Pregenerated sensors for NGF (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027859Ensembl transcript IDs: ENSMUST00000035952.5, ENSMUST00000106925.9, ENSMUST00000198644.2
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TACAGTGATGTTGCGGGTCTGCCCTGTCACTCGGGCAGCTATTGGTaGAGTAGGGGCACTGCGGGCTCTGCGGAGGGCTGTGTCAAGGGA | + |
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Preference number: 5 (lower is better) Translates to: YSDVAGLPCHSGSYW*SRGTAGSAEGCVKG Trigger: TCCCTTGACACAGCCCTCCGCAGAGCCCGCAGTGCCCCTACTGCACCAATAGCTGCCCGAGTGACAGGGCAGACCCGCAACATCACTGTA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS GCA 90 bp | CCAGCCCCCTGGACTGCACGACCACAGGCCAAAACTCCACCATGCTaGCCGTGTCCCACCTCCAGGGAGCCTAATTTCACTGGCTTGAGG | + |
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Preference number: 5 (lower is better) Translates to: PAPWTARPQAKTPPC*PCPTSREPNFTGLR Trigger: CCTCAAGCCAGTGAAATTAGGCTCCCTGGAGGTGGGACACGGGCAGCATGGTGGAGTTTTGGCCTGTGGTCGTGCAGTCCAGGGGGCTGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106925.9 |
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| CDS CCA 90 bp | GTCTACAGTGATGTTGCGGGTCTGCCCTGTCACTCGGGCAGCTATTaGTGCAGTAGGGGCACTGCGGGCTCTGCGGAGGGCTGTGTCAAG | + |
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Preference number: 5 (lower is better) Translates to: VYSDVAGLPCHSGSY*CSRGTAGSAEGCVK Trigger: CTTGACACAGCCCTCCGCAGAGCCCGCAGTGCCCCTACTGCACCAATAGCTGCCCGAGTGACAGGGCAGACCCGCAACATCACTGTAGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS CCA 90 bp | CCAGACACTGAGGTGAGCTTGGGTCCAGCATGCCATCCAGCCCCCTaGACTGCACGACCACAGGCCAAAACTCCACCATGCTGCCCGTGT | + |
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Preference number: 5 (lower is better) Translates to: PDTEVSLGPACHPAP*TARPQAKTPPCCPC Trigger: ACACGGGCAGCATGGTGGAGTTTTGGCCTGTGGTCGTGCAGTCCAGGGGGCTGGATGGCATGCTGGACCCAAGCTCACCTCAGTGTCTGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106925.9 |
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| CDS GCA 90 bp | CATCCAGCCCCCTGGACTGCACGACCACAGGCCAAAACTCCACCATaGTGCCCGTGTCCCACCTCCAGGGAGCCTAATTTCACTGGCTTG | + |
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Preference number: 5 (lower is better) Translates to: HPAPWTARPQAKTPP*CPCPTSREPNFTGL Trigger: CAAGCCAGTGAAATTAGGCTCCCTGGAGGTGGGACACGGGCAGCATGGTGGAGTTTTGGCCTGTGGTCGTGCAGTCCAGGGGGCTGGATG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106925.9 |
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| CDS CCA 90 bp | CCAGACACTGAGGTGAGCTTGGGTCCAGCATGCCATCCAGCCCCCTaGACTGCACGACCACAGGCCAAAACTCCGAGGCTACTTGTGCTC | + |
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Preference number: 5 (lower is better) Translates to: PDTEVSLGPACHPAP*TARPQAKTPRLLVL Trigger: GAGCACAAGTAGCCTCGGAGTTTTGGCCTGTGGTCGTGCAGTCCAGGGGGCTGGATGGCATGCTGGACCCAAGCTCACCTCAGTGTCTGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000198644.2 |
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| CDS TCA 90 bp | AAGCTGCGTCCTTGGCAAAACCTTTATTGGGCCCAGACACTGAGGTaGGCTTGGGTCCAGCATGCCATCCAGCCCCCTGGACTGCACGAC | + |
