Pregenerated sensors for NHLH1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051251Ensembl transcript IDs: ENSMUST00000059794.4
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TACAGGGAATTTAAGGCCCATAGACTCTGGGTCGCAAGGCTACAATaGGCAGGTGGGTGGGGCTCAGCAGCATGGGCGGGTCACCTTCCT | + |
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Preference number: 1 (lower is better) Translates to: YREFKAHRLWVARLQ*AGGWGSAAWAGHLP Trigger: AGGAAGGTGACCCGCCCATGCTGCTGAGCCCCACCCACCTGCCCATTGTAGCCTTGCGACCCAGAGTCTATGGGCCTTAAATTCCCTGTA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR TCA 90 bp | TGTGCAGAGAGGCTAGGCTTAGTAAACCCAGCACGGACTCCATTCTaGCCACTCTGGCAAGCAACTCTGACCAAGCTAGGCCGGAACAAC | + |
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Preference number: 1 (lower is better) Translates to: CAERLGLVNPARTPF*PLWQATLTKLGRNN Trigger: GTTGTTCCGGCCTAGCTTGGTCAGAGTTGCTTGCCAGAGTGGTCAGAATGGAGTCCGTGCTGGGTTTACTAAGCCTAGCCTCTCTGCACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR GCA 90 bp | AGAAGGGGTACCAGTATGGTGGGTGAAGGGATCCCCACACATACTTaGACTAGAGAAAGAAGAAGAGAAGTGACCCGGGAGAGAGCAAGA | + |
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Preference number: 1 (lower is better) Translates to: RRGTSMVGEGIPTHT*TRERRREVTRERAR Trigger: TCTTGCTCTCTCCCGGGTCACTTCTCTTCTTCTTTCTCTAGTGCAAGTATGTGTGGGGATCCCTTCACCCACCATACTGGTACCCCTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR TCA 90 bp | TCTCTGAAGGAACCCATAAGAACATCCTTCACATTCCTGGGCCAATaGAAAGAAACCGCCTTCAGGACTAGCGATGTGAGCCTGGTCCTC | + |
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Preference number: 1 (lower is better) Translates to: SLKEPIRTSFTFLGQ*KETAFRTSDVSLVL Trigger: GAGGACCAGGCTCACATCGCTAGTCCTGAAGGCGGTTTCTTTTCATTGGCCCAGGAATGTGAAGGATGTTCTTATGGGTTCCTTCAGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR TCA 90 bp | AATAAATACATAAATAAATATCCTTGTAGAGCTAGGAGTTTGGTGTaGGGATGGATGGAGCAGAGAAAAGCAGTGAGTTCTTCTACAGGG | + |
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Preference number: 1 (lower is better) Translates to: NKYINKYPCRARSLV*GWMEQRKAVSSSTG Trigger: CCCTGTAGAAGAACTCACTGCTTTTCTCTGCTCCATCCATCCTCACACCAAACTCCTAGCTCTACAAGGATATTTATTTATGTATTTATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR-3UTR CCA 90 bp | ACAGGACACCAGACACAGATCCCAGGGTCTGCTCTTGGTGGTTTGGGGAAAAGCTGGAAGGAGCTGCTGTaGAGCGGCCCCACCCAGGGC | + |
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Preference number: 2 (lower is better) Translates to: TGHQTQIPGSALGGLGKSWKELL*SGPTQG Trigger: GCCCTGGGTGGGGCCGCTCCACAGCAGCTCCTTCCA...GCTTTTCCCCAAACCACCAAGAGCAGACCCTGGGATCTGTGTCTGGTGTCCTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR-3UTR CCA 90 bp | AGAAGAAGAGAAGTGACCCGGGAGAGAGCAAGAGGACCTCAGCTAAAGCAAGCTGTGAGCCTGGTCCTCTaGGATGGGAGGGGGCCGGCC | + |
