Pregenerated sensors for NFS1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027618Ensembl transcript IDs: ENSMUST00000029147.16, ENSMUST00000109600.2, ENSMUST00000184469.2
Found 91 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TACATGCCTACACAGGAGCCGAGGCTAAGAAAGCTAGCCTCAGCTTTCACTAGAGACCACGTCAGGCAGTaGGGTTCCTGGCTGTGCACA | + |
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Preference number: 2 (lower is better) Translates to: YMPTQEPRLRKLASAFTRDHVRQ*GSWLCT Trigger: TGTGCACAGCCAGGAACCTCACTGCCTGACGTGGTC...TCTAGTGAAAGCTGAGGCTAGCTTTCTTAGCCTCGGCTCCTGTGTAGGCATGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| 3UTR-3UTR TCA 90 bp | ACAGAGAAGCAGTCTTTGAACCTAGAGCCTTCTTCCAGTTCTTCCATCTCTGCACTGTGCACAGATCAGTaGGGCCAGAACAGCCAGGCC | + |
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Preference number: 2 (lower is better) Translates to: TEKQSLNLEPSSSSSISALCTDQ*GQNSQA Trigger: GGCCTGGCTGTTCTGGCCTCACTGATCTGTGCACAG...TGCAGAGATGGAAGAACTGGAAGAAGGCTCTAGGTTCAAAGACTGCTTCTCTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| 3UTR-3UTR GCA 90 bp | AGACCCCAAAGGAAACAAGACTTTAATACAACTTGGTGTTCTTCAGCTGAAGTCAATAAAGTTTGTTTATaGCAGTCCCTAATGGCGCCA | + |
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Preference number: 2 (lower is better) Translates to: RPQRKQDFNTTWCSSAEVNKVCL*QSLMAP Trigger: TGGCGCCATTAGGGACTGGCATAAACAAACTTTATT...GACTTCAGCTGAAGAACACCAAGTTGTATTAAAGTCTTGTTTCCTTTGGGGTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| 3UTR GCA 72 bp | ACATTCTGTGGTGAAGTCACTGCAGAGCTTCCCATCTaGTTTGAGCATGGACCACGTCAGGCAGTGAGGTTC | + |
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Preference number: 3 (lower is better) Translates to: TFCGEVTAELPI*FEHGPRQAVRF Trigger: GAACCTCACTGCCTGACGTGGTCCATGCTCAAAGCAGATGGGAAGCTCTGCAGTGACTTCACCACAGAATGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| 3UTR TCA 72 bp | GATAAGAATGGCCACGCCAGGCAAGAGAAGAACTCCTaGGGAAGATTACGGAATACATGCCTACACAGGAGC | + |
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Preference number: 3 (lower is better) Translates to: DKNGHARQEKNS*GRLRNTCLHRS Trigger: GCTCCTGTGTAGGCATGTATTCCGTAATCTTCCTCAGGAGTTCTTCTCTTGCCTGGCGTGGCCATTCTTATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| 3UTR-3UTR CAA 90 bp | CAAAAGAGAGGAAAGAAGATGAGACCCCAAAGGAAACAAGACTTTAATACAACTACAGAGAAGCAGTCTTaGAACCTAGAGCCTTCTTCC | + |
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Preference number: 3 (lower is better) Translates to: QKRGKKMRPQRKQDFNTTTEKQS*NLEPSS Trigger: GGAAGAAGGCTCTAGGTTCAAAGACTGCTTCTCTGT...AGTTGTATTAAAGTCTTGTTTCCTTTGGGGTCTCATCTTCTTTCCTCTCTTTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| 3UTR-3UTR CAA 90 bp | ACATGTGTTTTGAGTTATGCACAAGTGTTAACCTTACGAGCACTGCCTCATTTATATTTCACTTTCCACTaGGTAGATGAGGAGTTCAAG | + |
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Preference number: 3 (lower is better) Translates to: TCVLSYAQVLTLRALPHLYFTFH*VDEEFK Trigger: CTTGAACTCCTCATCTACCAAGTGGAAAGTGAAATA...TAAATGAGGCAGTGCTCGTAAGGTTAACACTTGTGCATAACTCAAAACACATGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109600.2 |
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| CDS-3UTR TCA 90 bp | AGTGAGGTTCCTGGCTGTGCACAGATCAGTGAGGCCAGAACAGCCAGGCCAGCAGCCTCTGCCTCTGAGTaGACAGGCGAATGGGGGCCA | + |
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Preference number: 4 (lower is better) Translates to: SEVPGCAQISEARTARPAASASE*TGEWGP Trigger: TGGCCCCCATTCGCCTGTTCACTCAGAGGCAGAGGC...TGCTGGCCTGGCTGTTCTGGCCTCACTGATCTGTGCACAGCCAGGAACCTCACT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR CCA 90 bp | ACTGCAGAGCTTCCCATCTGCTTTGAGCATGGACCACGTCAGGCAGTGAGGTTCGGCGAGCACGTTCCATaGCTGCCTCGCTCTCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: TAELPICFEHGPRQAVRFGEHVP*LPRSPS Trigger: GCTGGGAGAGCGAGGCAGCCATGGAACGTGCTCGCC...GAACCTCACTGCCTGACGTGGTCCATGCTCAAAGCAGATGGGAAGCTCTGCAGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR TCA 90 bp | CCTCCAGGCCCTCAGATAAGAATGGCCACGCCAGGCAAGAGAAGAACTCCTGAGGCACAGGGAGGTAAGTaGCCCGAAAGCCCTCAGCTT | + |
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Preference number: 4 (lower is better) Translates to: PPGPQIRMATPGKRRTPEAQGGK*PESPQL Trigger: AAGCTGAGGGCTTTCGGGTCACTTACCTCCCTGTGC...CTCAGGAGTTCTTCTCTTGCCTGGCGTGGCCATTCTTATCTGAGGGCCTGGAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR GCA 90 bp | CCTCCAGGCCCTCAGATAAGAATGGCCACGCCAGGCAAGAGAAGAACTCCTGAGAGCACGTTCCATGGCTaGCTCGCTCTCCCAGCCATA | + |
