Pregenerated sensors for NHEJ1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026162Ensembl transcript IDs: ENSMUST00000152855.3
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTAAAGTCCCCATCCAGGTGGCCTGTCAACACAAACTCAGGCCTCTaGGGGATGCTCTGCCATGCAAGCTCCTTCCAGGTGATGCTAGGA | + |
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Preference number: 1 (lower is better) Translates to: VKSPSRWPVNTNSGL*GMLCHASSFQVMLG Trigger: TCCTAGCATCACCTGGAAGGAGCTTGCATGGCAGAGCATCCCTCAGAGGCCTGAGTTTGTGTTGACAGGCCACCTGGATGGGGACTTTAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| 3UTR-3UTR GCA 90 bp | AAGGAGCTGGTGTCACTCATATCCGGAATGCCAGTGAGTTGGAGTCAGGCTTCCCAGGCCTCTGAGGGATaGTCTGCCATGCAAGCTCCT | + |
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Preference number: 2 (lower is better) Translates to: KELVSLISGMPVSWSQASQASEG*SAMQAP Trigger: AGGAGCTTGCATGGCAGAGCATCCCTCAGAGGCCTG...GGAAGCCTGACTCCAACTCACTGGCATTCCGGATATGAGTGACACCAGCTCCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| 3UTR-3UTR TCA 90 bp | TCTGTTCTAGGGGGATTCTGGGATCCAGAGATCACAGGTAACCTCAACAGTCGAAGAGAGAGACCCCTGTaGAAGGCAGCCAGGAGTTCT | + |
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Preference number: 2 (lower is better) Translates to: SVLGGFWDPEITGNLNSRRERPL*KAARSS Trigger: AGAACTCCTGGCTGCCTTTCACAGGGGTCTCTCTCT...TCGACTGTTGAGGTTACCTGTGATCTCTGGATCCCAGAATCCCCCTAGAACAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| 3UTR-3UTR CCA 90 bp | TCTGTTCTAGGGGGATTCTGGGATCCAGAGATCACAGGTAACCTCAACAGTCGAGGAATGCCAGTGAGTTaGAGTCAGGCTTCCCCTGGT | + |
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Preference number: 2 (lower is better) Translates to: SVLGGFWDPEITGNLNSRGMPVS*SQASPG Trigger: ACCAGGGGAAGCCTGACTCCAACTCACTGGCATTCC...TCGACTGTTGAGGTTACCTGTGATCTCTGGATCCCAGAATCCCCCTAGAACAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| 3UTR-3UTR TCA 90 bp | AGAGAGTTCTCAAGATCAAGTCTTCTAACTGTGGCTGACCTCAGCCTCATGAGAACAAACTCAGGCCTCTaGGGGATGCTCTGCCATGCA | + |
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Preference number: 2 (lower is better) Translates to: REFSRSSLLTVADLSLMRTNSGL*GMLCHA Trigger: TGCATGGCAGAGCATCCCTCAGAGGCCTGAGTTTGT...TCTCATGAGGCTGAGGTCAGCCACAGTTAGAAGACTTGATCTTGAGAACTCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| 3UTR-3UTR GCA 90 bp | CCAACATGGAGAGAGTTCTCAAGATCAAGTCTTCTAACTGTGGCTGACCTCAGCAGGGATGCTCTGCCATaGAAGCTCCTTCCAGGTGAT | + |
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Preference number: 2 (lower is better) Translates to: PTWREFSRSSLLTVADLSRDALP*KLLPGD Trigger: ATCACCTGGAAGGAGCTTGCATGGCAGAGCATCCCT...GCTGAGGTCAGCCACAGTTAGAAGACTTGATCTTGAGAACTCTCTCCATGTTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| 3UTR-3UTR CCA 90 bp | AGATCAAGTCTTCTAACTGTGGCTGACCTCAGCCTCATGAGAGAAGCTGACGAAACCCAAGCAAGGAGCTaGTGTCACTCATATCCGGAA | + |
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Preference number: 2 (lower is better) Translates to: RSSLLTVADLSLMREADETQARS*CHSYPE Trigger: TTCCGGATATGAGTGACACCAGCTCCTTGCTTGGGT...TTCGTCAGCTTCTCTCATGAGGCTGAGGTCAGCCACAGTTAGAAGACTTGATCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| 3UTR TCA 72 bp | CCATCCAGGTGGCCTGTCAACACAAACTCAGGCCTCTaGGGGATGCTCTGCCATGCAAGCTCCTTCCAGGTG | + |
