Pregenerated sensors for NFYB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020248Ensembl transcript IDs: ENSMUST00000130911.8
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CAGCAAACCAGAAGGCTCCCGTGCCACGTGATTCCTAGTGGTCACTaGTCCCCTGCTTGTCCACTCTCTCCTGCAGCATCTGCACAGAAC | + |
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Preference number: 1 (lower is better) Translates to: QQTRRLPCHVIPSGH*SPACPLSPAASAQN Trigger: GTTCTGTGCAGATGCTGCAGGAGAGAGTGGACAAGCAGGGGAGCAGTGACCACTAGGAATCACGTGGCACGGGAGCCTTCTGGTTTGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| 3UTR GCA 90 bp | GCTACTTATGGTACAAGGAGGCAGCTTCACCCTCACTTCCGCCCATaGCTCTGCTTCAGACTCCATCAGACTCTCTCCACACAAGCCCGG | + |
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Preference number: 1 (lower is better) Translates to: ATYGTRRQLHPHFRP*LCFRLHQTLSTQAR Trigger: CCGGGCTTGTGTGGAGAGAGTCTGATGGAGTCTGAAGCAGAGGCATGGGCGGAAGTGAGGGTGAAGCTGCCTCCTTGTACCATAAGTAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| 3UTR GCA 90 bp | CTCCCCTGCTTGTCCACTCTCTCCTGCAGCATCTGCACAGAACCATaGCCACTGCTCAGTTCCCACGGTCTAACAGGAACCCGACCTTTT | + |
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Preference number: 1 (lower is better) Translates to: LPCLSTLSCSICTEP*PLLSSHGLTGTRPF Trigger: AAAAGGTCGGGTTCCTGTTAGACCGTGGGAACTGAGCAGTGGGCATGGTTCTGTGCAGATGCTGCAGGAGAGAGTGGACAAGCAGGGGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| 3UTR TCA 90 bp | TCTCCCGTTCTTTCCTATGTGCATTTTCTACAGAAAGGTTATTACTaGAAAGGGAGTTGGAGGAAGAGGATGCTATTTAATCTCCAAATA | + |
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Preference number: 1 (lower is better) Translates to: SPVLSYVHFLQKGYY*KGSWRKRMLFNLQI Trigger: TATTTGGAGATTAAATAGCATCCTCTTCCTCCAACTCCCTTTTCAGTAATAACCTTTCTGTAGAAAATGCACATAGGAAAGAACGGGAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| 3UTR-3UTR GCA 90 bp | TGTTGGATCCTGCCTCACCATCATCTCCCGTTCTTTCCTATGTGCATTTTCTACCCTCACTTCCGCCCATaGCTCTGCTTCAGACTCCAT | + |
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Preference number: 2 (lower is better) Translates to: CWILPHHHLPFFPMCIFYPHFRP*LCFRLH Trigger: ATGGAGTCTGAAGCAGAGGCATGGGCGGAAGTGAGG...GTAGAAAATGCACATAGGAAAGAACGGGAGATGATGGTGAGGCAGGATCCAACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| 3UTR-3UTR GCA 90 bp | TGTTGGATCCTGCCTCACCATCATCTCCCGTTCTTTCCTATGTGCATTTTCTACTTCCGCCCATGCCTCTaGTTCAGACTCCATCAGACT | + |
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Preference number: 2 (lower is better) Translates to: CWILPHHHLPFFPMCIFYFRPCL*FRLHQT Trigger: AGTCTGATGGAGTCTGAAGCAGAGGCATGGGCGGAA...GTAGAAAATGCACATAGGAAAGAACGGGAGATGATGGTGAGGCAGGATCCAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| 3UTR-3UTR GCA 90 bp | TGTTGGATCCTGCCTCACCATCATCTCCCGTTCTTTCCTATGTGCATTTTCTACATCTGCACAGAACCATaGCCACTGCTCAGTTCCCAC | + |
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Preference number: 2 (lower is better) Translates to: CWILPHHHLPFFPMCIFYICTEP*PLLSSH Trigger: GTGGGAACTGAGCAGTGGGCATGGTTCTGTGCAGAT...GTAGAAAATGCACATAGGAAAGAACGGGAGATGATGGTGAGGCAGGATCCAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| 3UTR-3UTR CCA 90 bp | TGTTGGATCCTGCCTCACCATCATCTCCCGTTCTTTCCTATGTGCATTTTCTACGTTCCACAAAACTCCTaGCCAAGTGGCCATTACTGT | + |
