Pregenerated sensors for NFYC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032897Ensembl transcript IDs: ENSMUST00000043429.12, ENSMUST00000118902.8, ENSMUST00000120779.8
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTCCTGGGTCTGGAGAGAAGGGACGGGGAGGAGACCAGCTCTCTGTaGAGAATGAGTTCATGGCCCACAGGCAGGAAATGTTTCCACATC | + |
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Preference number: 1 (lower is better) Translates to: LLGLERRDGEETSSL*RMSSWPTGRKCFHI Trigger: GATGTGGAAACATTTCCTGCCTGTGGGCCATGAACTCATTCTCCACAGAGAGCTGGTCTCCTCCCCGTCCCTTCTCTCCAGACCCAGGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| 3UTR CCA 90 bp | AAACAGTGGCCAGAGCAGTGCACAAAGTCCTGGTTCTCAAAGTCCTaGTTCTCCTGGGTCTGGAGAGAAGGGACGGGGAGGAGACCAGCT | + |
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Preference number: 1 (lower is better) Translates to: KQWPEQCTKSWFSKS*FSWVWREGTGRRPA Trigger: AGCTGGTCTCCTCCCCGTCCCTTCTCTCCAGACCCAGGAGAACCAGGACTTTGAGAACCAGGACTTTGTGCACTGCTCTGGCCACTGTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| 3UTR TCA 90 bp | GTCTGGAGAGAAGGGACGGGGAGGAGACCAGCTCTCTGTGGAGAATaGGTTCATGGCCCACAGGCAGGAAATGTTTCCACATCTTCTGGA | + |
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Preference number: 1 (lower is better) Translates to: VWREGTGRRPALCGE*VHGPQAGNVSTSSG Trigger: TCCAGAAGATGTGGAAACATTTCCTGCCTGTGGGCCATGAACTCATTCTCCACAGAGAGCTGGTCTCCTCCCCGTCCCTTCTCTCCAGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| 3UTR GCA 90 bp | CTTAGGAAGGAAGAGCACAGGCCGCCCCTTAGCAGTGGTGGAGAGTaGCCAAGCCAGGAAACACACAAGAGAATTATTTCTTCAACCACA | + |
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Preference number: 1 (lower is better) Translates to: LRKEEHRPPLSSGGE*PSQETHKRIISSTT Trigger: TGTGGTTGAAGAAATAATTCTCTTGTGTGTTTCCTGGCTTGGGCACTCTCCACCACTGCTAAGGGGCGGCCTGTGCTCTTCCTTCCTAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| 3UTR CCA 90 bp | AGAATGAGTTCATGGCCCACAGGCAGGAAATGTTTCCACATCTTCTaGATTCGGAAGGTTCTGGGGAAGGGGCAGAGAAGAATGCTGGTG | + |
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Preference number: 1 (lower is better) Translates to: RMSSWPTGRKCFHIF*IRKVLGKGQRRMLV Trigger: CACCAGCATTCTTCTCTGCCCCTTCCCCAGAACCTTCCGAATCCAGAAGATGTGGAAACATTTCCTGCCTGTGGGCCATGAACTCATTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| 3UTR-3UTR GCA 90 bp | ACCAGCTCTCTGTGGAGAATGAGTTCATGGCCCACAGGCAGGAAATGTTTCCACAGCAGTGGTGGAGAGTaGCCAAGCCAGGAAACACAC | + |
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Preference number: 2 (lower is better) Translates to: TSSLWRMSSWPTGRKCFHSSGGE*PSQETH Trigger: GTGTGTTTCCTGGCTTGGGCACTCTCCACCACTGCT...GTGGAAACATTTCCTGCCTGTGGGCCATGAACTCATTCTCCACAGAGAGCTGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| 3UTR-3UTR GCA 90 bp | AATGAGTTCATGGCCCACAGGCAGGAAATGTTTCCACATCTTCTGGATTCGGAAAGCAGTGGTGGAGAGTaGCCAAGCCAGGAAACACAC | + |
