Pregenerated sensors for NFKBIB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030595Ensembl transcript IDs: ENSMUST00000032815.11, ENSMUST00000085851.12, ENSMUST00000137121.2
Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGCTGGGCTCCGGCTGACTCAGGACCCCGCCCACCCCTCCATCCCTaGGTGAATAAAGCACAAAGCAAAGCACCCGGGCTCGCATCACAC | + |
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Preference number: 1 (lower is better) Translates to: GWAPADSGPRPPLHP*VNKAQSKAPGLASH Trigger: GTGTGATGCGAGCCCGGGTGCTTTGCTTTGTGCTTTATTCACTCAGGGATGGAGGGGTGGGCGGGGTCCTGAGTCAGCCGGAGCCCAGCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| 3UTR TCA 90 bp | GGGCTCCGGCTGACTCAGGACCCCGCCCACCCCTCCATCCCTGAGTaGATAAAGCACAAAGCAAAGCACCCGGGCTCGCATCACACTTCG | + |
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Preference number: 1 (lower is better) Translates to: GLRLTQDPAHPSIPE*IKHKAKHPGSHHTS Trigger: CGAAGTGTGATGCGAGCCCGGGTGCTTTGCTTTGTGCTTTATTCACTCAGGGATGGAGGGGTGGGCGGGGTCCTGAGTCAGCCGGAGCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| 3UTR TCA 90 bp | ACCCCACGCCACTCCTTCCCCACACTCCCTGAGGCTCAGGACTGTTaGCCTCAGAGCCTCCTTTCACCGGGCATTCTGCTCCACTTCCAA | + |
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Preference number: 1 (lower is better) Translates to: TPRHSFPTLPEAQDC*PQSLLSPGILLHFQ Trigger: TTGGAAGTGGAGCAGAATGCCCGGTGAAAGGAGGCTCTGAGGTCAACAGTCCTGAGCCTCAGGGAGTGTGGGGAAGGAGTGGCGTGGGGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| 3UTR TCA 90 bp | TCTGCTCCACTTCCAACTGGTAGGGACTGGAAGCAAGGATGTGCCTaGGAACCAAGCCTGAGAGAAGCCTATGGGCAGGGGCTGGGCTCC | + |
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Preference number: 1 (lower is better) Translates to: SAPLPTGRDWKQGCA*EPSLREAYGQGLGS Trigger: GGAGCCCAGCCCCTGCCCATAGGCTTCTCTCAGGCTTGGTTCTCAGGCACATCCTTGCTTCCAGTCCCTACCAGTTGGAAGTGGAGCAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| 3UTR CCA 90 bp | CACACATCTCTGGTCCCAGCACTCACAAAGATCCAGAGAACAACGTaGCAGGCAGGCTGTGTGAACCGCCATGCCGCTCAGGTGGGCAAG | + |
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Preference number: 1 (lower is better) Translates to: HTSLVPALTKIQRTT*QAGCVNRHAAQVGK Trigger: CTTGCCCACCTGAGCGGCATGGCGGTTCACACAGCCTGCCTGCCACGTTGTTCTCTGGATCTTTGTGAGTGCTGGGACCAGAGATGTGTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| 3UTR-3UTR TCA 90 bp | GCCGCTCAGGTGGGCAAGCAGAGCTTTGGGCCTTGTAGAAGCAAGGATGGTGGTGGGCTGGGCTCCGGCTaGCTCAGGACCCCGCCCACC | + |
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Preference number: 2 (lower is better) Translates to: AAQVGKQSFGPCRSKDGGGLGSG*LRTPPT Trigger: GGTGGGCGGGGTCCTGAGTCAGCCGGAGCCCAGCCC...ACCACCATCCTTGCTTCTACAAGGCCCAAAGCTCTGCTTGCCCACCTGAGCGGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| 3UTR-3UTR TCA 90 bp | CAAGCATATGAAGTGGCAGAGCTGCTATTCACAGTGGCCATCGAGGTGGTAACCCTCGGGAGGGAAGGCTaGCCCCACGCCACTCCTTCC | + |
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Preference number: 2 (lower is better) Translates to: QAYEVAELLFTVAIEVVTLGREG*PHATPS Trigger: GGAAGGAGTGGCGTGGGGTCAGCCTTCCCTCCCGAG...GGTTACCACCTCGATGGCCACTGTGAATAGCAGCTCTGCCACTTCATATGCTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| 3UTR-3UTR CCA 90 bp | TGTCAGGCCAAGCATATGAAGTGGCAGAGCTGCTATTCACAGTGGCCATCGAGGCCTGAGAGAAGCCTATaGGCAGGGGCTGGGCTCCGG | + |
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Preference number: 2 (lower is better) Translates to: CQAKHMKWQSCYSQWPSRPERSL*AGAGLR Trigger: CCGGAGCCCAGCCCCTGCCCATAGGCTTCTCTCAGG...CCTCGATGGCCACTGTGAATAGCAGCTCTGCCACTTCATATGCTTGGCCTGACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| 3UTR-3UTR TCA 90 bp | GGCTGTGTGAACCGCCATGCCGCTCAGGTGGGCAAGCAGAGCTTTGGGCCTTGTCCCTCCATCCCTGAGTaGATAAAGCACAAAGCAAAG | + |