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Preference number: 2 (lower is better) Translates to: CWILPHHHLPFFPMCIFYVPQNS*PSGHYC Trigger: ACAGTAATGGCCACTTGGCCAGGAGTTTTGTGGAAC...GTAGAAAATGCACATAGGAAAGAACGGGAGATGATGGTGAGGCAGGATCCAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| 3UTR-3UTR GCA 90 bp | AAAATATTAACATTGTTATTTCAGCACAGCAGGATGACTGTTGGATCCTGCCTCCTCTCCTGCAGCATCTaGACAGAACCATGCCCACTG | + |
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Preference number: 2 (lower is better) Translates to: KILTLLFQHSRMTVGSCLLSCSI*TEPCPL Trigger: CAGTGGGCATGGTTCTGTGCAGATGCTGCAGGAGAG...GAGGCAGGATCCAACAGTCATCCTGCTGTGCTGAAATAACAATGTTAATATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| 3UTR-3UTR TCA 90 bp | AAAATATTAACATTGTTATTTCAGCACAGCAGGATGACTGTTGGATCCTGCCTCAGGCGTGATAGTAACTaGAGCTGCCTGAACAGCCAC | + |
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Preference number: 2 (lower is better) Translates to: KILTLLFQHSRMTVGSCLRRDSN*SCLNSH Trigger: GTGGCTGTTCAGGCAGCTTCAGTTACTATCACGCCT...GAGGCAGGATCCAACAGTCATCCTGCTGTGCTGAAATAACAATGTTAATATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| 3UTR-3UTR TCA 90 bp | TGTTGGATCCTGCCTCACCATCATCTCCCGTTCTTTCCTATGTGCATTTTCTACTTCCACAAAGGGAAATaGATGCTAACAGGCGTGATA | + |
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Preference number: 2 (lower is better) Translates to: CWILPHHHLPFFPMCIFYFHKGK*MLTGVI Trigger: TATCACGCCTGTTAGCATTCATTTCCCTTTGTGGAA...GTAGAAAATGCACATAGGAAAGAACGGGAGATGATGGTGAGGCAGGATCCAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| 3UTR-3UTR TCA 90 bp | AAAATATTAACATTGTTATTTCAGCACAGCAGGATGACTGTTGGATCCTGCCTCGTAACTGAAGCTGCCTaGACAGCCACAGACAGTGAA | + |
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Preference number: 2 (lower is better) Translates to: KILTLLFQHSRMTVGSCLVTEAA*TATDSE Trigger: TTCACTGTCTGTGGCTGTTCAGGCAGCTTCAGTTAC...GAGGCAGGATCCAACAGTCATCCTGCTGTGCTGAAATAACAATGTTAATATTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| 3UTR-3UTR GCA 90 bp | AAAATATTAACATTGTTATTTCAGCACAGCAGGATGACTGTTGGATCCTGCCTCTTGTCCACTCTCTCCTaGAGCATCTGCACAGAACCA | + |
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Preference number: 2 (lower is better) Translates to: KILTLLFQHSRMTVGSCLLSTLS*SICTEP Trigger: TGGTTCTGTGCAGATGCTGCAGGAGAGAGTGGACAA...GAGGCAGGATCCAACAGTCATCCTGCTGTGCTGAAATAACAATGTTAATATTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| 3UTR-3UTR TCA 90 bp | AAAATATTAACATTGTTATTTCAGCACAGCAGGATGACTGTTGGATCCTGCCTCAACAGCCACAGACAGTaGAGGGCACCAAGTTTAATA | + |
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Preference number: 2 (lower is better) Translates to: KILTLLFQHSRMTVGSCLNSHRQ*RAPSLI Trigger: TATTAAACTTGGTGCCCTTCACTGTCTGTGGCTGTT...GAGGCAGGATCCAACAGTCATCCTGCTGTGCTGAAATAACAATGTTAATATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| 3UTR-3UTR GCA 90 bp | AAAATATTAACATTGTTATTTCAGCACAGCAGGATGACTGTTGGATCCTGCCTCAGGCCAGACAAGACTTaGTTCTGCATCCAACTTAAT | + |
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Preference number: 2 (lower is better) Translates to: KILTLLFQHSRMTVGSCLRPDKT*FCIQLN Trigger: ATTAAGTTGGATGCAGAAGCAAGTCTTGTCTGGCCT...GAGGCAGGATCCAACAGTCATCCTGCTGTGCTGAAATAACAATGTTAATATTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| 3UTR-3UTR GCA 90 bp | CCGTTCTTTCCTATGTGCATTTTCTACAGAAAGGTTATTACTGAAAAGGGAGTTCTGGACCTAGGAAACTaGTATCTTTTGTCCACTGGA | + |