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Preference number: 2 (lower is better) Translates to: RRREVTRERARGPQLKQAVSLVL*DGRGPA Trigger: GGCCGGCCCCCTCCCATCCCAGAGGACCAGGCTCAC...AGCTTGCTTTAGCTGAGGTCCTCTTGCTCTCTCCCGGGTCACTTCTCTTCTTCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR-3UTR GCA 90 bp | ATGCCCTTGCATCTGAGGGAGGAGCTGATGGGGTTTGCATGTTTTCAAGGGTCCTGGGATGGAAGGAGCTaGTGTGGAGCGGCCCCACCC | + |
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Preference number: 2 (lower is better) Translates to: MPLHLREELMGFACFQGSWDGRS*CGAAPP Trigger: GGGTGGGGCCGCTCCACAGCAGCTCCTTCCATCCCA...GGACCCTTGAAAACATGCAAACCCCATCAGCTCCTCCCTCAGATGCAAGGGCAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR-3UTR CCA 90 bp | ACACACAGGACACCAGACACAGATCCCAGGGTCTGCTCTTGGTGGTTTGGGGAAAGGGAGAATTCTGGGTaGCAGGGGTGGGAGGGGACC | + |
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Preference number: 2 (lower is better) Translates to: THRTPDTDPRVCSWWFGERENSG*QGWEGT Trigger: GGTCCCCTCCCACCCCTGCCACCCAGAATTCTCCCT...TTCCCCAAACCACCAAGAGCAGACCCTGGGATCTGTGTCTGGTGTCCTGTGTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR-3UTR CCA 90 bp | GCATTCGTAGAGGGCAGTAGCAGGCATGCCCTTGCATCTGAGGGAGGAGCTGATAAGGGTCCCCTGGGATaGAAGGAGCTGCTGTGGAGC | + |
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Preference number: 2 (lower is better) Translates to: AFVEGSSRHALASEGGADKGPLG*KELLWS Trigger: GCTCCACAGCAGCTCCTTCCATCCCAGGGGACCCTT...ATCAGCTCCTCCCTCAGATGCAAGGGCATGCCTGCTACTGCCCTCTACGAATGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR-3UTR TCA 90 bp | GGCAGCAGGGAGAGATTGAGAAAGGACCCCCTAGAAGCTGGGAGGCTGAGAAGGGCACGGACTCCATTCTaGCCACTCTGGCAAGCAACT | + |
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Preference number: 2 (lower is better) Translates to: GSRERLRKDPLEAGRLRRARTPF*PLWQAT Trigger: AGTTGCTTGCCAGAGTGGTCAGAATGGAGTCCGTGC...CCTTCTCAGCCTCCCAGCTTCTAGGGGGTCCTTTCTCAATCTCTCCCTGCTGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR-3UTR CCA 90 bp | AAGACACACAGGACACCAGACACAGATCCCAGGGTCTGCTCTTGGTGGTTTGGGGTCGCAAGGCTACAATaGGCAGGTGGGTGGGGCTCA | + |
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Preference number: 2 (lower is better) Translates to: KTHRTPDTDPRVCSWWFGVARLQ*AGGWGS Trigger: TGAGCCCCACCCACCTGCCCATTGTAGCCTTGCGAC...CCCAAACCACCAAGAGCAGACCCTGGGATCTGTGTCTGGTGTCCTGTGTGTCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR-3UTR TCA 90 bp | GGCAGCAGGGAGAGATTGAGAAAGGACCCCCTAGAAGCTGGGAGGCTGAGAAGGCTAAGTAATGTATGGTaGCAGGGGGCTCTGGAGAGG | + |
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Preference number: 2 (lower is better) Translates to: GSRERLRKDPLEAGRLRRLSNVW*QGALER Trigger: CCTCTCCAGAGCCCCCTGTCACCATACATTACTTAG...CCTTCTCAGCCTCCCAGCTTCTAGGGGGTCCTTTCTCAATCTCTCCCTGCTGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR-3UTR CCA 90 bp | ACAGGACACCAGACACAGATCCCAGGGTCTGCTCTTGGTGGTTTGGGGAAAAGCAGAGGCCCAGGGAAATaGGGAGAATCCAGGGTGGGA | + |
