTGAGAGACGGAGCTGTGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS CAA 90 bp GCCGTCCACCTTCTGCAGATACTGGTAGACCAACTCATCCTTCTCTaGCTGGGTGACGGCGTCCAGCAGGGCGTACTCGAGCGAGGTCTG +
Preference number: 6 (lower is better)
Translates to: AVHLLQILVDQLILL*LGDGVQQGVLERGL
Trigger: CAGACCTCGCTCGAGTACGCCCTGCTGGACGCCGTCACCCAGCAAGAGAAGGATGAGTTGGTCTACCAGTATCTGCAGAAGGTGGACGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS TCA 72 bp GATACTGGTAGACCAACTCATCCTTCTCTTGCTGGGTaGCGGCGTCCAGCAGGGCGTACTCGAGCGAGGTCT +
Preference number: 6 (lower is better)
Translates to: DTGRPTHPSLAG*RRPAGRTRARS
Trigger: AGACCTCGCTCGAGTACGCCCTGCTGGACGCCGTCACCCAGCAAGAGAAGGATGAGTTGGTCTACCAGTATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS GCA 72 bp AATAAATTCATGGGGTCTCGCTCTCCGCCTACGAGGTaGTTCACAGCTCCGTCTCTCAGCGAGACGGTCCGC +
Preference number: 6 (lower is better)
Translates to: NKFMGSRSPPTR*FTAPSLSETVR
Trigger: GCGGACCGTCTCGCTGAGAGACGGAGCTGTGAAGCACCTCGTAGGCGGAGAGCGAGACCCCATGAATTTATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS GCA 72 bp GTCGGCCACGTAGAGCACTTGCCTCTCCTCGTCCCATaGAACCCCAAGTGGATGCTGAAGCTTCGCATTGAT +
Preference number: 6 (lower is better)
Translates to: VGHVEHLPLLVP*NPKWMLKLRID
Trigger: ATCAATGCGAAGCTTCAGCATCCACTTGGGGTTGCATGGGACGAGGAGAGGCAAGTGCTCTACGTGGCCGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS GCA 72 bp CTCCAGATGGGGTCTGTTCTTGAAGTAGCCATTCATTaGCTTCAGCTTCCAGGAACCAGCAGCTGGGCGCGC +
Preference number: 6 (lower is better)
Translates to: LQMGSVLEVAIH*LQLPGTSSWAR
Trigger: GCGCGCCCAGCTGCTGGTTCCTGGAAGCTGAAGGCAATGAATGGCTACTTCAAGAACAGACCCCATCTGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS CCA 72 bp GAGCACTTGCCTCTCCTCGTCCCATGCAACCCCAAGTaGATGCTGAAGCTTCGCATTGATGCCTGCTCCATC +
Preference number: 6 (lower is better)
Translates to: EHLPLLVPCNPK*MLKLRIDACSI
Trigger: GATGGAGCAGGCATCAATGCGAAGCTTCAGCATCCACTTGGGGTTGCATGGGACGAGGAGAGGCAAGTGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS CAA 72 bp CTTCTGCAGATACTGGTAGACCAACTCATCCTTCTCTaGCTGGGTGACGGCGTCCAGCAGGGCGTACTCGAG +
Preference number: 6 (lower is better)
Translates to: LLQILVDQLILL*LGDGVQQGVLE
Trigger: CTCGAGTACGCCCTGCTGGACGCCGTCACCCAGCAAGAGAAGGATGAGTTGGTCTACCAGTATCTGCAGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS CAA 72 bp CTTGTCTCCCTCCTCGCCCCCTTCTGTATCTGTCCCTaGAATACCGACACCAGCCACAGTGGTCACCTTCTC +
Preference number: 6 (lower is better)
Translates to: LVSLLAPFCICP*NTDTSHSGHLL
Trigger: GAGAAGGTGACCACTGTGGCTGGTGTCGGTATTCAAGGGACAGATACAGAAGGGGGCGAGGAGGGAGACAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071423.7
ENSMUST00000236979.2
CDS TCA 72 bp TTGTCTCCCTCCTCGCCCCCTTCTGTATCTGTCCCTTaGATACCGACACCAGCCACAGTGGTCACCTTCTCA +
Preference number: 6 (lower is better)
Translates to: LSPSSPPSVSVP*IPTPATVVTFS
