Pregenerated sensors for NGDN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022204Ensembl transcript IDs: ENSMUST00000022815.10
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | AAGCACTTTCCACATTTCCAAGGCAAACGCCTACACACAGTGAAGTTAGAAGCACCTGACTCTGGCGAGTaGCGTGAGGGTGTCGAGCGT | + |
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Preference number: 4 (lower is better) Translates to: KHFPHFQGKRLHTVKLEAPDSGE*REGVER Trigger: ACGCTCGACACCCTCACGTCACTCGCCAGAGTCAGG...TGCTTCTAACTTCACTGTGTGTAGGCGTTTGCCTTGGAAATGTGGAAAGTGCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS-3UTR GCA 90 bp | GCACTTTCCACATTTCCAAGGCAAACGCCTACACACAGTGAAGTTAGAAGCATCACTGCAGGGTGTCCCTaGAGAGATGCTCCAGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: ALSTFPRQTPTHSEVRSITAGCP*RDAPEA Trigger: GGCCTCTGGAGCATCTCTGCAGGGACACCCTGCAGT...GATGCTTCTAACTTCACTGTGTGTAGGCGTTTGCCTTGGAAATGTGGAAAGTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS-3UTR CCA 90 bp | CACTTTCCACATTTCCAAGGCAAACGCCTACACACAGTGAAGTTAGAAGCATCCTCAGCGCCCGCCTCTTaGCTTTCTCCAGGCGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: HFPHFQGKRLHTVKLEASSAPAS*LSPGAS Trigger: AGAAGCGCCTGGAGAAAGCCAAGAGGCGGGCGCTGA...GGATGCTTCTAACTTCACTGTGTGTAGGCGTTTGCCTTGGAAATGTGGAAAGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS-3UTR GCA 90 bp | GCACTTTCCACATTTCCAAGGCAAACGCCTACACACAGTGAAGTTAGAAGCATCGAGGCTGCCTGTCACTaGCGTCTTGACCAGTTTGTC | + |
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Preference number: 4 (lower is better) Translates to: ALSTFPRQTPTHSEVRSIEAACH*RLDQFV Trigger: GACAAACTGGTCAAGACGGCAGTGACAGGCAGCCTC...GATGCTTCTAACTTCACTGTGTGTAGGCGTTTGCCTTGGAAATGTGGAAAGTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS-3UTR GCA 90 bp | AGTAAAGCACTTTCCACATTTCCAAGGCAAACGCCTACACACAGTGAAGTTAGATTCTCCAGGCGCTTCTaGTCCCGCTCAGCCTCAGTC | + |
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Preference number: 4 (lower is better) Translates to: SKALSTFPRQTPTHSEVRFSRRF*SRSASV Trigger: GACTGAGGCTGAGCGGGAGCAGAAGCGCCTGGAGAA...TCTAACTTCACTGTGTGTAGGCGTTTGCCTTGGAAATGTGGAAAGTGCTTTACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS-3UTR CCA 90 bp | GCACTTTCCACATTTCCAAGGCAAACGCCTACACACAGTGAAGTTAGAAGCATCCTCATCGTAATGTACTaGAACCAAGCGTGGCGGGAC | + |
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Preference number: 4 (lower is better) Translates to: ALSTFPRQTPTHSEVRSILIVMY*NQAWRD Trigger: GTCCCGCCACGCTTGGTTCCAGTACATTACGATGAG...GATGCTTCTAACTTCACTGTGTGTAGGCGTTTGCCTTGGAAATGTGGAAAGTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS-3UTR TCA 90 bp | TTATTATTTAGTAAAGCACTTTCCACATTTCCAAGGCAAACGCCTACACACAGTGCGGGTCATTCTCACTaGGGCTGCCTGTCACTGCCG | + |