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Preference number: 2 (lower is better) Translates to: TGHQTQIPGSALGGLGKSRGPGK*GESRVG Trigger: TCCCACCCTGGATTCTCCCCATTTCCCTGGGCCTCT...GCTTTTCCCCAAACCACCAAGAGCAGACCCTGGGATCTGTGTCTGGTGTCCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR-3UTR GCA 90 bp | GCATTCGTAGAGGGCAGTAGCAGGCATGCCCTTGCATCTGAGGGAGGAGCTGATATGAGGCAGCAGCTGTaGAGAGAGGCTAGGCTTAGT | + |
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Preference number: 2 (lower is better) Translates to: AFVEGSSRHALASEGGADMRQQL*REARLS Trigger: ACTAAGCCTAGCCTCTCTGCACAGCTGCTGCCTCAT...ATCAGCTCCTCCCTCAGATGCAAGGGCATGCCTGCTACTGCCCTCTACGAATGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR-3UTR CCA 90 bp | AGAAGAAGAGAAGTGACCCGGGAGAGAGCAAGAGGACCTCAGCTAAAGCAAGCTGCTACAATGGGCAGGTaGGTGGGGCTCAGCAGCATG | + |
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Preference number: 2 (lower is better) Translates to: RRREVTRERARGPQLKQAATMGR*VGLSSM Trigger: CATGCTGCTGAGCCCCACCCACCTGCCCATTGTAGC...AGCTTGCTTTAGCTGAGGTCCTCTTGCTCTCTCCCGGGTCACTTCTCTTCTTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR CAA 90 bp | CACACAGGACACCAGACACAGATCCCAGGGTCTGCTCTTGGTGGTTaGGGGAAAAGCAGGGCTGGTAAGAGGAATGGAGTACACAGGACT | + |
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Preference number: 2 (lower is better) Translates to: HTGHQTQIPGSALGG*GKSRAGKRNGVHRT Trigger: AGTCCTGTGTACTCCATTCCTCTTACCAGCCCTGCTTTTCCCCAAACCACCAAGAGCAGACCCTGGGATCTGTGTCTGGTGTCCTGTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR-3UTR TCA 90 bp | ACACACAGGACACCAGACACAGATCCCAGGGTCTGCTCTTGGTGGTTTGGGGAAAGGGACAGATGGAGCTaGAGAAGGGGTACCAGTATG | + |
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Preference number: 2 (lower is better) Translates to: THRTPDTDPRVCSWWFGERDRWS*RRGTSM Trigger: CATACTGGTACCCCTTCTTCAGCTCCATCTGTCCCT...TTCCCCAAACCACCAAGAGCAGACCCTGGGATCTGTGTCTGGTGTCCTGTGTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR-3UTR TCA 90 bp | ACAGGACACCAGACACAGATCCCAGGGTCTGCTCTTGGTGGTTTGGGGAAAAGCACATTCCTGGGCCAATaGAAAGAAACCGCCTTCAGG | + |
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Preference number: 2 (lower is better) Translates to: TGHQTQIPGSALGGLGKSTFLGQ*KETAFR Trigger: CCTGAAGGCGGTTTCTTTTCATTGGCCCAGGAATGT...GCTTTTCCCCAAACCACCAAGAGCAGACCCTGGGATCTGTGTCTGGTGTCCTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR-3UTR TCA 90 bp | AAGACACACAGGACACCAGACACAGATCCCAGGGTCTGCTCTTGGTGGTTTGGGAAAGAAGAAGAGAAGTaGCCCGGGAGAGAGCAAGAG | + |
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Preference number: 2 (lower is better) Translates to: KTHRTPDTDPRVCSWWFGKEEEK*PGREQE Trigger: CTCTTGCTCTCTCCCGGGTCACTTCTCTTCTTCTTT...CCCAAACCACCAAGAGCAGACCCTGGGATCTGTGTCTGGTGTCCTGTGTGTCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR-3UTR TCA 90 bp | AGAAGAAGAGAAGTGACCCGGGAGAGAGCAAGAGGACCTCAGCTAAAGCAAGCTGCTAGGAGTTTGGTGTaGGGATGGATGGAGCAGAGA | + |