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Preference number: 2 (lower is better) Translates to: GCVNRHAAQVGKQSFGPCPSIPE*IKHKAK Trigger: CTTTGCTTTGTGCTTTATTCACTCAGGGATGGAGGG...ACAAGGCCCAAAGCTCTGCTTGCCCACCTGAGCGGCATGGCGGTTCACACAGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| 3UTR-3UTR GCA 90 bp | CAGGAACACGATGTGGAGCGGCTGGAGCGCATGCAGGAGCAGTTAAAGAAGGCTCTGGAAGCAAGGATGTaGCTGAGAACCAAGCCTGAG | + |
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Preference number: 2 (lower is better) Translates to: QEHDVERLERMQEQLKKALEARM*LRTKPE Trigger: CTCAGGCTTGGTTCTCAGGCACATCCTTGCTTCCAG...AGCCTTCTTTAACTGCTCCTGCATGCGCTCCAGCCGCTCCACATCGTGTTCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| 3UTR-3UTR CCA 90 bp | CATAAACCAGCTGTGACGACACACATCTCTGGTCCCAGCACTCACAAAGATCCAACGATGTGGAGCGGCTaGAGCGCATGCAGGAGCAGT | + |
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Preference number: 2 (lower is better) Translates to: HKPAVTTHISGPSTHKDPTMWSG*SACRSS Trigger: ACTGCTCCTGCATGCGCTCCAGCCGCTCCACATCGT...TGGATCTTTGTGAGTGCTGGGACCAGAGATGTGTGTCGTCACAGCTGGTTTATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| 3UTR-3UTR TCA 90 bp | AGAGCTTTGGGCCTTGTAGAAGCAAGGATGGTGGTCCTCACTGACTATGACACAGTCAGGCCAAGCATATaGAGTGGCAGAGCTGCTATT | + |
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Preference number: 2 (lower is better) Translates to: RALGLVEARMVVLTDYDTVRPSI*SGRAAI Trigger: AATAGCAGCTCTGCCACTTCATATGCTTGGCCTGAC...TGTGTCATAGTCAGTGAGGACCACCATCCTTGCTTCTACAAGGCCCAAAGCTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| 3UTR TCA 72 bp | CCGGCTGACTCAGGACCCCGCCCACCCCTCCATCCCTaGGTGAATAAAGCACAAAGCAAAGCACCCGGGCTC | + |
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Preference number: 3 (lower is better) Translates to: PADSGPRPPLHP*VNKAQSKAPGL Trigger: GAGCCCGGGTGCTTTGCTTTGTGCTTTATTCACTCAGGGATGGAGGGGTGGGCGGGGTCCTGAGTCAGCCGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| 3UTR GCA 72 bp | GAGAACAACGTGGCAGGCAGGCTGTGTGAACCGCCATaGCGCTCAGGTGGGCAAGCAGAGCTTTGGGCCTTG | + |
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Preference number: 3 (lower is better) Translates to: ENNVAGRLCEPP*RSGGQAELWAL Trigger: CAAGGCCCAAAGCTCTGCTTGCCCACCTGAGCGGCATGGCGGTTCACACAGCCTGCCTGCCACGTTGTTCTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| 3UTR TCA 72 bp | CACTCCTTCCCCACACTCCCTGAGGCTCAGGACTGTTaGCCTCAGAGCCTCCTTTCACCGGGCATTCTGCTC | + |
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Preference number: 3 (lower is better) Translates to: HSFPTLPEAQDC*PQSLLSPGILL Trigger: GAGCAGAATGCCCGGTGAAAGGAGGCTCTGAGGTCAACAGTCCTGAGCCTCAGGGAGTGTGGGGAAGGAGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| CDS-3UTR CCA 90 bp | GGCTGTGTGAACCGCCATGCCGCTCAGGTGGGCAAGCAGAGCTTTGGGCCTTGTGGGCAAGGATGGGGTTaGGCCGGAGCAGGGCACTGC | + |
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Preference number: 4 (lower is better) Translates to: GCVNRHAAQVGKQSFGPCGQGWG*AGAGHC Trigger: GCAGTGCCCTGCTCCGGCCCAACCCCATCCTTGCCC...ACAAGGCCCAAAGCTCTGCTTGCCCACCTGAGCGGCATGGCGGTTCACACAGCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| CDS-3UTR CCA 90 bp | GGCTGTGTGAACCGCCATGCCGCTCAGGTGGGCAAGCAGAGCTTTGGGCCTTGTAGCACGCTGGCTGCCTaGGCTTCTACTGCCAGGTGC | + |
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Preference number: 4 (lower is better) Translates to: GCVNRHAAQVGKQSFGPCSTLAA*ASTARC Trigger: GCACCTGGCAGTAGAAGCCCAGGCAGCCAGCGTGCT...ACAAGGCCCAAAGCTCTGCTTGCCCACCTGAGCGGCATGGCGGTTCACACAGCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| CDS-3UTR TCA 90 bp | CGCCATGCTAGGGGAGGCTCTCGGGAGGGAAGGCTGACCCCACGCCACTCCTTCAGTCCTGGCTCTGAGTaGGGTAGGTATCTGAGGCAT | + |
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Preference number: 4 (lower is better) Translates to: RHARGGSREGRLTPRHSFSPGSE*GRYLRH Trigger: ATGCCTCAGATACCTACCTCACTCAGAGCCAGGACT...GAAGGAGTGGCGTGGGGTCAGCCTTCCCTCCCGAGAGCCTCCCCTAGCATGGCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| CDS-3UTR CCA 90 bp | CAGGAACACGATGTGGAGCGGCTGGAGCGCATGCAGGAGCAGTTAAAGAAGGCTACGGCAGCAGGGGCATaGCTGGTGTCTGGGGTACAG | + |