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Preference number: 4 (lower is better) Translates to: PPGPQIRMATPGKRRTPESTFHG*LALPAI Trigger: TATGGCTGGGAGAGCGAGGCAGCCATGGAACGTGCT...CTCAGGAGTTCTTCTCTTGCCTGGCGTGGCCATTCTTATCTGAGGGCCTGGAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR GCA 90 bp | AGTGAGGTTCCTGGCTGTGCACAGATCAGTGAGGCCAGAACAGCCAGGCCAGCAGCTCTCCCAGCCATATaGATGAGTCCGAGAATGAGG | + |
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Preference number: 4 (lower is better) Translates to: SEVPGCAQISEARTARPAALPAI*MSPRMR Trigger: CCTCATTCTCGGACTCATGCATATGGCTGGGAGAGC...TGCTGGCCTGGCTGTTCTGGCCTCACTGATCTGTGCACAGCCAGGAACCTCACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR TCA 90 bp | AGTGAGGTTCCTGGCTGTGCACAGATCAGTGAGGCCAGAACAGCCAGGCCAGCAGGTTCCCATAGTAGTTaGCAAGGTATGGGAGCATGG | + |
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Preference number: 4 (lower is better) Translates to: SEVPGCAQISEARTARPAGSHSS*QGMGAW Trigger: CCATGCTCCCATACCTTGTCAACTACTATGGGAACC...TGCTGGCCTGGCTGTTCTGGCCTCACTGATCTGTGCACAGCCAGGAACCTCACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR CCA 90 bp | CCTCCAGGCCCTCAGATAAGAATGGCCACGCCAGGCAAGAGAAGAACTCCTGAGTGGGCGGCATCAGTGTaGAAGTACACCTTTCTGGAA | + |
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Preference number: 4 (lower is better) Translates to: PPGPQIRMATPGKRRTPEWAASV*KYTFLE Trigger: TTCCAGAAAGGTGTACTTCCACACTGATGCCGCCCA...CTCAGGAGTTCTTCTCTTGCCTGGCGTGGCCATTCTTATCTGAGGGCCTGGAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR TCA 90 bp | AGAATGGCCACGCCAGGCAAGAGAAGAACTCCTGAGGAAGATTACGGAATACATCACTGCCTCTGCCTCTaGGTGAACAGGCGAATGGGG | + |
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Preference number: 4 (lower is better) Translates to: RMATPGKRRTPEEDYGIHHCLCL*VNRRMG Trigger: CCCCATTCGCCTGTTCACTCAGAGGCAGAGGCAGTG...ATGTATTCCGTAATCTTCCTCAGGAGTTCTTCTCTTGCCTGGCGTGGCCATTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR CCA 90 bp | AAGGCAGTGCCTCCAGGCCCTCAGATAAGAATGGCCACGCCAGGCAAGAGAAGAGTAGTTGACAAGGTATaGGAGCATGGCATCAAGCAC | + |
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Preference number: 4 (lower is better) Translates to: KAVPPGPQIRMATPGKRRVVDKV*EHGIKH Trigger: GTGCTTGATGCCATGCTCCCATACCTTGTCAACTAC...TCTTCTCTTGCCTGGCGTGGCCATTCTTATCTGAGGGCCTGGAGGCACTGCCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR CCA 90 bp | ACAGAGAAGCAGTCTTTGAACCTAGAGCCTTCTTCCAGTTCTTCCATCTCTGCACCACCACCAAGGGTGTaGGCACTGTCCCAGACCGCA | + |
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Preference number: 4 (lower is better) Translates to: TEKQSLNLEPSSSSSISAPPPRV*ALSQTA Trigger: TGCGGTCTGGGACAGTGCCCACACCCTTGGTGGTGG...TGCAGAGATGGAAGAACTGGAAGAAGGCTCTAGGTTCAAAGACTGCTTCTCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR TCA 90 bp | CTTAGAGAAATGAGCGGATTTGTCAGAGGTCACCTAGGGAAGCTGGGAACTAATCACTGCCTCTGCCTCTaGGTGAACAGGCGAATGGGG | + |
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Preference number: 4 (lower is better) Translates to: LREMSGFVRGHLGKLGTNHCLCL*VNRRMG Trigger: CCCCATTCGCCTGTTCACTCAGAGGCAGAGGCAGTG...ATTAGTTCCCAGCTTCCCTAGGTGACCTCTGACAAATCCGCTCATTTCTCTAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109600.2 |
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| CDS-3UTR TCA 90 bp | TCAGCTTTCACTAGAGAACATTCTGTGGTGAAGTCACTGCAGAGCTTCCCATCTACAAGGCCACATCCTTaGGGGCCATCAGCAGGCTCT | + |
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Preference number: 4 (lower is better) Translates to: SAFTREHSVVKSLQSFPSTRPHP*GPSAGS Trigger: AGAGCCTGCTGATGGCCCTCAAGGATGTGGCCTTGT...AGATGGGAAGCTCTGCAGTGACTTCACCACAGAATGTTCTCTAGTGAAAGCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR TCA 90 bp | TCAGCTTTCACTAGAGAACATTCTGTGGTGAAGTCACTGCAGAGCTTCCCATCTAGTGCAGGCACTCCCTaGGGACAAGGCCACATCCTT | + |
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Preference number: 4 (lower is better) Translates to: SAFTREHSVVKSLQSFPSSAGTP*GQGHIL Trigger: AAGGATGTGGCCTTGTCCTCAGGGAGTGCCTGCACT...AGATGGGAAGCTCTGCAGTGACTTCACCACAGAATGTTCTCTAGTGAAAGCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR GCA 90 bp | AGACCCCAAAGGAAACAAGACTTTAATACAACTTGGTGTTCTTCAGCTGAAGTCCGCATACCCCGCTCCTaGCCGCCTCCACTCTGTAGG | + |
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Preference number: 4 (lower is better) Translates to: RPQRKQDFNTTWCSSAEVRIPRS*PPPLCR Trigger: CCTACAGAGTGGAGGCGGGCAGGAGCGGGGTATGCG...GACTTCAGCTGAAGAACACCAAGTTGTATTAAAGTCTTGTTTCCTTTGGGGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR CCA 90 bp | ACAGAGAAGCAGTCTTTGAACCTAGAGCCTTCTTCCAGTTCTTCCATCTCTGCAAGGCTGGTGTCTGGCTaGATGGCAGCCTCTAGTTCC | + |