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Preference number: 2 (lower is better) Translates to: RRREVTRERARGPQLKQAARSLV*GWMEQR Trigger: TCTCTGCTCCATCCATCCTCACACCAAACTCCTAGC...AGCTTGCTTTAGCTGAGGTCCTCTTGCTCTCTCCCGGGTCACTTCTCTTCTTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR-3UTR CCA 90 bp | TACCCAGGATTCACCTCCGTCATCTCTCTGCCATCCCAAGAGCCCATTCCTCCCCATCCTTCACATTCCTaGGCCAATGAAAAGAAACCG | + |
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Preference number: 2 (lower is better) Translates to: YPGFTSVISLPSQEPIPPHPSHS*ANEKKP Trigger: CGGTTTCTTTTCATTGGCCCAGGAATGTGAAGGATG...GGGAGGAATGGGCTCTTGGGATGGCAGAGAGATGACGGAGGTGAATCCTGGGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR-3UTR CCA 90 bp | AGAAGAAGAGAAGTGACCCGGGAGAGAGCAAGAGGACCTCAGCTAAAGCAAGCTGTAGAGCTAGGAGTTTaGTGTGAGGATGGATGGAGC | + |
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Preference number: 2 (lower is better) Translates to: RRREVTRERARGPQLKQAVELGV*CEDGWS Trigger: GCTCCATCCATCCTCACACCAAACTCCTAGCTCTAC...AGCTTGCTTTAGCTGAGGTCCTCTTGCTCTCTCCCGGGTCACTTCTCTTCTTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR-3UTR TCA 90 bp | CCCTGGGCTGTTTGGGGGTGTCATCCTTATCCCAGGACTAAGGTTTTCCTTTTTAGGGTCTGGGGTCTCTaGAAACTTGGGCATAGGATA | + |
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Preference number: 2 (lower is better) Translates to: PWAVWGCHPYPRTKVFLFRVWGL*KLGHRI Trigger: TATCCTATGCCCAAGTTTTCAGAGACCCCAGACCCT...AAAAAGGAAAACCTTAGTCCTGGGATAAGGATGACACCCCCAAACAGCCCAGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR-3UTR TCA 90 bp | CCCTGGGCTGTTTGGGGGTGTCATCCTTATCCCAGGACTAAGGTTTTCCTTTTTCCTAAGCCTCAGGACTaGGAGAGACAAAAGAAAGGC | + |
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Preference number: 2 (lower is better) Translates to: PWAVWGCHPYPRTKVFLFPKPQD*ERQKKG Trigger: GCCTTTCTTTTGTCTCTCTCAGTCCTGAGGCTTAGG...AAAAAGGAAAACCTTAGTCCTGGGATAAGGATGACACCCCCAAACAGCCCAGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR-3UTR CCA 90 bp | CCCTGGGCTGTTTGGGGGTGTCATCCTTATCCCAGGACTAAGGTTTTCCTTTTTTTTTCCTATAATCCCTaGCTACCCAGGATTCACCTC | + |
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Preference number: 2 (lower is better) Translates to: PWAVWGCHPYPRTKVFLFFSYNP*LPRIHL Trigger: GAGGTGAATCCTGGGTAGCCAGGGATTATAGGAAAA...AAAAAGGAAAACCTTAGTCCTGGGATAAGGATGACACCCCCAAACAGCCCAGGG 48% GC, longest homopolymer 9 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR-3UTR CAA 90 bp | GAGGGCAGTAGCAGGCATGCCCTTGCATCTGAGGGAGGAGCTGATGGGGTTTGCGGTGCCCTGGGCTGTTaGGGGGTGTCATCCTTATCC | + |