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Preference number: 4 (lower is better) Translates to: QEHDVERLERMQEQLKKATAAGA*LVSGVQ Trigger: CTGTACCCCAGACACCAGCCATGCCCCTGCTGCCGT...AGCCTTCTTTAACTGCTCCTGCATGCGCTCCAGCCGCTCCACATCGTGTTCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| CDS-3UTR GCA 90 bp | CTTTCACCGGGCATTCTGCTCCACTTCCAACTGGTAGGGACTGGAAGCAAGGATACCCGGCAGGCCAAGTaGAATGCCGTGTGGCCCCCT | + |
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Preference number: 4 (lower is better) Translates to: LSPGILLHFQLVGTGSKDTRQAK*NAVWPP Trigger: AGGGGGCCACACGGCATTGCACTTGGCCTGCCGGGT...ATCCTTGCTTCCAGTCCCTACCAGTTGGAAGTGGAGCAGAATGCCCGGTGAAAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| CDS-3UTR GCA 90 bp | TGTCAGGCCAAGCATATGAAGTGGCAGAGCTGCTATTCACAGTGGCCATCGAGGTGCCTGGGCTTCTACTaGCAGGTGCAGAGGGGTCCG | + |
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Preference number: 4 (lower is better) Translates to: CQAKHMKWQSCYSQWPSRCLGFY*QVQRGP Trigger: CGGACCCCTCTGCACCTGGCAGTAGAAGCCCAGGCA...CCTCGATGGCCACTGTGAATAGCAGCTCTGCCACTTCATATGCTTGGCCTGACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| CDS-3UTR TCA 90 bp | TCCCTGAGGCTCAGGACTGTTGACCTCAGAGCCTCCTTTCACCGGGCATTCTGCAGTGAGGTAGGTATCTaGGGCATCTCTTGGGTGGCT | + |
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Preference number: 4 (lower is better) Translates to: SLRLRTVDLRASFHRAFCSEVGI*GISWVA Trigger: AGCCACCCAAGAGATGCCTCAGATACCTACCTCACT...GCAGAATGCCCGGTGAAAGGAGGCTCTGAGGTCAACAGTCCTGAGCCTCAGGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| CDS-3UTR GCA 90 bp | AGAGCTTTGGGCCTTGTAGAAGCAAGGATGGTGGTCCTCACTGACTATGACACACTCTGGGCCAAGCTCTaGGCCCAGACCTGGTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: RALGLVEARMVVLTDYDTLWAKL*AQTWSS Trigger: GGAGGACCAGGTCTGGGCGCAGAGCTTGGCCCAGAG...TGTGTCATAGTCAGTGAGGACCACCATCCTTGCTTCTACAAGGCCCAAAGCTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| CDS-3UTR GCA 90 bp | GCCGCTCAGGTGGGCAAGCAGAGCTTTGGGCCTTGTAGAAGCAAGGATGGTGGTTGGCCTAGGTCATTCTaGAGGTCAAGGTACTCGGTG | + |
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Preference number: 4 (lower is better) Translates to: AAQVGKQSFGPCRSKDGGWPRSF*RSRYSV Trigger: CACCGAGTACCTTGACCTGCAGAATGACCTAGGCCA...ACCACCATCCTTGCTTCTACAAGGCCCAAAGCTCTGCTTGCCCACCTGAGCGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| CDS-3UTR CCA 90 bp | TCTCCCCCAGGAACACGATGTGGAGCGGCTGGAGCGCATGCAGGAGCAGTTAAACTCCTCTTCGTTCTCTaGGTTGGGTTGGGAATCCAC | + |
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Preference number: 4 (lower is better) Translates to: SPPGTRCGAAGAHAGAVKLLFVL*VGLGIH Trigger: GTGGATTCCCAACCCAACCCAGAGAACGAAGAGGAG...TTTAACTGCTCCTGCATGCGCTCCAGCCGCTCCACATCGTGTTCCTGGGGGAGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| CDS-3UTR GCA 90 bp | CCTCCTTTCACCGGGCATTCTGCTCCACTTCCAACTGGTAGGGACTGGAAGCAAAGGATGGCTGCTAGATaGAGGGCTGTTTGGCCTAGG | + |
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Preference number: 4 (lower is better) Translates to: PPFTGHSAPLPTGRDWKQRMAAR*RAVWPR Trigger: CCTAGGCCAAACAGCCCTGCATCTAGCAGCCATCCT...TTGCTTCCAGTCCCTACCAGTTGGAAGTGGAGCAGAATGCCCGGTGAAAGGAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| CDS-3UTR CCA 90 bp | CCTCCTTTCACCGGGCATTCTGCTCCACTTCCAACTGGTAGGGACTGGAAGCAAAGATGCAGGGCTGTTTaGCCTAGGTCATTCTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: PPFTGHSAPLPTGRDWKQRCRAV*PRSFCR Trigger: CCTGCAGAATGACCTAGGCCAAACAGCCCTGCATCT...TTGCTTCCAGTCCCTACCAGTTGGAAGTGGAGCAGAATGCCCGGTGAAAGGAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| CDS-3UTR CCA 90 bp | AGAGCTTTGGGCCTTGTAGAAGCAAGGATGGTGGTCCTCACTGACTATGACACAAAGTGCAATGCCGTGTaGCCCCCTCTCTCAGCCACC | + |