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Preference number: 3 (lower is better) Translates to: PSRWPVNTNSGL*GMLCHASSFQV Trigger: CACCTGGAAGGAGCTTGCATGGCAGAGCATCCCTCAGAGGCCTGAGTTTGTGTTGACAGGCCACCTGGATGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| 3UTR CCA 72 bp | GAGCTGGTGTCACTCATATCCGGAATGCCAGTGAGTTaGAGTCAGGCTTCCCCTGGTAAAGTCCCCATCCAG | + |
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Preference number: 3 (lower is better) Translates to: ELVSLISGMPVS*SQASPGKVPIQ Trigger: CTGGATGGGGACTTTACCAGGGGAAGCCTGACTCCAACTCACTGGCATTCCGGATATGAGTGACACCAGCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| 3UTR-3UTR CAA 90 bp | CCAACATGGAGAGAGTTCTCAAGATCAAGTCTTCTAACTGTGGCTGACCTCAGCCGGAATGCCAGTGAGTaGGAGTCAGGCTTCCCCTGG | + |
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Preference number: 3 (lower is better) Translates to: PTWREFSRSSLLTVADLSRNASE*ESGFPW Trigger: CCAGGGGAAGCCTGACTCCAACTCACTGGCATTCCG...GCTGAGGTCAGCCACAGTTAGAAGACTTGATCTTGAGAACTCTCTCCATGTTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| 3UTR TCA 72 bp | CATCCTTTATTCTGTGTTGAGAGAGAGAGACCCCTGTaGAAGGCAGCCAGGAGTTCTGGGCATGCGCCTCTT | + |
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Preference number: 3 (lower is better) Translates to: HPLFCVERERPL*KAARSSGHAPL Trigger: AAGAGGCGCATGCCCAGAACTCCTGGCTGCCTTTCACAGGGGTCTCTCTCTCTCAACACAGAATAAAGGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| 3UTR-3UTR CAA 90 bp | AGAGAGTTCTCAAGATCAAGTCTTCTAACTGTGGCTGACCTCAGCCTCATGAGACGCCTCTTTGTAAACTaGCTTCATGTACCTAAGTTT | + |
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Preference number: 3 (lower is better) Translates to: REFSRSSLLTVADLSLMRRLFVN*LHVPKF Trigger: AAACTTAGGTACATGAAGCAAGTTTACAAAGAGGCG...TCTCATGAGGCTGAGGTCAGCCACAGTTAGAAGACTTGATCTTGAGAACTCTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR TCA 90 bp | TGCAAGCTCCTTCCAGGTGATGCTAGGAAGCGGTTTTGCTCTCTTCGTGGTGGCCCTTGGCTCGCTGGCTaGCCACCGAAGTGTCCACCT | + |
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Preference number: 4 (lower is better) Translates to: CKLLPGDARKRFCSLRGGPWLAG*PPKCPP Trigger: AGGTGGACACTTCGGTGGTCAGCCAGCGAGCCAAGG...GCCACCACGAAGAGAGCAAAACCGCTTCCTAGCATCACCTGGAAGGAGCTTGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR GCA 90 bp | CTGGTGTCACTCATATCCGGAATGCCAGTGAGTTGGAGTCAGGCTTCCCCTGGTGTGACAGAGCAAAGCTaGAGGAGGCGCAGTGAGGCG | + |
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Preference number: 4 (lower is better) Translates to: LVSLISGMPVSWSQASPGVTEQS*RRRSEA Trigger: CGCCTCACTGCGCCTCCTGCAGCTTTGCTCTGTCAC...ACCAGGGGAAGCCTGACTCCAACTCACTGGCATTCCGGATATGAGTGACACCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR CCA 90 bp | GCAAGCTCCTTCCAGGTGATGCTAGGAAGCGGTTTTGCTCTCTTCGTGGTGGCTAGCTCCTTGGCTCGCTaGCTGACCACCGAAGTGTCC | + |