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Preference number: 5 (lower is better) Translates to: KLRPWQNLYWAQTLR*AWVQHAIQPPGLHD Trigger: GTCGTGCAGTCCAGGGGGCTGGATGGCATGCTGGACCCAAGCTCACCTCAGTGTCTGGGCCCAATAAAGGTTTTGCCAAGGACGCAGCTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS GCA 90 bp | CTCCGTTTCTTAAACAGTCTGGGGTCTACAGTGATGTTGCGGGTCTaGCCTGTCACTCGGGCAGCTATTGGTGCAGTAGGGGCACTGCGG | + |
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Preference number: 5 (lower is better) Translates to: LRFLNSLGSTVMLRV*PVTRAAIGAVGALR Trigger: CCGCAGTGCCCCTACTGCACCAATAGCTGCCCGAGTGACAGGGCAGACCCGCAACATCACTGTAGACCCCAGACTGTTTAAGAAACGGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS GCA 90 bp | AGGTGTGAGTCGTGGTGCAGTATGAGTTCCAGTGTTTGGAGTCGATaGCCCGGCACCCACTCTCAACAGGATTGGAGGCTCGGCACTTGG | + |
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Preference number: 5 (lower is better) Translates to: RCESWCSMSSSVWSR*PGTHSQQDWRLGTW Trigger: CCAAGTGCCGAGCCTCCAATCCTGTTGAGAGTGGGTGCCGGGGCATCGACTCCAAACACTGGAACTCATACTGCACCACGACTCACACCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS TCA 90 bp | TCCCCCATGTGGAAGACTGGGTGGGTGGATGAGCGCTTGCTCCGGTaGGTCCTGTTGAAAGGGATTGTACCATGGGCCTGGAAGTCTAGA | + |
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Preference number: 5 (lower is better) Translates to: SPMWKTGWVDERLLR*VLLKGIVPWAWKSR Trigger: TCTAGACTTCCAGGCCCATGGTACAATCCCTTTCAACAGGACTCACCGGAGCAAGCGCTCATCCACCCACCCAGTCTTCCACATGGGGGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS TCA 90 bp | ATAGAAAGCTGCGTCCTTGGCAAAACCTTTATTGGGCCCAGACACTaGGGTGAGCTTGGGTCCAGCATGCCATCCAGCCCCCTGGACTGC | + |
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Preference number: 5 (lower is better) Translates to: IESCVLGKTFIGPRH*GELGSSMPSSPLDC Trigger: GCAGTCCAGGGGGCTGGATGGCATGCTGGACCCAAGCTCACCTCAGTGTCTGGGCCCAATAAAGGTTTTGCCAAGGACGCAGCTTTCTAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS CCA 90 bp | GCCTGGAAGTCTAGATCCAGAGTGTCTGAAGAGGTGGGTGGAGGCTaGGTGCTGAACAGCACACGGGGTGAGTGGAGTCTCCGTTTCTTA | + |
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Preference number: 5 (lower is better) Translates to: AWKSRSRVSEEVGGG*VLNSTRGEWSLRFL Trigger: TAAGAAACGGAGACTCCACTCACCCCGTGTGCTGTTCAGCACCCAGCCTCCACCCACCTCTTCAGACACTCTGGATCTAGACTTCCAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS TCA 90 bp | GGAAGACTGGGTGGGTGGATGAGCGCTTGCTCCGGTGAGTCCTGTTaGAAGGGATTGTACCATGGGCCTGGAAGTCTAGATCCAGAGTGT | + |
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Preference number: 5 (lower is better) Translates to: GRLGGWMSACSGESC*KGLYHGPGSLDPEC Trigger: ACACTCTGGATCTAGACTTCCAGGCCCATGGTACAATCCCTTTCAACAGGACTCACCGGAGCAAGCGCTCATCCACCCACCCAGTCTTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS TCA 90 bp | ATCTGTTGTCAACGCCTTGACGAAGGTGTGAGTCGTGGTGCAGTATaGGTTCCAGTGTTTGGAGTCGATGCCCCGGCACCCACTCTCAAC | + |
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Preference number: 5 (lower is better) Translates to: ICCQRLDEGVSRGAV*VPVFGVDAPAPTLN Trigger: GTTGAGAGTGGGTGCCGGGGCATCGACTCCAAACACTGGAACTCATACTGCACCACGACTCACACCTTCGTCAAGGCGTTGACAACAGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS TCA 90 bp | CAGGCAGCCTGCTTCTCATCTGTTGTCAACGCCTTGACGAAGGTGTaGGTCGTGGTGCAGTATGAGTTCCAGTGTTTGGAGTCGATGCCC | + |