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Preference number: 3 (lower is better) Translates to: EGSSRHALASEGGADGVCGALGC*GVSSLS Trigger: GGATAAGGATGACACCCCCAAACAGCCCAGGGCACC...GCAAACCCCATCAGCTCCTCCCTCAGATGCAAGGGCATGCCTGCTACTGCCCTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR TCA 72 bp | GATGGGAGGGGGCCGGCCATTCTAAGTAATGTATGGTaGCAGGGGGCTCTGGAGAGGCCCAGGGAAATGGGG | + |
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Preference number: 3 (lower is better) Translates to: DGRGPAILSNVW*QGALERPREMG Trigger: CCCCATTTCCCTGGGCCTCTCCAGAGCCCCCTGTCACCATACATTACTTAGAATGGCCGGCCCCCTCCCATC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR TCA 72 bp | GCCAATGAAAAGAAACCGCCTTCAGGACTAGCGATGTaGGCCTGGTCCTCTGGGATGGGAGGGGGCCGGCCA | + |
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Preference number: 3 (lower is better) Translates to: ANEKKPPSGLAM*AWSSGMGGGRP Trigger: TGGCCGGCCCCCTCCCATCCCAGAGGACCAGGCTCACATCGCTAGTCCTGAAGGCGGTTTCTTTTCATTGGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR CCA 72 bp | TTTAAGGCCCATAGACTCTGGGTCGCAAGGCTACAATaGGCAGGTGGGTGGGGCTCAGCAGCATGGGCGGGT | + |
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Preference number: 3 (lower is better) Translates to: FKAHRLWVARLQ*AGGWGSAAWAG Trigger: ACCCGCCCATGCTGCTGAGCCCCACCCACCTGCCCATTGTAGCCTTGCGACCCAGAGTCTATGGGCCTTAAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR CCA 72 bp | ACCGCCTTCAGGACTAGCGATGTGAGCCTGGTCCTCTaGGATGGGAGGGGGCCGGCCATTCTAAGTAATGTA | + |
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Preference number: 3 (lower is better) Translates to: TAFRTSDVSLVL*DGRGPAILSNV Trigger: TACATTACTTAGAATGGCCGGCCCCCTCCCATCCCAGAGGACCAGGCTCACATCGCTAGTCCTGAAGGCGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR CCA 72 bp | GAGTTCTTCTACAGGGAATTTAAGGCCCATAGACTCTaGGTCGCAAGGCTACAATGGGCAGGTGGGTGGGGC | + |
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Preference number: 3 (lower is better) Translates to: EFFYREFKAHRL*VARLQWAGGWG Trigger: GCCCCACCCACCTGCCCATTGTAGCCTTGCGACCCAGAGTCTATGGGCCTTAAATTCCCTGTAGAAGAACTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR TCA 72 bp | AGGCTAGGCTTAGTAAACCCAGCACGGACTCCATTCTaGCCACTCTGGCAAGCAACTCTGACCAAGCTAGGC | + |
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Preference number: 3 (lower is better) Translates to: RLGLVNPARTPF*PLWQATLTKLG Trigger: GCCTAGCTTGGTCAGAGTTGCTTGCCAGAGTGGTCAGAATGGAGTCCGTGCTGGGTTTACTAAGCCTAGCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR CCA 72 bp | CAGCAGGGAGAGATTGAGAAAGGACCCCCTAGAAGCTaGGAGGCTGAGAAGGGACACTATTCCAGAGGAAAG | + |
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Preference number: 3 (lower is better) Translates to: QQGEIEKGPPRS*EAEKGHYSRGK Trigger: CTTTCCTCTGGAATAGTGTCCCTTCTCAGCCTCCCAGCTTCTAGGGGGTCCTTTCTCAATCTCTCCCTGCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR CCA 72 bp | ACCAGACACAGATCCCAGGGTCTGCTCTTGGTGGTTTaGGGAAAAGCAGGGCTGGTAAGAGGAATGGAGTAC | + |
