RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NGRN (Mus musculus)

Ensembl gene IDs: ENSMUSG00000047084

Ensembl transcript IDs: ENSMUST00000117989.2

Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TCTTGTTCTCAACAGAGAGACCACCAAGCAACAAAGACCAATGAGTaGTTAGATCCGGAGGGGACCCATGGGGCTTACTCCAGGAAGTCT +
Preference number: 1 (lower is better)
Translates to: SCSQQRDHQATKTNE*LDPEGTHGAYSRKS
Trigger: AGACTTCCTGGAGTAAGCCCCATGGGTCCCCTCCGGATCTAAGCACTCATTGGTCTTTGTTGCTTGGTGGTCTCTCTGTTGAGAACAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
3UTR GCA 90 bp AGCCTCACCAACTCTTACTCCAAAGTGGCCAATGGTGTGCAAAAATaGTGGCAGCTTCAAGTCTACCTGTCCAGCTGTGTCAAGACATCT +
Preference number: 1 (lower is better)
Translates to: SLTNSYSKVANGVQK*WQLQVYLSSCVKTS
Trigger: AGATGTCTTGACACAGCTGGACAGGTAGACTTGAAGCTGCCAGCATTTTTGCACACCATTGGCCACTTTGGAGTAAGAGTTGGTGAGGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
3UTR GCA 90 bp CACATTCTAGCCTCACCAACTCTTACTCCAAAGTGGCCAATGGTGTaGAAAAATGCTGGCAGCTTCAAGTCTACCTGTCCAGCTGTGTCA +
Preference number: 1 (lower is better)
Translates to: HILASPTLTPKWPMV*KNAGSFKSTCPAVS
Trigger: TGACACAGCTGGACAGGTAGACTTGAAGCTGCCAGCATTTTTGCACACCATTGGCCACTTTGGAGTAAGAGTTGGTGAGGCTAGAATGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
3UTR-3UTR GCA 90 bp CCCTGCCTAAGTAGCTCCTCCACCCACATTCTAGCCTCACCAACTCTTACTCCAAAGTGGCCAATGGTGTaGAAAAATGCTGGCAGCTTC +
Preference number: 2 (lower is better)
Translates to: PCLSSSSTHILASPTLTPKWPMV*KNAGSF
Trigger: GAAGCTGCCAGCATTTTTGCACACCATTGGCCACTT...TGGAGTAAGAGTTGGTGAGGCTAGAATGTGGGTGGAGGAGCTACTTAGGCAGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
3UTR GCA 72 bp CAACAGAGAGACCACCAAGCAACAAAGACCAATGAGTaGTTAGATCCGGAGGGGACCCATGGGGCTTACTCC +
Preference number: 3 (lower is better)
Translates to: QQRDHQATKTNE*LDPEGTHGAYS
Trigger: GGAGTAAGCCCCATGGGTCCCCTCCGGATCTAAGCACTCATTGGTCTTTGTTGCTTGGTGGTCTCTCTGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
3UTR TCA 72 bp TTCTCAACAGAGAGACCACCAAGCAACAAAGACCAATaGGTGCTTAGATCCGGAGGGGACCCATGGGGCTTA +
Preference number: 3 (lower is better)
Translates to: FSTERPPSNKDQ*VLRSGGDPWGL
Trigger: TAAGCCCCATGGGTCCCCTCCGGATCTAAGCACTCATTGGTCTTTGTTGCTTGGTGGTCTCTCTGTTGAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
3UTR GCA 72 bp GCCTCACCAACTCTTACTCCAAAGTGGCCAATGGTGTaGAAAAATGCTGGCAGCTTCAAGTCTACCTGTCCA +
Preference number: 3 (lower is better)
Translates to: ASPTLTPKWPMV*KNAGSFKSTCP
Trigger: TGGACAGGTAGACTTGAAGCTGCCAGCATTTTTGCACACCATTGGCCACTTTGGAGTAAGAGTTGGTGAGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
3UTR GCA 72 bp AACTCTTACTCCAAAGTGGCCAATGGTGTGCAAAAATaGTGGCAGCTTCAAGTCTACCTGTCCAGCTGTGTC +
Preference number: 3 (lower is better)
Translates to: NSYSKVANGVQK*WQLQVYLSSCV
Trigger: GACACAGCTGGACAGGTAGACTTGAAGCTGCCAGCATTTTTGCACACCATTGGCCACTTTGGAGTAAGAGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
