Pregenerated sensors for NHLH2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048540Ensembl transcript IDs: ENSMUST00000066187.6, ENSMUST00000196324.2, ENSMUST00000198675.2
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTCCAACTCTCAGGTGCTGGGTTGATGGATGTAGGGGCCACTCCCTaGTCTTCCCTGCCACTGGATGCAGACACCTCCTTAGCCCCGAGT | + |
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Preference number: 1 (lower is better) Translates to: LQLSGAGLMDVGATP*SSLPLDADTSLAPS Trigger: ACTCGGGGCTAAGGAGGTGTCTGCATCCAGTGGCAGGGAAGATCAGGGAGTGGCCCCTACATCCATCAACCCAGCACCTGAGAGTTGGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066187.6 |
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| 3UTR GCA 90 bp | ATAGATGACCTTAAGCCTCTGGTTCTCCCATCTCCAACTCTCAGGTaGTGGGTTGATGGATGTAGGGGCCACTCCCTGATCTTCCCTGCC | + |
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Preference number: 1 (lower is better) Translates to: IDDLKPLVLPSPTLR*WVDGCRGHSLIFPA Trigger: GGCAGGGAAGATCAGGGAGTGGCCCCTACATCCATCAACCCAGCACCTGAGAGTTGGAGATGGGAGAACCAGAGGCTTAAGGTCATCTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066187.6 |
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| 3UTR GCA 90 bp | AAGGCATCTTATGATCCCTGTACTGCTCTTATGGACACATCTCCCTaGTTTTCCTCATGGACGAGACCTGATCTATACCATCCCAGGCTG | + |
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Preference number: 1 (lower is better) Translates to: KASYDPCTALMDTSP*FSSWTRPDLYHPRL Trigger: CAGCCTGGGATGGTATAGATCAGGTCTCGTCCATGAGGAAAAGCAGGGAGATGTGTCCATAAGAGCAGTACAGGGATCATAAGATGCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066187.6 |
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| 3UTR GCA 90 bp | GCTGAGCGTGGGTACCAATTAGATGTTTCAGTGACACATGCTTTGTaGTTAAGTGCCCAGAGGGAAAGCTGTCAAAAAGGGTCTGTTCAC | + |
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Preference number: 1 (lower is better) Translates to: AERGYQLDVSVTHAL*LSAQRESCQKGSVH Trigger: GTGAACAGACCCTTTTTGACAGCTTTCCCTCTGGGCACTTAAGCACAAAGCATGTGTCACTGAAACATCTAATTGGTACCCACGCTCAGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066187.6 |
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| 3UTR CCA 90 bp | TCAGTTAGAAAAATCCCAGATAGTCATAGTTTGAAGCCATCAGCCTaGGCTAAGCTGTCCTCATTCTTTCAGAACGTGAAGGTGTGTAGG | + |
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Preference number: 1 (lower is better) Translates to: SVRKIPDSHSLKPSA*AKLSSFFQNVKVCR Trigger: CCTACACACCTTCACGTTCTGAAAGAATGAGGACAGCTTAGCCCAGGCTGATGGCTTCAAACTATGACTATCTGGGATTTTTCTAACTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| 3UTR TCA 90 bp | GGTTTGGTGATTTGTCAGTTAGAAAAATCCCAGATAGTCATAGTTTaGAGCCATCAGCCTGGGCTAAGCTGTCCTCATTCTTTCAGAACG | + |
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Preference number: 1 (lower is better) Translates to: GLVICQLEKSQIVIV*SHQPGLSCPHSFRT Trigger: CGTTCTGAAAGAATGAGGACAGCTTAGCCCAGGCTGATGGCTTCAAACTATGACTATCTGGGATTTTTCTAACTGACAAATCACCAAACC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| 3UTR TCA 90 bp | CATGGGTTCTGCTTATACAGTATGCCAGACCCAGGTTTGTGCAGATaGGTGTTCCTGATAAAAAGTTGTTTTAAGGCAAGTGTGTCATGG | + |
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Preference number: 1 (lower is better) Translates to: HGFCLYSMPDPGLCR*VFLIKSCFKASVSW Trigger: CCATGACACACTTGCCTTAAAACAACTTTTTATCAGGAACACTCATCTGCACAAACCTGGGTCTGGCATACTGTATAAGCAGAACCCATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066187.6 |
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| 3UTR TCA 90 bp | GTGTTCCTGATAAAAAGTTGTTTTAAGGCAAGTGTGTCATGGTGCTaGGCGTGGGTACCAATTAGATGTTTCAGTGACACATGCTTTGTG | + |