|
Preference number: 2 (lower is better) Translates to: NEFMAHRQEMFPHLLDSESSGGE*PSQETH Trigger: GTGTGTTTCCTGGCTTGGGCACTCTCCACCACTGCT...TTCCGAATCCAGAAGATGTGGAAACATTTCCTGCCTGTGGGCCATGAACTCATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| 3UTR CCA 72 bp | CTGGAGAGAAGGGACGGGGAGGAGACCAGCTCTCTGTaGAGAATGAGTTCATGGCCCACAGGCAGGAAATGT | + |
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Preference number: 3 (lower is better) Translates to: LERRDGEETSSL*RMSSWPTGRKC Trigger: ACATTTCCTGCCTGTGGGCCATGAACTCATTCTCCACAGAGAGCTGGTCTCCTCCCCGTCCCTTCTCTCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| 3UTR CCA 72 bp | AAGTCCTGGTTCTCAAAGTCCTGGTTCTCCTGGGTCTaGAGAGAAGGGACGGGGAGGAGACCAGCTCTCTGT | + |
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Preference number: 3 (lower is better) Translates to: KSWFSKSWFSWV*REGTGRRPALC Trigger: ACAGAGAGCTGGTCTCCTCCCCGTCCCTTCTCTCCAGACCCAGGAGAACCAGGACTTTGAGAACCAGGACTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| 3UTR CCA 72 bp | TGCACAAAGTCCTGGTTCTCAAAGTCCTGGTTCTCCTaGGTCTGGAGAGAAGGGACGGGGAGGAGACCAGCT | + |
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Preference number: 3 (lower is better) Translates to: CTKSWFSKSWFS*VWREGTGRRPA Trigger: AGCTGGTCTCCTCCCCGTCCCTTCTCTCCAGACCCAGGAGAACCAGGACTTTGAGAACCAGGACTTTGTGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| 3UTR TCA 72 bp | GAAGGGACGGGGAGGAGACCAGCTCTCTGTGGAGAATaGGTTCATGGCCCACAGGCAGGAAATGTTTCCACA | + |
|
Preference number: 3 (lower is better) Translates to: EGTGRRPALCGE*VHGPQAGNVST Trigger: TGTGGAAACATTTCCTGCCTGTGGGCCATGAACTCATTCTCCACAGAGAGCTGGTCTCCTCCCCGTCCCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| 3UTR CCA 72 bp | GGGGAGGAGACCAGCTCTCTGTGGAGAATGAGTTCATaGCCCACAGGCAGGAAATGTTTCCACATCTTCTGG | + |
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Preference number: 3 (lower is better) Translates to: GEETSSLWRMSS*PTGRKCFHIFW Trigger: CCAGAAGATGTGGAAACATTTCCTGCCTGTGGGCCATGAACTCATTCTCCACAGAGAGCTGGTCTCCTCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| 3UTR GCA 72 bp | GAAGAGCACAGGCCGCCCCTTAGCAGTGGTGGAGAGTaGCCAAGCCAGGAAACACACAAGAGAATTATTTCT | + |
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Preference number: 3 (lower is better) Translates to: EEHRPPLSSGGE*PSQETHKRIIS Trigger: AGAAATAATTCTCTTGTGTGTTTCCTGGCTTGGGCACTCTCCACCACTGCTAAGGGGCGGCCTGTGCTCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| 3UTR CCA 72 bp | TCATGGCCCACAGGCAGGAAATGTTTCCACATCTTCTaGATTCGGAAGGTTCTGGGGAAGGGGCAGAGAAGA | + |
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Preference number: 3 (lower is better) Translates to: SWPTGRKCFHIF*IRKVLGKGQRR Trigger: TCTTCTCTGCCCCTTCCCCAGAACCTTCCGAATCCAGAAGATGTGGAAACATTTCCTGCCTGTGGGCCATGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| 3UTR CCA 72 bp | AAAATAAAACAGTGGCCAGAGCAGTGCACAAAGTCCTaGTTCTCAAAGTCCTGGTTCTCCTGGGTCTGGAGA | + |