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Preference number: 5 (lower is better) Translates to: QAACFSSVVNALTKV*VVVQYEFQCLESMP Trigger: GGGCATCGACTCCAAACACTGGAACTCATACTGCACCACGACTCACACCTTCGTCAAGGCGTTGACAACAGATGAGAAGCAGGCTGCCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS GCA 90 bp | AGGGACAGAGTCTCCTTCTGGGACATTGCTATCTGTGTACGGTTCTaGCTGTACGCCGATCAAAAACGCAGTGATCAGAGTGTAGAACAA | + |
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Preference number: 5 (lower is better) Translates to: RDRVSFWDIAICVRF*LYADQKRSDQSVEQ Trigger: TTGTTCTACACTCTGATCACTGCGTTTTTGATCGGCGTACAGGCAGAACCGTACACAGATAGCAATGTCCCAGAAGGAGACTCTGTCCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS TCA 90 bp | TGCTATCTGTGTACGGTTCTGCCTGTACGCCGATCAAAAACGCAGTaGTCAGAGTGTAGAACAACATGGACATTACGCTATGCACCTCAC | + |
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Preference number: 5 (lower is better) Translates to: CYLCTVLPVRRSKTQ*SECRTTWTLRYAPH Trigger: GTGAGGTGCATAGCGTAATGTCCATGTTGTTCTACACTCTGATCACTGCGTTTTTGATCGGCGTACAGGCAGAACCGTACACAGATAGCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS GCA 72 bp | GTTGCGGGTCTGCCCTGTCACTCGGGCAGCTATTGGTaGAGTAGGGGCACTGCGGGCTCTGCGGAGGGCTGT | + |
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Preference number: 6 (lower is better) Translates to: VAGLPCHSGSYW*SRGTAGSAEGC Trigger: ACAGCCCTCCGCAGAGCCCGCAGTGCCCCTACTGCACCAATAGCTGCCCGAGTGACAGGGCAGACCCGCAAC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS CCA 72 bp | GATGTTGCGGGTCTGCCCTGTCACTCGGGCAGCTATTaGTGCAGTAGGGGCACTGCGGGCTCTGCGGAGGGC | + |
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Preference number: 6 (lower is better) Translates to: DVAGLPCHSGSY*CSRGTAGSAEG Trigger: GCCCTCCGCAGAGCCCGCAGTGCCCCTACTGCACCAATAGCTGCCCGAGTGACAGGGCAGACCCGCAACATC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS GCA 72 bp | GAGCTTGGGTCCAGCATGCCATCCAGCCCCCTGGACTaGACGACCACAGGCCAAAACTCCACCATGCTGCCC | + |
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Preference number: 6 (lower is better) Translates to: ELGSSMPSSPLD*TTTGQNSTMLP Trigger: GGGCAGCATGGTGGAGTTTTGGCCTGTGGTCGTGCAGTCCAGGGGGCTGGATGGCATGCTGGACCCAAGCTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106925.9 |
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| CDS CCA 72 bp | GAGGTGAGCTTGGGTCCAGCATGCCATCCAGCCCCCTaGACTGCACGACCACAGGCCAAAACTCCACCATGC | + |
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Preference number: 6 (lower is better) Translates to: EVSLGPACHPAP*TARPQAKTPPC Trigger: GCATGGTGGAGTTTTGGCCTGTGGTCGTGCAGTCCAGGGGGCTGGATGGCATGCTGGACCCAAGCTCACCTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106925.9 |
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| CDS CCA 72 bp | GAGGTGAGCTTGGGTCCAGCATGCCATCCAGCCCCCTaGACTGCACGACCACAGGCCAAAACTCCGAGGCTA | + |