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Preference number: 1 (lower is better) Translates to: VFLIKSCFKASVSWC*AWVPIRCFSDTCFV Trigger: CACAAAGCATGTGTCACTGAAACATCTAATTGGTACCCACGCTCAGCACCATGACACACTTGCCTTAAAACAACTTTTTATCAGGAACAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066187.6 |
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| 3UTR-3UTR TCA 90 bp | AGTGACACATGCTTTGTGCTTAAGTGCCCAGAGGGAAAGCTGTCAAAAAGGGTCGTAGGGGCCACTCCCTaGTCTTCCCTGCCACTGGAT | + |
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Preference number: 2 (lower is better) Translates to: SDTCFVLKCPEGKLSKRVVGATP*SSLPLD Trigger: ATCCAGTGGCAGGGAAGATCAGGGAGTGGCCCCTAC...GACCCTTTTTGACAGCTTTCCCTCTGGGCACTTAAGCACAAAGCATGTGTCACT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066187.6 |
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| 3UTR-3UTR CCA 90 bp | AGTGACACATGCTTTGTGCTTAAGTGCCCAGAGGGAAAGCTGTCAAAAAGGGTCCCAACTCTCAGGTGCTaGGTTGATGGATGTAGGGGC | + |
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Preference number: 2 (lower is better) Translates to: SDTCFVLKCPEGKLSKRVPTLRC*VDGCRG Trigger: GCCCCTACATCCATCAACCCAGCACCTGAGAGTTGG...GACCCTTTTTGACAGCTTTCCCTCTGGGCACTTAAGCACAAAGCATGTGTCACT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066187.6 |
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| 3UTR-3UTR GCA 90 bp | TTTCTACCCAACCCCACCTCCCAGGCTGGGAAATCTTCTCCTGTTGCCTTGATGCTAGAAAGAACAGGCTaGAAAGCTTTCTCCTGCGTT | + |
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Preference number: 2 (lower is better) Translates to: FLPNPTSQAGKSSPVALMLERTG*KAFSCV Trigger: AACGCAGGAGAAAGCTTTGCAGCCTGTTCTTTCTAG...CATCAAGGCAACAGGAGAAGATTTCCCAGCCTGGGAGGTGGGGTTGGGTAGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| 3UTR CAA 90 bp | GGTGCTGAGCGTGGGTACCAATTAGATGTTTCAGTGACACATGCTTaGTGCTTAAGTGCCCAGAGGGAAAGCTGTCAAAAAGGGTCTGTT | + |
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Preference number: 2 (lower is better) Translates to: GAERGYQLDVSVTHA*CLSAQRESCQKGSV Trigger: AACAGACCCTTTTTGACAGCTTTCCCTCTGGGCACTTAAGCACAAAGCATGTGTCACTGAAACATCTAATTGGTACCCACGCTCAGCACC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066187.6 |
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| 3UTR-3UTR GCA 90 bp | ACACATGCTTTGTGCTTAAGTGCCCAGAGGGAAAGCTGTCAAAAAGGGTCTGTTTCTCCAACTCTCAGGTaGTGGGTTGATGGATGTAGG | + |
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Preference number: 2 (lower is better) Translates to: THALCLSAQRESCQKGSVSPTLR*WVDGCR Trigger: CCTACATCCATCAACCCAGCACCTGAGAGTTGGAGA...AACAGACCCTTTTTGACAGCTTTCCCTCTGGGCACTTAAGCACAAAGCATGTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066187.6 |
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| 3UTR-3UTR GCA 90 bp | ACACATGCTTTGTGCTTAAGTGCCCAGAGGGAAAGCTGTCAAAAAGGGTCTGTTACCAAGCTCAAATCCTaGCACAGTGTATGTCTGTCT | + |
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Preference number: 2 (lower is better) Translates to: THALCLSAQRESCQKGSVTKLKS*HSVCLS Trigger: AGACAGACATACACTGTGGCAGGATTTGAGCTTGGT...AACAGACCCTTTTTGACAGCTTTCCCTCTGGGCACTTAAGCACAAAGCATGTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066187.6 |
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| 3UTR-3UTR CCA 90 bp | TTTGGTGATTTGTCAGTTAGAAAAATCCCAGATAGTCATAGTTTGAAGCCATCACCCCACCTCCCAGGCTaGGAAATCTTCTCCTGTTGC | + |
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Preference number: 2 (lower is better) Translates to: FGDLSVRKIPDSHSLKPSPHLPG*EIFSCC Trigger: GCAACAGGAGAAGATTTCCCAGCCTGGGAGGTGGGG...TGATGGCTTCAAACTATGACTATCTGGGATTTTTCTAACTGACAAATCACCAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| 3UTR-3UTR CCA 90 bp | TCACGCACACACACAAAGGAGCTACTCTCCTTAAAAACAGTAAAGTACTTTTCATTGAAGCCATCAGCCTaGGCTAAGCTGTCCTCATTC | + |