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Preference number: 4 (lower is better) Translates to: TEKQSLNLEPSSSSSISARLVSG*MAASSS Trigger: GGAACTAGAGGCTGCCATCCAGCCAGACACCAGCCT...TGCAGAGATGGAAGAACTGGAAGAAGGCTCTAGGTTCAAAGACTGCTTCTCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR CCA 90 bp | CTTAGAGAAATGAGCGGATTTGTCAGAGGTCACCTAGGGAAGCTGGGAACTAATTCCTTCGTGCTAACCTaGCGAGCACGTTCCATGGCT | + |
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Preference number: 4 (lower is better) Translates to: LREMSGFVRGHLGKLGTNSFVLT*RARSMA Trigger: AGCCATGGAACGTGCTCGCCAGGTTAGCACGAAGGA...ATTAGTTCCCAGCTTCCCTAGGTGACCTCTGACAAATCCGCTCATTTCTCTAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109600.2 |
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| CDS-3UTR TCA 90 bp | ACAGAGAAGCAGTCTTTGAACCTAGAGCCTTCTTCCAGTTCTTCCATCTCTGCACGGTACCAATTGCTCTaGGGACATAAGAGGGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: TEKQSLNLEPSSSSSISARYQLL*GHKRAP Trigger: TGGAGCCCTCTTATGTCCTCAGAGCAATTGGTACCG...TGCAGAGATGGAAGAACTGGAAGAAGGCTCTAGGTTCAAAGACTGCTTCTCTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR GCA 90 bp | AGAATGGCCACGCCAGGCAAGAGAAGAACTCCTGAGGAAGATTACGGAATACATATCAGAGATGCTACTTaGTGGCGAGCACGTTCCATG | + |
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Preference number: 4 (lower is better) Translates to: RMATPGKRRTPEEDYGIHIRDAT*WRARSM Trigger: CATGGAACGTGCTCGCCAGCAAGTAGCATCTCTGAT...ATGTATTCCGTAATCTTCCTCAGGAGTTCTTCTCTTGCCTGGCGTGGCCATTCT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR GCA 90 bp | TACATGCCTACACAGGAGCCGAGGCTAAGAAAGCTAGCCTCAGCTTTCACTAGACTCATCGGTACCAATTaGTCTGAGGACATAAGAGGG | + |
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Preference number: 4 (lower is better) Translates to: YMPTQEPRLRKLASAFTRLIGTN*SEDIRG Trigger: CCCTCTTATGTCCTCAGAGCAATTGGTACCGATGAG...TCTAGTGAAAGCTGAGGCTAGCTTTCTTAGCCTCGGCTCCTGTGTAGGCATGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR CCA 90 bp | AGAATGGCCACGCCAGGCAAGAGAAGAACTCCTGAGGAAGATTACGGAATACATCAAGGTATGGGAGCATaGCATCAAGCACTCTGGGAT | + |
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Preference number: 4 (lower is better) Translates to: RMATPGKRRTPEEDYGIHQGMGA*HQALWD Trigger: ATCCCAGAGTGCTTGATGCCATGCTCCCATACCTTG...ATGTATTCCGTAATCTTCCTCAGGAGTTCTTCTCTTGCCTGGCGTGGCCATTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR CCA 90 bp | TCAGCTTTCACTAGAGAACATTCTGTGGTGAAGTCACTGCAGAGCTTCCCATCTTGGTGTCTGGCTGGATaGCAGCCTCTAGTTCCTTTA | + |
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Preference number: 4 (lower is better) Translates to: SAFTREHSVVKSLQSFPSWCLAG*QPLVPL Trigger: TAAAGGAACTAGAGGCTGCCATCCAGCCAGACACCA...AGATGGGAAGCTCTGCAGTGACTTCACCACAGAATGTTCTCTAGTGAAAGCTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR TCA 90 bp | ATAATCTTATACAGCATGAACTATTTCACTTTCCACTTGGTAGATGAGGAGTTCGCCTCTGCCTCTGAGTaGACAGGCGAATGGGGGCCA | + |
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Preference number: 4 (lower is better) Translates to: IILYSMNYFTFHLVDEEFASASE*TGEWGP Trigger: TGGCCCCCATTCGCCTGTTCACTCAGAGGCAGAGGC...GAACTCCTCATCTACCAAGTGGAAAGTGAAATAGTTCATGCTGTATAAGATTAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109600.2 |
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| CDS-3UTR GCA 90 bp | GGAAAGAAGATGAGACCCCAAAGGAAACAAGACTTTAATACAACTTGGTGTTCTTTGTGCCAACTCACATaGAGCTCCCAGGCCCACCAC | + |
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Preference number: 4 (lower is better) Translates to: GKKMRPQRKQDFNTTWCSLCQLT*SSQAHH Trigger: GTGGTGGGCCTGGGAGCTGCATGTGAGTTGGCACAA...AGAACACCAAGTTGTATTAAAGTCTTGTTTCCTTTGGGGTCTCATCTTCTTTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR GCA 90 bp | CCAATAATCTTATACAGCATGAACTATTTCACTTTCCACTTGGTAGATGAGGAGAGCACGTTCCATGGCTaGCTCGCTCTCCCAGCCATA | + |
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Preference number: 4 (lower is better) Translates to: PIILYSMNYFTFHLVDEESTFHG*LALPAI Trigger: TATGGCTGGGAGAGCGAGGCAGCCATGGAACGTGCT...CTCCTCATCTACCAAGTGGAAAGTGAAATAGTTCATGCTGTATAAGATTATTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109600.2 |
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| CDS-3UTR GCA 90 bp | AGACCCCAAAGGAAACAAGACTTTAATACAACTTGGTGTTCTTCAGCTGAAGTCAGCTCCAATCAGAGATaGTACTTGCTGGCGAGCACG | + |