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Preference number: 3 (lower is better) Translates to: TRHRSQGLLLVV*GKAGLVRGMEY Trigger: GTACTCCATTCCTCTTACCAGCCCTGCTTTTCCCCAAACCACCAAGAGCAGACCCTGGGATCTGTGTCTGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR GCA 72 bp | ACCAGTATGGTGGGTGAAGGGATCCCCACACATACTTaGACTAGAGAAAGAAGAAGAGAAGTGACCCGGGAG | + |
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Preference number: 3 (lower is better) Translates to: TSMVGEGIPTHT*TRERRREVTRE Trigger: CTCCCGGGTCACTTCTCTTCTTCTTTCTCTAGTGCAAGTATGTGTGGGGATCCCTTCACCCACCATACTGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR TCA 72 bp | TCAACCTCTGCCGCTAGTCAGTTCCCATTCCGATTTTaGGTCCCACCATTGCCAGAAAGAGAGTTAGGGTCT | + |
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Preference number: 3 (lower is better) Translates to: STSAASQFPFRF*VPPLPERELGS Trigger: AGACCCTAACTCTCTTTCTGGCAATGGTGGGACTCAAAATCGGAATGGGAACTGACTAGCGGCAGAGGTTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR TCA 72 bp | GAACCCATAAGAACATCCTTCACATTCCTGGGCCAATaGAAAGAAACCGCCTTCAGGACTAGCGATGTGAGC | + |
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Preference number: 3 (lower is better) Translates to: EPIRTSFTFLGQ*KETAFRTSDVS Trigger: GCTCACATCGCTAGTCCTGAAGGCGGTTTCTTTTCATTGGCCCAGGAATGTGAAGGATGTTCTTATGGGTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR TCA 72 bp | ATAAATAAATATCCTTGTAGAGCTAGGAGTTTGGTGTaGGGATGGATGGAGCAGAGAAAAGCAGTGAGTTCT | + |
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Preference number: 3 (lower is better) Translates to: INKYPCRARSLV*GWMEQRKAVSS Trigger: AGAACTCACTGCTTTTCTCTGCTCCATCCATCCTCACACCAAACTCCTAGCTCTACAAGGATATTTATTTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| CDS-3UTR CCA 90 bp | GGCAGCAGGGAGAGATTGAGAAAGGACCCCCTAGAAGCTGGGAGGCTGAGAAGGGGATGCGCTCCCGCGTaGCGTGTGCCGTGCGGTACT | + |
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Preference number: 4 (lower is better) Translates to: GSRERLRKDPLEAGRLRRGCAPA*RVPCGT Trigger: AGTACCGCACGGCACACGCCACGCGGGAGCGCATCC...CCTTCTCAGCCTCCCAGCTTCTAGGGGGTCCTTTCTCAATCTCTCCCTGCTGCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| CDS-3UTR GCA 90 bp | AGGGAGAGATTGAGAAAGGACCCCCTAGAAGCTGGGAGGCTGAGAAGGGACACTCGCGGCGCCGGCGCCTaGGCTCCTCACGACTCAAGT | + |
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Preference number: 4 (lower is better) Translates to: RERLRKDPLEAGRLRRDTRGAGA*APHDSS Trigger: ACTTGAGTCGTGAGGAGCGCAGGCGCCGGCGCCGCG...AGTGTCCCTTCTCAGCCTCCCAGCTTCTAGGGGGTCCTTTCTCAATCTCTCCCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| CDS-3UTR GCA 90 bp | AAGACACACAGGACACCAGACACAGATCCCAGGGTCTGCTCTTGGTGGTTTGGGGCGTGGCGTGTGCCGTaGGGTACTTGGCCGTGGCGC | + |