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Preference number: 2 (lower is better) Translates to: SRTHTKELLSLKTVKYFSLKPSA*AKLSSF Trigger: GAATGAGGACAGCTTAGCCCAGGCTGATGGCTTCAA...TGAAAAGTACTTTACTGTTTTTAAGGAGAGTAGCTCCTTTGTGTGTGTGCGTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| 3UTR CAA 90 bp | AGGTTTGGTGATTTGTCAGTTAGAAAAATCCCAGATAGTCATAGTTaGAAGCCATCAGCCTGGGCTAAGCTGTCCTCATTCTTTCAGAAC | + |
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Preference number: 2 (lower is better) Translates to: RFGDLSVRKIPDSHS*KPSAWAKLSSFFQN Trigger: GTTCTGAAAGAATGAGGACAGCTTAGCCCAGGCTGATGGCTTCAAACTATGACTATCTGGGATTTTTCTAACTGACAAATCACCAAACCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| 3UTR-3UTR TCA 90 bp | TTGTCAGTTAGAAAAATCCCAGATAGTCATAGTTTGAAGCCATCAGCCTGGGCTAGAAATACAGGGAAATaGAAAGCCTCCAGTAGCTTA | + |
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Preference number: 2 (lower is better) Translates to: LSVRKIPDSHSLKPSAWARNTGK*KASSSL Trigger: TAAGCTACTGGAGGCTTTTCATTTCCCTGTATTTCT...AGCCCAGGCTGATGGCTTCAAACTATGACTATCTGGGATTTTTCTAACTGACAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| 3UTR TCA 72 bp | TCAGGTGCTGGGTTGATGGATGTAGGGGCCACTCCCTaGTCTTCCCTGCCACTGGATGCAGACACCTCCTTA | + |
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Preference number: 3 (lower is better) Translates to: SGAGLMDVGATP*SSLPLDADTSL Trigger: TAAGGAGGTGTCTGCATCCAGTGGCAGGGAAGATCAGGGAGTGGCCCCTACATCCATCAACCCAGCACCTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066187.6 |
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| 3UTR GCA 72 bp | CTTAAGCCTCTGGTTCTCCCATCTCCAACTCTCAGGTaGTGGGTTGATGGATGTAGGGGCCACTCCCTGATC | + |
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Preference number: 3 (lower is better) Translates to: LKPLVLPSPTLR*WVDGCRGHSLI Trigger: GATCAGGGAGTGGCCCCTACATCCATCAACCCAGCACCTGAGAGTTGGAGATGGGAGAACCAGAGGCTTAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066187.6 |
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| 3UTR CCA 72 bp | AAGCCTCTGGTTCTCCCATCTCCAACTCTCAGGTGCTaGGTTGATGGATGTAGGGGCCACTCCCTGATCTTC | + |
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Preference number: 3 (lower is better) Translates to: KPLVLPSPTLRC*VDGCRGHSLIF Trigger: GAAGATCAGGGAGTGGCCCCTACATCCATCAACCCAGCACCTGAGAGTTGGAGATGGGAGAACCAGAGGCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066187.6 |
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| 3UTR CCA 72 bp | ACTGCTCTTATGGACACATCTCCCTGCTTTTCCTCATaGACGAGACCTGATCTATACCATCCCAGGCTGGGC | + |
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Preference number: 3 (lower is better) Translates to: TALMDTSPCFSS*TRPDLYHPRLG Trigger: GCCCAGCCTGGGATGGTATAGATCAGGTCTCGTCCATGAGGAAAAGCAGGGAGATGTGTCCATAAGAGCAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066187.6 |
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| 3UTR-3UTR CAA 90 bp | AGTGACACATGCTTTGTGCTTAAGTGCCCAGAGGGAAAGCTGTCAAAAAGGGTCATTATTTCACGGGGGTaGGGAGGGAGTGTAAACACT | + |
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Preference number: 3 (lower is better) Translates to: SDTCFVLKCPEGKLSKRVIISRG*GGSVNT Trigger: AGTGTTTACACTCCCTCCCAACCCCCGTGAAATAAT...GACCCTTTTTGACAGCTTTCCCTCTGGGCACTTAAGCACAAAGCATGTGTCACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000066187.6 |
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| 3UTR GCA 72 bp | TATGATCCCTGTACTGCTCTTATGGACACATCTCCCTaGTTTTCCTCATGGACGAGACCTGATCTATACCAT | + |
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Preference number: 3 (lower is better) Translates to: YDPCTALMDTSP*FSSWTRPDLYH Trigger: ATGGTATAGATCAGGTCTCGTCCATGAGGAAAAGCAGGGAGATGTGTCCATAAGAGCAGTACAGGGATCATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066187.6 |