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Preference number: 4 (lower is better) Translates to: LLFSKALSTFPRQTPTHSAGHSH*GCLSLP Trigger: CGGCAGTGACAGGCAGCCTCAGTGAGAATGACCCGC...ACTGTGTGTAGGCGTTTGCCTTGGAAATGTGGAAAGTGCTTTACTAAATAATAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS-3UTR TCA 90 bp | AGTAAAGCACTTTCCACATTTCCAAGGCAAACGCCTACACACAGTGAAGTTAGACTTGGATTTGTGCAGTaGCAGCCATCACCTGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: SKALSTFPRQTPTHSEVRLGFVQ*QPSPAP Trigger: AGGAGCAGGTGATGGCTGTCACTGCACAAATCCAAG...TCTAACTTCACTGTGTGTAGGCGTTTGCCTTGGAAATGTGGAAAGTGCTTTACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS-3UTR TCA 90 bp | TTATTTAGTAAAGCACTTTCCACATTTCCAAGGCAAACGCCTACACACAGTGAATTCCTCTGGGGCGTCTaGGTACTGCTCCTTCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: LFSKALSTFPRQTPTHSEFLWGV*VLLLQL Trigger: GAGCTGAAGGAGCAGTACTCAGACGCCCCAGAGGAA...TTCACTGTGTGTAGGCGTTTGCCTTGGAAATGTGGAAAGTGCTTTACTAAATAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS-3UTR TCA 90 bp | AAGCACTTTCCACATTTCCAAGGCAAACGCCTACACACAGTGAAGTTAGAAGCATGCTCTCTTCATAGTTaGCCCTGTGCTGATCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: KHFPHFQGKRLHTVKLEACSLHS*PCADPP Trigger: AGGAGGATCAGCACAGGGTCAACTATGAAGAGAGCA...TGCTTCTAACTTCACTGTGTGTAGGCGTTTGCCTTGGAAATGTGGAAAGTGCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS-3UTR GCA 90 bp | CACTTTCCACATTTCCAAGGCAAACGCCTACACACAGTGAAGTTAGAAGCATCCGTGACAGCCATCACCTaGTCCTGGAGGTTTTTCAAA | + |
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Preference number: 4 (lower is better) Translates to: HFPHFQGKRLHTVKLEASVTAIT*SWRFFK Trigger: TTTGAAAAACCTCCAGGAGCAGGTGATGGCTGTCAC...GGATGCTTCTAACTTCACTGTGTGTAGGCGTTTGCCTTGGAAATGTGGAAAGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS-3UTR GCA 90 bp | AAGCACTTTCCACATTTCCAAGGCAAACGCCTACACACAGTGAAGTTAGAAGCACAGTGCTTGGATTTGTaGAGTGACAGCCATCACCTG | + |
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Preference number: 4 (lower is better) Translates to: KHFPHFQGKRLHTVKLEAQCLDL*SDSHHL Trigger: CAGGTGATGGCTGTCACTGCACAAATCCAAGCACTG...TGCTTCTAACTTCACTGTGTGTAGGCGTTTGCCTTGGAAATGTGGAAAGTGCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS-3UTR GCA 90 bp | AAAGCACTTTCCACATTTCCAAGGCAAACGCCTACACACAGTGAAGTTAGAAGCAGACTGGCCCTCTTCTaGTTCACTTTCCTCCTCATC | + |
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Preference number: 4 (lower is better) Translates to: KALSTFPRQTPTHSEVRSRLALF*FTFLLI Trigger: GATGAGGAGGAAAGTGAAGCAGAAGAGGGCCAGTCT...GCTTCTAACTTCACTGTGTGTAGGCGTTTGCCTTGGAAATGTGGAAAGTGCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS-3UTR CCA 90 bp | AAAGCACTTTCCACATTTCCAAGGCAAACGCCTACACACAGTGAAGTTAGAAGCTACTGGAACCAAGCGTaGCGGGACGTATTTCTTAGC | + |