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Preference number: 4 (lower is better) Translates to: ASSFQVMLGSGFALFVVASSLAR*LTTEVS Trigger: GGACACTTCGGTGGTCAGCCAGCGAGCCAAGGAGCT...AGCCACCACGAAGAGAGCAAAACCGCTTCCTAGCATCACCTGGAAGGAGCTTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR TCA 90 bp | CCCAGTTCTGTTCTAGGGGGATTCTGGGATCCAGAGATCACAGGTAACCTCAACCTGCAGGAGGCGCAGTaGGGCGCTTGTTCAGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: PSSVLGGFWDPEITGNLNLQEAQ*GACSAP Trigger: AGGAGCTGAACAAGCGCCTCACTGCGCCTCCTGCAG...GTTGAGGTTACCTGTGATCTCTGGATCCCAGAATCCCCCTAGAACAGAACTGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR TCA 90 bp | TCTGTTCTAGGGGGATTCTGGGATCCAGAGATCACAGGTAACCTCAACAGTCGAGCTAGCTCCCTCACATaGCTCTGCAGTGCCAGGCTC | + |
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Preference number: 4 (lower is better) Translates to: SVLGGFWDPEITGNLNSRASSLT*LCSARL Trigger: GAGCCTGGCACTGCAGAGTCATGTGAGGGAGCTAGC...TCGACTGTTGAGGTTACCTGTGATCTCTGGATCCCAGAATCCCCCTAGAACAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR TCA 90 bp | CCCAGTTCTGTTCTAGGGGGATTCTGGGATCCAGAGATCACAGGTAACCTCAACAGGGGAGGTGCTGCTTaGTGCCTGAGTCTCTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: PSSVLGGFWDPEITGNLNRGGAA*CLSLSR Trigger: TCTGGAGAGACTCAGGCATCAAGCAGCACCTCCCCT...GTTGAGGTTACCTGTGATCTCTGGATCCCAGAATCCCCCTAGAACAGAACTGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR CCA 90 bp | AAGGAGCTGGTGTCACTCATATCCGGAATGCCAGTGAGTTGGAGTCAGGCTTCCTGGGCTTCTTCCTCTTaGACTTCACCAGCCGAGCTC | + |
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Preference number: 4 (lower is better) Translates to: KELVSLISGMPVSWSQASWASSS*TSPAEL Trigger: GAGCTCGGCTGGTGAAGTCCAAGAGGAAGAAGCCCA...GGAAGCCTGACTCCAACTCACTGGCATTCCGGATATGAGTGACACCAGCTCCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR TCA 90 bp | CTGCCATGCAAGCTCCTTCCAGGTGATGCTAGGAAGCGGTTTTGCTCTCTTCGTTCTATGCATAGGGCCTaGAGCAGCCACAGGCTCATA | + |
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Preference number: 4 (lower is better) Translates to: LPCKLLPGDARKRFCSLRSMHRA*SSHRLI Trigger: TATGAGCCTGTGGCTGCTTCAGGCCCTATGCATAGA...ACGAAGAGAGCAAAACCGCTTCCTAGCATCACCTGGAAGGAGCTTGCATGGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR GCA 90 bp | CTGAGGGATGCTCTGCCATGCAAGCTCCTTCCAGGTGATGCTAGGAAGCGGTTTGGAATACAGTGGAAATaGCAACTGAAGGGAAGACCC | + |
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Preference number: 4 (lower is better) Translates to: LRDALPCKLLPGDARKRFGIQWK*QLKGRP Trigger: GGGTCTTCCCTTCAGTTGGCATTTCCACTGTATTCC...AAACCGCTTCCTAGCATCACCTGGAAGGAGCTTGCATGGCAGAGCATCCCTCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR CCA 90 bp | CTGAGGGATGCTCTGCCATGCAAGCTCCTTCCAGGTGATGCTAGGAAGCGGTTTCAGACTCATGGCAAATaGCTTTCCATCACCAACAGC | + |
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Preference number: 4 (lower is better) Translates to: LRDALPCKLLPGDARKRFQTHGK*LSITNS Trigger: GCTGTTGGTGATGGAAAGCCATTTGCCATGAGTCTG...AAACCGCTTCCTAGCATCACCTGGAAGGAGCTTGCATGGCAGAGCATCCCTCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR CCA 90 bp | AGAGAGTTCTCAAGATCAAGTCTTCTAACTGTGGCTGACCTCAGCCTCATGAGACAGGCTCTGAGAGGGTaGAAGAGAGGGAGACCGGCT | + |