3UTR CCA 72 bp ACCCACATTCTAGCCTCACCAACTCTTACTCCAAAGTaGCCAATGGTGTGCAAAAATGCTGGCAGCTTCAAG +
Preference number: 3 (lower is better)
Translates to: THILASPTLTPK*PMVCKNAGSFK
Trigger: CTTGAAGCTGCCAGCATTTTTGCACACCATTGGCCACTTTGGAGTAAGAGTTGGTGAGGCTAGAATGTGGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS-3UTR TCA 90 bp TCTAGCCTCACCAACTCTTACTCCAAAGTGGCCAATGGTGTGCAAAAATGCTGGGCACTACCTTGCTGCTaGAGCTCTGGTCACCCGGCT +
Preference number: 4 (lower is better)
Translates to: SSLTNSYSKVANGVQKCWALPCC*SSGHPA
Trigger: AGCCGGGTGACCAGAGCTTCAGCAGCAAGGTAGTGC...CCAGCATTTTTGCACACCATTGGCCACTTTGGAGTAAGAGTTGGTGAGGCTAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS-3UTR GCA 90 bp CCCTGCCTAAGTAGCTCCTCCACCCACATTCTAGCCTCACCAACTCTTACTCCATTCCCGTTTCTTCTGTaGGTCTGTGCTGTGAGGGTG +
Preference number: 4 (lower is better)
Translates to: PCLSSSSTHILASPTLTPFPFLL*VCAVRV
Trigger: CACCCTCACAGCACAGACGCACAGAAGAAACGGGAA...TGGAGTAAGAGTTGGTGAGGCTAGAATGTGGGTGGAGGAGCTACTTAGGCAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS-3UTR CCA 90 bp ATACATATAATTCTTGTTCTCAACAGAGAGACCACCAAGCAACAAAGACCAATGGGGCCCGCCATGACCTaGGACGCGAACCCACAGCGA +
Preference number: 4 (lower is better)
Translates to: IHIILVLNRETTKQQRPMGPAMT*DANPQR
Trigger: TCGCTGTGGGTTCGCGTCCCAGGTCATGGCGGGCCC...CATTGGTCTTTGTTGCTTGGTGGTCTCTCTGTTGAGAACAAGAATTATATGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS-3UTR CCA 90 bp GACCACCAAGCAACAAAGACCAATGAGTGCTTAGATCCGGAGGGGACCCATGGGTTTTTCAAGACCTTTTaGTCCTGCCTCAGTTTCTGC +
Preference number: 4 (lower is better)
Translates to: DHQATKTNECLDPEGTHGFFKTF*SCLSFC
Trigger: GCAGAAACTGAGGCAGGACCAAAAGGTCTTGAAAAA...CCCATGGGTCCCCTCCGGATCTAAGCACTCATTGGTCTTTGTTGCTTGGTGGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS-3UTR CCA 90 bp GCCTCACCAACTCTTACTCCAAAGTGGCCAATGGTGTGCAAAAATGCTGGCAGCCTCTCTTCCAAGACTTaGATTCTTTTATCCCTCCCT +
Preference number: 4 (lower is better)
Translates to: ASPTLTPKWPMVCKNAGSLSSKT*ILLSLP
Trigger: AGGGAGGGATAAAAGAATCCAAGTCTTGGAAGAGAG...GCTGCCAGCATTTTTGCACACCATTGGCCACTTTGGAGTAAGAGTTGGTGAGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS-3UTR CCA 90 bp CATATAATTCTTGTTCTCAACAGAGAGACCACCAAGCAACAAAGACCAATGAGTCGTCAGTGTTCTGGGTaGTGCACCTGGAGCCTCCAT +
Preference number: 4 (lower is better)
Translates to: HIILVLNRETTKQQRPMSRQCSG*CTWSLH
Trigger: ATGGAGGCTCCAGGTGCACCACCCAGAACACTGACG...ACTCATTGGTCTTTGTTGCTTGGTGGTCTCTCTGTTGAGAACAAGAATTATATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS-3UTR CCA 90 bp TTAAACAGATCAAGAATAGATTGTCCAGTGATTAGAAAGGAAATGAGGTCAGGACCCACGTCAGTGTTCTaGGTGGTGCACCTGGAGCCT +
Preference number: 4 (lower is better)
Translates to: LNRSRIDCPVIRKEMRSGPTSVF*VVHLEP