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Preference number: 4 (lower is better) Translates to: KALSTFPRQTPTHSEVRSYWNQA*RDVFLS Trigger: GCTAAGAAATACGTCCCGCCACGCTTGGTTCCAGTA...GCTTCTAACTTCACTGTGTGTAGGCGTTTGCCTTGGAAATGTGGAAAGTGCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS-3UTR TCA 90 bp | TATTATTTAGTAAAGCACTTTCCACATTTCCAAGGCAAACGCCTACACACAGTGACCATGTTGCTGGGATaGGGCTTAAAACGGAGCGGG | + |
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Preference number: 4 (lower is better) Translates to: YYLVKHFPHFQGKRLHTVTMLLG*GLKRSG Trigger: CCCGCTCCGTTTTAAGCCTCATCCCAGCAACATGGT...CACTGTGTGTAGGCGTTTGCCTTGGAAATGTGGAAAGTGCTTTACTAAATAATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS-3UTR CCA 90 bp | GCACTTTCCACATTTCCAAGGCAAACGCCTACACACAGTGAAGTTAGAAGCATCGCCATCACCTGCTCCTaGAGGTTTTTCAAAAGTGTT | + |
|
Preference number: 4 (lower is better) Translates to: ALSTFPRQTPTHSEVRSIAITCS*RFFKSV Trigger: AACACTTTTGAAAAACCTCCAGGAGCAGGTGATGGC...GATGCTTCTAACTTCACTGTGTGTAGGCGTTTGCCTTGGAAATGTGGAAAGTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS-3UTR TCA 90 bp | GCACTTTCCACATTTCCAAGGCAAACGCCTACACACAGTGAAGTTAGAAGCATCACCAGTTTGTCAATTTaGTACTTCAGTTTTTGGTCC | + |
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Preference number: 4 (lower is better) Translates to: ALSTFPRQTPTHSEVRSITSLSI*YFSFWS Trigger: GGACCAAAAACTGAAGTATCAAATTGACAAACTGGT...GATGCTTCTAACTTCACTGTGTGTAGGCGTTTGCCTTGGAAATGTGGAAAGTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS-3UTR GCA 90 bp | TATTTAGTAAAGCACTTTCCACATTTCCAAGGCAAACGCCTACACACAGTGAAGAACTTTTGTCGTCAGTaGTTGGATTTGTGCAGTGAC | + |
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Preference number: 4 (lower is better) Translates to: YLVKHFPHFQGKRLHTVKNFCRQ*LDLCSD Trigger: GTCACTGCACAAATCCAAGCACTGACGACAAAAGTT...CTTCACTGTGTGTAGGCGTTTGCCTTGGAAATGTGGAAAGTGCTTTACTAAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS-3UTR GCA 90 bp | TTTTATTATTTAGTAAAGCACTTTCCACATTTCCAAGGCAAACGCCTACACACACCTCAGAGCTCAACTTaGTCACCATGTTGCTGGGAT | + |
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Preference number: 4 (lower is better) Translates to: FYYLVKHFPHFQGKRLHTPQSST*SPCCWD Trigger: ATCCCAGCAACATGGTGAGCAAGTTGAGCTCTGAGG...TGTGTGTAGGCGTTTGCCTTGGAAATGTGGAAAGTGCTTTACTAAATAATAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS-3UTR CCA 90 bp | TATTTAGTAAAGCACTTTCCACATTTCCAAGGCAAACGCCTACACACAGTGAAGTACATGAGCAACAGCTaGTCTTTCACTTCCAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: YLVKHFPHFQGKRLHTVKYMSNS*SFTSKK Trigger: CTTCTTGGAAGTGAAAGACCAGCTGTTGCTCATGTA...CTTCACTGTGTGTAGGCGTTTGCCTTGGAAATGTGGAAAGTGCTTTACTAAATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS-3UTR CCA 90 bp | TTATTATTTAGTAAAGCACTTTCCACATTTCCAAGGCAAACGCCTACACACAGTTTGTCCAGGATGAGGTaGCTCAGATCCATAAGGTAC | + |