Trigger: TGAGAAGGTGACCACTGTGGCTGGTGTCGGTATTCAAGGGACAGATACAGAAGGGGGCGAGGAGGGAGACAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071423.7
ENSMUST00000236979.2
CDS TCA 72 bp CTCACCGATACACAAGCCTCCGGGCTCATTAAAGGCTaGCTCCGCAAAACTGGAACTGGCATCACTGGCGTC +
Preference number: 6 (lower is better)
Translates to: LTDTQASGLIKG*LRKTGTGITGV
Trigger: GACGCCAGTGATGCCAGTTCCAGTTTTGCGGAGTCAGCCTTTAATGAGCCCGGAGGCTTGTGTATCGGTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS GCA 72 bp GCACAAGCTGGCTGGGTGCTGGTTATCTGCAAAGGCTaGCTGAACACGACTCCCTTCATCATACATGCGCTG +
Preference number: 6 (lower is better)
Translates to: AQAGWVLVICKG*LNTTPFIIHAL
Trigger: CAGCGCATGTATGATGAAGGGAGTCGTGTTCAGGCAGCCTTTGCAGATAACCAGCACCCAGCCAGCTTGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS CCA 72 bp TGCCCTGTGTCTGCCACCACAAGTCGACCAGTAGCATaGTCCACTGCTACTTTGCCAGGGAACAGCAATGGT +
Preference number: 6 (lower is better)
Translates to: CPVSATTSRPVA*STATLPGNSNG
Trigger: ACCATTGCTGTTCCCTGGCAAAGTAGCAGTGGACCATGCTACTGGTCGACTTGTGGTGGCAGACACAGGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS CCA 72 bp GTCCCTGCCATGGCTATCCACAGGATGTCATTTCTTTaGACCTCTGAACCTGAGGTCCCAAGCGCAACGTCC +
Preference number: 6 (lower is better)
Translates to: VPAMAIHRMSFL*TSEPEVPSATS
Trigger: GGACGTTGCGCTTGGGACCTCAGGTTCAGAGGTCCAAAGAAATGACATCCTGTGGATAGCCATGGCAGGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071423.7
ENSMUST00000236979.2
CDS TCA 72 bp AGAGCGAGGCCTGACGGCTGGGCAAAGCCTGCCTTGTaGGGATATGCGTTGTTTCGGTTCTCTTCATTTCCA +
Preference number: 6 (lower is better)
Translates to: RARPDGWAKPAL*GYALFRFSSFP
Trigger: TGGAAATGAAGAGAACCGAAACAACGCATATCCTCACAAGGCAGGCTTTGCCCAGCCGTCAGGCCTCGCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS TCA 72 bp TGCCTCTCCTCGTCCCATGCAACCCCAAGTGGATGCTaGAGCTTCGCATTGATGCCTGCTCCATCAACATCA +
Preference number: 6 (lower is better)
Translates to: CLSSSHATPSGC*SFALMPAPSTS
Trigger: TGATGTTGATGGAGCAGGCATCAATGCGAAGCTTCAGCATCCACTTGGGGTTGCATGGGACGAGGAGAGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS TCA 72 bp AAGCTGGCTGGGTGCTGGTTATCTGCAAAGGCTGCCTaGACACGACTCCCTTCATCATACATGCGCTGCTGT +
Preference number: 6 (lower is better)
Translates to: KLAGCWLSAKAA*TRLPSSYMRCC
Trigger: ACAGCAGCGCATGTATGATGAAGGGAGTCGTGTTCAGGCAGCCTTTGCAGATAACCAGCACCCAGCCAGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS GCA 72 bp ATGCGCCCATTCTTCTGGATGACCAAGATCCTATGGTaGCCTGTGTCTGCCACCACAAGTCGACCAGTAGCA +
Preference number: 6 (lower is better)
Translates to: MRPFFWMTKILW*PVSATTSRPVA
Trigger: TGCTACTGGTCGACTTGTGGTGGCAGACACAGGGCACCATAGGATCTTGGTCATCCAGAAGAATGGGCGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS GCA 72 bp ACAGGAGCTGCACAAGCTGGCTGGGTGCTGGTTATCTaGAAAGGCTGCCTGAACACGACTCCCTTCATCATA +
Preference number: 6 (lower is better)
Translates to: TGAAQAGWVLVI*KGCLNTTPFII