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Preference number: 2 (lower is better) Translates to: PFFPMCIFYRKVITEKGVLDLGN*YLLSTG Trigger: TCCAGTGGACAAAAGATAGCAGTTTCCTAGGTCCAG...AACTCCCTTTTCAGTAATAACCTTTCTGTAGAAAATGCACATAGGAAAGAACGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| 3UTR-3UTR CCA 90 bp | AAAATATTAACATTGTTATTTCAGCACAGCAGGATGACTGTTGGATCCTGCCTCCCCAAAATTTCCTTCTaGACAGACTATACAATAAGC | + |
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Preference number: 2 (lower is better) Translates to: KILTLLFQHSRMTVGSCLPKISF*TDYTIS Trigger: GCTTATTGTATAGTCTGTCCAGAAGGAAATTTTGGG...GAGGCAGGATCCAACAGTCATCCTGCTGTGCTGAAATAACAATGTTAATATTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| 3UTR-3UTR GCA 90 bp | CCGTTCTTTCCTATGTGCATTTTCTACAGAAAGGTTATTACTGAAAAGGGAGTTCTAGCTAAGTTACCATaGAAGATAGTATATAGCCAA | + |
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Preference number: 2 (lower is better) Translates to: PFFPMCIFYRKVITEKGVLAKLP*KIVYSQ Trigger: TTGGCTATATACTATCTTGCATGGTAACTTAGCTAG...AACTCCCTTTTCAGTAATAACCTTTCTGTAGAAAATGCACATAGGAAAGAACGG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| 3UTR-3UTR GCA 90 bp | CCGTTCTTTCCTATGTGCATTTTCTACAGAAAGGTTATTACTGAAAAGGGAGTTGACAAGACTTGCTTCTaGATCCAACTTAATTTTCAA | + |
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Preference number: 2 (lower is better) Translates to: PFFPMCIFYRKVITEKGVDKTCF*IQLNFQ Trigger: TTGAAAATTAAGTTGGATGCAGAAGCAAGTCTTGTC...AACTCCCTTTTCAGTAATAACCTTTCTGTAGAAAATGCACATAGGAAAGAACGG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| 3UTR GCA 72 bp | AGGAGGCAGCTTCACCCTCACTTCCGCCCATGCCTCTaGTTCAGACTCCATCAGACTCTCTCCACACAAGCC | + |
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Preference number: 3 (lower is better) Translates to: RRQLHPHFRPCL*FRLHQTLSTQA Trigger: GGCTTGTGTGGAGAGAGTCTGATGGAGTCTGAAGCAGAGGCATGGGCGGAAGTGAGGGTGAAGCTGCCTCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| 3UTR GCA 72 bp | TTGTCCACTCTCTCCTGCAGCATCTGCACAGAACCATaGCCACTGCTCAGTTCCCACGGTCTAACAGGAACC | + |
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Preference number: 3 (lower is better) Translates to: LSTLSCSICTEP*PLLSSHGLTGT Trigger: GGTTCCTGTTAGACCGTGGGAACTGAGCAGTGGGCATGGTTCTGTGCAGATGCTGCAGGAGAGAGTGGACAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| 3UTR-3UTR CAA 90 bp | TGTTGGATCCTGCCTCACCATCATCTCCCGTTCTTTCCTATGTGCATTTTCTACTCACTGCTCCCCTGCTaGTCCACTCTCTCCTGCAGC | + |
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Preference number: 3 (lower is better) Translates to: CWILPHHHLPFFPMCIFYSLLPC*STLSCS Trigger: GCTGCAGGAGAGAGTGGACAAGCAGGGGAGCAGTGA...GTAGAAAATGCACATAGGAAAGAACGGGAGATGATGGTGAGGCAGGATCCAACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| 3UTR GCA 72 bp | TTGTTATTTCAGCACAGCAGGATGACTGTTGGATCCTaGCTCACCATCATCTCCCGTTCTTTCCTATGTGCA | + |
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Preference number: 3 (lower is better) Translates to: LLFQHSRMTVGS*LTIISRSFLCA Trigger: TGCACATAGGAAAGAACGGGAGATGATGGTGAGGCAGGATCCAACAGTCATCCTGCTGTGCTGAAATAACAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| 3UTR TCA 72 bp | ACACTTGAAGAGAGGGACCATTTCCACAAAGGGAAATaGATGCTAACAGGCGTGATAGTAACTGAAGCTGCC | + |