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Preference number: 4 (lower is better) Translates to: LLFSKALSTFPRQTPTHSLSRMR*LRSIRY Trigger: GTACCTTATGGATCTGAGCCACCTCATCCTGGACAA...ACTGTGTGTAGGCGTTTGCCTTGGAAATGTGGAAAGTGCTTTACTAAATAATAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS-3UTR TCA 90 bp | TTTTATTATTTAGTAAAGCACTTTCCACATTTCCAAGGCAAACGCCTACACACAGACGTATTTCTTAGCTaGGCCTTTTGCCGATTTCTT | + |
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Preference number: 4 (lower is better) Translates to: FYYLVKHFPHFQGKRLHTDVFLS*AFCRFL Trigger: AAGAAATCGGCAAAAGGCTCAGCTAAGAAATACGTC...TGTGTGTAGGCGTTTGCCTTGGAAATGTGGAAAGTGCTTTACTAAATAATAAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS TCA 90 bp | GGATTTCCTCTGGGGCGTCTGAGTACTGCTCCTTCAGCTCCCGGATaGCAGAGCTGCTCAGCGCCCGCCTCTTGGCTTTCTCCAGGCGCT | + |
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Preference number: 5 (lower is better) Translates to: GFPLGRLSTAPSAPG*QSCSAPASWLSPGA Trigger: AGCGCCTGGAGAAAGCCAAGAGGCGGGCGCTGAGCAGCTCTGTCATCCGGGAGCTGAAGGAGCAGTACTCAGACGCCCCAGAGGAAATCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS TCA 90 bp | AGTGACGTGAGGGTGTCGAGCGTCCCGGATTTCCTCTGGGGCGTCTaGGTACTGCTCCTTCAGCTCCCGGATGACAGAGCTGCTCAGCGC | + |
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Preference number: 5 (lower is better) Translates to: SDVRVSSVPDFLWGV*VLLLQLPDDRAAQR Trigger: GCGCTGAGCAGCTCTGTCATCCGGGAGCTGAAGGAGCAGTACTCAGACGCCCCAGAGGAAATCCGGGACGCTCGACACCCTCACGTCACT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS GCA 90 bp | GCGAATCTCCACCAGCCTCAAAACTGCAGGGTGTCCCTGCAGAGATaGTCCAGAGGCCTTGTCCAGGATGAGGTGGCTCAGATCCATAAG | + |
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Preference number: 5 (lower is better) Translates to: ANLHQPQNCRVSLQR*SRGLVQDEVAQIHK Trigger: CTTATGGATCTGAGCCACCTCATCCTGGACAAGGCCTCTGGAGCATCTCTGCAGGGACACCCTGCAGTTTTGAGGCTGGTGGAGATTCGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS GCA 90 bp | AAAACCGTGCGAATCTCCACCAGCCTCAAAACTGCAGGGTGTCCCTaGAGAGATGCTCCAGAGGCCTTGTCCAGGATGAGGTGGCTCAGA | + |
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Preference number: 5 (lower is better) Translates to: KTVRISTSLKTAGCP*RDAPEALSRMRWLR Trigger: TCTGAGCCACCTCATCCTGGACAAGGCCTCTGGAGCATCTCTGCAGGGACACCCTGCAGTTTTGAGGCTGGTGGAGATTCGCACGGTTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS TCA 90 bp | ATCGTAATGTACTGGAACCAAGCGTGGCGGGACGTATTTCTTAGCTaGGCCTTTTGCCGATTTCTTCCCCGAGGCCTCAGACTGGCCCTC | + |
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Preference number: 5 (lower is better) Translates to: IVMYWNQAWRDVFLS*AFCRFLPRGLRLAL Trigger: GAGGGCCAGTCTGAGGCCTCGGGGAAGAAATCGGCAAAAGGCTCAGCTAAGAAATACGTCCCGCCACGCTTGGTTCCAGTACATTACGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS CCA 90 bp | GGGTGTCCCTGCAGAGATGCTCCAGAGGCCTTGTCCAGGATGAGGTaGCTCAGATCCATAAGGTACATGAGCAACAGCTGGTCTTTCACT | + |