Trigger: AGGCTCCAGGTGCACCACCCAGAACACTGACGTGGG...TCCTGACCTCATTTCCTTTCTAATCACTGGACAATCTATTCTTGATCTGTTTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS-3UTR CCA 90 bp AGTATCACAAAAATCCACCACAGGATACATATAATTCTTGTTCTCAACAGAGAGACCGGATCTGCTCCATaGCTTCCCACGTCAGTGTTC +
Preference number: 4 (lower is better)
Translates to: SITKIHHRIHIILVLNRETGSAP*LPTSVF
Trigger: GAACACTGACGTGGGAAGCCATGGAGCAGATCCGGT...CTCTCTGTTGAGAACAAGAATTATATGTATCCTGTGGTGGATTTTTGTGATACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS-3UTR GCA 90 bp TATCACAAAAATCCACCACAGGATACATATAATTCTTGTTCTCAACAGAGAGACTGTAAATACCGGATCTaGTCCATGGCTTCCCACGTC +
Preference number: 4 (lower is better)
Translates to: YHKNPPQDTYNSCSQQRDCKYRI*SMASHV
Trigger: GACGTGGGAAGCCATGGAGCAGATCCGGTATTTACA...GTCTCTCTGTTGAGAACAAGAATTATATGTATCCTGTGGTGGATTTTTGTGATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS-3UTR GCA 90 bp TATCACAAAAATCCACCACAGGATACATATAATTCTTGTTCTCAACAGAGAGACAAGACCTTTTGGTCCTaGCTCAGTTTCTGCTCTAAA +
Preference number: 4 (lower is better)
Translates to: YHKNPPQDTYNSCSQQRDKTFWS*LSFCSK
Trigger: TTTAGAGCAGAAACTGAGGCAGGACCAAAAGGTCTT...GTCTCTCTGTTGAGAACAAGAATTATATGTATCCTGTGGTGGATTTTTGTGATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS-3UTR GCA 90 bp TATCACAAAAATCCACCACAGGATACATATAATTCTTGTTCTCAACAGAGAGACAGAGGAAGTTTCCATTaGTGTCAAAGAAGTCATGCC +
Preference number: 4 (lower is better)
Translates to: YHKNPPQDTYNSCSQQRDRGSFH*CQRSHA
Trigger: GGCATGACTTCTTTGACAGCAATGGAAACTTCCTCT...GTCTCTCTGTTGAGAACAAGAATTATATGTATCCTGTGGTGGATTTTTGTGATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS CCA 90 bp TCGGGGTCCGGCTCGCAGCTGACAGAACCCGGGCCCGCCATGACCTaGGACGCGAACCCACAGCGAGCGAGAGAGGTGCGGACACGACCG +
Preference number: 5 (lower is better)
Translates to: SGSGSQLTEPGPAMT*DANPQRAREVRTRP
Trigger: CGGTCGTGTCCGCACCTCTCTCGCTCGCTGTGGGTTCGCGTCCCAGGTCATGGCGGGCCCGGGTTCTGTCAGCTGCGAGCCGGACCCCGA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS CCA 90 bp GTAACGTATCACTGCCAGCTCTTCCGGTGGCCTCGGAGTCACTGGTaGCGGATTTCTGAAGCTCTCGCTGATGACCCAAGGCTGTGGTGG +
Preference number: 5 (lower is better)
Translates to: VTYHCQLFRWPRSHW*RISEALADDPRLWW
Trigger: CCACCACAGCCTTGGGTCATCAGCGAGAGCTTCAGAAATCCGCCACCAGTGACTCCGAGGCCACCGGAAGAGCTGGCAGTGATACGTTAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS CCA 90 bp TTGGTAACGTATCACTGCCAGCTCTTCCGGTGGCCTCGGAGTCACTaGTGGCGGATTTCTGAAGCTCTCGCTGATGACCCAAGGCTGTGG +
Preference number: 5 (lower is better)
Translates to: LVTYHCQLFRWPRSH*WRISEALADDPRLW
Trigger: CCACAGCCTTGGGTCATCAGCGAGAGCTTCAGAAATCCGCCACCAGTGACTCCGAGGCCACCGGAAGAGCTGGCAGTGATACGTTACCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS GCA 90 bp CAAAGCTGTGCTGTGATTCTGACTTTTAGAGGAGACTTCATCCCCTaGCATCAGCAGGCCAGACACAGAGCGGCCTGCACTGAGCGCCTT +
Preference number: 5 (lower is better)
Translates to: QSCAVILTFRGDFIP*HQQARHRAACTERL