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Preference number: 3 (lower is better) Translates to: KIKQWPEQCTKS*FSKSWFSWVWR Trigger: TCTCCAGACCCAGGAGAACCAGGACTTTGAGAACCAGGACTTTGTGCACTGCTCTGGCCACTGTTTTATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR CCA 90 bp | GACGGGGAGGAGACCAGCTCTCTGTGGAGAATGAGTTCATGGCCCACAGGCAGGCAGTCTCCAGTCACCTaGGGGGTCTGCCCATCAGAG | + |
|
Preference number: 4 (lower is better) Translates to: DGEETSSLWRMSSWPTGRQSPVT*GVCPSE Trigger: CTCTGATGGGCAGACCCCCCAGGTGACTGGAGACTG...CCTGCCTGTGGGCCATGAACTCATTCTCCACAGAGAGCTGGTCTCCTCCCCGTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR GCA 90 bp | GACGGGGAGGAGACCAGCTCTCTGTGGAGAATGAGTTCATGGCCCACAGGCAGGATCTGCTGCATCACCTaGATGGTCTGTCCAGTGCCA | + |
|
Preference number: 4 (lower is better) Translates to: DGEETSSLWRMSSWPTGRICCIT*MVCPVP Trigger: TGGCACTGGACAGACCATGCAGGTGATGCAGCAGAT...CCTGCCTGTGGGCCATGAACTCATTCTCCACAGAGAGCTGGTCTCCTCCCCGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR CCA 90 bp | ACCAGCTCTCTGTGGAGAATGAGTTCATGGCCCACAGGCAGGAAATGTTTCCACGGCTGGGCGAGGTCTTaGCCTGCAGGCATGGTGACT | + |
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Preference number: 4 (lower is better) Translates to: TSSLWRMSSWPTGRKCFHGWARS*PAGMVT Trigger: AGTCACCATGCCTGCAGGCCAAGACCTCGCCCAGCC...GTGGAAACATTTCCTGCCTGTGGGCCATGAACTCATTCTCCACAGAGAGCTGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR GCA 90 bp | TCCACATCTTCTGGATTCGGAAGGTTCTGGGGAAGGGGCAGAGAAGAATGCTGGTGGCCAGCATTCAGCTaGACCGGGATCTGCTGGATC | + |
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Preference number: 4 (lower is better) Translates to: STSSGFGRFWGRGREECWWPAFS*TGICWI Trigger: GATCCAGCAGATCCCGGTGCAGCTGAATGCTGGCCA...CCAGCATTCTTCTCTGCCCCTTCCCCAGAACCTTCCGAATCCAGAAGATGTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR GCA 90 bp | GACGGGGAGGAGACCAGCTCTCTGTGGAGAATGAGTTCATGGCCCACAGGCAGGTTGGTAATGATCTGCTaGATCACCTGCATGGTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: DGEETSSLWRMSSWPTGRLVMIC*ITCMVC Trigger: ACAGACCATGCAGGTGATGCAGCAGATCATTACCAA...CCTGCCTGTGGGCCATGAACTCATTCTCCACAGAGAGCTGGTCTCCTCCCCGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR CCA 90 bp | TTTCCACATCTTCTGGATTCGGAAGGTTCTGGGGAAGGGGCAGAGAAGAATGCTCAGTCTCCAGTCACCTaGGGGGTCTGCCCATCAGAG | + |
|
Preference number: 4 (lower is better) Translates to: FPHLLDSEGSGEGAEKNAQSPVT*GVCPSE Trigger: CTCTGATGGGCAGACCCCCCAGGTGACTGGAGACTG...AGCATTCTTCTCTGCCCCTTCCCCAGAACCTTCCGAATCCAGAAGATGTGGAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR GCA 90 bp | TTTCCACATCTTCTGGATTCGGAAGGTTCTGGGGAAGGGGCAGAGAAGAATGCTTGGCCAGCATTCAGCTaGACCGGGATCTGCTGGATC | + |