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Preference number: 5 (lower is better) Translates to: GCPCRDAPEALSRMR*LRSIRYMSNSWSFT Trigger: AGTGAAAGACCAGCTGTTGCTCATGTACCTTATGGATCTGAGCCACCTCATCCTGGACAAGGCCTCTGGAGCATCTCTGCAGGGACACCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS TCA 90 bp | GGTAGCTTCTTCCTCTTTTTAACAGGATTCTGGTCCTCATCGAGATaGGCAGTGCCCCCTGTCAGAGCACTGATGTCACTGAAGTGTGTG | + |
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Preference number: 5 (lower is better) Translates to: GSFFLFLTGFWSSSR*AVPPVRALMSLKCV Trigger: CACACACTTCAGTGACATCAGTGCTCTGACAGGGGGCACTGCTCATCTCGATGAGGACCAGAATCCTGTTAAAAAGAGGAAGAAGCTACC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS GCA 90 bp | ACCCTTCTCTGTAGAATACGTTCCAGCTCGAACTTTTGTCGTCAGTaGTTGGATTTGTGCAGTGACAGCCATCACCTGCTCCTGGAGGTT | + |
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Preference number: 5 (lower is better) Translates to: TLLCRIRSSSNFCRQ*LDLCSDSHHLLLEV Trigger: AACCTCCAGGAGCAGGTGATGGCTGTCACTGCACAAATCCAAGCACTGACGACAAAAGTTCGAGCTGGAACGTATTCTACAGAGAAGGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS-3UTR CAA 90 bp | AGTAAAGCACTTTCCACATTTCCAAGGCAAACGCCTACACACAGTGAAGTTAGAGATGCTCCAGAGGCCTaGTCCAGGATGAGGTGGCTC | + |
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Preference number: 5 (lower is better) Translates to: SKALSTFPRQTPTHSEVRDAPEA*SRMRWL Trigger: GAGCCACCTCATCCTGGACAAGGCCTCTGGAGCATC...TCTAACTTCACTGTGTGTAGGCGTTTGCCTTGGAAATGTGGAAAGTGCTTTACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS CCA 90 bp | TTCTCTGTAGAATACGTTCCAGCTCGAACTTTTGTCGTCAGTGCTTaGATTTGTGCAGTGACAGCCATCACCTGCTCCTGGAGGTTTTTC | + |
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Preference number: 5 (lower is better) Translates to: FSVEYVPARTFVVSA*ICAVTAITCSWRFF Trigger: GAAAAACCTCCAGGAGCAGGTGATGGCTGTCACTGCACAAATCCAAGCACTGACGACAAAAGTTCGAGCTGGAACGTATTCTACAGAGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS-3UTR CAA 90 bp | AGTAAAGCACTTTCCACATTTCCAAGGCAAACGCCTACACACAGTGAAGTTAGACGTCAGTGCTTGGATTaGTGCAGTGACAGCCATCAC | + |
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Preference number: 5 (lower is better) Translates to: SKALSTFPRQTPTHSEVRRQCLD*CSDSHH Trigger: GTGATGGCTGTCACTGCACAAATCCAAGCACTGACG...TCTAACTTCACTGTGTGTAGGCGTTTGCCTTGGAAATGTGGAAAGTGCTTTACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS-3UTR CAA 90 bp | AGTAAAGCACTTTCCACATTTCCAAGGCAAACGCCTACACACAGTGAAGTTAGAAGTCCTTTCTCTCGCTaGCTAACACTTAAGCGCACC | + |
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Preference number: 5 (lower is better) Translates to: SKALSTFPRQTPTHSEVRSPFSR*LTLKRT Trigger: GGTGCGCTTAAGTGTTAGCAAGCGAGAGAAAGGACT...TCTAACTTCACTGTGTGTAGGCGTTTGCCTTGGAAATGTGGAAAGTGCTTTACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS-3UTR CAA 90 bp | AAAGCACTTTCCACATTTCCAAGGCAAACGCCTACACACAGTGAAGTTAGAAGCTTCCAGCTCGAACTTTaGTCGTCAGTGCTTGGATTT | + |