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| 3UTR GCA 72 bp | GGGTACCAATTAGATGTTTCAGTGACACATGCTTTGTaGTTAAGTGCCCAGAGGGAAAGCTGTCAAAAAGGG | + |
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Preference number: 3 (lower is better) Translates to: GYQLDVSVTHAL*LSAQRESCQKG Trigger: CCCTTTTTGACAGCTTTCCCTCTGGGCACTTAAGCACAAAGCATGTGTCACTGAAACATCTAATTGGTACCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066187.6 |
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| 3UTR TCA 72 bp | TCGTGTTTTTGCTTAACTAACTCCTTTCTAAAGAACTaGGTCCCTTATGACATTTCACGCCTGGCCAGGATG | + |
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Preference number: 3 (lower is better) Translates to: SCFCLTNSFLKN*VPYDISRLARM Trigger: CATCCTGGCCAGGCGTGAAATGTCATAAGGGACTCAGTTCTTTAGAAAGGAGTTAGTTAAGCAAAAACACGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066187.6 |
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| 3UTR-3UTR CAA 90 bp | TCACGCACACACACAAAGGAGCTACTCTCCTTAAAAACAGTAAAGTACTTTTCAATTATTTCACGGGGGTaGGGAGGGAGTGTAAACACT | + |
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Preference number: 3 (lower is better) Translates to: SRTHTKELLSLKTVKYFSIISRG*GGSVNT Trigger: AGTGTTTACACTCCCTCCCAACCCCCGTGAAATAAT...TGAAAAGTACTTTACTGTTTTTAAGGAGAGTAGCTCCTTTGTGTGTGTGCGTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| 3UTR TCA 72 bp | ATTTGTCAGTTAGAAAAATCCCAGATAGTCATAGTTTaGAGCCATCAGCCTGGGCTAAGCTGTCCTCATTCT | + |
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Preference number: 3 (lower is better) Translates to: ICQLEKSQIVIV*SHQPGLSCPHS Trigger: AGAATGAGGACAGCTTAGCCCAGGCTGATGGCTTCAAACTATGACTATCTGGGATTTTTCTAACTGACAAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| 3UTR CCA 72 bp | CCTCATGGACGAGACCTGATCTATACCATCCCAGGCTaGGCTGCATACGAATTTTATATGTGTATAAAATTT | + |
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Preference number: 3 (lower is better) Translates to: PHGRDLIYTIPG*AAYEFYMCIKF Trigger: AAATTTTATACACATATAAAATTCGTATGCAGCCCAGCCTGGGATGGTATAGATCAGGTCTCGTCCATGAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066187.6 |
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| 3UTR TCA 72 bp | ATAAAAAGTTGTTTTAAGGCAAGTGTGTCATGGTGCTaGGCGTGGGTACCAATTAGATGTTTCAGTGACACA | + |
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Preference number: 3 (lower is better) Translates to: IKSCFKASVSWC*AWVPIRCFSDT Trigger: TGTGTCACTGAAACATCTAATTGGTACCCACGCTCAGCACCATGACACACTTGCCTTAAAACAACTTTTTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066187.6 |
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| 3UTR TCA 72 bp | TGCTTATACAGTATGCCAGACCCAGGTTTGTGCAGATaGGTGTTCCTGATAAAAAGTTGTTTTAAGGCAAGT | + |
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Preference number: 3 (lower is better) Translates to: CLYSMPDPGLCR*VFLIKSCFKAS Trigger: ACTTGCCTTAAAACAACTTTTTATCAGGAACACTCATCTGCACAAACCTGGGTCTGGCATACTGTATAAGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066187.6 |
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| 3UTR CCA 72 bp | GTATGTACATACAGGAATACAGTTACAAGTTATTCATaGGTTCTGCTTATACAGTATGCCAGACCCAGGTTT | + |
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Preference number: 3 (lower is better) Translates to: VCTYRNTVTSYS*VLLIQYARPRF Trigger: AAACCTGGGTCTGGCATACTGTATAAGCAGAACCCATGAATAACTTGTAACTGTATTCCTGTATGTACATAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066187.6 |
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| CDS-3UTR GCA 90 bp | AGGCTGCAAAGCTTTCTCCTGCGTTCAAGTGTCTCTGGGCAAACCTCTAGCCTGAGAGCGCGGCCCGGCTaGCTCCCTTGCCGTCGCCGT | + |