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Preference number: 3 (lower is better) Translates to: TLEERDHFHKGK*MLTGVIVTEAA Trigger: GGCAGCTTCAGTTACTATCACGCCTGTTAGCATTCATTTCCCTTTGTGGAAATGGTCCCTCTCTTCAAGTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| 3UTR-3UTR CAA 90 bp | TGTTGGATCCTGCCTCACCATCATCTCCCGTTCTTTCCTATGTGCATTTTCTACTTACTGAAAAGGGAGTaGGAGGAAGAGGATGCTATT | + |
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Preference number: 3 (lower is better) Translates to: CWILPHHHLPFFPMCIFYLLKRE*EEEDAI Trigger: AATAGCATCCTCTTCCTCCAACTCCCTTTTCAGTAA...GTAGAAAATGCACATAGGAAAGAACGGGAGATGATGGTGAGGCAGGATCCAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| 3UTR GCA 72 bp | ATCCTGCCTCACCATCATCTCCCGTTCTTTCCTATGTaGATTTTCTACAGAAAGGTTATTACTGAAAAGGGA | + |
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Preference number: 3 (lower is better) Translates to: ILPHHHLPFFPM*IFYRKVITEKG Trigger: TCCCTTTTCAGTAATAACCTTTCTGTAGAAAATGCACATAGGAAAGAACGGGAGATGATGGTGAGGCAGGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| CDS-3UTR TCA 90 bp | TGTTGGATCCTGCCTCACCATCATCTCCCGTTCTTTCCTATGTGCATTTTCTACGCCTCTCTGAACTTCTaGAGGTACAGTTTCAGAGGC | + |
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Preference number: 4 (lower is better) Translates to: CWILPHHHLPFFPMCIFYASLNF*RYSFRG Trigger: GCCTCTGAAACTGTACCTTCAGAAGTTCAGAGAGGC...GTAGAAAATGCACATAGGAAAGAACGGGAGATGATGGTGAGGCAGGATCCAACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| CDS-3UTR CCA 90 bp | AAAATATTAACATTGTTATTTCAGCACAGCAGGATGACTGTTGGATCCTGCCTCGGGAGGCATCTGTGGTaGAGCTGTCGCCGTCCATTG | + |
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Preference number: 4 (lower is better) Translates to: KILTLLFQHSRMTVGSCLGRHLW*SCRRPL Trigger: CAATGGACGGCGACAGCTCCACCACAGATGCCTCCC...GAGGCAGGATCCAACAGTCATCCTGCTGTGCTGAAATAACAATGTTAATATTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| CDS-3UTR CCA 90 bp | CCGTTCTTTCCTATGTGCATTTTCTACAGAAAGGTTATTACTGAAAAGGGAGTTGCTGGGAGGCATCTGTaGTGGAGCTGTCGCCGTCCA | + |
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Preference number: 4 (lower is better) Translates to: PFFPMCIFYRKVITEKGVAGRHL*WSCRRP Trigger: TGGACGGCGACAGCTCCACCACAGATGCCTCCCAGC...AACTCCCTTTTCAGTAATAACCTTTCTGTAGAAAATGCACATAGGAAAGAACGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| CDS-3UTR CCA 90 bp | TGTTGGATCCTGCCTCACCATCATCTCCCGTTCTTTCCTATGTGCATTTTCTACAGCCTAGAGTGGACATaGCAAACAGAATATCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: CWILPHHHLPFFPMCIFYSLEWT*QTEYPP Trigger: GGGAGGATATTCTGTTTGCCATGTCCACTCTAGGCT...GTAGAAAATGCACATAGGAAAGAACGGGAGATGATGGTGAGGCAGGATCCAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| 3UTR CAA 72 bp | TTACTGTTCAGCCTGGACCTAGGAAACTGCTATCTTTaGTCCACTGGAGTACCCAAAATTTCCTTCTGGACA | + |
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Preference number: 4 (lower is better) Translates to: LLFSLDLGNCYL*STGVPKISFWT Trigger: TGTCCAGAAGGAAATTTTGGGTACTCCAGTGGACAAAAGATAGCAGTTTCCTAGGTCCAGGCTGAACAGTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| CDS-3UTR TCA 90 bp | AAAATATTAACATTGTTATTTCAGCACAGCAGGATGACTGTTGGATCCTGCCTCGAATATCCTCCCCATTaGTTGTCTTCCGCTTCTCCT | + |