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Preference number: 4 (lower is better) Translates to: RALGLVEARMVVLTDYDTKCNAV*PPLSAT Trigger: GGTGGCTGAGAGAGGGGGCCACACGGCATTGCACTT...TGTGTCATAGTCAGTGAGGACCACCATCCTTGCTTCTACAAGGCCCAAAGCTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| CDS-3UTR CCA 90 bp | TGTCAGGCCAAGCATATGAAGTGGCAGAGCTGCTATTCACAGTGGCCATCGAGGCTTCGTTCTCTGGGTTaGGTTGGGAATCCACGGCAG | + |
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Preference number: 4 (lower is better) Translates to: CQAKHMKWQSCYSQWPSRLRSLG*VGNPRQ Trigger: CTGCCGTGGATTCCCAACCCAACCCAGAGAACGAAG...CCTCGATGGCCACTGTGAATAGCAGCTCTGCCACTTCATATGCTTGGCCTGACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| CDS-3UTR GCA 90 bp | TCAGGCCAAGCATATGAAGTGGCAGAGCTGCTATTCACAGTGGCCATCGAGGTGCTTCTCTACTGTAGATaGCTCCCCAAGGATGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: SGQAYEVAELLFTVAIEVLLYCR*LPKDGC Trigger: GCAGCCATCCTTGGGGAGGCATCTACAGTAGAGAAG...CACCTCGATGGCCACTGTGAATAGCAGCTCTGCCACTTCATATGCTTGGCCTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| CDS-3UTR TCA 90 bp | GCAAGCAGAGCTTTGGGCCTTGTAGAAGCAAGGATGGTGGTCCTCACTGACTATTGTCCCCATCCTCAGTaGCGTAGCCAAAGACTAAGG | + |
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Preference number: 4 (lower is better) Translates to: ASRALGLVEARMVVLTDYCPHPQ*RSQRLR Trigger: CCTTAGTCTTTGGCTACGTCACTGAGGATGGGGACA...ATAGTCAGTGAGGACCACCATCCTTGCTTCTACAAGGCCCAAAGCTCTGCTTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| CDS-3UTR TCA 90 bp | CAAGCATATGAAGTGGCAGAGCTGCTATTCACAGTGGCCATCGAGGTGGTAACCCTGCATCTTTGTGGATaGCAGCTACATGGAGTGGGG | + |
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Preference number: 4 (lower is better) Translates to: QAYEVAELLFTVAIEVVTLHLCG*QLHGVG Trigger: CCCCACTCCATGTAGCTGTCATCCACAAAGATGCAG...GGTTACCACCTCGATGGCCACTGTGAATAGCAGCTCTGCCACTTCATATGCTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| CDS-3UTR GCA 90 bp | AAACCAGCTGTGACGACACACATCTCTGGTCCCAGCACTCACAAAGATCCAGAGCAGCCGGACCATCTCTaGATCTTTGTGGATGACAGC | + |
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Preference number: 4 (lower is better) Translates to: KPAVTTHISGPSTHKDPEQPDHL*IFVDDS Trigger: GCTGTCATCCACAAAGATGCAGAGATGGTCCGGCTG...CTCTGGATCTTTGTGAGTGCTGGGACCAGAGATGTGTGTCGTCACAGCTGGTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| CDS-3UTR TCA 90 bp | CAAGCATATGAAGTGGCAGAGCTGCTATTCACAGTGGCCATCGAGGTGGTAACCTGGCTCCTGCCACTGTaGACCACGATGTCATCATAT | + |
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Preference number: 4 (lower is better) Translates to: QAYEVAELLFTVAIEVVTWLLPL*TTMSSY Trigger: ATATGATGACATCGTGGTTCACAGTGGCAGGAGCCA...GGTTACCACCTCGATGGCCACTGTGAATAGCAGCTCTGCCACTTCATATGCTTG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| CDS-3UTR CCA 90 bp | CAGGAACACGATGTGGAGCGGCTGGAGCGCATGCAGGAGCAGTTAAAGAAGGCTATCTCTGCATCTTTGTaGATGACAGCTACATGGAGT | + |
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Preference number: 4 (lower is better) Translates to: QEHDVERLERMQEQLKKAISASL*MTATWS Trigger: ACTCCATGTAGCTGTCATCCACAAAGATGCAGAGAT...AGCCTTCTTTAACTGCTCCTGCATGCGCTCCAGCCGCTCCACATCGTGTTCCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| CDS TCA 90 bp | GGCTGGGACGGGGCTGGAGCAGTACGCACGCGCACGTGTGTGCCCTaGCCCGGCAGGCCAAGTGCAATGCCGTGTGGCCCCCTCTCTCAG | + |
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Preference number: 5 (lower is better) Translates to: GWDGAGAVRTRTCVP*PGRPSAMPCGPLSQ Trigger: CTGAGAGAGGGGGCCACACGGCATTGCACTTGGCCTGCCGGGTCAGGGCACACACGTGCGCGTGCGTACTGCTCCAGCCCCGTCCCAGCC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 |
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| CDS GCA 90 bp | TGGGTGGCTGGGACGGGGCTGGAGCAGTACGCACGCGCACGTGTGTaGCCTGACCCGGCAGGCCAAGTGCAATGCCGTGTGGCCCCCTCT | + |
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Preference number: 5 (lower is better) Translates to: WVAGTGLEQYARARV*PDPAGQVQCRVAPS Trigger: AGAGGGGGCCACACGGCATTGCACTTGGCCTGCCGGGTCAGGGCACACACGTGCGCGTGCGTACTGCTCCAGCCCCGTCCCAGCCACCCA 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 |