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Preference number: 4 (lower is better) Translates to: RLQSFLLRSSVSGQTSSLRARPG*LPCRRR Trigger: ACGGCGACGGCAAGGGAGGCAGCCGGGCCGCGCTCT...CAGGCTAGAGGTTTGCCCAGAGACACTTGAACGCAGGAGAAAGCTTTGCAGCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS-3UTR GCA 90 bp | AACCCCACCTCCCAGGCTGGGAAATCTTCTCCTGTTGCCTTGATGACTAGAAAGAGAGCGCGGCCCGGCTaGCTCCCTTGCCGTCGCCGT | + |
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Preference number: 4 (lower is better) Translates to: NPTSQAGKSSPVALMTRKRARPG*LPCRRR Trigger: ACGGCGACGGCAAGGGAGGCAGCCGGGCCGCGCTCT...CTTTCTAGTCATCAAGGCAACAGGAGAAGATTTCCCAGCCTGGGAGGTGGGGTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS-3UTR TCA 90 bp | TCTCCAACTCTCAGGTGCTGGGTTGATGGATGTAGGGGCCACTCCCTGATCTTCTGCGTCGAGCTGGGGTaGTCTGAGTCGGCGGCTTGG | + |
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Preference number: 4 (lower is better) Translates to: SPTLRCWVDGCRGHSLIFCVELG*SESAAW Trigger: CCAAGCCGCCGACTCAGATCACCCCAGCTCGACGCA...GAAGATCAGGGAGTGGCCCCTACATCCATCAACCCAGCACCTGAGAGTTGGAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066187.6 |
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| CDS-3UTR GCA 90 bp | AGGCTGCAAAGCTTTCTCCTGCGTTCAAGTGTCTCTGGGCAAACCTCTAGCCTGAAGCCTCCACTCGGATaGGCTCGCGGGTGGCGTGGG | + |
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Preference number: 4 (lower is better) Translates to: RLQSFLLRSSVSGQTSSLKPPLG*ARGWRG Trigger: CCCACGCCACCCGCGAGCGCATCCGAGTGGAGGCTT...CAGGCTAGAGGTTTGCCCAGAGACACTTGAACGCAGGAGAAAGCTTTGCAGCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS-3UTR GCA 90 bp | TCTCCAACTCTCAGGTGCTGGGTTGATGGATGTAGGGGCCACTCCCTGATCTTCCAGAACCTTGGTGTCTaGGCCGCCCAGAGACTCCGG | + |
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Preference number: 4 (lower is better) Translates to: SPTLRCWVDGCRGHSLIFQNLGV*AAQRLR Trigger: CCGGAGTCTCTGGGCGGCGCAGACACCAAGGTTCTG...GAAGATCAGGGAGTGGCCCCTACATCCATCAACCCAGCACCTGAGAGTTGGAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066187.6 |
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| CDS-3UTR CCA 90 bp | AACCCCACCTCCCAGGCTGGGAAATCTTCTCCTGTTGCCTTGATGACTAGAAAGGGATGCGCTCGCGGGTaGCGTGGGCCGATCGGTACT | + |
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Preference number: 4 (lower is better) Translates to: NPTSQAGKSSPVALMTRKGCARG*RGPIGT Trigger: AGTACCGATCGGCCCACGCCACCCGCGAGCGCATCC...CTTTCTAGTCATCAAGGCAACAGGAGAAGATTTCCCAGCCTGGGAGGTGGGGTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS-3UTR TCA 90 bp | AACCCCACCTCCCAGGCTGGGAAATCTTCTCCTGTTGCCTTGATGACTAGAAAGTGCGTCGAGCTGGGGTaGTCTGAGTCGGCGGCTTGG | + |
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Preference number: 4 (lower is better) Translates to: NPTSQAGKSSPVALMTRKCVELG*SESAAW Trigger: CCAAGCCGCCGACTCAGATCACCCCAGCTCGACGCA...CTTTCTAGTCATCAAGGCAACAGGAGAAGATTTCCCAGCCTGGGAGGTGGGGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS-3UTR TCA 90 bp | AGGGCATCTCATTCTAGGTGCCTCCAGAAGGATTTTCTGGCCAGGAAAATCCCCTGCGTCGAGCTGGGGTaGTCTGAGTCGGCGGCTTGG | + |
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Preference number: 4 (lower is better) Translates to: RASHSRCLQKDFLARKIPCVELG*SESAAW Trigger: CCAAGCCGCCGACTCAGATCACCCCAGCTCGACGCA...GGGGATTTTCCTGGCCAGAAAATCCTTCTGGAGGCACCTAGAATGAGATGCCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS-3UTR GCA 90 bp | CCTGTTGCCTTGATGACTAGAAAGAACAGGCTGCAAAGCTTTCTCCTGCGTTCAAAGCCTCCACTCGGATaGGCTCGCGGGTGGCGTGGG | + |
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Preference number: 4 (lower is better) Translates to: PVALMTRKNRLQSFLLRSKPPLG*ARGWRG Trigger: CCCACGCCACCCGCGAGCGCATCCGAGTGGAGGCTT...TGAACGCAGGAGAAAGCTTTGCAGCCTGTTCTTTCTAGTCATCAAGGCAACAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS-3UTR CCA 90 bp | CCTGTTGCCTTGATGACTAGAAAGAACAGGCTGCAAAGCTTTCTCCTGCGTTCAGGATGCGCTCGCGGGTaGCGTGGGCCGATCGGTACT | + |