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Preference number: 6 (lower is better) Translates to: EVSLGPACHPAP*TARPQAKTPRL Trigger: TAGCCTCGGAGTTTTGGCCTGTGGTCGTGCAGTCCAGGGGGCTGGATGGCATGCTGGACCCAAGCTCACCTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000198644.2 |
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| CDS GCA 72 bp | CCCTGGACTGCACGACCACAGGCCAAAACTCCACCATaGTGCCCGTGTCCCACCTCCAGGGAGCCTAATTTC | + |
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Preference number: 6 (lower is better) Translates to: PWTARPQAKTPP*CPCPTSREPNF Trigger: GAAATTAGGCTCCCTGGAGGTGGGACACGGGCAGCATGGTGGAGTTTTGGCCTGTGGTCGTGCAGTCCAGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106925.9 |
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| CDS GCA 72 bp | GAGCTTGGGTCCAGCATGCCATCCAGCCCCCTGGACTaGACGACCACAGGCCAAAACTCCGAGGCTACTTGT | + |
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Preference number: 6 (lower is better) Translates to: ELGSSMPSSPLD*TTTGQNSEATC Trigger: ACAAGTAGCCTCGGAGTTTTGGCCTGTGGTCGTGCAGTCCAGGGGGCTGGATGGCATGCTGGACCCAAGCTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000198644.2 |
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| CDS CAA 90 bp | GCGTCCTTGGCAAAACCTTTATTGGGCCCAGACACTGAGGTGAGCTaGGGTCCAGCATGCCATCCAGCCCCCTGGACTGCACGACCACAG | + |
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Preference number: 6 (lower is better) Translates to: ASLAKPLLGPDTEVS*GPACHPAPWTARPQ Trigger: CTGTGGTCGTGCAGTCCAGGGGGCTGGATGGCATGCTGGACCCAAGCTCACCTCAGTGTCTGGGCCCAATAAAGGTTTTGCCAAGGACGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS TCA 72 bp | GGTGGGTGGAGGCTGGGTGCTGAACAGCACACGGGGTaGGTGGAGTCTCCGTTTCTTAAACAGTCTGGGGTC | + |
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Preference number: 6 (lower is better) Translates to: GGWRLGAEQHTG*VESPFLKQSGV Trigger: GACCCCAGACTGTTTAAGAAACGGAGACTCCACTCACCCCGTGTGCTGTTCAGCACCCAGCCTCCACCCACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS TCA 72 bp | CTGCGGGCTCTGCGGAGGGCTGTGTCAAGGGAATGCTaGAGTTTAGTCCAGTGGGCTTCAGGGACAGAGTCT | + |
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Preference number: 6 (lower is better) Translates to: LRALRRAVSREC*SLVQWASGTES Trigger: AGACTCTGTCCCTGAAGCCCACTGGACTAAACTTCAGCATTCCCTTGACACAGCCCTCCGCAGAGCCCGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS TCA 72 bp | TGGAAGACTGGGTGGGTGGATGAGCGCTTGCTCCGGTaGGTCCTGTTGAAAGGGATTGTACCATGGGCCTGG | + |
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Preference number: 6 (lower is better) Translates to: WKTGWVDERLLR*VLLKGIVPWAW Trigger: CCAGGCCCATGGTACAATCCCTTTCAACAGGACTCACCGGAGCAAGCGCTCATCCACCCACCCAGTCTTCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS TCA 72 bp | CAACGCCTTGACGAAGGTGTGAGTCGTGGTGCAGTATaGGTTCCAGTGTTTGGAGTCGATGCCCCGGCACCC | + |
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Preference number: 6 (lower is better) Translates to: QRLDEGVSRGAV*VPVFGVDAPAP Trigger: GGGTGCCGGGGCATCGACTCCAAACACTGGAACTCATACTGCACCACGACTCACACCTTCGTCAAGGCGTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS TCA 72 bp | CCTTGGCAAAACCTTTATTGGGCCCAGACACTGAGGTaGGCTTGGGTCCAGCATGCCATCCAGCCCCCTGGA | + |