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Preference number: 4 (lower is better) Translates to: FPHLLDSEGSGEGAEKNAWPAFS*TGICWI Trigger: GATCCAGCAGATCCCGGTGCAGCTGAATGCTGGCCA...AGCATTCTTCTCTGCCCCTTCCCCAGAACCTTCCGAATCCAGAAGATGTGGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR GCA 90 bp | AAATGTTTCCACATCTTCTGGATTCGGAAGGTTCTGGGGAAGGGGCAGAGAAGAGGCGAGGTCTTGGCCTaGAGGCATGGTGACTTGCTG | + |
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Preference number: 4 (lower is better) Translates to: KCFHIFWIRKVLGKGQRRGEVLA*RHGDLL Trigger: CAGCAAGTCACCATGCCTGCAGGCCAAGACCTCGCC...TCTTCTCTGCCCCTTCCCCAGAACCTTCCGAATCCAGAAGATGTGGAAACATTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR CCA 90 bp | GCAGTGGTGGAGAGTGCCCAAGCCAGGAAACACACAAGAGAATTATTTCTTCAAGGCTGGGCGAGGTCTTaGCCTGCAGGCATGGTGACT | + |
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Preference number: 4 (lower is better) Translates to: AVVESAQARKHTRELFLQGWARS*PAGMVT Trigger: AGTCACCATGCCTGCAGGCCAAGACCTCGCCCAGCC...TTGAAGAAATAATTCTCTTGTGTGTTTCCTGGCTTGGGCACTCTCCACCACTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR TCA 90 bp | CCACATCTTCTGGATTCGGAAGGTTCTGGGGAAGGGGCAGAGAAGAATGCTGGTTTCGGATTTCTTCCATaGCTCTGGGCCAGAAGGACT | + |
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Preference number: 4 (lower is better) Translates to: PHLLDSEGSGEGAEKNAGFGFLP*LWARRT Trigger: AGTCCTTCTGGCCCAGAGTCATGGAAGAAATCCGAA...ACCAGCATTCTTCTCTGCCCCTTCCCCAGAACCTTCCGAATCCAGAAGATGTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR GCA 90 bp | ACCAGCTCTCTGTGGAGAATGAGTTCATGGCCCACAGGCAGGAAATGTTTCCACATCTGCTGCATCACCTaGATGGTCTGTCCAGTGCCA | + |
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Preference number: 4 (lower is better) Translates to: TSSLWRMSSWPTGRKCFHICCIT*MVCPVP Trigger: TGGCACTGGACAGACCATGCAGGTGATGCAGCAGAT...GTGGAAACATTTCCTGCCTGTGGGCCATGAACTCATTCTCCACAGAGAGCTGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR GCA 90 bp | GCAGTGGTGGAGAGTGCCCAAGCCAGGAAACACACAAGAGAATTATTTCTTCAAGGCGAGGTCTTGGCCTaGAGGCATGGTGACTTGCTG | + |
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Preference number: 4 (lower is better) Translates to: AVVESAQARKHTRELFLQGEVLA*RHGDLL Trigger: CAGCAAGTCACCATGCCTGCAGGCCAAGACCTCGCC...TTGAAGAAATAATTCTCTTGTGTGTTTCCTGGCTTGGGCACTCTCCACCACTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR CCA 90 bp | AATGAGTTCATGGCCCACAGGCAGGAAATGTTTCCACATCTTCTGGATTCGGAACAGTCTCCAGTCACCTaGGGGGTCTGCCCATCAGAG | + |
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Preference number: 4 (lower is better) Translates to: NEFMAHRQEMFPHLLDSEQSPVT*GVCPSE Trigger: CTCTGATGGGCAGACCCCCCAGGTGACTGGAGACTG...TTCCGAATCCAGAAGATGTGGAAACATTTCCTGCCTGTGGGCCATGAACTCATT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR GCA 90 bp | AATGAGTTCATGGCCCACAGGCAGGAAATGTTTCCACATCTTCTGGATTCGGAATGGCCAGCATTCAGCTaGACCGGGATCTGCTGGATC | + |