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| CDS CCA 90 bp | GCAGGGCACTGCCAAGCGGGGTGCGGCCCCCATACATGCGGGCGGTaGGGTCAGCACCGGCTTTCAGGAGAAGTTCCAGCACGCTGGCTG | + |
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Preference number: 5 (lower is better) Translates to: AGHCQAGCGPHTCGR*GQHRLSGEVPARWL Trigger: CAGCCAGCGTGCTGGAACTTCTCCTGAAAGCCGGTGCTGACCCCACCGCCCGCATGTATGGGGGCCGCACCCCGCTTGGCAGTGCCCTGC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 |
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| CDS CCA 90 bp | GCGCACGTGTGTGCCCTGACCCGGCAGGCCAAGTGCAATGCCGTGTaGCCCCCTCTCTCAGCCACCAACACTCCTGCACCGGCTGCATAC | + |
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Preference number: 5 (lower is better) Translates to: AHVCALTRQAKCNAV*PPLSATNTPAPAAY Trigger: GTATGCAGCCGGTGCAGGAGTGTTGGTGGCTGAGAGAGGGGGCCACACGGCATTGCACTTGGCCTGCCGGGTCAGGGCACACACGTGCGC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 ENSMUST00000137121.2 |
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| CDS GCA 90 bp | GGTGGGGTCAGCACCGGCTTTCAGGAGAAGTTCCAGCACGCTGGCTaGCTGGGCTTCTACTGCCAGGTGCAGAGGGGTCCGGCCACACGT | + |
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Preference number: 5 (lower is better) Translates to: GGVSTGFQEKFQHAG*LGFYCQVQRGPATR Trigger: ACGTGTGGCCGGACCCCTCTGCACCTGGCAGTAGAAGCCCAGGCAGCCAGCGTGCTGGAACTTCTCCTGAAAGCCGGTGCTGACCCCACC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 |
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| CDS GCA 90 bp | AGGAGAAGTTCCAGCACGCTGGCTGCCTGGGCTTCTACTGCCAGGTaGAGAGGGGTCCGGCCACACGTAGGCTCCGGTTTATTGAGGTCG | + |
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Preference number: 5 (lower is better) Translates to: RRSSSTLAAWASTAR*RGVRPHVGSGLLRS Trigger: CGACCTCAATAAACCGGAGCCTACGTGTGGCCGGACCCCTCTGCACCTGGCAGTAGAAGCCCAGGCAGCCAGCGTGCTGGAACTTCTCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 |
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| CDS GCA 90 bp | GGCTTTCAGGAGAAGTTCCAGCACGCTGGCTGCCTGGGCTTCTACTaGCAGGTGCAGAGGGGTCCGGCCACACGTAGGCTCCGGTTTATT | + |
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Preference number: 5 (lower is better) Translates to: GFQEKFQHAGCLGFY*QVQRGPATRRLRFI Trigger: AATAAACCGGAGCCTACGTGTGGCCGGACCCCTCTGCACCTGGCAGTAGAAGCCCAGGCAGCCAGCGTGCTGGAACTTCTCCTGAAAGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 |
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| CDS CCA 90 bp | CTCCAGTCTTCATCACGCGGCTCCTCTTCGTTCTCTGGGTTGGGTTaGGAATCCACGGCAGCAGGGGCATGGCTGGTGTCTGGGGTACAG | + |
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Preference number: 5 (lower is better) Translates to: LQSSSRGSSSFSGLG*ESTAAGAWLVSGVQ Trigger: CTGTACCCCAGACACCAGCCATGCCCCTGCTGCCGTGGATTCCCAACCCAACCCAGAGAACGAAGAGGAGCCGCGTGATGAAGACTGGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 |
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| CDS GCA 90 bp | TGCCGTGTGGCCCCCTCTCTCAGCCACCAACACTCCTGCACCGGCTaGATACAACTTCTCTACTGTAGATGCCTCCCCAAGGATGGCTGC | + |
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Preference number: 5 (lower is better) Translates to: CRVAPSLSHQHSCTG*IQLLYCRCLPKDGC Trigger: GCAGCCATCCTTGGGGAGGCATCTACAGTAGAGAAGTTGTATGCAGCCGGTGCAGGAGTGTTGGTGGCTGAGAGAGGGGGCCACACGGCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 ENSMUST00000137121.2 |
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| CDS GCA 90 bp | CAAGTGCAATGCCGTGTGGCCCCCTCTCTCAGCCACCAACACTCCTaGACCGGCTGCATACAACTTCTCTACTGTAGATGCCTCCCCAAG | + |
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Preference number: 5 (lower is better) Translates to: QVQCRVAPSLSHQHS*TGCIQLLYCRCLPK Trigger: CTTGGGGAGGCATCTACAGTAGAGAAGTTGTATGCAGCCGGTGCAGGAGTGTTGGTGGCTGAGAGAGGGGGCCACACGGCATTGCACTTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 ENSMUST00000137121.2 |