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Preference number: 4 (lower is better) Translates to: RPQRKQDFNTTWCSSAEVSSNQR*YLLAST Trigger: CGTGCTCGCCAGCAAGTAGCATCTCTGATTGGAGCT...GACTTCAGCTGAAGAACACCAAGTTGTATTAAAGTCTTGTTTCCTTTGGGGTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR TCA 90 bp | ACAGAGAAGCAGTCTTTGAACCTAGAGCCTTCTTCCAGTTCTTCCATCTCTGCACAATCTTCATGTCATTaGCGTCAAGTGGGATTTTCC | + |
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Preference number: 4 (lower is better) Translates to: TEKQSLNLEPSSSSSISAQSSCH*RQVGFS Trigger: GGAAAATCCCACTTGACGTCAATGACATGAAGATTG...TGCAGAGATGGAAGAACTGGAAGAAGGCTCTAGGTTCAAAGACTGCTTCTCTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR TCA 90 bp | AGACCCCAAAGGAAACAAGACTTTAATACAACTTGGTGTTCTTCAGCTGAAGTCGTTCCTTTAAGTCAATaGTCCCGCTCTTCTGCACAG | + |
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Preference number: 4 (lower is better) Translates to: RPQRKQDFNTTWCSSAEVVPLSQ*SRSSAQ Trigger: CTGTGCAGAAGAGCGGGATCATTGACTTAAAGGAAC...GACTTCAGCTGAAGAACACCAAGTTGTATTAAAGTCTTGTTTCCTTTGGGGTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR GCA 90 bp | CCAATAATCTTATACAGCATGAACTATTTCACTTTCCACTTGGTAGATGAGGAGGCTCTCCCAGCCATATaGATGAGTCCGAGAATGAGG | + |
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Preference number: 4 (lower is better) Translates to: PIILYSMNYFTFHLVDEEALPAI*MSPRMR Trigger: CCTCATTCTCGGACTCATGCATATGGCTGGGAGAGC...CTCCTCATCTACCAAGTGGAAAGTGAAATAGTTCATGCTGTATAAGATTATTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109600.2 |
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| CDS-3UTR CCA 90 bp | ACAGAGAAGCAGTCTTTGAACCTAGAGCCTTCTTCCAGTTCTTCCATCTCTGCACATTTGTGTTCTGTCTaGGTTGTGACCAAGTGTTTT | + |
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Preference number: 4 (lower is better) Translates to: TEKQSLNLEPSSSSSISAHLCSV*VVTKCF Trigger: AAAACACTTGGTCACAACCCAGACAGAACACAAATG...TGCAGAGATGGAAGAACTGGAAGAAGGCTCTAGGTTCAAAGACTGCTTCTCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR CCA 90 bp | CAAAAGAGAGGAAAGAAGATGAGACCCCAAAGGAAACAAGACTTTAATACAACTAGGTCAATGCCATCCTaGACCATCTCCCAGAGAGGA | + |
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Preference number: 4 (lower is better) Translates to: QKRGKKMRPQRKQDFNTTRSMPS*TISQRG Trigger: TCCTCTCTGGGAGATGGTCCAGGATGGCATTGACCT...AGTTGTATTAAAGTCTTGTTTCCTTTGGGGTCTCATCTTCTTTCCTCTCTTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR GCA 90 bp | AGACCCCAAAGGAAACAAGACTTTAATACAACTTGGTGTTCTTCAGCTGAAGTCGGCCACTCCCTTAATTaGTATGTTGTTGGACTCAGT | + |
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Preference number: 4 (lower is better) Translates to: RPQRKQDFNTTWCSSAEVGHSLN*YVVGLS Trigger: ACTGAGTCCAACAACATAGCAATTAAGGGAGTGGCC...GACTTCAGCTGAAGAACACCAAGTTGTATTAAAGTCTTGTTTCCTTTGGGGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR CCA 90 bp | TCAGCTTTCACTAGAGAACATTCTGTGGTGAAGTCACTGCAGAGCTTCCCATCTCCCTATTTCTGCAATTaGTTGCTTTACTCCAATTTC | + |
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Preference number: 4 (lower is better) Translates to: SAFTREHSVVKSLQSFPSPYFCN*LLYSNF Trigger: GAAATTGGAGTAAAGCAACCAATTGCAGAAATAGGG...AGATGGGAAGCTCTGCAGTGACTTCACCACAGAATGTTCTCTAGTGAAAGCTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR CCA 90 bp | ATAATCTTATACAGCATGAACTATTTCACTTTCCACTTGGTAGATGAGGAGTTCCAAGGTATGGGAGCATaGCATCAAGCACTCTGGGAT | + |
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Preference number: 4 (lower is better) Translates to: IILYSMNYFTFHLVDEEFQGMGA*HQALWD Trigger: ATCCCAGAGTGCTTGATGCCATGCTCCCATACCTTG...GAACTCCTCATCTACCAAGTGGAAAGTGAAATAGTTCATGCTGTATAAGATTAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109600.2 |
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| CDS-3UTR CCA 90 bp | ATAATCTTATACAGCATGAACTATTTCACTTTCCACTTGGTAGATGAGGAGTTCGTAGTTGACAAGGTATaGGAGCATGGCATCAAGCAC | + |
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Preference number: 4 (lower is better) Translates to: IILYSMNYFTFHLVDEEFVVDKV*EHGIKH Trigger: GTGCTTGATGCCATGCTCCCATACCTTGTCAACTAC...GAACTCCTCATCTACCAAGTGGAAAGTGAAATAGTTCATGCTGTATAAGATTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109600.2 |
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| CDS-3UTR TCA 90 bp | CTTACGAGCACTGCCTCATTTAATTTCCCCAATAATCTTATACAGCATGAACTATCCAGAGCTACTACCTaGGTCTCTTCTAGAAAAACA | + |
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Preference number: 4 (lower is better) Translates to: LTSTASFNFPNNLIQHELSRATT*VSSRKT Trigger: TGTTTTTCTAGAAGAGACTCAGGTAGTAGCTCTGGA...TAGTTCATGCTGTATAAGATTATTGGGGAAATTAAATGAGGCAGTGCTCGTAAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109600.2 |