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Preference number: 4 (lower is better) Translates to: NEFMAHRQEMFPHLLDSEWPAFS*TGICWI Trigger: GATCCAGCAGATCCCGGTGCAGCTGAATGCTGGCCA...TTCCGAATCCAGAAGATGTGGAAACATTTCCTGCCTGTGGGCCATGAACTCATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR CCA 90 bp | ACCAGCTCTCTGTGGAGAATGAGTTCATGGCCCACAGGCAGGAAATGTTTCCACATGATCTGTCCAGGCTaGATGGTGGTCGTAGAACTG | + |
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Preference number: 4 (lower is better) Translates to: TSSLWRMSSWPTGRKCFHMICPG*MVVVEL Trigger: CAGTTCTACGACCACCATCCAGCCTGGACAGATCAT...GTGGAAACATTTCCTGCCTGTGGGCCATGAACTCATTCTCCACAGAGAGCTGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR CCA 90 bp | TTTCCACATCTTCTGGATTCGGAAGGTTCTGGGGAAGGGGCAGAGAAGAATGCTATGATCTGTCCAGGCTaGATGGTGGTCGTAGAACTG | + |
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Preference number: 4 (lower is better) Translates to: FPHLLDSEGSGEGAEKNAMICPG*MVVVEL Trigger: CAGTTCTACGACCACCATCCAGCCTGGACAGATCAT...AGCATTCTTCTCTGCCCCTTCCCCAGAACCTTCCGAATCCAGAAGATGTGGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR CCA 90 bp | CCACATCTTCTGGATTCGGAAGGTTCTGGGGAAGGGGCAGAGAAGAATGCTGGTTTGGTAGCAAGTGTCTaGATCTGTCCTTGGACAACT | + |
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Preference number: 4 (lower is better) Translates to: PHLLDSEGSGEGAEKNAGLVASV*ICPWTT Trigger: AGTTGTCCAAGGACAGATCCAGACACTTGCTACCAA...ACCAGCATTCTTCTCTGCCCCTTCCCCAGAACCTTCCGAATCCAGAAGATGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR TCA 90 bp | AAATGTTTCCACATCTTCTGGATTCGGAAGGTTCTGGGGAAGGGGCAGAGAAGATTCGGATTTCTTCCATaGCTCTGGGCCAGAAGGACT | + |
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Preference number: 4 (lower is better) Translates to: KCFHIFWIRKVLGKGQRRFGFLP*LWARRT Trigger: AGTCCTTCTGGCCCAGAGTCATGGAAGAAATCCGAA...TCTTCTCTGCCCCTTCCCCAGAACCTTCCGAATCCAGAAGATGTGGAAACATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR GCA 90 bp | TTTCCACATCTTCTGGATTCGGAAGGTTCTGGGGAAGGGGCAGAGAAGAATGCTGTGTTGGTAATGATCTaGTGCATCACCTGCATGGTC | + |
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Preference number: 4 (lower is better) Translates to: FPHLLDSEGSGEGAEKNAVLVMI*CITCMV Trigger: GACCATGCAGGTGATGCAGCAGATCATTACCAACAC...AGCATTCTTCTCTGCCCCTTCCCCAGAACCTTCCGAATCCAGAAGATGTGGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR TCA 90 bp | AATGAGTTCATGGCCCACAGGCAGGAAATGTTTCCACATCTTCTGGATTCGGAATTCGGATTTCTTCCATaGCTCTGGGCCAGAAGGACT | + |
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Preference number: 4 (lower is better) Translates to: NEFMAHRQEMFPHLLDSEFGFLP*LWARRT Trigger: AGTCCTTCTGGCCCAGAGTCATGGAAGAAATCCGAA...TTCCGAATCCAGAAGATGTGGAAACATTTCCTGCCTGTGGGCCATGAACTCATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR GCA 90 bp | TTTCCACATCTTCTGGATTCGGAAGGTTCTGGGGAAGGGGCAGAGAAGAATGCTTTGGTAATGATCTGCTaGATCACCTGCATGGTCTGT | + |