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Preference number: 6 (lower is better) Translates to: PWQNLYWAQTLR*AWVQHAIQPPG Trigger: TCCAGGGGGCTGGATGGCATGCTGGACCCAAGCTCACCTCAGTGTCTGGGCCCAATAAAGGTTTTGCCAAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS TCA 72 bp | TGCGTCCTTGGCAAAACCTTTATTGGGCCCAGACACTaGGGTGAGCTTGGGTCCAGCATGCCATCCAGCCCC | + |
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Preference number: 6 (lower is better) Translates to: CVLGKTFIGPRH*GELGSSMPSSP Trigger: GGGGCTGGATGGCATGCTGGACCCAAGCTCACCTCAGTGTCTGGGCCCAATAAAGGTTTTGCCAAGGACGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS GCA 72 bp | TGGACTGCACGACCACAGGCCAAAACTCCACCATGCTaGCCGTGTCCCACCTCCAGGGAGCCTAATTTCACT | + |
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Preference number: 6 (lower is better) Translates to: WTARPQAKTPPC*PCPTSREPNFT Trigger: AGTGAAATTAGGCTCCCTGGAGGTGGGACACGGGCAGCATGGTGGAGTTTTGGCCTGTGGTCGTGCAGTCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106925.9 |
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| CDS CCA 72 bp | TCTAGATCCAGAGTGTCTGAAGAGGTGGGTGGAGGCTaGGTGCTGAACAGCACACGGGGTGAGTGGAGTCTC | + |
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Preference number: 6 (lower is better) Translates to: SRSRVSEEVGGG*VLNSTRGEWSL Trigger: GAGACTCCACTCACCCCGTGTGCTGTTCAGCACCCAGCCTCCACCCACCTCTTCAGACACTCTGGATCTAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS CCA 72 bp | ACACTGACACTGTCACACACTGAGAACTCCCCCATGTaGAAGACTGGGTGGGTGGATGAGCGCTTGCTCCGG | + |
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Preference number: 6 (lower is better) Translates to: TLTLSHTENSPM*KTGWVDERLLR Trigger: CCGGAGCAAGCGCTCATCCACCCACCCAGTCTTCCACATGGGGGAGTTCTCAGTGTGTGACAGTGTCAGTGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS GCA 72 bp | TCGTGGTGCAGTATGAGTTCCAGTGTTTGGAGTCGATaGCCCGGCACCCACTCTCAACAGGATTGGAGGCTC | + |
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Preference number: 6 (lower is better) Translates to: SWCSMSSSVWSR*PGTHSQQDWRL Trigger: GAGCCTCCAATCCTGTTGAGAGTGGGTGCCGGGGCATCGACTCCAAACACTGGAACTCATACTGCACCACGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS GCA 72 bp | CTGCACGACCACAGGCCAAAACTCCGAGGCTACTTGTaGTCAGGGACAAAGTGGCAAACTGCAGCTTCGCCA | + |
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Preference number: 6 (lower is better) Translates to: LHDHRPKLRGYL*SGTKWQTAASP Trigger: TGGCGAAGCTGCAGTTTGCCACTTTGTCCCTGAGCACAAGTAGCCTCGGAGTTTTGGCCTGTGGTCGTGCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198644.2 |
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| CDS CCA 72 bp | GGTGGAGGCTGGGTGCTGAACAGCACACGGGGTGAGTaGAGTCTCCGTTTCTTAAACAGTCTGGGGTCTACA | + |
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Preference number: 6 (lower is better) Translates to: GGGWVLNSTRGE*SLRFLNSLGST Trigger: TGTAGACCCCAGACTGTTTAAGAAACGGAGACTCCACTCACCCCGTGTGCTGTTCAGCACCCAGCCTCCACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS CAA 72 bp | GGACTGCACGACCACAGGCCAAAACTCCGAGGCTACTaGTGCTCAGGGACAAAGTGGCAAACTGCAGCTTCG | + |