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Preference number: 5 (lower is better) Translates to: KALSTFPRQTPTHSEVRSFQLEL*SSVLGF Trigger: AAATCCAAGCACTGACGACAAAAGTTCGAGCTGGAA...GCTTCTAACTTCACTGTGTGTAGGCGTTTGCCTTGGAAATGTGGAAAGTGCTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS-3UTR CAA 90 bp | TATTATTTAGTAAAGCACTTTCCACATTTCCAAGGCAAACGCCTACACACAGTGTCCTCAGAGCTCAACTaGCTCACCATGTTGCTGGGA | + |
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Preference number: 5 (lower is better) Translates to: YYLVKHFPHFQGKRLHTVSSELN*LTMLLG Trigger: TCCCAGCAACATGGTGAGCAAGTTGAGCTCTGAGGA...CACTGTGTGTAGGCGTTTGCCTTGGAAATGTGGAAAGTGCTTTACTAAATAATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS-3UTR CAA 90 bp | TTATTTAGTAAAGCACTTTCCACATTTCCAAGGCAAACGCCTACACACAGTGAATTGATACTTCAGTTTTaGGTCCAAAGGACGAAGTTT | + |
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Preference number: 5 (lower is better) Translates to: LFSKALSTFPRQTPTHSELILQF*VQRTKF Trigger: AAACTTCGTCCTTTGGACCAAAAACTGAAGTATCAA...TTCACTGTGTGTAGGCGTTTGCCTTGGAAATGTGGAAAGTGCTTTACTAAATAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS TCA 72 bp | CTGGGGCGTCTGAGTACTGCTCCTTCAGCTCCCGGATaGCAGAGCTGCTCAGCGCCCGCCTCTTGGCTTTCT | + |
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Preference number: 6 (lower is better) Translates to: LGRLSTAPSAPG*QSCSAPASWLS Trigger: AGAAAGCCAAGAGGCGGGCGCTGAGCAGCTCTGTCATCCGGGAGCTGAAGGAGCAGTACTCAGACGCCCCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS GCA 72 bp | CGAGCGTCCCGGATTTCCTCTGGGGCGTCTGAGTACTaGTCCTTCAGCTCCCGGATGACAGAGCTGCTCAGC | + |
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Preference number: 6 (lower is better) Translates to: RASRISSGASEY*SFSSRMTELLS Trigger: GCTGAGCAGCTCTGTCATCCGGGAGCTGAAGGAGCAGTACTCAGACGCCCCAGAGGAAATCCGGGACGCTCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS TCA 72 bp | AGGGTGTCGAGCGTCCCGGATTTCCTCTGGGGCGTCTaGGTACTGCTCCTTCAGCTCCCGGATGACAGAGCT | + |
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Preference number: 6 (lower is better) Translates to: RVSSVPDFLWGV*VLLLQLPDDRA Trigger: AGCTCTGTCATCCGGGAGCTGAAGGAGCAGTACTCAGACGCCCCAGAGGAAATCCGGGACGCTCGACACCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS GCA 72 bp | CACCAGCCTCAAAACTGCAGGGTGTCCCTGCAGAGATaGTCCAGAGGCCTTGTCCAGGATGAGGTGGCTCAG | + |
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Preference number: 6 (lower is better) Translates to: HQPQNCRVSLQR*SRGLVQDEVAQ Trigger: CTGAGCCACCTCATCCTGGACAAGGCCTCTGGAGCATCTCTGCAGGGACACCCTGCAGTTTTGAGGCTGGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS GCA 72 bp | CGAATCTCCACCAGCCTCAAAACTGCAGGGTGTCCCTaGAGAGATGCTCCAGAGGCCTTGTCCAGGATGAGG | + |