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| CDS-3UTR CAA 90 bp | TGTCAGGCCAAGCATATGAAGTGGCAGAGCTGCTATTCACAGTGGCCATCGAGGTATCTGAGGCATCTCTaGGGTGGCTGGGACGGGGCT | + |
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Preference number: 5 (lower is better) Translates to: CQAKHMKWQSCYSQWPSRYLRHL*GGWDGA Trigger: AGCCCCGTCCCAGCCACCCAAGAGATGCCTCAGATA...CCTCGATGGCCACTGTGAATAGCAGCTCTGCCACTTCATATGCTTGGCCTGACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| CDS-3UTR CAA 90 bp | TGTCAGGCCAAGCATATGAAGTGGCAGAGCTGCTATTCACAGTGGCCATCGAGGGTTCTCTGGGTTGGGTaGGGAATCCACGGCAGCAGG | + |
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Preference number: 5 (lower is better) Translates to: CQAKHMKWQSCYSQWPSRVLWVG*GIHGSR Trigger: CCTGCTGCCGTGGATTCCCAACCCAACCCAGAGAAC...CCTCGATGGCCACTGTGAATAGCAGCTCTGCCACTTCATATGCTTGGCCTGACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| CDS GCA 90 bp | TTTATTGAGGTCGGCTCCGGCATCCCTGAGCAGCCGGACCATCTCTaGATCTTTGTGGATGACAGCTACATGGAGTGGGGTATGGCCATC | + |
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Preference number: 5 (lower is better) Translates to: FIEVGSGIPEQPDHL*IFVDDSYMEWGMAI Trigger: GATGGCCATACCCCACTCCATGTAGCTGTCATCCACAAAGATGCAGAGATGGTCCGGCTGCTCAGGGATGCCGGAGCCGACCTCAATAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 |
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| CDS GCA 90 bp | GAAGAGGTTTGGATGCCGGGGAAGGCGGTTGTCGGTTTTGGCTCCTaGCACTGTGAACCACGATGTCATCATATTCATCGCCCTCATCTC | + |
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Preference number: 5 (lower is better) Translates to: EEVWMPGKAVVGFGS*HCEPRCHHIHRPHL Trigger: GAGATGAGGGCGATGAATATGATGACATCGTGGTTCACAGTGGCAGGAGCCAAAACCGACAACCGCCTTCCCCGGCATCCAAACCTCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 |
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| CDS-3UTR CAA 90 bp | TCAGGCCAAGCATATGAAGTGGCAGAGCTGCTATTCACAGTGGCCATCGAGGTGTCGCCCTCATCTCTGTaGTCACTGTCACTGTCGCTG | + |
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Preference number: 5 (lower is better) Translates to: SGQAYEVAELLFTVAIEVSPSSL*SLSLSL Trigger: CAGCGACAGTGACAGTGACAACAGAGATGAGGGCGA...CACCTCGATGGCCACTGTGAATAGCAGCTCTGCCACTTCATATGCTTGGCCTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| CDS-3UTR CAA 90 bp | CAAGCATATGAAGTGGCAGAGCTGCTATTCACAGTGGCCATCGAGGTGGTAACCTCATCAGGAAGAGGTTaGGATGCCGGGGAAGGCGGT | + |
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Preference number: 5 (lower is better) Translates to: QAYEVAELLFTVAIEVVTSSGRG*DAGEGG Trigger: ACCGCCTTCCCCGGCATCCAAACCTCTTCCTGATGA...GGTTACCACCTCGATGGCCACTGTGAATAGCAGCTCTGCCACTTCATATGCTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032815.11 |
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| CDS TCA 72 bp | GGGGCTGGAGCAGTACGCACGCGCACGTGTGTGCCCTaGCCCGGCAGGCCAAGTGCAATGCCGTGTGGCCCC | + |
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Preference number: 6 (lower is better) Translates to: GAGAVRTRTCVP*PGRPSAMPCGP Trigger: GGGGCCACACGGCATTGCACTTGGCCTGCCGGGTCAGGGCACACACGTGCGCGTGCGTACTGCTCCAGCCCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 ENSMUST00000137121.2 |
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| CDS CCA 72 bp | TGTGCCCTGACCCGGCAGGCCAAGTGCAATGCCGTGTaGCCCCCTCTCTCAGCCACCAACACTCCTGCACCG | + |
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Preference number: 6 (lower is better) Translates to: CALTRQAKCNAV*PPLSATNTPAP Trigger: CGGTGCAGGAGTGTTGGTGGCTGAGAGAGGGGGCCACACGGCATTGCACTTGGCCTGCCGGGTCAGGGCACA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 ENSMUST00000137121.2 |
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| CDS CCA 72 bp | TGCCAAGCGGGGTGCGGCCCCCATACATGCGGGCGGTaGGGTCAGCACCGGCTTTCAGGAGAAGTTCCAGCA | + |