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| CDS GCA 90 bp | ACCACCAAGGGTGTGGGCACTGTCCCAGACCGCATACCCCGCTCCTaGCCGCCTCCACTCTGTAGGGCCTCCACACGTACCCGGGGCCTA | + |
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Preference number: 5 (lower is better) Translates to: TTKGVGTVPDRIPRS*PPPLCRASTRTRGL Trigger: TAGGCCCCGGGTACGTGTGGAGGCCCTACAGAGTGGAGGCGGGCAGGAGCGGGGTATGCGGTCTGGGACAGTGCCCACACCCTTGGTGGT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS TCA 90 bp | GGGCCATCAGCAGGCTCTCTCCTTCCACATACGCGAAGGAGAGGTTaGTACAGCCAGGGTAGTGCTGCTTCGGGTCCCCGTTCATTACCA | + |
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Preference number: 5 (lower is better) Translates to: GPSAGSLLPHTRRRG*YSQGSAASGPRSLP Trigger: TGGTAATGAACGGGGACCCGAAGCAGCACTACCCTGGCTGTATCAACCTCTCCTTCGCGTATGTGGAAGGAGAGAGCCTGCTGATGGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS GCA 90 bp | CTCCTCACAGTCCTTCGTGCTAACCTGGCGAGCACGTTCCATGGCTaGCTCGCTCTCCCAGCCATATGCATGAGTCCGAGAATGAGGGTT | + |
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Preference number: 5 (lower is better) Translates to: LLTVLRANLASTFHG*LALPAICMSPRMRV Trigger: AACCCTCATTCTCGGACTCATGCATATGGCTGGGAGAGCGAGGCAGCCATGGAACGTGCTCGCCAGGTTAGCACGAAGGACTGTGAGGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109600.2 |
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| CDS GCA 90 bp | TTGCTGGCGAGCACGTTCCATGGCTGCCTCGCTCTCCCAGCCATATaGATGAGTCCGAGAATGAGGGTTCCCATAGTAGTTGACAAGGTA | + |
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Preference number: 5 (lower is better) Translates to: LLASTFHGCLALPAI*MSPRMRVPIVVDKV Trigger: TACCTTGTCAACTACTATGGGAACCCTCATTCTCGGACTCATGCATATGGCTGGGAGAGCGAGGCAGCCATGGAACGTGCTCGCCAGCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS GCA 90 bp | AACCTGGCGAGCACGTTCCATGGCTGCCTCGCTCTCCCAGCCATATaGATGAGTCCGAGAATGAGGGTTCCCATAGTAGTTGACAAGGTA | + |
|
Preference number: 5 (lower is better) Translates to: NLASTFHGCLALPAI*MSPRMRVPIVVDKV Trigger: TACCTTGTCAACTACTATGGGAACCCTCATTCTCGGACTCATGCATATGGCTGGGAGAGCGAGGCAGCCATGGAACGTGCTCGCCAGGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109600.2 |
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| CDS GCA 90 bp | GAAGCAGTCTTTGAACCTAGAGCCTTCTTCCAGTTCTTCCATCTCTaGACAGGTAGGTCCCTCAGCTTCCAGGGAGCGGCAGGAATCCAG | + |
|
Preference number: 5 (lower is better) Translates to: EAVFEPRAFFQFFHL*TGRSLSFQGAAGIQ Trigger: CTGGATTCCTGCCGCTCCCTGGAAGCTGAGGGACCTACCTGTGCAGAGATGGAAGAACTGGAAGAAGGCTCTAGGTTCAAAGACTGCTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184469.2 |
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| CDS-3UTR CAA 90 bp | AGTGAGGTTCCTGGCTGTGCACAGATCAGTGAGGCCAGAACAGCCAGGCCAGCAGAATCCAGCACACATTaGTGTTCTGTCTGGGTTGTG | + |
|
Preference number: 5 (lower is better) Translates to: SEVPGCAQISEARTARPAESSTH*CSVWVV Trigger: CACAACCCAGACAGAACACAAATGTGTGCTGGATTC...TGCTGGCCTGGCTGTTCTGGCCTCACTGATCTGTGCACAGCCAGGAACCTCACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS CCA 90 bp | TGCATGAGTCCGAGAATGAGGGTTCCCATAGTAGTTGACAAGGTATaGGAGCATGGCATCAAGCACTCTGGGATCCAGAGGAGTGGTGGC | + |
|
Preference number: 5 (lower is better) Translates to: CMSPRMRVPIVVDKV*EHGIKHSGIQRSGG Trigger: GCCACCACTCCTCTGGATCCCAGAGTGCTTGATGCCATGCTCCCATACCTTGTCAACTACTATGGGAACCCTCATTCTCGGACTCATGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029147.16 ENSMUST00000109600.2 |
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| CDS-3UTR CAA 90 bp | AAGGCAGTGCCTCCAGGCCCTCAGATAAGAATGGCCACGCCAGGCAAGAGAAGAGTATTCCATCTCTTGTaGTGCCAACTCACATGCAGC | + |
|
Preference number: 5 (lower is better) Translates to: KAVPPGPQIRMATPGKRRVFHLL*CQLTCS Trigger: GCTGCATGTGAGTTGGCACAACAAGAGATGGAATAC...TCTTCTCTTGCCTGGCGTGGCCATTCTTATCTGAGGGCCTGGAGGCACTGCCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR CAA 90 bp | AGAATGGCCACGCCAGGCAAGAGAAGAACTCCTGAGGAAGATTACGGAATACATGACAAGGCCACATCCTaGAGGGCCATCAGCAGGCTC | + |
|
Preference number: 5 (lower is better) Translates to: RMATPGKRRTPEEDYGIHDKATS*RAISRL Trigger: GAGCCTGCTGATGGCCCTCAAGGATGTGGCCTTGTC...ATGTATTCCGTAATCTTCCTCAGGAGTTCTTCTCTTGCCTGGCGTGGCCATTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS TCA 90 bp | CCCAGCCATATGCATGAGTCCGAGAATGAGGGTTCCCATAGTAGTTaGCAAGGTATGGGAGCATGGCATCAAGCACTCTGGGATCCAGAG | + |
|
Preference number: 5 (lower is better) Translates to: PSHMHESENEGSHSS*QGMGAWHQALWDPE Trigger: CTCTGGATCCCAGAGTGCTTGATGCCATGCTCCCATACCTTGTCAACTACTATGGGAACCCTCATTCTCGGACTCATGCATATGGCTGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029147.16 ENSMUST00000109600.2 |