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Preference number: 4 (lower is better) Translates to: KTHRTPDTDPRVCSWWFGAWRVP*GTWPWR Trigger: GCGCCACGGCCAAGTACCGCACGGCACACGCCACGC...CCCAAACCACCAAGAGCAGACCCTGGGATCTGTGTCTGGTGTCCTGTGTGTCTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| CDS-3UTR CCA 90 bp | ACACACAGGACACCAGACACAGATCCCAGGGTCTGCTCTTGGTGGTTTGGGGAACGGTCTCCGAGTGGGTaGGAGGCAGGTCCAGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: THRTPDTDPRVCSWWFGERSPSG*EAGPAP Trigger: TGGAGCTGGACCTGCCTCCCACCCACTCGGAGACCG...TTCCCCAAACCACCAAGAGCAGACCCTGGGATCTGTGTCTGGTGTCCTGTGTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| CDS-3UTR CCA 90 bp | ACACACAGGACACCAGACACAGATCCCAGGGTCTGCTCTTGGTGGTTTGGGGAAGACTCGGTCTCCGAGTaGGTGGGAGGCAGGTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: THRTPDTDPRVCSWWFGEDSVSE*VGGRSS Trigger: GCTGGACCTGCCTCCCACCCACTCGGAGACCGAGTC...TTCCCCAAACCACCAAGAGCAGACCCTGGGATCTGTGTCTGGTGTCCTGTGTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR CAA 72 bp | ACACAGGACACCAGACACAGATCCCAGGGTCTGCTCTaGGTGGTTTGGGGAAAAGCAGGGCTGGTAAGAGGA | + |
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Preference number: 4 (lower is better) Translates to: TQDTRHRSQGLL*VVWGKAGLVRG Trigger: TCCTCTTACCAGCCCTGCTTTTCCCCAAACCACCAAGAGCAGACCCTGGGATCTGTGTCTGGTGTCCTGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| 3UTR CAA 72 bp | CACCAGACACAGATCCCAGGGTCTGCTCTTGGTGGTTaGGGGAAAAGCAGGGCTGGTAAGAGGAATGGAGTA | + |
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Preference number: 4 (lower is better) Translates to: HQTQIPGSALGG*GKSRAGKRNGV Trigger: TACTCCATTCCTCTTACCAGCCCTGCTTTTCCCCAAACCACCAAGAGCAGACCCTGGGATCTGTGTCTGGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| CDS GCA 90 bp | GGCGCCGGCGCCTGCGCTCCTCACGACTCAAGTGCTGCAGGTCTTTaGGGCCGGACTCTCCAAGCTCTGAGCTCCGGACCTGGACCACTC | + |
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Preference number: 5 (lower is better) Translates to: GAGACAPHDSSAAGL*GRTLQALSSGPGPL Trigger: GAGTGGTCCAGGTCCGGAGCTCAGAGCTTGGAGAGTCCGGCCGCAAAGACCTGCAGCACTTGAGTCGTGAGGAGCGCAGGCGCCGGCGCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| CDS CCA 90 bp | TGCAGGTCTTTGCGGCCGGACTCTCCAAGCTCTGAGCTCCGGACCTaGACCACTCCTGGATCCCCGGATCCAGCACCATCGGGGCCCGGT | + |
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Preference number: 5 (lower is better) Translates to: CRSLRPDSPSSELRT*TTPGSPDPAPSGPG Trigger: ACCGGGCCCCGATGGTGCTGGATCCGGGGATCCAGGAGTGGTCCAGGTCCGGAGCTCAGAGCTTGGAGAGTCCGGCCGCAAAGACCTGCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| CDS CCA 90 bp | CCCGGTCCGCCCCCACAGTCGCTAAAGCCCGACTCGGTCTCCGAGTaGGTGGGAGGCAGGTCCAGCTCCATGGTATCGGAGTTGAGCATC | + |
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Preference number: 5 (lower is better) Translates to: PGPPPQSLKPDSVSE*VGGRSSSMVSELSI Trigger: GATGCTCAACTCCGATACCATGGAGCTGGACCTGCCTCCCACCCACTCGGAGACCGAGTCGGGCTTTAGCGACTGTGGGGGCGGACCGGG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| CDS TCA 90 bp | ACGACTCAAGTGCTGCAGGTCTTTGCGGCCGGACTCTCCAAGCTCTaGGCTCCGGACCTGGACCACTCCTGGATCCCCGGATCCAGCACC | + |