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Preference number: 4 (lower is better) Translates to: REFSRSSLLTVADLSLMRQALRG*KRGRPA Trigger: AGCCGGTCTCCCTCTCTTCCACCCTCTCAGAGCCTG...TCTCATGAGGCTGAGGTCAGCCACAGTTAGAAGACTTGATCTTGAGAACTCTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR TCA 90 bp | TCTGTTCTAGGGGGATTCTGGGATCCAGAGATCACAGGTAACCTCAACAGTCGACTCATATTCAGGCTCTaGGAGGGTGGAAGAGAGGGA | + |
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Preference number: 4 (lower is better) Translates to: SVLGGFWDPEITGNLNSRLIFRL*EGGREG Trigger: TCCCTCTCTTCCACCCTCTCAGAGCCTGAATATGAG...TCGACTGTTGAGGTTACCTGTGATCTCTGGATCCCAGAATCCCCCTAGAACAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR GCA 90 bp | AGATCAAGTCTTCTAACTGTGGCTGACCTCAGCCTCATGAGAGAAGCTGACGAACACATGACTCTGCAGTaGCAGGCTCACACCCATCAG | + |
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Preference number: 4 (lower is better) Translates to: RSSLLTVADLSLMREADEHMTLQ*QAHTHQ Trigger: CTGATGGGTGTGAGCCTGGCACTGCAGAGTCATGTG...TTCGTCAGCTTCTCTCATGAGGCTGAGGTCAGCCACAGTTAGAAGACTTGATCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR GCA 90 bp | GCAAGCTCCTTCCAGGTGATGCTAGGAAGCGGTTTTGCTCTCTTCGTGGTGGCTCTGCTGTTTTGTAACTaGCACATACAGACTCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: ASSFQVMLGSGFALFVVALLFCN*HIQTLQ Trigger: CTGCAGAGTCTGTATGTGGCAGTTACAAAACAGCAG...AGCCACCACGAAGAGAGCAAAACCGCTTCCTAGCATCACCTGGAAGGAGCTTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR CCA 90 bp | CACAAACTCAGGCCTCTGAGGGATGCTCTGCCATGCAAGCTCCTTCCAGGTGATCTAGCTGGAATACAGTaGAAATGCCAACTGAAGGGA | + |
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Preference number: 4 (lower is better) Translates to: HKLRPLRDALPCKLLPGDLAGIQ*KCQLKG Trigger: TCCCTTCAGTTGGCATTTCCACTGTATTCCAGCTAG...ATCACCTGGAAGGAGCTTGCATGGCAGAGCATCCCTCAGAGGCCTGAGTTTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR CCA 90 bp | CTGAGGGATGCTCTGCCATGCAAGCTCCTTCCAGGTGATGCTAGGAAGCGGTTTTGTGCCTGCCTTGCTTaGATCTGCTGTTTTGTAACT | + |
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Preference number: 4 (lower is better) Translates to: LRDALPCKLLPGDARKRFCACLA*ICCFVT Trigger: AGTTACAAAACAGCAGATCCAAGCAAGGCAGGCACA...AAACCGCTTCCTAGCATCACCTGGAAGGAGCTTGCATGGCAGAGCATCCCTCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR TCA 90 bp | TCTGTTCTAGGGGGATTCTGGGATCCAGAGATCACAGGTAACCTCAACAGTCGATCATGCCACACCTGTTaGAGATCCGAAATCAGCAAG | + |
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Preference number: 4 (lower is better) Translates to: SVLGGFWDPEITGNLNSRSCHTC*RSEISK Trigger: CTTGCTGATTTCGGATCTTCAACAGGTGTGGCATGA...TCGACTGTTGAGGTTACCTGTGATCTCTGGATCCCAGAATCCCCCTAGAACAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR CCA 90 bp | CCCAGTTCTGTTCTAGGGGGATTCTGGGATCCAGAGATCACAGGTAACCTCAACAGAATCTTTAAACAGTaGGCGAAGTGCTTCATCCAG | + |
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Preference number: 4 (lower is better) Translates to: PSSVLGGFWDPEITGNLNRIFKQ*AKCFIQ Trigger: CTGGATGAAGCACTTCGCCCACTGTTTAAAGATTCT...GTTGAGGTTACCTGTGATCTCTGGATCCCAGAATCCCCCTAGAACAGAACTGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR GCA 90 bp | AGATCAAGTCTTCTAACTGTGGCTGACCTCAGCCTCATGAGAGAAGCTGACGAATGCCTTGCTTGGATCTaGTGTTTTGTAACTGCCACA | + |