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| CDS-3UTR CAA 90 bp | ACTGCAGAGCTTCCCATCTGCTTTGAGCATGGACCACGTCAGGCAGTGAGGTTCCCCTTAATTGCTATGTaGTTGGACTCAGTAGCTCCA | + |
|
Preference number: 5 (lower is better) Translates to: TAELPICFEHGPRQAVRFPLIAM*LDSVAP Trigger: TGGAGCTACTGAGTCCAACAACATAGCAATTAAGGG...GAACCTCACTGCCTGACGTGGTCCATGCTCAAAGCAGATGGGAAGCTCTGCAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS CCA 90 bp | ACCGCTGATGCTCATGAGATCAATCTTCATGTCATTGACGTCAAGTaGGATTTTCCCAACCGCTTGGGCGGCATCAGTGTGGAAGTACAC | + |
|
Preference number: 5 (lower is better) Translates to: TADAHEINLHVIDVK*DFPNRLGGISVEVH Trigger: GTGTACTTCCACACTGATGCCGCCCAAGCGGTTGGGAAAATCCCACTTGACGTCAATGACATGAAGATTGATCTCATGAGCATCAGCGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR CAA 90 bp | AAGGCAGTGCCTCCAGGCCCTCAGATAAGAATGGCCACGCCAGGCAAGAGAAGAGCCCTATTTCTGCAATaGGTTGCTTTACTCCAATTT | + |
|
Preference number: 5 (lower is better) Translates to: KAVPPGPQIRMATPGKRRALFLQ*VALLQF Trigger: AAATTGGAGTAAAGCAACCAATTGCAGAAATAGGGC...TCTTCTCTTGCCTGGCGTGGCCATTCTTATCTGAGGGCCTGGAGGCACTGCCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR CAA 90 bp | AAGGCAGTGCCTCCAGGCCCTCAGATAAGAATGGCCACGCCAGGCAAGAGAAGATCAATCTTCATGTCATaGACGTCAAGTGGGATTTTC | + |
|
Preference number: 5 (lower is better) Translates to: KAVPPGPQIRMATPGKRRSIFMS*TSSGIF Trigger: GAAAATCCCACTTGACGTCAATGACATGAAGATTGA...TCTTCTCTTGCCTGGCGTGGCCATTCTTATCTGAGGGCCTGGAGGCACTGCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS CCA 90 bp | TTGACGTCAAGTGGGATTTTCCCAACCGCTTGGGCGGCATCAGTGTaGAAGTACACCTTTCTGGAACTACAAATCTGCCCTATTTCTGCA | + |
|
Preference number: 5 (lower is better) Translates to: LTSSGIFPTAWAASV*KYTFLELQICPISA Trigger: TGCAGAAATAGGGCAGATTTGTAGTTCCAGAAAGGTGTACTTCCACACTGATGCCGCCCAAGCGGTTGGGAAAATCCCACTTGACGTCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR CAA 90 bp | ACTGCAGAGCTTCCCATCTGCTTTGAGCATGGACCACGTCAGGCAGTGAGGTTCTTAATTGCTATGTTGTaGGACTCAGTAGCTCCACTA | + |
|
Preference number: 5 (lower is better) Translates to: TAELPICFEHGPRQAVRFLIAML*DSVAPL Trigger: TAGTGGAGCTACTGAGTCCAACAACATAGCAATTAA...GAACCTCACTGCCTGACGTGGTCCATGCTCAAAGCAGATGGGAAGCTCTGCAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS-3UTR CAA 90 bp | AAGGCAGTGCCTCCAGGCCCTCAGATAAGAATGGCCACGCCAGGCAAGAGAAGATTTACTCCAATTTCATaGTTCACAGTCATAACGGAG | + |
|
Preference number: 5 (lower is better) Translates to: KAVPPGPQIRMATPGKRRFTPIS*FTVITE Trigger: CTCCGTTATGACTGTGAACAATGAAATTGGAGTAAA...TCTTCTCTTGCCTGGCGTGGCCATTCTTATCTGAGGGCCTGGAGGCACTGCCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS TCA 90 bp | ACAGCTATTTCCATCTGTAAGAAAGAAATAGGTCACATAGACCACTaGCTGGAACTCCTCACAGTCCTTCGTGCTAACCTGGCGAGCACG | + |
|
Preference number: 5 (lower is better) Translates to: TAISICKKEIGHIDH*LELLTVLRANLAST Trigger: CGTGCTCGCCAGGTTAGCACGAAGGACTGTGAGGAGTTCCAGTCAGTGGTCTATGTGACCTATTTCTTTCTTACAGATGGAAATAGCTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109600.2 |
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| CDS CCA 90 bp | TCAATCTTCATGTCATTGACGTCAAGTGGGATTTTCCCAACCGCTTaGGCGGCATCAGTGTGGAAGTACACCTTTCTGGAACTACAAATC | + |
|
Preference number: 5 (lower is better) Translates to: SIFMSLTSSGIFPTA*AASVWKYTFLELQI Trigger: GATTTGTAGTTCCAGAAAGGTGTACTTCCACACTGATGCCGCCCAAGCGGTTGGGAAAATCCCACTTGACGTCAATGACATGAAGATTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS GCA 72 bp | GGTGTGGGCACTGTCCCAGACCGCATACCCCGCTCCTaGCCGCCTCCACTCTGTAGGGCCTCCACACGTACC | + |
|
Preference number: 6 (lower is better) Translates to: GVGTVPDRIPRS*PPPLCRASTRT Trigger: GGTACGTGTGGAGGCCCTACAGAGTGGAGGCGGGCAGGAGCGGGGTATGCGGTCTGGGACAGTGCCCACACC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS GCA 72 bp | GTCCTTCGTGCTAACCTGGCGAGCACGTTCCATGGCTaGCTCGCTCTCCCAGCCATATGCATGAGTCCGAGA | + |
|
Preference number: 6 (lower is better) Translates to: VLRANLASTFHG*LALPAICMSPR Trigger: TCTCGGACTCATGCATATGGCTGGGAGAGCGAGGCAGCCATGGAACGTGCTCGCCAGGTTAGCACGAAGGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109600.2 |
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| CDS CCA 72 bp | ACTGACTGGAACTCCTCACAGTCCTTCGTGCTAACCTaGCGAGCACGTTCCATGGCTGCCTCGCTCTCCCAG | + |
|
Preference number: 6 (lower is better) Translates to: TDWNSSQSFVLT*RARSMAASLSQ Trigger: CTGGGAGAGCGAGGCAGCCATGGAACGTGCTCGCCAGGTTAGCACGAAGGACTGTGAGGAGTTCCAGTCAGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109600.2 |
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| CDS GCA 72 bp | CAGAGATGCTACTTGCTGGCGAGCACGTTCCATGGCTaGCTCGCTCTCCCAGCCATATGCATGAGTCCGAGA | + |