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Preference number: 4 (lower is better) Translates to: PVALMTRKNRLQSFLLRSGCARG*RGPIGT Trigger: AGTACCGATCGGCCCACGCCACCCGCGAGCGCATCC...TGAACGCAGGAGAAAGCTTTGCAGCCTGTTCTTTCTAGTCATCAAGGCAACAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS-3UTR GCA 90 bp | TTTCTACCCAACCCCACCTCCCAGGCTGGGAAATCTTCTCCTGTTGCCTTGATGCTAGGTCCGACACGCTaGCCAGAACCTTGGTGTCTG | + |
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Preference number: 4 (lower is better) Translates to: FLPNPTSQAGKSSPVALMLGPTR*PEPWCL Trigger: CAGACACCAAGGTTCTGGGCAGCGTGTCGGACCTAG...CATCAAGGCAACAGGAGAAGATTTCCCAGCCTGGGAGGTGGGGTTGGGTAGAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS-3UTR GCA 90 bp | AACCCCACCTCCCAGGCTGGGAAATCTTCTCCTGTTGCCTTGATGACTAGAAAGGCGTGGGTAGTAGTTTaGGGAGCTCGGCGAAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: NPTSQAGKSSPVALMTRKAWVVV*GARRRP Trigger: TGGCCTTCGCCGAGCTCCGCAAACTACTACCCACGC...CTTTCTAGTCATCAAGGCAACAGGAGAAGATTTCCCAGCCTGGGAGGTGGGGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS-3UTR GCA 90 bp | CCTGTTGCCTTGATGACTAGAAAGAACAGGCTGCAAAGCTTTCTCCTGCGTTCAGCGTGGGTAGTAGTTTaGGGAGCTCGGCGAAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: PVALMTRKNRLQSFLLRSAWVVV*GARRRP Trigger: TGGCCTTCGCCGAGCTCCGCAAACTACTACCCACGC...TGAACGCAGGAGAAAGCTTTGCAGCCTGTTCTTTCTAGTCATCAAGGCAACAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| 3UTR CAA 72 bp | AGCTGTCAAAAAGGGTCTGTTCACTGCCTTTTTCTTTaGGGCAGGGTCTCACGTAGCCCAGGCTGGCCTCAA | + |
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Preference number: 4 (lower is better) Translates to: SCQKGSVHCLFL*GRVSRSPGWPQ Trigger: TTGAGGCCAGCCTGGGCTACGTGAGACCCTGCCCAAAAGAAAAAGGCAGTGAACAGACCCTTTTTGACAGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000066187.6 |
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| CDS-3UTR TCA 90 bp | AGGCTGCAAAGCTTTCTCCTGCGTTCAAGTGTCTCTGGGCAAACCTCTAGCCTGCGTCCAGGACATGGTTaGGATAGGAGATGTAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: RLQSFLLRSSVSGQTSSLRPGHG*DRRCSR Trigger: TCTGCTACATCTCCTATCTCAACCATGTCCTGGACG...CAGGCTAGAGGTTTGCCCAGAGACACTTGAACGCAGGAGAAAGCTTTGCAGCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS-3UTR GCA 90 bp | TTGTCAGTTAGAAAAATCCCAGATAGTCATAGTTTGAAGCCATCAGCCTGGGCTCAGAACCTTGGTGTCTaGGCCGCCCAGAGACTCCGG | + |
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Preference number: 4 (lower is better) Translates to: LSVRKIPDSHSLKPSAWAQNLGV*AAQRLR Trigger: CCGGAGTCTCTGGGCGGCGCAGACACCAAGGTTCTG...AGCCCAGGCTGATGGCTTCAAACTATGACTATCTGGGATTTTTCTAACTGACAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS-3UTR GCA 90 bp | TTTGGTGATTTGTCAGTTAGAAAAATCCCAGATAGTCATAGTTTGAAGCCATCAAGAGCGCGGCCCGGCTaGCTCCCTTGCCGTCGCCGT | + |
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Preference number: 4 (lower is better) Translates to: FGDLSVRKIPDSHSLKPSRARPG*LPCRRR Trigger: ACGGCGACGGCAAGGGAGGCAGCCGGGCCGCGCTCT...TGATGGCTTCAAACTATGACTATCTGGGATTTTTCTAACTGACAAATCACCAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| 3UTR CAA 72 bp | CCCACCTCCCAGGCTGGGAAATCTTCTCCTGTTGCCTaGATGACTAGAAAGAACAGGCTGCAAAGCTTTCTC | + |
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Preference number: 4 (lower is better) Translates to: PTSQAGKSSPVA*MTRKNRLQSFL Trigger: GAGAAAGCTTTGCAGCCTGTTCTTTCTAGTCATCAAGGCAACAGGAGAAGATTTCCCAGCCTGGGAGGTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS-3UTR CCA 90 bp | TTTGGTGATTTGTCAGTTAGAAAAATCCCAGATAGTCATAGTTTGAAGCCATCAGGATGCGCTCGCGGGTaGCGTGGGCCGATCGGTACT | + |