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Preference number: 4 (lower is better) Translates to: RSSLLTVADLSLMREADECLAWI*CFVTAT Trigger: TGTGGCAGTTACAAAACAGCAGATCCAAGCAAGGCA...TTCGTCAGCTTCTCTCATGAGGCTGAGGTCAGCCACAGTTAGAAGACTTGATCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR CCA 90 bp | CTGAGGGATGCTCTGCCATGCAAGCTCCTTCCAGGTGATGCTAGGAAGCGGTTTAGAATTTTCTTCAAATaGCTCTGTCTTCAATCGACT | + |
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Preference number: 4 (lower is better) Translates to: LRDALPCKLLPGDARKRFRIFFK*LCLQST Trigger: AGTCGATTGAAGACAGAGCCATTTGAAGAAAATTCT...AAACCGCTTCCTAGCATCACCTGGAAGGAGCTTGCATGGCAGAGCATCCCTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR CCA 90 bp | AGAGAGTTCTCAAGATCAAGTCTTCTAACTGTGGCTGACCTCAGCCTCATGAGAGACTCTGCAGACTCATaGCAAATGGCTTTCCATCAC | + |
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Preference number: 4 (lower is better) Translates to: REFSRSSLLTVADLSLMRDSADS*QMAFHH Trigger: GTGATGGAAAGCCATTTGCCATGAGTCTGCAGAGTC...TCTCATGAGGCTGAGGTCAGCCACAGTTAGAAGACTTGATCTTGAGAACTCTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR GCA 90 bp | TCTGTTCTAGGGGGATTCTGGGATCCAGAGATCACAGGTAACCTCAACAGTCGACTCTGGCAATTTCTCTaGCATAAACTGTTCCAAGAA | + |
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Preference number: 4 (lower is better) Translates to: SVLGGFWDPEITGNLNSRLWQFL*HKLFQE Trigger: TTCTTGGAACAGTTTATGGCAGAGAAATTGCCAGAG...TCGACTGTTGAGGTTACCTGTGATCTCTGGATCCCAGAATCCCCCTAGAACAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR CAA 90 bp | CACAAACTCAGGCCTCTGAGGGATGCTCTGCCATGCAAGCTCCTTCCAGGTGATGGCGCAGTGAGGCGCTaGTTCAGCTCCTTGGCTCGC | + |
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Preference number: 5 (lower is better) Translates to: HKLRPLRDALPCKLLPGDGAVRR*FSSLAR Trigger: GCGAGCCAAGGAGCTGAACAAGCGCCTCACTGCGCC...ATCACCTGGAAGGAGCTTGCATGGCAGAGCATCCCTCAGAGGCCTGAGTTTGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR CAA 90 bp | GCAAGCTCCTTCCAGGTGATGCTAGGAAGCGGTTTTGCTCTCTTCGTGGTGGCTGAGGGGAGGTGCTGCTaGATGCCTGAGTCTCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: ASSFQVMLGSGFALFVVAEGRCC*MPESLQ Trigger: CTGGAGAGACTCAGGCATCAAGCAGCACCTCCCCTC...AGCCACCACGAAGAGAGCAAAACCGCTTCCTAGCATCACCTGGAAGGAGCTTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS GCA 90 bp | TTTAAACAGTGGGCGAAGTGCTTCATCCAGGTGACAGAGCAAAGCTaGAGGAGGCGCAGTGAGGCGCTTGTTCAGCTCCTTGGCTCGCTG | + |
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Preference number: 5 (lower is better) Translates to: FKQWAKCFIQVTEQS*RRRSEALVQLLGSL Trigger: CAGCGAGCCAAGGAGCTGAACAAGCGCCTCACTGCGCCTCCTGCAGCTTTGCTCTGTCACCTGGATGAAGCACTTCGCCCACTGTTTAAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS GCA 90 bp | AGTCCCCTGGGCTTCTTCCTCTTGGACTTCACCAGCCGAGCTCTATaGATAGGGCCTGAAGCAGCCACAGGCTCATATTCAGGCTCTGAG | + |
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Preference number: 5 (lower is better) Translates to: SPLGFFLLDFTSRAL*IGPEAATGSYSGSE Trigger: CTCAGAGCCTGAATATGAGCCTGTGGCTGCTTCAGGCCCTATGCATAGAGCTCGGCTGGTGAAGTCCAAGAGGAAGAAGCCCAGGGGACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR CAA 90 bp | TGCAAGCTCCTTCCAGGTGATGCTAGGAAGCGGTTTTGCTCTCTTCGTGGTGGCCTGGGCTTCTTCCTCTaGGACTTCACCAGCCGAGCT | + |