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Preference number: 4 (lower is better) Translates to: FPHLLDSEGSGEGAEKNALVMIC*ITCMVC Trigger: ACAGACCATGCAGGTGATGCAGCAGATCATTACCAA...AGCATTCTTCTCTGCCCCTTCCCCAGAACCTTCCGAATCCAGAAGATGTGGAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR CCA 90 bp | GCAGTGGTGGAGAGTGCCCAAGCCAGGAAACACACAAGAGAATTATTTCTTCAAATGATCTGTCCAGGCTaGATGGTGGTCGTAGAACTG | + |
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Preference number: 4 (lower is better) Translates to: AVVESAQARKHTRELFLQMICPG*MVVVEL Trigger: CAGTTCTACGACCACCATCCAGCCTGGACAGATCAT...TTGAAGAAATAATTCTCTTGTGTGTTTCCTGGCTTGGGCACTCTCCACCACTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR GCA 90 bp | AAATGTTTCCACATCTTCTGGATTCGGAAGGTTCTGGGGAAGGGGCAGAGAAGATTGGTAATGATCTGCTaGATCACCTGCATGGTCTGT | + |
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Preference number: 4 (lower is better) Translates to: KCFHIFWIRKVLGKGQRRLVMIC*ITCMVC Trigger: ACAGACCATGCAGGTGATGCAGCAGATCATTACCAA...TCTTCTCTGCCCCTTCCCCAGAACCTTCCGAATCCAGAAGATGTGGAAACATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR GCA 90 bp | AATGAGTTCATGGCCCACAGGCAGGAAATGTTTCCACATCTTCTGGATTCGGAAGTGTTGGTAATGATCTaGTGCATCACCTGCATGGTC | + |
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Preference number: 4 (lower is better) Translates to: NEFMAHRQEMFPHLLDSEVLVMI*CITCMV Trigger: GACCATGCAGGTGATGCAGCAGATCATTACCAACAC...TTCCGAATCCAGAAGATGTGGAAACATTTCCTGCCTGTGGGCCATGAACTCATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR GCA 90 bp | GCAGTGGTGGAGAGTGCCCAAGCCAGGAAACACACAAGAGAATTATTTCTTCAAGTGTTGGTAATGATCTaGTGCATCACCTGCATGGTC | + |
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Preference number: 4 (lower is better) Translates to: AVVESAQARKHTRELFLQVLVMI*CITCMV Trigger: GACCATGCAGGTGATGCAGCAGATCATTACCAACAC...TTGAAGAAATAATTCTCTTGTGTGTTTCCTGGCTTGGGCACTCTCCACCACTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR CCA 90 bp | GCAGTGGTGGAGAGTGCCCAAGCCAGGAAACACACAAGAGAATTATTTCTTCAATTGGTAGCAAGTGTCTaGATCTGTCCTTGGACAACT | + |
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Preference number: 4 (lower is better) Translates to: AVVESAQARKHTRELFLQLVASV*ICPWTT Trigger: AGTTGTCCAAGGACAGATCCAGACACTTGCTACCAA...TTGAAGAAATAATTCTCTTGTGTGTTTCCTGGCTTGGGCACTCTCCACCACTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR CAA 90 bp | TTTCCACATCTTCTGGATTCGGAAGGTTCTGGGGAAGGGGCAGAGAAGAATGCTGGGCTGGGCGAGGTCTaGGCCTGCAGGCATGGTGAC | + |