Trigger: AAGGCGCTCAGTGCAGGCCGCTCTGTGTCTGGCCTGCTGATGGCAGGGGATGAAGTCTCCTCTAAAAGTCAGAATCACAGCACAGCTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS-3UTR CAA 90 bp GACCACCAAGCAACAAAGACCAATGAGTGCTTAGATCCGGAGGGGACCCATGGGCCTCTCTGCACTACCTaGCTGCTGAAGCTCTGGTCA +
Preference number: 5 (lower is better)
Translates to: DHQATKTNECLDPEGTHGPLCTT*LLKLWS
Trigger: TGACCAGAGCTTCAGCAGCAAGGTAGTGCAGAGAGG...CCCATGGGTCCCCTCCGGATCTAAGCACTCATTGGTCTTTGTTGCTTGGTGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS CCA 90 bp TGGTGGCGGATTTCTGAAGCTCTCGCTGATGACCCAAGGCTGTGGTaGCAGGCACTAGGCTCTCTTCCAAGACTTGGATTCTTTTATCCC +
Preference number: 5 (lower is better)
Translates to: WWRISEALADDPRLW*QALGSLPRLGFFYP
Trigger: GGGATAAAAGAATCCAAGTCTTGGAAGAGAGCCTAGTGCCTGCCACCACAGCCTTGGGTCATCAGCGAGAGCTTCAGAAATCCGCCACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS CCA 90 bp CACTGGTGGCGGATTTCTGAAGCTCTCGCTGATGACCCAAGGCTGTaGTGGCAGGCACTAGGCTCTCTTCCAAGACTTGGATTCTTTTAT +
Preference number: 5 (lower is better)
Translates to: HWWRISEALADDPRL*WQALGSLPRLGFFY
Trigger: ATAAAAGAATCCAAGTCTTGGAAGAGAGCCTAGTGCCTGCCACCACAGCCTTGGGTCATCAGCGAGAGCTTCAGAAATCCGCCACCAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS GCA 90 bp TTCCAAGACTTGGATTCTTTTATCCCTCCCTTCCCGTTTCTTCTGTaGGTCTGTGCTGTGAGGGTGCGACTTCGCCACTTTCAAAGCTGT +
Preference number: 5 (lower is better)
Translates to: FQDLDSFIPPFPFLL*VCAVRVRLRHFQSC
Trigger: ACAGCTTTGAAAGTGGCGAAGTCGCACCCTCACAGCACAGACGCACAGAAGAAACGGGAAGGGAGGGATAAAAGAATCCAAGTCTTGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS-3UTR CAA 90 bp TTAAACAGATCAAGAATAGATTGTCCAGTGATTAGAAAGGAAATGAGGTCAGGAGCTCTCTTCCAAGACTaGGATTCTTTTATCCCTCCC +
Preference number: 5 (lower is better)
Translates to: LNRSRIDCPVIRKEMRSGALFQD*DSFIPP
Trigger: GGGAGGGATAAAAGAATCCAAGTCTTGGAAGAGAGC...TCCTGACCTCATTTCCTTTCTAATCACTGGACAATCTATTCTTGATCTGTTTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS CCA 72 bp GGCTCGCAGCTGACAGAACCCGGGCCCGCCATGACCTaGGACGCGAACCCACAGCGAGCGAGAGAGGTGCGG +
Preference number: 6 (lower is better)
Translates to: GSQLTEPGPAMT*DANPQRAREVR
Trigger: CCGCACCTCTCTCGCTCGCTGTGGGTTCGCGTCCCAGGTCATGGCGGGCCCGGGTTCTGTCAGCTGCGAGCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS CAA 90 bp GGTCACCCGGCTCCCCGGGCTTCAGCTCTTCCAGCAGCACAGCACTaGGTAACGTATCACTGCCAGCTCTTCCGGTGGCCTCGGAGTCAC +
Preference number: 6 (lower is better)
Translates to: GHPAPRASALPAAQH*VTYHCQLFRWPRSH
Trigger: GTGACTCCGAGGCCACCGGAAGAGCTGGCAGTGATACGTTACCAAGTGCTGTGCTGCTGGAAGAGCTGAAGCCCGGGGAGCCGGGTGACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS CCA 72 bp CACTGCCAGCTCTTCCGGTGGCCTCGGAGTCACTGGTaGCGGATTTCTGAAGCTCTCGCTGATGACCCAAGG +
Preference number: 6 (lower is better)
Translates to: HCQLFRWPRSHW*RISEALADDPR