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Preference number: 5 (lower is better) Translates to: CKLLPGDARKRFCSLRGGLGFFL*DFTSRA Trigger: AGCTCGGCTGGTGAAGTCCAAGAGGAAGAAGCCCAG...GCCACCACGAAGAGAGCAAAACCGCTTCCTAGCATCACCTGGAAGGAGCTTGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS GCA 90 bp | ATACAGTGGAAATGCCAACTGAAGGGAAGACCCGAGAGCTCACTCTaGACCCGCAGGATCAGTCCCTCCTCTCCTCGGTCACAGGAGAAA | + |
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Preference number: 5 (lower is better) Translates to: IQWKCQLKGRPESSL*TRRISPSSPRSQEK Trigger: TTTCTCCTGTGACCGAGGAGAGGAGGGACTGATCCTGCGGGTGCAGAGTGAGCTCTCGGGTCTTCCCTTCAGTTGGCATTTCCACTGTAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR CAA 90 bp | TCTGTTCTAGGGGGATTCTGGGATCCAGAGATCACAGGTAACCTCAACAGTCGACGCTTGTTCAGCTCCTaGGCTCGCTGGCTGACCACC | + |
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Preference number: 5 (lower is better) Translates to: SVLGGFWDPEITGNLNSRRLFSS*ARWLTT Trigger: GGTGGTCAGCCAGCGAGCCAAGGAGCTGAACAAGCG...TCGACTGTTGAGGTTACCTGTGATCTCTGGATCCCAGAATCCCCCTAGAACAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS GCA 90 bp | AGTAGCTTTGCTAGGGTGAGCAGAATCTTTAAACAGTGGGCGAAGTaGTTCATCCAGGTGACAGAGCAAAGCTGCAGGAGGCGCAGTGAG | + |
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Preference number: 5 (lower is better) Translates to: SSFARVSRIFKQWAK*FIQVTEQSCRRRSE Trigger: CTCACTGCGCCTCCTGCAGCTTTGCTCTGTCACCTGGATGAAGCACTTCGCCCACTGTTTAAAGATTCTGCTCACCCTAGCAAAGCTACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR CAA 90 bp | CACAAACTCAGGCCTCTGAGGGATGCTCTGCCATGCAAGCTCCTTCCAGGTGATATGTGCCTGCCTTGCTaGGATCTGCTGTTTTGTAAC | + |
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Preference number: 5 (lower is better) Translates to: HKLRPLRDALPCKLLPGDMCLPC*DLLFCN Trigger: GTTACAAAACAGCAGATCCAAGCAAGGCAGGCACAT...ATCACCTGGAAGGAGCTTGCATGGCAGAGCATCCCTCAGAGGCCTGAGTTTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR CAA 90 bp | CTGGTGTCACTCATATCCGGAATGCCAGTGAGTTGGAGTCAGGCTTCCCCTGGTTTCATGCCACACCTGTaGAAGATCCGAAATCAGCAA | + |
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Preference number: 5 (lower is better) Translates to: LVSLISGMPVSWSQASPGFMPHL*KIRNQQ Trigger: TTGCTGATTTCGGATCTTCAACAGGTGTGGCATGAA...ACCAGGGGAAGCCTGACTCCAACTCACTGGCATTCCGGATATGAGTGACACCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS GCA 90 bp | TGCCTTGCTTGGATCTGCTGTTTTGTAACTGCCACATACAGACTCTaGAGACTCATGGCAAATGGCTTTCCATCACCAACAGCACACGCC | + |
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Preference number: 5 (lower is better) Translates to: CLAWICCFVTATYRL*RLMANGFPSPTAHA Trigger: GGCGTGTGCTGTTGGTGATGGAAAGCCATTTGCCATGAGTCTGCAGAGTCTGTATGTGGCAGTTACAAAACAGCAGATCCAAGCAAGGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS-3UTR CAA 90 bp | CCCAGTTCTGTTCTAGGGGGATTCTGGGATCCAGAGATCACAGGTAACCTCAACCTTTATGTGCCTGCCTaGCTTGGATCTGCTGTTTTG | + |