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Preference number: 4 (lower is better) Translates to: KILTLLFQHSRMTVGSCLEYPPH*LSSASP Trigger: AGGAGAAGCGGAAGACAATCAATGGGGAGGATATTC...GAGGCAGGATCCAACAGTCATCCTGCTGTGCTGAAATAACAATGTTAATATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| CDS-3UTR CCA 90 bp | CCGTTCTTTCCTATGTGCATTTTCTACAGAAAGGTTATTACTGAAAAGGGAGTTAAGCCAGCTGGTAACTaGTTAGTGAATGCCTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: PFFPMCIFYRKVITEKGVKPAGN*LVNASS Trigger: GGAAGAGGCATTCACTAACCAGTTACCAGCTGGCTT...AACTCCCTTTTCAGTAATAACCTTTCTGTAGAAAATGCACATAGGAAAGAACGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| CDS-3UTR TCA 90 bp | CCGTTCTTTCCTATGTGCATTTTCTACAGAAAGGTTATTACTGAAAAGGGAGTTCTTTCATGGCCTCTCTaGACTTCTGAAGGTACAGTT | + |
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Preference number: 4 (lower is better) Translates to: PFFPMCIFYRKVITEKGVLSWPL*TSEGTV Trigger: AACTGTACCTTCAGAAGTTCAGAGAGGCCATGAAAG...AACTCCCTTTTCAGTAATAACCTTTCTGTAGAAAATGCACATAGGAAAGAACGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| CDS-3UTR TCA 90 bp | CCGTTCTTTCCTATGTGCATTTTCTACAGAAAGGTTATTACTGAAAAGGGAGTTATAACGTTTTGCTGTTaGCCATCTGCAGTTATTAAG | + |
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Preference number: 4 (lower is better) Translates to: PFFPMCIFYRKVITEKGVITFCC*PSAVIK Trigger: CTTAATAACTGCAGATGGTCAACAGCAAAACGTTAT...AACTCCCTTTTCAGTAATAACCTTTCTGTAGAAAATGCACATAGGAAAGAACGG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| 3UTR CAA 72 bp | AATTTCCTTCTGGACAGACTATACAATAAGCCATTTTaGATAGAGCTAGAACTACCACAGCACATACACAAA | + |
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Preference number: 4 (lower is better) Translates to: NFLLDRLYNKPF*IELELPQHIHK Trigger: TTTGTGTATGTGCTGTGGTAGTTCTAGCTCTATCAAAAATGGCTTATTGTATAGTCTGTCCAGAAGGAAATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| CDS-3UTR CAA 90 bp | AAAATATTAACATTGTTATTTCAGCACAGCAGGATGACTGTTGGATCCTGCCTCAGAATATCCTCCCCATaGATTGTCTTCCGCTTCTCC | + |
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Preference number: 5 (lower is better) Translates to: KILTLLFQHSRMTVGSCLRISSP*IVFRFS Trigger: GGAGAAGCGGAAGACAATCAATGGGGAGGATATTCT...GAGGCAGGATCCAACAGTCATCCTGCTGTGCTGAAATAACAATGTTAATATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| CDS-3UTR CAA 90 bp | CCGTTCTTTCCTATGTGCATTTTCTACAGAAAGGTTATTACTGAAAAGGGAGTTATTCTTTGGCATCTTTaGCGATCTTTCCTGTTTGAG | + |
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Preference number: 5 (lower is better) Translates to: PFFPMCIFYRKVITEKGVILWHL*RSFLFE Trigger: CTCAAACAGGAAAGATCGCAAAAGATGCCAAAGAAT...AACTCCCTTTTCAGTAATAACCTTTCTGTAGAAAATGCACATAGGAAAGAACGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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| CDS TCA 72 bp | CTAGAGTGGACATGGCAAACAGAATATCCTCCCCATTaGTTGTCTTCCGCTTCTCCTGATGACACCTTTCGC | + |
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Preference number: 6 (lower is better) Translates to: LEWTWQTEYPPH*LSSASPDDTFR Trigger: GCGAAAGGTGTCATCAGGAGAAGCGGAAGACAATCAATGGGGAGGATATTCTGTTTGCCATGTCCACTCTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130911.8 |
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