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Preference number: 6 (lower is better) Translates to: RISTSLKTAGCP*RDAPEALSRMR Trigger: CCTCATCCTGGACAAGGCCTCTGGAGCATCTCTGCAGGGACACCCTGCAGTTTTGAGGCTGGTGGAGATTCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS CAA 72 bp | ATGGCGCTCGCTCGCCTTCGCAGTCCTTTCTCTCGCTaGCTAACACTTAAGCGCACCATCATGCTCTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: MALARLRSPFSR*LTLKRTIMLSS Trigger: TGAAGAGAGCATGATGGTGCGCTTAAGTGTTAGCAAGCGAGAGAAAGGACTGCGAAGGCGAGCGAGCGCCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS CCA 72 bp | GAATACGTTCCAGCTCGAACTTTTGTCGTCAGTGCTTaGATTTGTGCAGTGACAGCCATCACCTGCTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: EYVPARTFVVSA*ICAVTAITCSW Trigger: CCAGGAGCAGGTGATGGCTGTCACTGCACAAATCCAAGCACTGACGACAAAAGTTCGAGCTGGAACGTATTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS TCA 72 bp | TTCCTCTTTTTAACAGGATTCTGGTCCTCATCGAGATaGGCAGTGCCCCCTGTCAGAGCACTGATGTCACTG | + |
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Preference number: 6 (lower is better) Translates to: FLFLTGFWSSSR*AVPPVRALMSL Trigger: CAGTGACATCAGTGCTCTGACAGGGGGCACTGCTCATCTCGATGAGGACCAGAATCCTGTTAAAAAGAGGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS CAA 72 bp | AGAATACGTTCCAGCTCGAACTTTTGTCGTCAGTGCTaGGATTTGTGCAGTGACAGCCATCACCTGCTCCTG | + |
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Preference number: 6 (lower is better) Translates to: RIRSSSNFCRQC*DLCSDSHHLLL Trigger: CAGGAGCAGGTGATGGCTGTCACTGCACAAATCCAAGCACTGACGACAAAAGTTCGAGCTGGAACGTATTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS GCA 72 bp | TGTAGAATACGTTCCAGCTCGAACTTTTGTCGTCAGTaGTTGGATTTGTGCAGTGACAGCCATCACCTGCTC | + |
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Preference number: 6 (lower is better) Translates to: CRIRSSSNFCRQ*LDLCSDSHHLL Trigger: GAGCAGGTGATGGCTGTCACTGCACAAATCCAAGCACTGACGACAAAAGTTCGAGCTGGAACGTATTCTACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS CAA 90 bp | CTTCTCTGTAGAATACGTTCCAGCTCGAACTTTTGTCGTCAGTGCTaGGATTTGTGCAGTGACAGCCATCACCTGCTCCTGGAGGTTTTT | + |
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Preference number: 6 (lower is better) Translates to: LLCRIRSSSNFCRQC*DLCSDSHHLLLEVF Trigger: AAAAACCTCCAGGAGCAGGTGATGGCTGTCACTGCACAAATCCAAGCACTGACGACAAAAGTTCGAGCTGGAACGTATTCTACAGAGAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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| CDS TCA 72 bp | CTGCCTGTCACTGCCGTCTTGACCAGTTTGTCAATTTaGTACTTCAGTTTTTGGTCCAAAGGACGAAGTTTT | + |
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Preference number: 6 (lower is better) Translates to: LPVTAVLTSLSI*YFSFWSKGRSF Trigger: AAAACTTCGTCCTTTGGACCAAAAACTGAAGTATCAAATTGACAAACTGGTCAAGACGGCAGTGACAGGCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022815.10 |
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