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Preference number: 4 (lower is better) Translates to: FGDLSVRKIPDSHSLKPSGCARG*RGPIGT Trigger: AGTACCGATCGGCCCACGCCACCCGCGAGCGCATCC...TGATGGCTTCAAACTATGACTATCTGGGATTTTTCTAACTGACAAATCACCAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS-3UTR GCA 90 bp | TCACGCACACACACAAAGGAGCTACTCTCCTTAAAAACAGTAAAGTACTTTTCAGCGTGGGTAGTAGTTTaGGGAGCTCGGCGAAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: SRTHTKELLSLKTVKYFSAWVVV*GARRRP Trigger: TGGCCTTCGCCGAGCTCCGCAAACTACTACCCACGC...TGAAAAGTACTTTACTGTTTTTAAGGAGAGTAGCTCCTTTGTGTGTGTGCGTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS-3UTR GCA 90 bp | TTTGGTGATTTGTCAGTTAGAAAAATCCCAGATAGTCATAGTTTGAAGCCATCACAGAACCTTGGTGTCTaGGCCGCCCAGAGACTCCGG | + |
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Preference number: 4 (lower is better) Translates to: FGDLSVRKIPDSHSLKPSQNLGV*AAQRLR Trigger: CCGGAGTCTCTGGGCGGCGCAGACACCAAGGTTCTG...TGATGGCTTCAAACTATGACTATCTGGGATTTTTCTAACTGACAAATCACCAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS-3UTR GCA 90 bp | TCACGCACACACACAAAGGAGCTACTCTCCTTAAAAACAGTAAAGTACTTTTCACTAGGTCCGACACGCTaGCCAGAACCTTGGTGTCTG | + |
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Preference number: 4 (lower is better) Translates to: SRTHTKELLSLKTVKYFSLGPTR*PEPWCL Trigger: CAGACACCAAGGTTCTGGGCAGCGTGTCGGACCTAG...TGAAAAGTACTTTACTGTTTTTAAGGAGAGTAGCTCCTTTGTGTGTGTGCGTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS-3UTR TCA 90 bp | TTGTCAGTTAGAAAAATCCCAGATAGTCATAGTTTGAAGCCATCAGCCTGGGCTCGTCCAGGACATGGTTaGGATAGGAGATGTAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: LSVRKIPDSHSLKPSAWARPGHG*DRRCSR Trigger: TCTGCTACATCTCCTATCTCAACCATGTCCTGGACG...AGCCCAGGCTGATGGCTTCAAACTATGACTATCTGGGATTTTTCTAACTGACAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| 3UTR CAA 72 bp | CGTGGGTACCAATTAGATGTTTCAGTGACACATGCTTaGTGCTTAAGTGCCCAGAGGGAAAGCTGTCAAAAA | + |
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Preference number: 4 (lower is better) Translates to: RGYQLDVSVTHA*CLSAQRESCQK Trigger: TTTTTGACAGCTTTCCCTCTGGGCACTTAAGCACAAAGCATGTGTCACTGAAACATCTAATTGGTACCCACG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066187.6 |
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| 3UTR CAA 72 bp | GATTTGTCAGTTAGAAAAATCCCAGATAGTCATAGTTaGAAGCCATCAGCCTGGGCTAAGCTGTCCTCATTC | + |
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Preference number: 4 (lower is better) Translates to: DLSVRKIPDSHS*KPSAWAKLSSF Trigger: GAATGAGGACAGCTTAGCCCAGGCTGATGGCTTCAAACTATGACTATCTGGGATTTTTCTAACTGACAAATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS GCA 90 bp | CTTCGCGGCTCAGCTGCTGCGGGTGCGGGTAGAGCGCGGCCCGGCTaGCTCCCTTGCCGTCGCCGTCCGCCTCCTCCACTGGCTCTAGGT | + |
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Preference number: 5 (lower is better) Translates to: LRGSAAAGAGRARPG*LPCRRRPPPPLALG Trigger: ACCTAGAGCCAGTGGAGGAGGCGGACGGCGACGGCAAGGGAGGCAGCCGGGCCGCGCTCTACCCGCACCCGCAGCAGCTGAGCCGCGAAG 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS GCA 90 bp | TGCCGTCGCCGTCCGCCTCCTCCACTGGCTCTAGGTCCGACACGCTaGCCAGAACCTTGGTGTCTGCGCCGCCCAGAGACTCCGGGTCCG | + |
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Preference number: 5 (lower is better) Translates to: CRRRPPPPLALGPTR*PEPWCLRRPETPGP Trigger: CGGACCCGGAGTCTCTGGGCGGCGCAGACACCAAGGTTCTGGGCAGCGTGTCGGACCTAGAGCCAGTGGAGGAGGCGGACGGCGACGGCA 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS CCA 90 bp | CCGCCTCCTCCACTGGCTCTAGGTCCGACACGCTGCCCAGAACCTTaGTGTCTGCGCCGCCCAGAGACTCCGGGTCCGAGTGCGTCGAGC | + |
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Preference number: 5 (lower is better) Translates to: PPPPLALGPTRCPEP*CLRRPETPGPSASS Trigger: GCTCGACGCACTCGGACCCGGAGTCTCTGGGCGGCGCAGACACCAAGGTTCTGGGCAGCGTGTCGGACCTAGAGCCAGTGGAGGAGGCGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS-3UTR CAA 90 bp | AGGGCATCTCATTCTAGGTGCCTCCAGAAGGATTTTCTGGCCAGGAAAATCCCCTGGGCCGATCGGTACTaGGCCGTGGCGCGCCGGCGG | + |