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Preference number: 5 (lower is better) Translates to: FPHLLDSEGSGEGAEKNAGLGEV*ACRHGD Trigger: GTCACCATGCCTGCAGGCCAAGACCTCGCCCAGCCC...AGCATTCTTCTCTGCCCCTTCCCCAGAACCTTCCGAATCCAGAAGATGTGGAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR CAA 90 bp | AATGAGTTCATGGCCCACAGGCAGGAAATGTTTCCACATCTTCTGGATTCGGAAGGGCTGGGCGAGGTCTaGGCCTGCAGGCATGGTGAC | + |
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Preference number: 5 (lower is better) Translates to: NEFMAHRQEMFPHLLDSEGLGEV*ACRHGD Trigger: GTCACCATGCCTGCAGGCCAAGACCTCGCCCAGCCC...TTCCGAATCCAGAAGATGTGGAAACATTTCCTGCCTGTGGGCCATGAACTCATT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR CAA 90 bp | CCACATCTTCTGGATTCGGAAGGTTCTGGGGAAGGGGCAGAGAAGAATGCTGGTGTGATCTGTTGGGCATaGGTAGCAAGTGTCTGGATC | + |
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Preference number: 5 (lower is better) Translates to: PHLLDSEGSGEGAEKNAGVICWA*VASVWI Trigger: GATCCAGACACTTGCTACCAATGCCCAACAGATCAC...ACCAGCATTCTTCTCTGCCCCTTCCCCAGAACCTTCCGAATCCAGAAGATGTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR CAA 90 bp | ACCAGCTCTCTGTGGAGAATGAGTTCATGGCCCACAGGCAGGAAATGTTTCCACGTGATCTGTTGGGCATaGGTAGCAAGTGTCTGGATC | + |
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Preference number: 5 (lower is better) Translates to: TSSLWRMSSWPTGRKCFHVICWA*VASVWI Trigger: GATCCAGACACTTGCTACCAATGCCCAACAGATCAC...GTGGAAACATTTCCTGCCTGTGGGCCATGAACTCATTCTCCACAGAGAGCTGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR CAA 90 bp | CCACATCTTCTGGATTCGGAAGGTTCTGGGGAAGGGGCAGAGAAGAATGCTGGTTGTCTGTGTGATCTGTaGGGCATTGGTAGCAAGTGT | + |
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Preference number: 5 (lower is better) Translates to: PHLLDSEGSGEGAEKNAGCLCDL*GIGSKC Trigger: ACACTTGCTACCAATGCCCAACAGATCACACAGACA...ACCAGCATTCTTCTCTGCCCCTTCCCCAGAACCTTCCGAATCCAGAAGATGTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR CAA 90 bp | TCCACATCTTCTGGATTCGGAAGGTTCTGGGGAAGGGGCAGAGAAGAATGCTGGTGTCTGTGTGATCTGTaGGGCATTGGTAGCAAGTGT | + |
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Preference number: 5 (lower is better) Translates to: STSSGFGRFWGRGREECWCLCDL*GIGSKC Trigger: ACACTTGCTACCAATGCCCAACAGATCACACAGACA...CCAGCATTCTTCTCTGCCCCTTCCCCAGAACCTTCCGAATCCAGAAGATGTGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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| CDS-3UTR CAA 90 bp | AATGAGTTCATGGCCCACAGGCAGGAAATGTTTCCACATCTTCTGGATTCGGAAGTGATCTGTTGGGCATaGGTAGCAAGTGTCTGGATC | + |
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Preference number: 5 (lower is better) Translates to: NEFMAHRQEMFPHLLDSEVICWA*VASVWI Trigger: GATCCAGACACTTGCTACCAATGCCCAACAGATCAC...TTCCGAATCCAGAAGATGTGGAAACATTTCCTGCCTGTGGGCCATGAACTCATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000043429.12 ENSMUST00000118902.8 ENSMUST00000120779.8 |
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