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Preference number: 5 (lower is better) Translates to: PSSVLGGFWDPEITGNLNLYVPA*LGSAVL Trigger: CAAAACAGCAGATCCAAGCAAGGCAGGCACATAAAG...GTTGAGGTTACCTGTGATCTCTGGATCCCAGAATCCCCCTAGAACAGAACTGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS GCA 90 bp | AGAGTCTTTATGTGCCTGCCTTGCTTGGATCTGCTGTTTTGTAACTaGCACATACAGACTCTGCAGACTCATGGCAAATGGCTTTCCATC | + |
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Preference number: 5 (lower is better) Translates to: RVFMCLPCLDLLFCN*HIQTLQTHGKWLSI Trigger: GATGGAAAGCCATTTGCCATGAGTCTGCAGAGTCTGTATGTGGCAGTTACAAAACAGCAGATCCAAGCAAGGCAGGCACATAAAGACTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS GCA 72 bp | TGGGCGAAGTGCTTCATCCAGGTGACAGAGCAAAGCTaGAGGAGGCGCAGTGAGGCGCTTGTTCAGCTCCTT | + |
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Preference number: 6 (lower is better) Translates to: WAKCFIQVTEQS*RRRSEALVQLL Trigger: AAGGAGCTGAACAAGCGCCTCACTGCGCCTCCTGCAGCTTTGCTCTGTCACCTGGATGAAGCACTTCGCCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS GCA 72 bp | AAATGCCAACTGAAGGGAAGACCCGAGAGCTCACTCTaGACCCGCAGGATCAGTCCCTCCTCTCCTCGGTCA | + |
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Preference number: 6 (lower is better) Translates to: KCQLKGRPESSL*TRRISPSSPRS Trigger: TGACCGAGGAGAGGAGGGACTGATCCTGCGGGTGCAGAGTGAGCTCTCGGGTCTTCCCTTCAGTTGGCATTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS CCA 72 bp | GAGAGGGTGGAAGAGAGGGAGACCGGCTCTTCTGGCTaGTTATCAGTTCCTCGAGGGGAGGTGCTGCTTGAT | + |
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Preference number: 6 (lower is better) Translates to: ERVEERETGSSG*LSVPRGEVLLD Trigger: ATCAAGCAGCACCTCCCCTCGAGGAACTGATAACCAGCCAGAAGAGCCGGTCTCCCTCTCTTCCACCCTCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS GCA 72 bp | GGCTTCTTCCTCTTGGACTTCACCAGCCGAGCTCTATaGATAGGGCCTGAAGCAGCCACAGGCTCATATTCA | + |
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Preference number: 6 (lower is better) Translates to: GFFLLDFTSRAL*IGPEAATGSYS Trigger: TGAATATGAGCCTGTGGCTGCTTCAGGCCCTATGCATAGAGCTCGGCTGGTGAAGTCCAAGAGGAAGAAGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS TCA 72 bp | TTATCAGTTCCTCGAGGGGAGGTGCTGCTTGATGCCTaGGTCTCTCCAGAGTCTTTATGTGCCTGCCTTGCT | + |
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Preference number: 6 (lower is better) Translates to: LSVPRGEVLLDA*VSPESLCACLA Trigger: AGCAAGGCAGGCACATAAAGACTCTGGAGAGACTCAGGCATCAAGCAGCACCTCCCCTCGAGGAACTGATAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS GCA 72 bp | GCTAGGGTGAGCAGAATCTTTAAACAGTGGGCGAAGTaGTTCATCCAGGTGACAGAGCAAAGCTGCAGGAGG | + |
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Preference number: 6 (lower is better) Translates to: ARVSRIFKQWAK*FIQVTEQSCRR Trigger: CCTCCTGCAGCTTTGCTCTGTCACCTGGATGAAGCACTTCGCCCACTGTTTAAAGATTCTGCTCACCCTAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS GCA 72 bp | CTTCTGGCTGGTTATCAGTTCCTCGAGGGGAGGTGCTaGTTGATGCCTGAGTCTCTCCAGAGTCTTTATGTG | + |
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Preference number: 6 (lower is better) Translates to: LLAGYQFLEGRC*LMPESLQSLYV Trigger: CACATAAAGACTCTGGAGAGACTCAGGCATCAAGCAGCACCTCCCCTCGAGGAACTGATAACCAGCCAGAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS GCA 72 bp | GCTCTTCTGGCTGGTTATCAGTTCCTCGAGGGGAGGTaGTGCTTGATGCCTGAGTCTCTCCAGAGTCTTTAT | + |