Trigger: TATGATGAAGGGAGTCGTGTTCAGGCAGCCTTTGCAGATAACCAGCACCCAGCCAGCTTGTGCAGCTCCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS CAA 72 bp AATCTTGTGATTGTAGGAGTCGGCCACGTAGAGCACTaGCCTCTCCTCGTCCCATGCAACCCCAAGTGGATG +
Preference number: 6 (lower is better)
Translates to: NLVIVGVGHVEH*PLLVPCNPKWM
Trigger: CATCCACTTGGGGTTGCATGGGACGAGGAGAGGCAAGTGCTCTACGTGGCCGACTCCTACAATCACAAGATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS CAA 90 bp TGCCAAAGGCTGGCATCTGCATCGTTAACCACAGGGTGGGTGATGTaGTATCTGAGGACAGCACTCTTGATGTTGTCCAGGACCTTCTCA +
Preference number: 6 (lower is better)
Translates to: CQRLASASLTTGWVM*YLRTALLMLSRTFS
Trigger: TGAGAAGGTCCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTGTGGTTAACGATGCAGATGCCAGCCTTTGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS CAA 90 bp CACAACTTTAATCTTGTGATTGTAGGAGTCGGCCACGTAGAGCACTaGCCTCTCCTCGTCCCATGCAACCCCAAGTGGATGCTGAAGCTT +
Preference number: 6 (lower is better)
Translates to: HNFNLVIVGVGHVEH*PLLVPCNPKWMLKL
Trigger: AAGCTTCAGCATCCACTTGGGGTTGCATGGGACGAGGAGAGGCAAGTGCTCTACGTGGCCGACTCCTACAATCACAAGATTAAAGTTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS TCA 72 bp TCAAAGAAAACAGCAGGTTTCCACGGGGTCCCAGTATaGCCAGTGTTGGCCAGCAAGAGACTTCAAGCTCCT +
Preference number: 6 (lower is better)
Translates to: SKKTAGFHGVPV*PVLASKRLQAP
Trigger: AGGAGCTTGAAGTCTCTTGCTGGCCAACACTGGTCATACTGGGACCCCGTGGAAACCTGCTGTTTTCTTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS CCA 72 bp TGCCAAAGGCTGGCATCTGCATCGTTAACCACAGGGTaGGTGATGTTGTATCTGAGGACAGCACTCTTGATG +
Preference number: 6 (lower is better)
Translates to: CQRLASASLTTG*VMLYLRTALLM
Trigger: CATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTGTGGTTAACGATGCAGATGCCAGCCTTTGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS CCA 72 bp CTAGGAGGAGTGCCCATATCTGATGAGTCCCTGCCATaGCTATCCACAGGATGTCATTTCTTTGGACCTCTG +
Preference number: 6 (lower is better)
Translates to: LGGVPISDESLP*LSTGCHFFGPL
Trigger: CAGAGGTCCAAAGAAATGACATCCTGTGGATAGCCATGGCAGGGACTCATCAGATATGGGCACTCCTCCTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071423.7
ENSMUST00000236979.2
CDS CAA 72 bp CTGGCATCTGCATCGTTAACCACAGGGTGGGTGATGTaGTATCTGAGGACAGCACTCTTGATGTTGTCCAGG +
Preference number: 6 (lower is better)
Translates to: LASASLTTGWVM*YLRTALLMLSR
Trigger: CCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTGTGGTTAACGATGCAGATGCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS CAA 72 bp CTAGGGAAGGAGCCATCTACCACAGCACTGTCAGACTaGCAGACTGGGAGCACAGAAACTGTTCTTGCTTCT +
Preference number: 6 (lower is better)
Translates to: LGKEPSTTALSD*QTGSTETVLAS
Trigger: AGAAGCAAGAACAGTTTCTGTGCTCCCAGTCTGCAAGTCTGACAGTGCTGTGGTAGATGGCTCCTTCCCTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS CCA 72 bp CAAGGACAACCACTTTTCCACACAGGTCCTTGTAAATaGACAGAGGCTCCTCCGTGTTCAGCCATTCTAAGC +
Preference number: 6 (lower is better)
Translates to: QGQPLFHTGPCK*TEAPPCSAILS