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Preference number: 6 (lower is better) Translates to: CQAGCGPHTCGR*GQHRLSGEVPA Trigger: TGCTGGAACTTCTCCTGAAAGCCGGTGCTGACCCCACCGCCCGCATGTATGGGGGCCGCACCCCGCTTGGCA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 |
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| CDS CAA 72 bp | TGCAGAGGGGTCCGGCCACACGTAGGCTCCGGTTTATaGAGGTCGGCTCCGGCATCCCTGAGCAGCCGGACC | + |
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Preference number: 6 (lower is better) Translates to: CRGVRPHVGSGL*RSAPASLSSRT Trigger: GGTCCGGCTGCTCAGGGATGCCGGAGCCGACCTCAATAAACCGGAGCCTACGTGTGGCCGGACCCCTCTGCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 |
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| CDS GCA 72 bp | GAGAAGTTCCAGCACGCTGGCTGCCTGGGCTTCTACTaGCAGGTGCAGAGGGGTCCGGCCACACGTAGGCTC | + |
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Preference number: 6 (lower is better) Translates to: EKFQHAGCLGFY*QVQRGPATRRL Trigger: GAGCCTACGTGTGGCCGGACCCCTCTGCACCTGGCAGTAGAAGCCCAGGCAGCCAGCGTGCTGGAACTTCTC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 |
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| CDS CCA 72 bp | GTATCTGAGGCATCTCTTGGGTGGCTGGGACGGGGCTaGAGCAGTACGCACGCGCACGTGTGTGCCCTGACC | + |
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Preference number: 6 (lower is better) Translates to: VSEASLGWLGRG*SSTHAHVCALT Trigger: GGTCAGGGCACACACGTGCGCGTGCGTACTGCTCCAGCCCCGTCCCAGCCACCCAAGAGATGCCTCAGATAC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 |
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| CDS CAA 90 bp | ACTGCCAGGTGCAGAGGGGTCCGGCCACACGTAGGCTCCGGTTTATaGAGGTCGGCTCCGGCATCCCTGAGCAGCCGGACCATCTCTGCA | + |
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Preference number: 6 (lower is better) Translates to: TARCRGVRPHVGSGL*RSAPASLSSRTISA Trigger: TGCAGAGATGGTCCGGCTGCTCAGGGATGCCGGAGCCGACCTCAATAAACCGGAGCCTACGTGTGGCCGGACCCCTCTGCACCTGGCAGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 |
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| CDS GCA 72 bp | AGCACCGGCTTTCAGGAGAAGTTCCAGCACGCTGGCTaGCTGGGCTTCTACTGCCAGGTGCAGAGGGGTCCG | + |
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Preference number: 6 (lower is better) Translates to: STGFQEKFQHAG*LGFYCQVQRGP Trigger: CGGACCCCTCTGCACCTGGCAGTAGAAGCCCAGGCAGCCAGCGTGCTGGAACTTCTCCTGAAAGCCGGTGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 |
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| CDS GCA 72 bp | GCTGCTAGATGCAGGGCTGTTTGGCCTAGGTCATTCTaGAGGTCAAGGTACTCGGTGCCGGCGGAGAAGCCC | + |
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Preference number: 6 (lower is better) Translates to: AARCRAVWPRSF*RSRYSVPAEKP Trigger: GGGCTTCTCCGCCGGCACCGAGTACCTTGACCTGCAGAATGACCTAGGCCAAACAGCCCTGCATCTAGCAGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 ENSMUST00000137121.2 |
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| CDS CCA 72 bp | TCATCACGCGGCTCCTCTTCGTTCTCTGGGTTGGGTTaGGAATCCACGGCAGCAGGGGCATGGCTGGTGTCT | + |
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Preference number: 6 (lower is better) Translates to: SSRGSSSFSGLG*ESTAAGAWLVS Trigger: AGACACCAGCCATGCCCCTGCTGCCGTGGATTCCCAACCCAACCCAGAGAACGAAGAGGAGCCGCGTGATGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 |
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| CDS CCA 72 bp | AGTCTTCATCACGCGGCTCCTCTTCGTTCTCTGGGTTaGGTTGGGAATCCACGGCAGCAGGGGCATGGCTGG | + |
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Preference number: 6 (lower is better) Translates to: SLHHAAPLRSLG*VGNPRQQGHGW Trigger: CCAGCCATGCCCCTGCTGCCGTGGATTCCCAACCCAACCCAGAGAACGAAGAGGAGCCGCGTGATGAAGACT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 |
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| CDS CCA 72 bp | CCTCCAGTCTTCATCACGCGGCTCCTCTTCGTTCTCTaGGTTGGGTTGGGAATCCACGGCAGCAGGGGCATG | + |