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Preference number: 5 (lower is better) Translates to: TTQVLQVFAAGLSKL*APDLDHSWIPGSST Trigger: GGTGCTGGATCCGGGGATCCAGGAGTGGTCCAGGTCCGGAGCTCAGAGCTTGGAGAGTCCGGCCGCAAAGACCTGCAGCACTTGAGTCGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| CDS-3UTR CAA 90 bp | GCATTCGTAGAGGGCAGTAGCAGGCATGCCCTTGCATCTGAGGGAGGAGCTGATATCTTAGAGAGCTTCTaGTCCGGGGGCAGAGTGGGC | + |
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Preference number: 5 (lower is better) Translates to: AFVEGSSRHALASEGGADILESF*SGGRVG Trigger: GCCCACTCTGCCCCCGGACAAGAAGCTCTCTAAGAT...ATCAGCTCCTCCCTCAGATGCAAGGGCATGCCTGCTACTGCCCTCTACGAATGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| CDS GCA 72 bp | GCGCGGCGCCGGCGCCTGCGCTCCTCACGACTCAAGTaGTGCAGGTCTTTGCGGCCGGACTCTCCAAGCTCT | + |
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Preference number: 6 (lower is better) Translates to: ARRRRLRSSRLK*CRSLRPDSPSS Trigger: AGAGCTTGGAGAGTCCGGCCGCAAAGACCTGCAGCACTTGAGTCGTGAGGAGCGCAGGCGCCGGCGCCGCGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| CDS GCA 72 bp | CGGCGCCGGCGCCTGCGCTCCTCACGACTCAAGTGCTaGAGGTCTTTGCGGCCGGACTCTCCAAGCTCTGAG | + |
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Preference number: 6 (lower is better) Translates to: RRRRLRSSRLKC*RSLRPDSPSSE Trigger: CTCAGAGCTTGGAGAGTCCGGCCGCAAAGACCTGCAGCACTTGAGTCGTGAGGAGCGCAGGCGCCGGCGCCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| CDS CCA 72 bp | CCCCCACAGTCGCTAAAGCCCGACTCGGTCTCCGAGTaGGTGGGAGGCAGGTCCAGCTCCATGGTATCGGAG | + |
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Preference number: 6 (lower is better) Translates to: PPQSLKPDSVSE*VGGRSSSMVSE Trigger: CTCCGATACCATGGAGCTGGACCTGCCTCCCACCCACTCGGAGACCGAGTCGGGCTTTAGCGACTGTGGGGG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| CDS CCA 72 bp | TTGCGGCCGGACTCTCCAAGCTCTGAGCTCCGGACCTaGACCACTCCTGGATCCCCGGATCCAGCACCATCG | + |
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Preference number: 6 (lower is better) Translates to: LRPDSPSSELRT*TTPGSPDPAPS Trigger: CGATGGTGCTGGATCCGGGGATCCAGGAGTGGTCCAGGTCCGGAGCTCAGAGCTTGGAGAGTCCGGCCGCAA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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| CDS GCA 72 bp | GCCTGCGCTCCTCACGACTCAAGTGCTGCAGGTCTTTaGGGCCGGACTCTCCAAGCTCTGAGCTCCGGACCT | + |
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Preference number: 6 (lower is better) Translates to: ACAPHDSSAAGL*GRTLQALSSGP Trigger: AGGTCCGGAGCTCAGAGCTTGGAGAGTCCGGCCGCAAAGACCTGCAGCACTTGAGTCGTGAGGAGCGCAGGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059794.4 |
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