Trigger: CCTTGGGTCATCAGCGAGAGCTTCAGAAATCCGCCACCAGTGACTCCGAGGCCACCGGAAGAGCTGGCAGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS CAA 72 bp GCTCCCCGGGCTTCAGCTCTTCCAGCAGCACAGCACTaGGTAACGTATCACTGCCAGCTCTTCCGGTGGCCT +
Preference number: 6 (lower is better)
Translates to: APRASALPAAQH*VTYHCQLFRWP
Trigger: AGGCCACCGGAAGAGCTGGCAGTGATACGTTACCAAGTGCTGTGCTGCTGGAAGAGCTGAAGCCCGGGGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS GCA 72 bp ATCCCCTGCCATCAGCAGGCCAGACACAGAGCGGCCTaGACTGAGCGCCTTCAAGGTATCTTCAGAAACGGG +
Preference number: 6 (lower is better)
Translates to: IPCHQQARHRAA*TERLQGIFRNG
Trigger: CCCGTTTCTGAAGATACCTTGAAGGCGCTCAGTGCAGGCCGCTCTGTGTCTGGCCTGCTGATGGCAGGGGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS GCA 72 bp GCTCTTCCAGCAGCACAGCACTTGGTAACGTATCACTaGCAGCTCTTCCGGTGGCCTCGGAGTCACTGGTGG +
Preference number: 6 (lower is better)
Translates to: ALPAAQHLVTYH*QLFRWPRSHWW
Trigger: CCACCAGTGACTCCGAGGCCACCGGAAGAGCTGGCAGTGATACGTTACCAAGTGCTGTGCTGCTGGAAGAGC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS CCA 72 bp TATCACTGCCAGCTCTTCCGGTGGCCTCGGAGTCACTaGTGGCGGATTTCTGAAGCTCTCGCTGATGACCCA +
Preference number: 6 (lower is better)
Translates to: YHCQLFRWPRSH*WRISEALADDP
Trigger: TGGGTCATCAGCGAGAGCTTCAGAAATCCGCCACCAGTGACTCCGAGGCCACCGGAAGAGCTGGCAGTGATA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS TCA 72 bp TCCCTCCCTTCCCGTTTCTTCTGTGCGTCTGTGCTGTaGGGGTGCGACTTCGCCACTTTCAAAGCTGTGCTG +
Preference number: 6 (lower is better)
Translates to: SLPSRFFCASVL*GCDFATFKAVL
Trigger: CAGCACAGCTTTGAAAGTGGCGAAGTCGCACCCTCACAGCACAGACGCACAGAAGAAACGGGAAGGGAGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS CCA 72 bp CGGATTTCTGAAGCTCTCGCTGATGACCCAAGGCTGTaGTGGCAGGCACTAGGCTCTCTTCCAAGACTTGGA +
Preference number: 6 (lower is better)
Translates to: RISEALADDPRL*WQALGSLPRLG
Trigger: TCCAAGTCTTGGAAGAGAGCCTAGTGCCTGCCACCACAGCCTTGGGTCATCAGCGAGAGCTTCAGAAATCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS GCA 72 bp TTTTATCCCTCCCTTCCCGTTTCTTCTGTGCGTCTGTaGTGTGAGGGTGCGACTTCGCCACTTTCAAAGCTG +
Preference number: 6 (lower is better)
Translates to: FYPSLPVSSVRL*CEGATSPLSKL
Trigger: CAGCTTTGAAAGTGGCGAAGTCGCACCCTCACAGCACAGACGCACAGAAGAAACGGGAAGGGAGGGATAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS GCA 72 bp TTGGATTCTTTTATCCCTCCCTTCCCGTTTCTTCTGTaGGTCTGTGCTGTGAGGGTGCGACTTCGCCACTTT +
Preference number: 6 (lower is better)
Translates to: LDSFIPPFPFLL*VCAVRVRLRHF
Trigger: AAAGTGGCGAAGTCGCACCCTCACAGCACAGACGCACAGAAGAAACGGGAAGGGAGGGATAAAAGAATCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2
CDS CCA 72 bp GCTGTGGTGGCAGGCACTAGGCTCTCTTCCAAGACTTaGATTCTTTTATCCCTCCCTTCCCGTTTCTTCTGT +
Preference number: 6 (lower is better)
Translates to: AVVAGTRLSSKT*ILLSLPSRFFC
Trigger: ACAGAAGAAACGGGAAGGGAGGGATAAAAGAATCCAAGTCTTGGAAGAGAGCCTAGTGCCTGCCACCACAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117989.2