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Preference number: 6 (lower is better) Translates to: GLHDHRPKLRGY*CSGTKWQTAAS Trigger: CGAAGCTGCAGTTTGCCACTTTGTCCCTGAGCACAAGTAGCCTCGGAGTTTTGGCCTGTGGTCGTGCAGTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198644.2 |
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| CDS CAA 90 bp | GAGTGGAGTCTCCGTTTCTTAAACAGTCTGGGGTCTACAGTGATGTaGCGGGTCTGCCCTGTCACTCGGGCAGCTATTGGTGCAGTAGGG | + |
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Preference number: 6 (lower is better) Translates to: EWSLRFLNSLGSTVM*RVCPVTRAAIGAVG Trigger: CCCTACTGCACCAATAGCTGCCCGAGTGACAGGGCAGACCCGCAACATCACTGTAGACCCCAGACTGTTTAAGAAACGGAGACTCCACTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS TCA 72 bp | GGTGGGTGGATGAGCGCTTGCTCCGGTGAGTCCTGTTaGAAGGGATTGTACCATGGGCCTGGAAGTCTAGAT | + |
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Preference number: 6 (lower is better) Translates to: GGWMSACSGESC*KGLYHGPGSLD Trigger: ATCTAGACTTCCAGGCCCATGGTACAATCCCTTTCAACAGGACTCACCGGAGCAAGCGCTCATCCACCCACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS TCA 72 bp | TGTTCACCTCGGCCAGCACTGTCACCTCCTTGCCCTTaGTGTCTGTGGCTGTGGTCTTATCTCCAACCCACA | + |
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Preference number: 6 (lower is better) Translates to: CSPRPALSPPCP*CLWLWSYLQPT Trigger: TGTGGGTTGGAGATAAGACCACAGCCACAGACATCAAGGGCAAGGAGGTGACAGTGCTGGCCGAGGTGAACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS GCA 72 bp | TTAAACAGTCTGGGGTCTACAGTGATGTTGCGGGTCTaGCCTGTCACTCGGGCAGCTATTGGTGCAGTAGGG | + |
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Preference number: 6 (lower is better) Translates to: LNSLGSTVMLRV*PVTRAAIGAVG Trigger: CCCTACTGCACCAATAGCTGCCCGAGTGACAGGGCAGACCCGCAACATCACTGTAGACCCCAGACTGTTTAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS GCA 72 bp | CAGGCTGTGTCTATCCGGATGAACCTCCAGGCAGCCTaGTTCTCATCTGTTGTCAACGCCTTGACGAAGGTG | + |
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Preference number: 6 (lower is better) Translates to: QAVSIRMNLQAA*FSSVVNALTKV Trigger: CACCTTCGTCAAGGCGTTGACAACAGATGAGAAGCAGGCTGCCTGGAGGTTCATCCGGATAGACACAGCCTG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS CCA 72 bp | AGGTGTGAGTCGTGGTGCAGTATGAGTTCCAGTGTTTaGAGTCGATGCCCCGGCACCCACTCTCAACAGGAT | + |
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Preference number: 6 (lower is better) Translates to: RCESWCSMSSSV*SRCPGTHSQQD Trigger: ATCCTGTTGAGAGTGGGTGCCGGGGCATCGACTCCAAACACTGGAACTCATACTGCACCACGACTCACACCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS CAA 72 bp | ATGTTCACCTCGGCCAGCACTGTCACCTCCTTGCCCTaGATGTCTGTGGCTGTGGTCTTATCTCCAACCCAC | + |
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Preference number: 6 (lower is better) Translates to: MFTSASTVTSLP*MSVAVVLSPTH Trigger: GTGGGTTGGAGATAAGACCACAGCCACAGACATCAAGGGCAAGGAGGTGACAGTGCTGGCCGAGGTGAACAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS TCA 72 bp | TCCAGGCAGCCTGCTTCTCATCTGTTGTCAACGCCTTaGCGAAGGTGTGAGTCGTGGTGCAGTATGAGTTCC | + |