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Preference number: 5 (lower is better) Translates to: RASHSRCLQKDFLARKIPWADRY*AVARRR Trigger: CCGCCGGCGCGCCACGGCCAAGTACCGATCGGCCCA...GGGGATTTTCCTGGCCAGAAAATCCTTCTGGAGGCACCTAGAATGAGATGCCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS-3UTR CAA 90 bp | CCTGTTGCCTTGATGACTAGAAAGAACAGGCTGCAAAGCTTTCTCCTGCGTTCAACGCTGCCCAGAACCTaGGTGTCTGCGCCGCCCAGA | + |
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Preference number: 5 (lower is better) Translates to: PVALMTRKNRLQSFLLRSTLPRT*VSAPPR Trigger: TCTGGGCGGCGCAGACACCAAGGTTCTGGGCAGCGT...TGAACGCAGGAGAAAGCTTTGCAGCCTGTTCTTTCTAGTCATCAAGGCAACAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS-3UTR CAA 90 bp | TTTGGTGATTTGTCAGTTAGAAAAATCCCAGATAGTCATAGTTTGAAGCCATCATGGGCCGATCGGTACTaGGCCGTGGCGCGCCGGCGG | + |
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Preference number: 5 (lower is better) Translates to: FGDLSVRKIPDSHSLKPSWADRY*AVARRR Trigger: CCGCCGGCGCGCCACGGCCAAGTACCGATCGGCCCA...TGATGGCTTCAAACTATGACTATCTGGGATTTTTCTAACTGACAAATCACCAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS-3UTR CAA 90 bp | TCACGCACACACACAAAGGAGCTACTCTCCTTAAAAACAGTAAAGTACTTTTCAACGCTGCCCAGAACCTaGGTGTCTGCGCCGCCCAGA | + |
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Preference number: 5 (lower is better) Translates to: SRTHTKELLSLKTVKYFSTLPRT*VSAPPR Trigger: TCTGGGCGGCGCAGACACCAAGGTTCTGGGCAGCGT...TGAAAAGTACTTTACTGTTTTTAAGGAGAGTAGCTCCTTTGTGTGTGTGCGTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS-3UTR CAA 90 bp | TTTGGTGATTTGTCAGTTAGAAAAATCCCAGATAGTCATAGTTTGAAGCCATCAACGCTGCCCAGAACCTaGGTGTCTGCGCCGCCCAGA | + |
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Preference number: 5 (lower is better) Translates to: FGDLSVRKIPDSHSLKPSTLPRT*VSAPPR Trigger: TCTGGGCGGCGCAGACACCAAGGTTCTGGGCAGCGT...TGATGGCTTCAAACTATGACTATCTGGGATTTTTCTAACTGACAAATCACCAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS GCA 72 bp | TCAGCTGCTGCGGGTGCGGGTAGAGCGCGGCCCGGCTaGCTCCCTTGCCGTCGCCGTCCGCCTCCTCCACTG | + |
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Preference number: 6 (lower is better) Translates to: SAAAGAGRARPG*LPCRRRPPPPL Trigger: CAGTGGAGGAGGCGGACGGCGACGGCAAGGGAGGCAGCCGGGCCGCGCTCTACCCGCACCCGCAGCAGCTGA 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS CCA 72 bp | CGCCGCCCAGAGACTCCGGGTCCGAGTGCGTCGAGCTaGGGTGATCTGAGTCGGCGGCTTGGTCCGGACTCA | + |
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Preference number: 6 (lower is better) Translates to: RRPETPGPSASS*GDLSRRLGPDS Trigger: TGAGTCCGGACCAAGCCGCCGACTCAGATCACCCCAGCTCGACGCACTCGGACCCGGAGTCTCTGGGCGGCG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS TCA 72 bp | CCCAGAGACTCCGGGTCCGAGTGCGTCGAGCTGGGGTaGTCTGAGTCGGCGGCTTGGTCCGGACTCAGCATC | + |
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Preference number: 6 (lower is better) Translates to: PRDSGSECVELG*SESAAWSGLSI Trigger: GATGCTGAGTCCGGACCAAGCCGCCGACTCAGATCACCCCAGCTCGACGCACTCGGACCCGGAGTCTCTGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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| CDS CCA 72 bp | CCACTGGCTCTAGGTCCGACACGCTGCCCAGAACCTTaGTGTCTGCGCCGCCCAGAGACTCCGGGTCCGAGT | + |
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Preference number: 6 (lower is better) Translates to: PLALGPTRCPEP*CLRRPETPGPS Trigger: ACTCGGACCCGGAGTCTCTGGGCGGCGCAGACACCAAGGTTCTGGGCAGCGTGTCGGACCTAGAGCCAGTGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000066187.6 ENSMUST00000196324.2 ENSMUST00000198675.2 |
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