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Preference number: 6 (lower is better) Translates to: PPVFITRLLFVL*VGLGIHGSRGM Trigger: CATGCCCCTGCTGCCGTGGATTCCCAACCCAACCCAGAGAACGAAGAGGAGCCGCGTGATGAAGACTGGAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 |
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| CDS CAA 72 bp | TTCATCACGCGGCTCCTCTTCGTTCTCTGGGTTGGGTaGGGAATCCACGGCAGCAGGGGCATGGCTGGTGTC | + |
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Preference number: 6 (lower is better) Translates to: FITRLLFVLWVG*GIHGSRGMAGV Trigger: GACACCAGCCATGCCCCTGCTGCCGTGGATTCCCAACCCAACCCAGAGAACGAAGAGGAGCCGCGTGATGAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 |
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| CDS GCA 72 bp | GTCGGCTCCGGCATCCCTGAGCAGCCGGACCATCTCTaGATCTTTGTGGATGACAGCTACATGGAGTGGGGT | + |
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Preference number: 6 (lower is better) Translates to: VGSGIPEQPDHL*IFVDDSYMEWG Trigger: ACCCCACTCCATGTAGCTGTCATCCACAAAGATGCAGAGATGGTCCGGCTGCTCAGGGATGCCGGAGCCGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 |
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| CDS TCA 72 bp | CATGGCTGGTGTCTGGGGTACAGTCCTGGCTCTGAGTaGGGTAGGTATCTGAGGCATCTCTTGGGTGGCTGG | + |
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Preference number: 6 (lower is better) Translates to: HGWCLGYSPGSE*GRYLRHLLGGW Trigger: CCAGCCACCCAAGAGATGCCTCAGATACCTACCTCACTCAGAGCCAGGACTGTACCCCAGACACCAGCCATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 |
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| CDS GCA 72 bp | GCCCCCTCTCTCAGCCACCAACACTCCTGCACCGGCTaGATACAACTTCTCTACTGTAGATGCCTCCCCAAG | + |
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Preference number: 6 (lower is better) Translates to: APSLSHQHSCTG*IQLLYCRCLPK Trigger: CTTGGGGAGGCATCTACAGTAGAGAAGTTGTATGCAGCCGGTGCAGGAGTGTTGGTGGCTGAGAGAGGGGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 ENSMUST00000137121.2 |
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| CDS GCA 72 bp | TGGATGCCGGGGAAGGCGGTTGTCGGTTTTGGCTCCTaGCACTGTGAACCACGATGTCATCATATTCATCGC | + |
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Preference number: 6 (lower is better) Translates to: WMPGKAVVGFGS*HCEPRCHHIHR Trigger: GCGATGAATATGATGACATCGTGGTTCACAGTGGCAGGAGCCAAAACCGACAACCGCCTTCCCCGGCATCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 |
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| CDS TCA 72 bp | GGGGAAGGCGGTTGTCGGTTTTGGCTCCTGCCACTGTaGACCACGATGTCATCATATTCATCGCCCTCATCT | + |
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Preference number: 6 (lower is better) Translates to: GEGGCRFWLLPL*TTMSSYSSPSS Trigger: AGATGAGGGCGATGAATATGATGACATCGTGGTTCACAGTGGCAGGAGCCAAAACCGACAACCGCCTTCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 |
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| CDS GCA 72 bp | TCTACTGTAGATGCCTCCCCAAGGATGGCTGCTAGATaGAGGGCTGTTTGGCCTAGGTCATTCTGCAGGTCA | + |
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Preference number: 6 (lower is better) Translates to: STVDASPRMAAR*RAVWPRSFCRS Trigger: TGACCTGCAGAATGACCTAGGCCAAACAGCCCTGCATCTAGCAGCCATCCTTGGGGAGGCATCTACAGTAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 ENSMUST00000137121.2 |
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| CDS CAA 72 bp | AAGAGGTTTGGATGCCGGGGAAGGCGGTTGTCGGTTTaGGCTCCTGCCACTGTGAACCACGATGTCATCATA | + |
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Preference number: 6 (lower is better) Translates to: KRFGCRGRRLSV*APATVNHDVII Trigger: TATGATGACATCGTGGTTCACAGTGGCAGGAGCCAAAACCGACAACCGCCTTCCCCGGCATCCAAACCTCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032815.11 ENSMUST00000085851.12 |
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