Trigger: GCTTAGAATGGCTGAACACGGAGGAGCCTCTGTCCATTTACAAGGACCTGTGTGGAAAAGTGGTTGTCCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS TCA 72 bp AAGCAATGGGTAGGAATCTGCAGGGAAATCGCCGGCTaGTTGGAAATATTCTCTATGTCTCCAGATGGGGTC +
Preference number: 6 (lower is better)
Translates to: KQWVGICREIAG*LEIFSMSPDGV
Trigger: GACCCCATCTGGAGACATAGAGAATATTTCCAATCAGCCGGCGATTTCCCTGCAGATTCCTACCCATTGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS GCA 72 bp GAACACGACTCCCTTCATCATACATGCGCTGCTGTCTaGACTGCAGTAATAAAGAAACACGACGACAGACAC +
Preference number: 6 (lower is better)
Translates to: EHDSLHHTCAAV*TAVIKKHDDRH
Trigger: GTGTCTGTCGTCGTGTTTCTTTATTACTGCAGTGCAGACAGCAGCGCATGTATGATGAAGGGAGTCGTGTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS GCA 72 bp CAAAGGCTGCCTGAACACGACTCCCTTCATCATACATaGGCTGCTGTCTGCACTGCAGTAATAAAGAAACAC +
Preference number: 6 (lower is better)
Translates to: QRLPEHDSLHHT*AAVCTAVIKKH
Trigger: GTGTTTCTTTATTACTGCAGTGCAGACAGCAGCGCATGTATGATGAAGGGAGTCGTGTTCAGGCAGCCTTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS GCA 72 bp GTGGTTCTCAGTGTCGGCCACATAGATGACATTATCTaGTATAGCTACACCCTCCAATGCTGCTCTGAATGC +
Preference number: 6 (lower is better)
Translates to: VVLSVGHIDDII*YSYTLQCCSEC
Trigger: GCATTCAGAGCAGCATTGGAGGGTGTAGCTATAGCAGATAATGTCATCTATGTGGCCGACACTGAGAACCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236979.2
CDS CAA 72 bp TGGGTGATGTTGTATCTGAGGACAGCACTCTTGATGTaGTCCAGGACCTTCTCATTGGGAAACTTAGCCGAG +
Preference number: 6 (lower is better)
Translates to: WVMLYLRTALLM*SRTFSLGNLAE
Trigger: CTCGGCTAAGTTTCCCAATGAGAAGGTCCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS TCA 72 bp TTGTCCAGGACCTTCTCATTGGGAAACTTAGCCGAGTaGACACCGACAATCAGAAGGCCATCTTTATCAGAG +
Preference number: 6 (lower is better)
Translates to: LSRTFSLGNLAE*TPTIRRPSLSE
Trigger: CTCTGATAAAGATGGCCTTCTGATTGTCGGTGTTCACTCGGCTAAGTTTCCCAATGAGAAGGTCCTGGACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS TCA 72 bp ATGGTCCACTGCTACTTTGCCAGGGAACAGCAATGGTaGAGGTGGCAGAGACTCTTTGAAGAGTTTTATTCC +
Preference number: 6 (lower is better)
Translates to: MVHCYFAREQQW*RWQRLFEEFYS
Trigger: GGAATAAAACTCTTCAAAGAGTCTCTGCCACCTTCACCATTGCTGTTCCCTGGCAAAGTAGCAGTGGACCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS CAA 72 bp ACAGGGTGGGTGATGTTGTATCTGAGGACAGCACTCTaGATGTTGTCCAGGACCTTCTCATTGGGAAACTTA +
Preference number: 6 (lower is better)
Translates to: TGWVMLYLRTAL*MLSRTFSLGNL
Trigger: TAAGTTTCCCAATGAGAAGGTCCTGGACAACATCAAGAGTGCTGTCCTCAGATACAACATCACCCACCCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7
CDS TCA 72 bp GAAATATTCTCTATGTCTCCAGATGGGGTCTGTTCTTaGAGTAGCCATTCATTGCCTTCAGCTTCCAGGAAC +
Preference number: 6 (lower is better)
Translates to: EIFSMSPDGVCS*SSHSLPSASRN
Trigger: GTTCCTGGAAGCTGAAGGCAATGAATGGCTACTTCAAGAACAGACCCCATCTGGAGACATAGAGAATATTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071423.7