|
Preference number: 6 (lower is better) Translates to: QRCYLLASTFHG*LALPAICMSPR Trigger: TCTCGGACTCATGCATATGGCTGGGAGAGCGAGGCAGCCATGGAACGTGCTCGCCAGCAAGTAGCATCTCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS CCA 72 bp | GCATGGCATCAAGCACTCTGGGATCCAGAGGAGTGGTaGCCTGTACGTCCATGTAGAGAGGTCGCAGCACTG | + |
|
Preference number: 6 (lower is better) Translates to: AWHQALWDPEEW*PVRPCREVAAL Trigger: CAGTGCTGCGACCTCTCTACATGGACGTACAGGCCACCACTCCTCTGGATCCCAGAGTGCTTGATGCCATGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029147.16 ENSMUST00000109600.2 |
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| CDS CAA 90 bp | AATGATGCAGAAGTGCAGGCACTCCCTGAGGACAAGGCCACATCCTaGAGGGCCATCAGCAGGCTCTCTCCTTCCACATACGCGAAGGAG | + |
|
Preference number: 6 (lower is better) Translates to: NDAEVQALPEDKATS*RAISRLSPSTYAKE Trigger: CTCCTTCGCGTATGTGGAAGGAGAGAGCCTGCTGATGGCCCTCAAGGATGTGGCCTTGTCCTCAGGGAGTGCCTGCACTTCTGCATCATT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS TCA 72 bp | GTCCATGTAGAGAGGTCGCAGCACTGCCTCTGCCTCTaGGTGAACAGGCGAATGGGGGCCATGATCTACAAC | + |
|
Preference number: 6 (lower is better) Translates to: VHVERSQHCLCL*VNRRMGAMIYN Trigger: GTTGTAGATCATGGCCCCCATTCGCCTGTTCACTCAGAGGCAGAGGCAGTGCTGCGACCTCTCTACATGGAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029147.16 ENSMUST00000109600.2 |
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| CDS GCA 72 bp | GAGGACTCATTTCTCGAAGGCGCTTCACGTGGTGGATaGACTTCTCCGCCGTGTAGTCCACCTCCTCTTCTG | + |
|
Preference number: 6 (lower is better) Translates to: EDSFLEGASRGG*TSPPCSPPPLL Trigger: CAGAAGAGGAGGTGGACTACACGGCGGAGAAGTGCATCCACCACGTGAAGCGCCTTCGAGAAATGAGTCCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS CCA 72 bp | CAATCAGAGATGCTACTTGCTGGCGAGCACGTTCCATaGCTGCCTCGCTCTCCCAGCCATATGCATGAGTCC | + |
|
Preference number: 6 (lower is better) Translates to: QSEMLLAGEHVP*LPRSPSHMHES Trigger: GGACTCATGCATATGGCTGGGAGAGCGAGGCAGCCATGGAACGTGCTCGCCAGCAAGTAGCATCTCTGATTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS GCA 72 bp | AGCACGTTCCATGGCTGCCTCGCTCTCCCAGCCATATaGATGAGTCCGAGAATGAGGGTTCCCATAGTAGTT | + |
|
Preference number: 6 (lower is better) Translates to: STFHGCLALPAI*MSPRMRVPIVV Trigger: AACTACTATGGGAACCCTCATTCTCGGACTCATGCATATGGCTGGGAGAGCGAGGCAGCCATGGAACGTGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029147.16 ENSMUST00000109600.2 |
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| CDS GCA 72 bp | TTTGAACCTAGAGCCTTCTTCCAGTTCTTCCATCTCTaGACAGGTAGGTCCCTCAGCTTCCAGGGAGCGGCA | + |
|
Preference number: 6 (lower is better) Translates to: FEPRAFFQFFHL*TGRSLSFQGAA Trigger: TGCCGCTCCCTGGAAGCTGAGGGACCTACCTGTGCAGAGATGGAAGAACTGGAAGAAGGCTCTAGGTTCAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184469.2 |
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| CDS CCA 72 bp | CCGAGAATGAGGGTTCCCATAGTAGTTGACAAGGTATaGGAGCATGGCATCAAGCACTCTGGGATCCAGAGG | + |
|
Preference number: 6 (lower is better) Translates to: PRMRVPIVVDKV*EHGIKHSGIQR Trigger: CCTCTGGATCCCAGAGTGCTTGATGCCATGCTCCCATACCTTGTCAACTACTATGGGAACCCTCATTCTCGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029147.16 ENSMUST00000109600.2 |
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| CDS CCA 72 bp | TGGGTCCACTTGATGCTCTTGAGGTCAATGCCATCCTaGACCATCTCCCAGAGAGGACTCATTTCTCGAAGG | + |
|
Preference number: 6 (lower is better) Translates to: WVHLMLLRSMPS*TISQRGLISRR Trigger: CCTTCGAGAAATGAGTCCTCTCTGGGAGATGGTCCAGGATGGCATTGACCTCAAGAGCATCAAGTGGACCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS CCA 72 bp | AGTGGGATTTTCCCAACCGCTTGGGCGGCATCAGTGTaGAAGTACACCTTTCTGGAACTACAAATCTGCCCT | + |
|
Preference number: 6 (lower is better) Translates to: SGIFPTAWAASV*KYTFLELQICP Trigger: AGGGCAGATTTGTAGTTCCAGAAAGGTGTACTTCCACACTGATGCCGCCCAAGCGGTTGGGAAAATCCCACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS CAA 72 bp | CATGTCATTGACGTCAAGTGGGATTTTCCCAACCGCTaGGGCGGCATCAGTGTGGAAGTACACCTTTCTGGA | + |
|
Preference number: 6 (lower is better) Translates to: HVIDVKWDFPNR*GGISVEVHLSG Trigger: TCCAGAAAGGTGTACTTCCACACTGATGCCGCCCAAGCGGTTGGGAAAATCCCACTTGACGTCAATGACATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS TCA 72 bp | ATGCATGAGTCCGAGAATGAGGGTTCCCATAGTAGTTaGCAAGGTATGGGAGCATGGCATCAAGCACTCTGG | + |
|
Preference number: 6 (lower is better) Translates to: MHESENEGSHSS*QGMGAWHQALW Trigger: CCAGAGTGCTTGATGCCATGCTCCCATACCTTGTCAACTACTATGGGAACCCTCATTCTCGGACTCATGCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029147.16 ENSMUST00000109600.2 |