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Preference number: 6 (lower is better) Translates to: ALLAGYQFLEGR*CLMPESLQSLY Trigger: ATAAAGACTCTGGAGAGACTCAGGCATCAAGCAGCACCTCCCCTCGAGGAACTGATAACCAGCCAGAAGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS CAA 90 bp | TCGCTGGCTGACCACCGAAGTGTCCACCTGTTCATGCCACACCTGTaGAAGATCCGAAATCAGCAAGGCATAACCGTGCTTGGTGATAGA | + |
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Preference number: 6 (lower is better) Translates to: SLADHRSVHLFMPHL*KIRNQQGITVLGDR Trigger: TCTATCACCAAGCACGGTTATGCCTTGCTGATTTCGGATCTTCAACAGGTGTGGCATGAACAGGTGGACACTTCGGTGGTCAGCCAGCGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS CAA 72 bp | GACCACCGAAGTGTCCACCTGTTCATGCCACACCTGTaGAAGATCCGAAATCAGCAAGGCATAACCGTGCTT | + |
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Preference number: 6 (lower is better) Translates to: DHRSVHLFMPHL*KIRNQQGITVL Trigger: AAGCACGGTTATGCCTTGCTGATTTCGGATCTTCAACAGGTGTGGCATGAACAGGTGGACACTTCGGTGGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS TCA 72 bp | TCTCCTCGGTCACAGGAGAAAGTAGCTTTGCTAGGGTaGGCAGAATCTTTAAACAGTGGGCGAAGTGCTTCA | + |
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Preference number: 6 (lower is better) Translates to: SPRSQEKVALLG*AESLNSGRSAS Trigger: TGAAGCACTTCGCCCACTGTTTAAAGATTCTGCTCACCCTAGCAAAGCTACTTTCTCCTGTGACCGAGGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS GCA 72 bp | ATGTGCCTGCCTTGCTTGGATCTGCTGTTTTGTAACTaGCACATACAGACTCTGCAGACTCATGGCAAATGG | + |
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Preference number: 6 (lower is better) Translates to: MCLPCLDLLFCN*HIQTLQTHGKW Trigger: CCATTTGCCATGAGTCTGCAGAGTCTGTATGTGGCAGTTACAAAACAGCAGATCCAAGCAAGGCAGGCACAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS GCA 72 bp | TGCCTGAGTCTCTCCAGAGTCTTTATGTGCCTGCCTTaGTTGGATCTGCTGTTTTGTAACTGCCACATACAG | + |
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Preference number: 6 (lower is better) Translates to: CLSLSRVFMCLP*LDLLFCNCHIQ Trigger: CTGTATGTGGCAGTTACAAAACAGCAGATCCAAGCAAGGCAGGCACATAAAGACTCTGGAGAGACTCAGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS CAA 72 bp | CTGAGTCTCTCCAGAGTCTTTATGTGCCTGCCTTGCTaGGATCTGCTGTTTTGTAACTGCCACATACAGACT | + |
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Preference number: 6 (lower is better) Translates to: LSLSRVFMCLPC*DLLFCNCHIQT Trigger: AGTCTGTATGTGGCAGTTACAAAACAGCAGATCCAAGCAAGGCAGGCACATAAAGACTCTGGAGAGACTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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| CDS GCA 72 bp | TGGATCTGCTGTTTTGTAACTGCCACATACAGACTCTaGAGACTCATGGCAAATGGCTTTCCATCACCAACA | + |
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Preference number: 6 (lower is better) Translates to: WICCFVTATYRL*RLMANGFPSPT Trigger: TGTTGGTGATGGAAAGCCATTTGCCATGAGTCTGCAGAGTCTGTATGTGGCAGTTACAAAACAGCAGATCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152855.3 |
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