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Preference number: 6 (lower is better) Translates to: SRQPASHLLSTP*RRCESWCSMSS Trigger: GGAACTCATACTGCACCACGACTCACACCTTCGTCAAGGCGTTGACAACAGATGAGAAGCAGGCTGCCTGGA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS CAA 72 bp | CTCCGTTTCTTAAACAGTCTGGGGTCTACAGTGATGTaGCGGGTCTGCCCTGTCACTCGGGCAGCTATTGGT | + |
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Preference number: 6 (lower is better) Translates to: LRFLNSLGSTVM*RVCPVTRAAIG Trigger: ACCAATAGCTGCCCGAGTGACAGGGCAGACCCGCAACATCACTGTAGACCCCAGACTGTTTAAGAAACGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS CAA 90 bp | CTGTTGTTAATGTTCACCTCGGCCAGCACTGTCACCTCCTTGCCCTaGATGTCTGTGGCTGTGGTCTTATCTCCAACCCACACACTGACA | + |
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Preference number: 6 (lower is better) Translates to: LLLMFTSASTVTSLP*MSVAVVLSPTHTLT Trigger: TGTCAGTGTGTGGGTTGGAGATAAGACCACAGCCACAGACATCAAGGGCAAGGAGGTGACAGTGCTGGCCGAGGTGAACATTAACAACAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS CAA 72 bp | TTGTTAATGTTCACCTCGGCCAGCACTGTCACCTCCTaGCCCTTGATGTCTGTGGCTGTGGTCTTATCTCCA | + |
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Preference number: 6 (lower is better) Translates to: LLMFTSASTVTS*PLMSVAVVLSP Trigger: TGGAGATAAGACCACAGCCACAGACATCAAGGGCAAGGAGGTGACAGTGCTGGCCGAGGTGAACATTAACAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS CAA 90 bp | AATACACTGTTGTTAATGTTCACCTCGGCCAGCACTGTCACCTCCTaGCCCTTGATGTCTGTGGCTGTGGTCTTATCTCCAACCCACACA | + |
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Preference number: 6 (lower is better) Translates to: NTLLLMFTSASTVTS*PLMSVAVVLSPTHT Trigger: TGTGTGGGTTGGAGATAAGACCACAGCCACAGACATCAAGGGCAAGGAGGTGACAGTGCTGGCCGAGGTGAACATTAACAACAGTGTATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS TCA 72 bp | TGCTTCTCATCTGTTGTCAACGCCTTGACGAAGGTGTaGGTCGTGGTGCAGTATGAGTTCCAGTGTTTGGAG | + |
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Preference number: 6 (lower is better) Translates to: CFSSVVNALTKV*VVVQYEFQCLE Trigger: CTCCAAACACTGGAACTCATACTGCACCACGACTCACACCTTCGTCAAGGCGTTGACAACAGATGAGAAGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS GCA 72 bp | GTCTCCTTCTGGGACATTGCTATCTGTGTACGGTTCTaGCTGTACGCCGATCAAAAACGCAGTGATCAGAGT | + |
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Preference number: 6 (lower is better) Translates to: VSFWDIAICVRF*LYADQKRSDQS Trigger: ACTCTGATCACTGCGTTTTTGATCGGCGTACAGGCAGAACCGTACACAGATAGCAATGTCCCAGAAGGAGAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000035952.5 ENSMUST00000106925.9 ENSMUST00000198644.2 |
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| CDS TCA 72 bp | TGTACGGTTCTGCCTGTACGCCGATCAAAAACGCAGTaGTCAGAGTGTAGAACAACATGGACATTACGCTAT | + |
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Preference number: 6 (lower is better) Translates to: CTVLPVRRSKTQ*SECRTTWTLRY Trigger: ATAGCGTAATGTCCATGTTGTTCTACACTCTGATCACTGCGTTTTTGATCGGCGTACAGGCAGAACCGTACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000106925.9 ENSMUST00000198644.2 |
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