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| CDS CCA 72 bp | TTCACAGTCATAACGGAGACCAGGCTGGTGTCTGGCTaGATGGCAGCCTCTAGTTCCTTTAAGTCAATGATC | + |
|
Preference number: 6 (lower is better) Translates to: FTVITETRLVSG*MAASSSFKSMI Trigger: GATCATTGACTTAAAGGAACTAGAGGCTGCCATCCAGCCAGACACCAGCCTGGTCTCCGTTATGACTGTGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS CCA 72 bp | ATGTCATTGACGTCAAGTGGGATTTTCCCAACCGCTTaGGCGGCATCAGTGTGGAAGTACACCTTTCTGGAA | + |
|
Preference number: 6 (lower is better) Translates to: MSLTSSGIFPTA*AASVWKYTFLE Trigger: TTCCAGAAAGGTGTACTTCCACACTGATGCCGCCCAAGCGGTTGGGAAAATCCCACTTGACGTCAATGACAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS CCA 72 bp | GCTCATGAGATCAATCTTCATGTCATTGACGTCAAGTaGGATTTTCCCAACCGCTTGGGCGGCATCAGTGTG | + |
|
Preference number: 6 (lower is better) Translates to: AHEINLHVIDVK*DFPNRLGGISV Trigger: CACACTGATGCCGCCCAAGCGGTTGGGAAAATCCCACTTGACGTCAATGACATGAAGATTGATCTCATGAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS TCA 72 bp | AGGAGTGTGCTAAATCCTCATCGGTACCAATTGCTCTaGGGACATAAGAGGGCTCCAATGATGCAGAAGTGC | + |
|
Preference number: 6 (lower is better) Translates to: RSVLNPHRYQLL*GHKRAPMMQKC Trigger: GCACTTCTGCATCATTGGAGCCCTCTTATGTCCTCAGAGCAATTGGTACCGATGAGGATTTAGCACACTCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS CCA 72 bp | GTAGTGCTGCTTCGGGTCCCCGTTCATTACCACATCTaGAAGATTCTTCATTATGTTCTGTACCAGTCGCTC | + |
|
Preference number: 6 (lower is better) Translates to: VVLLRVPVHYHI*KILHYVLYQSL Trigger: GAGCGACTGGTACAGAACATAATGAAGAATCTTCCAGATGTGGTAATGAACGGGGACCCGAAGCAGCACTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS CAA 90 bp | CAAATCTGCCCTATTTCTGCAATTGGTTGCTTTACTCCAATTTCATaGTTCACAGTCATAACGGAGACCAGGCTGGTGTCTGGCTGGATG | + |
|
Preference number: 6 (lower is better) Translates to: QICPISAIGCFTPIS*FTVITETRLVSGWM Trigger: CATCCAGCCAGACACCAGCCTGGTCTCCGTTATGACTGTGAACAATGAAATTGGAGTAAAGCAACCAATTGCAGAAATAGGGCAGATTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS CAA 90 bp | ATCAATCTTCATGTCATTGACGTCAAGTGGGATTTTCCCAACCGCTaGGGCGGCATCAGTGTGGAAGTACACCTTTCTGGAACTACAAAT | + |
|
Preference number: 6 (lower is better) Translates to: INLHVIDVKWDFPNR*GGISVEVHLSGTTN Trigger: ATTTGTAGTTCCAGAAAGGTGTACTTCCACACTGATGCCGCCCAAGCGGTTGGGAAAATCCCACTTGACGTCAATGACATGAAGATTGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS TCA 72 bp | TCCATCTGTAAGAAAGAAATAGGTCACATAGACCACTaGCTGGAACTCCTCACAGTCCTTCGTGCTAACCTG | + |
|
Preference number: 6 (lower is better) Translates to: SICKKEIGHIDH*LELLTVLRANL Trigger: CAGGTTAGCACGAAGGACTGTGAGGAGTTCCAGTCAGTGGTCTATGTGACCTATTTCTTTCTTACAGATGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109600.2 |
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| CDS CCA 72 bp | TGTACCAGTCGCTCTGCTAACTTTGAGATCCGCTTATaGTCGTATTCCATCTCTTGTTGTGCCAACTCACAT | + |
|
Preference number: 6 (lower is better) Translates to: CTSRSANFEIRL*SYSISCCANSH Trigger: ATGTGAGTTGGCACAACAAGAGATGGAATACGACCATAAGCGGATCTCAAAGTTAGCAGAGCGACTGGTACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS CAA 72 bp | CCTATTTCTGCAATTGGTTGCTTTACTCCAATTTCATaGTTCACAGTCATAACGGAGACCAGGCTGGTGTCT | + |
|
Preference number: 6 (lower is better) Translates to: PISAIGCFTPIS*FTVITETRLVS Trigger: AGACACCAGCCTGGTCTCCGTTATGACTGTGAACAATGAAATTGGAGTAAAGCAACCAATTGCAGAAATAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS CAA 72 bp | CCTTTCTGGAACTACAAATCTGCCCTATTTCTGCAATaGGTTGCTTTACTCCAATTTCATTGTTCACAGTCA | + |
|
Preference number: 6 (lower is better) Translates to: PFWNYKSALFLQ*VALLQFHCSQS Trigger: TGACTGTGAACAATGAAATTGGAGTAAAGCAACCAATTGCAGAAATAGGGCAGATTTGTAGTTCCAGAAAGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS CCA 72 bp | CTTTCTGGAACTACAAATCTGCCCTATTTCTGCAATTaGTTGCTTTACTCCAATTTCATTGTTCACAGTCAT | + |
|
Preference number: 6 (lower is better) Translates to: LSGTTNLPYFCN*LLYSNFIVHSH Trigger: ATGACTGTGAACAATGAAATTGGAGTAAAGCAACCAATTGCAGAAATAGGGCAGATTTGTAGTTCCAGAAAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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| CDS CAA 72 bp | TCTGGAACTACAAATCTGCCCTATTTCTGCAATTGGTaGCTTTACTCCAATTTCATTGTTCACAGTCATAAC | + |
|
Preference number: 6 (lower is better) Translates to: SGTTNLPYFCNW*LYSNFIVHSHN Trigger: GTTATGACTGTGAACAATGAAATTGGAGTAAAGCAACCAATTGCAGAAATAGGGCAGATTTGTAGTTCCAGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029147.16 |
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